Citrus Sinensis ID: 024459

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MGSKCKSVKTLSYSFLLRLSEQQQSLHGVSSFIQPLLTNQQWRRFYCSRPLSKIRDPKIFRSFNLSSRYRSHSHSFSSFSSNSSSSKFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKASLSKVSSS
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEccccHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccEEcHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHccHHEEEEEccccccccEEEcccccHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccEccHHHEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MGSKCKSVKTLSYSFLLRLSEQQqslhgvssfiqplltnqqwrrfycsrplskirdpkifrsfnlssryrshshsfssfssnsssskfgfvgwylgkleshplttkgisSSLIYVAADLTsqmitlppsgsidsIRTLRMAVYGMLILGPSQHYWFNFLSrilpkrdaLTTLKKIFMgqaiygpltTTIFFSYNAALQGETTGEIVARLKRDLlptmgrnlvywpicdfitfkfipvhlqplvnssFAYVWTIYLTYKAslskvsss
Flexible Loop (DISEMBL)
MGSKCKSVKTLSYSFLLRLSEQQQSLHGVSSFIQPLLTNQQWRRFYCsrplskirdpkIFRSFNLSSRYRSHShsfssfssnsssSKFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKaslskvsss
Low Complexity Region (SEG)
MGSKCKSVKTLSYSFLLRLSEQQQSLHGVSSFIQPLLTNQQWRRFYCSRPLSKIRDPKIFRSFNLssryrshshsfssfssnssssKFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKASLSKVSSS
Disordered region (IsUnstruct)
*********TLSYSFLLRLSEQQQSLHGVSSFIQPLLTNQQWRRFYCSRPLSKIRDPKIFRSF************************FGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKA********
Disordered Region (DISOPRED)
***********SYSFLLRLSEQQQSLHGVSSFIQPLLTN**************************************************FVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLT***********
Disordered Region (DISEMBL)
********KTLSYSFLLRLSEQQQSLHGVSSFIQPLLTNQQWRRFYCSRPLSKIRDPKIFRSFNLSS******************SKFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKA********
Disordered Region (DISPRO)
****CKSVKTLSYSFLLRLSEQQQSLHGVSSFIQPLLTNQQWRRFYCSRPLSKIRD*****************************SKFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKASL******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSKCKSVKTLSYSFLLRLSEQQQSLHGVSSFIQPLLTNQQWRRFYCSRPLSKIRDPKIFRSFNLSSRYRSHSHSFSSFSSNSSSSKFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKASLSKVSSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q54FR4	185	PXMP2/4 family protein 4	yes	no	0.625	0.902	0.316	5e-21
Q4IPX8	175	Protein SYM1 OS=Gibberell	yes	no	0.617	0.942	0.274	2e-17
Q54GD8	184	PXMP2/4 family protein 3	no	no	0.614	0.891	0.295	4e-16
Q7SCY7	172	Protein sym-1 OS=Neurospo	N/A	no	0.606	0.941	0.261	1e-15
Q754F0	182	Protein SYM1 OS=Ashbya go	yes	no	0.640	0.939	0.257	2e-15
Q2TXA2	173	Protein sym1 OS=Aspergill	yes	no	0.629	0.971	0.277	3e-15
Q66GV0	177	Protein Mpv17 OS=Xenopus	N/A	no	0.617	0.932	0.295	8e-15
Q9ZS51	190	Peroxisomal membrane prot	no	no	0.606	0.852	0.288	2e-14
Q6CIY7	195	Protein SYM1 OS=Kluyverom	yes	no	0.651	0.892	0.252	3e-14
Q2KIY1	196	Peroxisomal membrane prot	yes	no	0.625	0.852	0.274	5e-14

>sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1

 Score =  101 bits (252), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 10/177 (5%)

Query: 94  YLGKLESHPLTTKGISSSLIYVAADLTSQMITL--PPSGSIDSIRTLRMAVYGMLILGPS 151
           YL +L  +P+ TK ++S  +Y+ +D   Q I L        D  R++RMAV+G  + GP 
Sbjct: 15  YLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPL 74

Query: 152 QHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKR 211
            HYWF +L +  PK+       K+ + Q +  P+   +FFS    L+G++  +IV +LK+
Sbjct: 75  FHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMGILEGKSKDDIVEKLKK 134

Query: 212 DLLPTMGRNLVYWPICDFITFKFI-PVHLQPLVNSSFAYVWTIYLTYKASLSKVSSS 267
           D L T   + V WP  +F+ F +I  +H    +N          + + A L+K++SS
Sbjct: 135 DWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMN-------VCNIGWGAFLAKMNSS 184

Dictyostelium discoideum (taxid: 44689)

>sp|Q4IPX8|SYM1_GIBZE Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SYM1 PE=3 SV=1

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 6/171 (3%)

Query: 90  FVGWYLGKLESHPLTTKGISSSLIYVAADLTSQ-MITLPPSGSIDSIRTLRMAVYGMLIL 148
           F+ WY  +L + PL T+ ++++ ++   D+T+Q ++    +   D +RT RMA+YG  + 
Sbjct: 4   FIRWYNSRLAARPLLTQSVTTAFLFATGDVTAQQLVEKRGAQKHDLVRTGRMALYGGFVF 63

Query: 149 GPSQHYWFNFLSRILPKRD--ALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIV 206
           GP    WF FL+R +  R+      L ++   Q  + P+   +F S  A ++G++  E  
Sbjct: 64  GPVATTWFAFLARRVNVRNNKKAEVLARVACDQLGFAPVMIGVFLSSMATMEGKSVKE-- 121

Query: 207 ARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTY 257
            R+ +   P +  N + WP    I F  IP+  +    +  A  W  YL++
Sbjct: 122 -RIDKTWWPALKANWMVWPAVQVINFSLIPLQYRLFFANIIAIGWNSYLSW 171

May be involved in cellular response to stress. Required to maintain mitochondrial DNA (mtDNA) integrity and stability.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

>sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 5/169 (2%)

Query: 93  WYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQ 152
           WY+ KL+S P+ TK ++S+ +   + + +Q         I+    ++  V+G LI  P  
Sbjct: 16  WYMKKLKSKPIQTKALTSATLSFISSVVAQKFI--EKKKINWNAVVKFTVWG-LISSPLV 72

Query: 153 HYWFNFLSRILPK-RDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKR 211
           HYW   L R+    +D   +  K+ + Q ++ P     F+S  A L G+    I+ +L  
Sbjct: 73  HYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLAILDGKPKS-ILFKLYF 131

Query: 212 DLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKAS 260
           DL PT+  +   WP+   I F+F+P HL+ L  +   + W IYL+  A+
Sbjct: 132 DLFPTLKASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILAT 180

Dictyostelium discoideum (taxid: 44689)

>sp|Q7SCY7|SYM1_NEUCR Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sym-1 PE=3 SV=2

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 6/168 (3%)

Query: 93  WYLGKLESHPLTTKGISSSLIYVAADLTSQ-MITLPPSGSIDSIRTLRMAVYGMLILGPS 151
           WY  +L + PL T+ +++S+++   D+ +Q ++      + D  RT RM +YG  + GP+
Sbjct: 4   WYKAQLAARPLLTQAVTTSILFGVGDVAAQQLVDRRGLSNHDLTRTGRMVLYGGAVFGPA 63

Query: 152 QHYWFNFLSR--ILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARL 209
              WF FL +  ++P     T L ++   Q ++ P    IF    A L+G    E   +L
Sbjct: 64  ATTWFRFLQKRVVVPGSTNKTILARVAADQGLFAPTFIGIFLGSMAVLEGTDVKE---KL 120

Query: 210 KRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTY 257
           +++    +  N + WP    + FK +P+  + L  +  +  W  YL++
Sbjct: 121 QKNYWEALSTNWMVWPFVQMVNFKVVPLDHRVLFVNVISIGWNCYLSW 168

May be involved in cellular response to stress. Required to maintain mitochondrial DNA (mtDNA) integrity and stability.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q754F0|SYM1_ASHGO Protein SYM1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SYM1 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 4/175 (2%)

Query: 90  FVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILG 149
           F  +Y   L+SHP  T  +++  ++   D+ +Q     P  S D +RTLR  +YG ++  
Sbjct: 4   FFKFYKASLQSHPKRTNALTTGFLFGLGDIVAQTQFPEPGASYDPMRTLRPFLYGAVLFS 63

Query: 150 PSQHYWFNFLSRI----LPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEI 205
                W+ FLS +    LP+      L ++   Q I+ P+   ++++  A ++G +  ++
Sbjct: 64  LVGDKWYRFLSTVRLGRLPQAHWANVLARVACDQLIFAPIGVPLYYTAMALMEGGSLEDV 123

Query: 206 VARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKAS 260
             RL      T+  N + WP      F  +PV  + L  +  +  W  YL+Y  S
Sbjct: 124 RIRLSEKWWSTLLANWIVWPAFQLCNFSLVPVQHRLLTVNVLSIFWNTYLSYSNS 178

May be involved in cellular response to stress. Required to maintain mitochondrial DNA (mtDNA) integrity and stability.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q2TXA2|SYM1_ASPOR Protein sym1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sym1 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 5/173 (2%)

Query: 93  WYLGKLESHPLTTKGISSSLIYVAAD-LTSQMITLPPSGSIDSIRTLRMAVYGMLILGPS 151
           WY  KL   P+ T  ++S++++ + D L  Q++        D  RT RMA+YG  I GP+
Sbjct: 4   WYQAKLAKQPILTASVTSAVLFGSGDVLAQQVVDRKGLEKHDFARTGRMALYGGAIFGPA 63

Query: 152 QHYWFNFLSR-ILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLK 210
              WF FL R ++ K    T + ++   Q ++ P   T F +  A ++G    + + + +
Sbjct: 64  ATTWFGFLQRNVVLKNSKATIVARVAADQCLFTPTHLTCFLTSMAIMEGS---DPIEKWR 120

Query: 211 RDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKASLSK 263
              LP+   NL  WP+   + F  +P+  + LV +  +  W   L+   S  K
Sbjct: 121 NSFLPSYKANLTIWPLVQGVNFSIVPLEYRVLVVNLVSLGWNCLLSMINSGDK 173

May be involved in cellular response to stress. Required to maintain mitochondrial DNA (mtDNA) integrity and stability.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q66GV0|MPV17_XENLA Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2

 Score = 80.9 bits (198), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 1/166 (0%)

Query: 98  LESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSI-RTLRMAVYGMLILGPSQHYWF 156
           L +HP   + +++  +    D+ SQ +         SI RT++M   G   +GP    W+
Sbjct: 12  LGAHPWKVQIVTAGSLVGVGDVISQQLLERKGLKGHSIERTVKMMGIGFCFVGPVVGGWY 71

Query: 157 NFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRDLLPT 216
             L RI+P       LKK+ + Q  + P     F S  +AL G +  +I  +LKRD    
Sbjct: 72  KILDRIIPGSGKPVALKKMLLDQVAFAPCFLGCFLSIASALNGLSGEQIWGKLKRDYKDA 131

Query: 217 MGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKASLS 262
           +  N   WP      F FIP++ +  V    A +W  YL++KA+ S
Sbjct: 132 LITNYYIWPAVQVANFYFIPLYHRLAVVQFVAIIWNSYLSWKANKS 177

Involved in mitochondria homeostasis.

Xenopus laevis (taxid: 8355)

>sp|Q9ZS51|PMP22_ARATH Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 8/170 (4%)

Query: 94  YLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQH 153
           YL +L+ HPL TK I++ ++   +D+ SQ   L     I   R L   ++    LGP+ H
Sbjct: 14  YLSQLQQHPLRTKAITAGVLSGVSDVVSQ--KLSGIQKIQLRRVLLKVIFAGGFLGPAGH 71

Query: 154 YWFNFLSRILP-KRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRD 212
           ++  +L +    K+D  T  KK+ + Q    PL   +F  Y   +   T   +V    + 
Sbjct: 72  FFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKK 131

Query: 213 LLPTMGRNLVYW---PICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKA 259
             PT+   L  W   P+  +I +K++P+H + +++S  A+ W I+LT +A
Sbjct: 132 TYPTV--QLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRA 179

May be involved in the metabolism of reactive oxygen species.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6CIY7|SYM1_KLULA Protein SYM1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SYM1 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 4/178 (2%)

Query: 89  GFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGS-IDSIRTLRMAVYGMLI 147
           GFV WY   ++  P  T GI +  ++   D+ +Q+      G   D  RT+R  VYG LI
Sbjct: 3   GFVNWYTASVKRSPRLTNGIMTGSLFGIGDVIAQVGFPEKKGQKYDLARTVRAVVYGSLI 62

Query: 148 LGPSQHYWFNFLSR---ILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGE 204
                  W+ FL++   + P +    T  ++   Q ++ P+   +++   + L+G++  +
Sbjct: 63  FSIIGDSWYKFLNQKVIVKPGKHWTNTAARVGCDQLLFAPVGIPMYYGVMSILEGKSLVD 122

Query: 205 IVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKASLS 262
              +++ +  PT+  N   WP    I F  +PVH +    +  +  W  +L++K S+S
Sbjct: 123 AKKKIEDNWWPTLVTNWYVWPAFQLINFSLVPVHHRLFSVNIISIFWNAFLSFKNSIS 180

May be involved in cellular response to stress. Required to maintain mitochondrial DNA (mtDNA) integrity and stability.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3

 Score = 78.2 bits (191), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 8/175 (4%)

Query: 94  YLGKLESHPLTTKGISSSLIYVAADLTSQMITLPP-----SGSIDSIRTLRMAVYGMLIL 148
           YL  L  +P+ TK  +S ++    +  +Q+I         S  +D    LR A+YG    
Sbjct: 25  YLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGPLRYAIYGFFFT 84

Query: 149 GPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVAR 208
           GP  H+++  + R +P    L  +K++ + + ++ P   ++FF     L+G+ T    A+
Sbjct: 85  GPLGHFFYLLMERWIPSEVPLAGIKRLLLDRLLFAPAFLSLFFLVMNFLEGQDTAAFAAK 144

Query: 209 LKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKASLSK 263
           +K    P +  N   W    FI   +IPV  + L  +  A  W  YL   ASL K
Sbjct: 145 MKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAYL---ASLGK 196

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
302142216	342	unnamed protein product [Vitis vinifera]	0.808	0.631	0.645	3e-73
225458806	241	PREDICTED: PXMP2/4 family protein 4 [Vit	0.786	0.871	0.649	1e-72
18422298	254	Peroxisomal membrane 22 kDa (Mpv17/PMP22	0.917	0.964	0.544	1e-71
297795133	253	hypothetical protein ARALYDRAFT_917372 [	0.700	0.739	0.663	2e-71
21553640	255	contains similarity to 22 kDa peroxisoma	0.910	0.952	0.541	1e-70
449450271	251	PREDICTED: PXMP2/4 family protein 4-like	0.662	0.705	0.694	7e-70
388498832	244	unknown [Lotus japonicus]	0.794	0.868	0.584	2e-68
224103721	184	predicted protein [Populus trichocarpa]	0.689	1.0	0.646	3e-68
224056232	184	predicted protein [Populus trichocarpa]	0.689	1.0	0.635	2e-67
357152222	260	PREDICTED: PXMP2/4 family protein 4-like	0.707	0.726	0.619	1e-66

>gi|302142216|emb|CBI19419.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 144/223 (64%), Positives = 170/223 (76%), Gaps = 7/223 (3%)

Query: 45  FYCSRPLSKIRDPKIFRSFNLSSRYRSHSHSFSSFSSNSSSSKFGFVGWYLGKLESHPLT 104
           F     L  IR+ +I R  NL S       S S  SS+S SSK GF+GWYLG LE+ PL 
Sbjct: 64  FASVHQLRNIRNSEISRPINLLS-------SRSFSSSSSRSSKIGFLGWYLGMLETSPLI 116

Query: 105 TKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQHYWFNFLSRILP 164
           TK ++SSLI+ AADLTSQ I LPPSGS D IRTLRM  YG+LILGPSQH WFNF++++LP
Sbjct: 117 TKSVTSSLIFAAADLTSQKIMLPPSGSFDPIRTLRMTGYGLLILGPSQHLWFNFVAKVLP 176

Query: 165 KRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRDLLPTMGRNLVYW 224
           KRD +TTLKKI MGQAI+GP   ++FFS NAALQGE+  EIVARLKRDLLPT    L+YW
Sbjct: 177 KRDVITTLKKIIMGQAIFGPCINSVFFSVNAALQGESGDEIVARLKRDLLPTQLNGLLYW 236

Query: 225 PICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKASLSKVSSS 267
           PICDF+TF+F+PVHLQPL+NSS +Y+WTIYLTY ASL KV + 
Sbjct: 237 PICDFVTFRFVPVHLQPLMNSSCSYLWTIYLTYMASLRKVEND 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458806|ref|XP_002283290.1| PREDICTED: PXMP2/4 family protein 4 [Vitis vinifera]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 141/217 (64%), Positives = 166/217 (76%), Gaps = 7/217 (3%)

Query: 51  LSKIRDPKIFRSFNLSSRYRSHSHSFSSFSSNSSSSKFGFVGWYLGKLESHPLTTKGISS 110
           L  IR+ +I R  NL S     S S       S SSK GF+GWYLG LE+ PL TK ++S
Sbjct: 32  LRNIRNSEISRPINLLSSRSFSSSS-------SRSSKIGFLGWYLGMLETSPLITKSVTS 84

Query: 111 SLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQHYWFNFLSRILPKRDALT 170
           SLI+ AADLTSQ I LPPSGS D IRTLRM  YG+LILGPSQH WFNF++++LPKRD +T
Sbjct: 85  SLIFAAADLTSQKIMLPPSGSFDPIRTLRMTGYGLLILGPSQHLWFNFVAKVLPKRDVIT 144

Query: 171 TLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFI 230
           TLKKI MGQAI+GP   ++FFS NAALQGE+  EIVARLKRDLLPT    L+YWPICDF+
Sbjct: 145 TLKKIIMGQAIFGPCINSVFFSVNAALQGESGDEIVARLKRDLLPTQLNGLLYWPICDFV 204

Query: 231 TFKFIPVHLQPLVNSSFAYVWTIYLTYKASLSKVSSS 267
           TF+F+PVHLQPL+NSS +Y+WTIYLTY ASL KV + 
Sbjct: 205 TFRFVPVHLQPLMNSSCSYLWTIYLTYMASLRKVCTD 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422298|ref|NP_568621.1| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana] gi|117958761|gb|ABK59685.1| At5g43140 [Arabidopsis thaliana] gi|332007532|gb|AED94915.1| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana]

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 136/250 (54%), Positives = 187/250 (74%), Gaps = 5/250 (2%)

Query: 18  RLSEQQQSLHGVS-SFIQPLLTNQQWRRFYCSRPLSKIRDPKIFRSFNLSSRYRSHSHSF 76
           R    ++SLHG++ + ++ + T ++    +  R + ++R    F    +  R  S S + 
Sbjct: 9   RFFSDRRSLHGINNALLKTVFTGRKPILGFSGRSIHELRKTGNF----VIPRVFSVSRNL 64

Query: 77  SSFSSNSSSSKFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIR 136
           ++ +S+SSS +  F+ WYL KLESHP  TK I++S+IY+AADLTSQMIT+ P+GS D IR
Sbjct: 65  TTKASSSSSKQPAFLRWYLRKLESHPFMTKSITTSVIYMAADLTSQMITMEPTGSFDLIR 124

Query: 137 TLRMAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAA 196
           T RMA +G++ LGPSQH WF++LS+ILPKRD LTT KKI MGQ ++GP++ T+F+SYNAA
Sbjct: 125 TARMASFGLIFLGPSQHLWFSYLSKILPKRDVLTTFKKIMMGQVLFGPVSNTVFYSYNAA 184

Query: 197 LQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLT 256
           LQGE + EIVARLKRDLLPT+   L+YWP+CDF+TFK++PVHLQPL+NSS AY+WTIYLT
Sbjct: 185 LQGENSEEIVARLKRDLLPTLKNGLMYWPVCDFVTFKYVPVHLQPLMNSSCAYIWTIYLT 244

Query: 257 YKASLSKVSS 266
           Y A+ +K  S
Sbjct: 245 YMANQTKADS 254

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795133|ref|XP_002865451.1| hypothetical protein ARALYDRAFT_917372 [Arabidopsis lyrata subsp. lyrata] gi|297311286|gb|EFH41710.1| hypothetical protein ARALYDRAFT_917372 [Arabidopsis lyrata subsp. lyrata]

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/187 (66%), Positives = 157/187 (83%)

Query: 80  SSNSSSSKFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLR 139
           +++SSS +  F+ WYL KLESHP  TK I++SLIY+AADLTSQMIT+ P GS D IRT R
Sbjct: 67  NASSSSKQPAFLRWYLRKLESHPFMTKSITTSLIYMAADLTSQMITMQPMGSFDLIRTAR 126

Query: 140 MAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQG 199
           MA +G++ LGPSQH WF++LS+ILPKRD LTT KKI MGQ ++GP++ T+F+SYNAALQG
Sbjct: 127 MASFGLIFLGPSQHLWFSYLSKILPKRDVLTTFKKIMMGQVLFGPVSNTVFYSYNAALQG 186

Query: 200 ETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKA 259
           E +GEI+ARLKRDLLPT+   L+YWP+CDF+TFK++PVHLQPL+NSS AY+WTIYLTY A
Sbjct: 187 ENSGEILARLKRDLLPTLKNGLMYWPVCDFVTFKYVPVHLQPLMNSSCAYIWTIYLTYMA 246

Query: 260 SLSKVSS 266
           + +K  S
Sbjct: 247 NQTKADS 253

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553640|gb|AAM62733.1| contains similarity to 22 kDa peroxisomal membrane protein [Arabidopsis thaliana]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 137/253 (54%), Positives = 186/253 (73%), Gaps = 10/253 (3%)

Query: 18  RLSEQQQSLHGVS-SFIQPLLTNQQWRRFYCSRPLSKIRDPKIF---RSFNLSSRYRSHS 73
           R    ++SLHG++ + ++ + T ++    +  R   ++R    F   R F++S    + +
Sbjct: 9   RFFSDRRSLHGINNALVKTVFTGRKPILGFSGRSFHELRKTGNFVIPRVFSVSRNLTTKA 68

Query: 74  HSFSSFSSNSSSSKFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSID 133
                 SS+SSS +  F+ WYL KLESHP  TK I++S+IY+AADLTSQMIT+ P+GS D
Sbjct: 69  ------SSSSSSKQPAFLRWYLRKLESHPFMTKSITTSVIYMAADLTSQMITMEPTGSFD 122

Query: 134 SIRTLRMAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSY 193
            IRT RMA +G++ LGPSQH WF++LS+ILPKRD LTT KKI MGQ ++GP++ T+F+SY
Sbjct: 123 LIRTARMASFGLIFLGPSQHLWFSYLSKILPKRDVLTTFKKIMMGQVLFGPVSNTVFYSY 182

Query: 194 NAALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTI 253
           NAALQGE + EIVARLKRDLLPT+   L+YWP+CDF+TFK++PVHLQPL+NSS AY+WTI
Sbjct: 183 NAALQGENSEEIVARLKRDLLPTLKNGLMYWPVCDFVTFKYVPVHLQPLMNSSCAYIWTI 242

Query: 254 YLTYKASLSKVSS 266
           YLTY A+ +K  S
Sbjct: 243 YLTYMANQTKADS 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450271|ref|XP_004142887.1| PREDICTED: PXMP2/4 family protein 4-like [Cucumis sativus] gi|449523640|ref|XP_004168831.1| PREDICTED: PXMP2/4 family protein 4-like [Cucumis sativus]

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 123/177 (69%), Positives = 147/177 (83%)

Query: 89  GFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLIL 148
           GFVGWYL K+++HP  TKGI++SLIY AADLTSQ ITL  SGS D IRT RMA YG+LIL
Sbjct: 73  GFVGWYLRKVDTHPFITKGITASLIYAAADLTSQTITLSSSGSFDLIRTARMAAYGLLIL 132

Query: 149 GPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVAR 208
           GPSQH WFNF+S I P RD L+T +KIF+GQA++GP  T++FFSYNA+LQGE+  EI AR
Sbjct: 133 GPSQHLWFNFMSTISPSRDFLSTFRKIFLGQAVFGPTITSVFFSYNASLQGESGSEIAAR 192

Query: 209 LKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKASLSKVS 265
           LKRDLLPT+   +++WP+CDF+T+KFIPVHLQPL NSSFAY+WTIYLTY ASL  V 
Sbjct: 193 LKRDLLPTLLNGVLFWPVCDFLTYKFIPVHLQPLANSSFAYIWTIYLTYMASLKAVD 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498832|gb|AFK37482.1| unknown [Lotus japonicus]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/226 (58%), Positives = 170/226 (75%), Gaps = 14/226 (6%)

Query: 54  IRDPKIFRSFNLSSRYRSHSHSFSSFSS------------NSSSSKFGFVGWYLGKLESH 101
           +R P+I R ++   +  +HSH  SS  S            +SSS K GF+GWYL KLE+H
Sbjct: 21  LRLPRIRRYYHRIDK--AHSHRKSSHPSLSPKPYPPFSSSSSSSHKLGFIGWYLRKLEAH 78

Query: 102 PLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQHYWFNFLSR 161
           P+ TK I++S+I+ A+DLTSQMITL  S S D  RT RMA+YG+LILGPSQH WFNFLS+
Sbjct: 79  PVLTKSITTSIIFAASDLTSQMITLASSASFDLKRTSRMAIYGLLILGPSQHMWFNFLSK 138

Query: 162 ILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRDLLPTMGRNL 221
           ILPK D  TTLKKIF+GQA++GP+  ++FFSYN A+QGE+  EI+ RLKRDLLPT+    
Sbjct: 139 ILPKTDVPTTLKKIFLGQAVFGPVINSVFFSYNGAVQGESCDEIITRLKRDLLPTLLGGA 198

Query: 222 VYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKASLSKVSSS 267
           ++WP CDF+TFKF+P+HLQPL+NSS AYVWTIYLTY A+ + +SS+
Sbjct: 199 LFWPPCDFVTFKFVPIHLQPLLNSSCAYVWTIYLTYMANRANLSSA 244

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103721|ref|XP_002313168.1| predicted protein [Populus trichocarpa] gi|222849576|gb|EEE87123.1| predicted protein [Populus trichocarpa]

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 119/184 (64%), Positives = 151/184 (82%)

Query: 77  SSFSSNSSSSKFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIR 136
           SS +  S  SKFGFVGWYLG ++S P+ TK  +SSLIY+AADL+SQ ++LP S + D +R
Sbjct: 1   SSKAGTSEFSKFGFVGWYLGMVKSRPVLTKSATSSLIYIAADLSSQTMSLPSSEAYDLVR 60

Query: 137 TLRMAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAA 196
            LRMA YG+LI+GPS H+WFNF+S++ PKRD +TT KKI MGQ IYGP+ T +FFS NA 
Sbjct: 61  ILRMAGYGLLIIGPSLHFWFNFVSKLFPKRDLITTFKKIIMGQTIYGPIMTVVFFSSNAC 120

Query: 197 LQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLT 256
           LQGE + EI+ARLKRDLLPTM   ++YWP+CDF+TFKFIPVHLQPLV++SF+Y+WT+Y+T
Sbjct: 121 LQGENSAEIIARLKRDLLPTMINGVMYWPVCDFVTFKFIPVHLQPLVSNSFSYLWTVYMT 180

Query: 257 YKAS 260
           Y AS
Sbjct: 181 YMAS 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056232|ref|XP_002298767.1| predicted protein [Populus trichocarpa] gi|222846025|gb|EEE83572.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 117/184 (63%), Positives = 151/184 (82%)

Query: 77  SSFSSNSSSSKFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIR 136
           SS + N++  K GF+GWYLG ++S P+ TK  +SSLIY+AADL+SQ I+LP S   D +R
Sbjct: 1   SSKAENAAFYKIGFIGWYLGMVKSRPILTKSATSSLIYIAADLSSQTISLPSSEPYDLVR 60

Query: 137 TLRMAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAA 196
           TLRMA YG+LI+GPS H+WF F+S++LPKRD +TT KKI MGQ IYGP+ T +FFS NA 
Sbjct: 61  TLRMAGYGLLIVGPSLHFWFKFVSKLLPKRDLITTFKKILMGQTIYGPIMTVVFFSLNAR 120

Query: 197 LQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLT 256
           LQGE + EI+ARLKRDL+PTM   ++YWP+CDF+TFKFIPVHLQPLV++SF+Y+WT+Y+T
Sbjct: 121 LQGENSAEIIARLKRDLVPTMINGVMYWPVCDFVTFKFIPVHLQPLVSNSFSYLWTVYMT 180

Query: 257 YKAS 260
           Y AS
Sbjct: 181 YMAS 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357152222|ref|XP_003576048.1| PREDICTED: PXMP2/4 family protein 4-like [Brachypodium distachyon]

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/189 (61%), Positives = 149/189 (78%)

Query: 75  SFSSFSSNSSSSKFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDS 134
           +F+  +  S     G V WYLG +E+ P+ TK I+++ I+  ADLTSQMITL   GS+D 
Sbjct: 63  AFAPTTRRSGPIGSGLVAWYLGSIEARPVLTKSITAATIFTVADLTSQMITLDSDGSLDL 122

Query: 135 IRTLRMAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYN 194
           IRTLRMA YGMLI GPS H+WFNF+SR +PK+D + T KK+F+GQA+YGP+   +FFSYN
Sbjct: 123 IRTLRMASYGMLISGPSLHFWFNFISRAVPKKDLVNTFKKMFLGQAVYGPIINCVFFSYN 182

Query: 195 AALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIY 254
           A LQGET  EI+ARLKRDL+PT+   L+YWP+CDFITFKFIPVHLQPLV++SF+++WTIY
Sbjct: 183 AGLQGETVPEIIARLKRDLIPTIKSGLIYWPLCDFITFKFIPVHLQPLVSNSFSFLWTIY 242

Query: 255 LTYKASLSK 263
           +TY ASL K
Sbjct: 243 ITYMASLKK 251

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
TAIR|locus:2167816	254	AT5G43140 "AT5G43140" [Arabido	0.917	0.964	0.516	1.9e-67
TAIR|locus:2060459	252	AT2G14860 "AT2G14860" [Arabido	0.662	0.702	0.621	4.3e-61
TAIR|locus:505006551	261	AT4G33905 [Arabidopsis thalian	0.644	0.659	0.633	2.7e-59
DICTYBASE|DDB_G0290631	185	DDB_G0290631 "pmp22 family pro	0.565	0.816	0.331	3e-21
TAIR|locus:2183244	288	AT5G19750 "AT5G19750" [Arabido	0.640	0.593	0.260	8e-21
DICTYBASE|DDB_G0290223	184	DDB_G0290223 "pmp22 family pro	0.614	0.891	0.295	1.1e-18
ZFIN|ZDB-GENE-040912-184	194	zgc:92599 "zgc:92599" [Danio r	0.606	0.835	0.272	5.8e-18
ASPGD|ASPL0000057632	252	AN1247 [Emericella nidulans (t	0.475	0.503	0.330	1.1e-17
TAIR|locus:2137124	190	PMP22 [Arabidopsis thaliana (t	0.614	0.863	0.273	2e-17
UNIPROTKB|Q2KIY1	196	PXMP2 "Peroxisomal membrane pr	0.625	0.852	0.274	4.7e-16

TAIR|locus:2167816 AT5G43140 "AT5G43140" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 129/250 (51%), Positives = 175/250 (70%)

Query:    18 RLSEQQQSLHGVSS-FIQPLLTNQQWRRFYCSRPLSKIRDPKIFRSFNLXXXXXXXXXXX 76
             R    ++SLHG+++  ++ + T ++    +  R + ++R    F    +           
Sbjct:     9 RFFSDRRSLHGINNALLKTVFTGRKPILGFSGRSIHELRKTGNF----VIPRVFSVSRNL 64

Query:    77 XXXXXXXXXXKFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIR 136
                       +  F+ WYL KLESHP  TK I++S+IY+AADLTSQMIT+ P+GS D IR
Sbjct:    65 TTKASSSSSKQPAFLRWYLRKLESHPFMTKSITTSVIYMAADLTSQMITMEPTGSFDLIR 124

Query:   137 TLRMAVYGMLILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAA 196
             T RMA +G++ LGPSQH WF++LS+ILPKRD LTT KKI MGQ ++GP++ T+F+SYNAA
Sbjct:   125 TARMASFGLIFLGPSQHLWFSYLSKILPKRDVLTTFKKIMMGQVLFGPVSNTVFYSYNAA 184

Query:   197 LQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLT 256
             LQGE + EIVARLKRDLLPT+   L+YWP+CDF+TFK++PVHLQPL+NSS AY+WTIYLT
Sbjct:   185 LQGENSEEIVARLKRDLLPTLKNGLMYWPVCDFVTFKYVPVHLQPLMNSSCAYIWTIYLT 244

Query:   257 YKASLSKVSS 266
             Y A+ +K  S
Sbjct:   245 YMANQTKADS 254

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2060459 AT2G14860 "AT2G14860" [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 110/177 (62%), Positives = 140/177 (79%)

Query:    87 KFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGML 146
             + GFVGWYLG ++SHP+ TK ++SSLIY+AADL+SQ I    S S D +RT RM  YG+ 
Sbjct:    70 RIGFVGWYLGMVKSHPVVTKSVTSSLIYIAADLSSQTIAKTSSESYDLVRTARMGGYGLF 129

Query:   147 ILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIV 206
             +LGP+ HYWFNF+SR+ PK+D +TT KK+ MGQ IYGP+ T IFFS NA+LQGE    I+
Sbjct:   130 VLGPTLHYWFNFMSRLFPKQDLITTFKKMAMGQTIYGPIMTVIFFSLNASLQGERGSVIL 189

Query:   207 ARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKASLSK 263
             ARLKRDLLP +   ++YWP+CDFITF+F PVHLQPLV++SF+YVWTIY+TY A+  K
Sbjct:   190 ARLKRDLLPALFNGVMYWPLCDFITFRFFPVHLQPLVSNSFSYVWTIYMTYMANREK 246

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:505006551 AT4G33905 [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 109/172 (63%), Positives = 135/172 (78%)

Query:    89 GFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLIL 148
             GF+GWYLG ++S P+ TK ++SSLIY+AADL+SQ I      S D +RT RM  YG+LIL
Sbjct:    81 GFIGWYLGMVKSRPVLTKSVTSSLIYIAADLSSQTIPQASVDSYDLVRTARMGGYGLLIL 140

Query:   149 GPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVAR 208
             GP+ HYWFN +S + PKRD +TT KK+ MGQ +YGP    +FFS NAALQGE   EIVAR
Sbjct:   141 GPTLHYWFNLMSSLFPKRDLITTFKKMAMGQTVYGPAMNVVFFSLNAALQGENGSEIVAR 200

Query:   209 LKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKAS 260
             LKRDLLPTM   ++YWP+CDFITFKF PV+LQPLV++SF+Y+WTIY+TY AS
Sbjct:   201 LKRDLLPTMLNGVMYWPLCDFITFKFCPVYLQPLVSNSFSYLWTIYITYMAS 252

GO:0005739 "mitochondrion" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

DICTYBASE|DDB_G0290631 DDB_G0290631 "pmp22 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 51/154 (33%), Positives = 83/154 (53%)

Query:    94 YLGKLESHPLTTKGISSSLIYVAADLTSQMITLP--PSGSIDSIRTLRMAVYGMLILGPS 151
             YL +L  +P+ TK ++S  +Y+ +D   Q I L        D  R++RMAV+G  + GP 
Sbjct:    15 YLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPL 74

Query:   152 QHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKR 211
              HYWF +L +  PK+       K+ + Q +  P+   +FFS    L+G++  +IV +LK+
Sbjct:    75 FHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMGILEGKSKDDIVEKLKK 134

Query:   212 DLLPTMGRNLVYWPICDFITFKFIP-VHLQPLVN 244
             D L T   + V WP  +F+ F +I  +H    +N
Sbjct:   135 DWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMN 168

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2183244 AT5G19750 "AT5G19750" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 45/173 (26%), Positives = 95/173 (54%)

Query:    87 KFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGML 146
             K+  + WY   L + P+ TK ++++L+ +  DL  Q+ T+  + S+D  RTL     G+ 
Sbjct:   111 KWSLLSWYQALLSNSPVLTKAVTAALLNLVGDLICQL-TINKTSSLDKKRTLTFTFLGLG 169

Query:   147 ILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIV 206
             ++GP+ H+W+ +LS+++        + ++ + Q ++ P+   +F S    L+G+ +  ++
Sbjct:   170 LVGPTLHFWYLYLSKVVTASGLSGAVIRLLLDQFVFAPIFVGVFLSAVVTLEGKPSN-VI 228

Query:   207 ARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKA 259
              +L+++    M  N   W    F+ F+F+P + Q L ++  A  W + L++KA
Sbjct:   229 PKLQQEWTGAMIANWQLWIPFQFLNFRFVPQNYQVLASNVVALAWNVILSFKA 281

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

DICTYBASE|DDB_G0290223 DDB_G0290223 "pmp22 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 50/169 (29%), Positives = 85/169 (50%)

Query:    93 WYLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQ 152
             WY+ KL+S P+ TK ++S+ +   + + +Q         I+    ++  V+G LI  P  
Sbjct:    16 WYMKKLKSKPIQTKALTSATLSFISSVVAQKFI--EKKKINWNAVVKFTVWG-LISSPLV 72

Query:   153 HYWFNFLSRILPK-RDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKR 211
             HYW   L R+    +D   +  K+ + Q ++ P     F+S  A L G+    I+ +L  
Sbjct:    73 HYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLAILDGKPKS-ILFKLYF 131

Query:   212 DLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKAS 260
             DL PT+  +   WP+   I F+F+P HL+ L  +   + W IYL+  A+
Sbjct:   132 DLFPTLKASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILAT 180

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040912-184 zgc:92599 "zgc:92599" [Danio rerio (taxid:7955)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 46/169 (27%), Positives = 81/169 (47%)

Query:    94 YLGKLESHPLTTKGISSSLIYVAADLTSQMITLP-------PSGSIDSIRTLRMAVYGML 146
             YL  L+ +P+ TK ++S ++    +L SQ++          P   I  +  +  A+YG+ 
Sbjct:    21 YLSLLKKYPIITKSVTSGILSALGNLLSQVLEYQKNVKENSPKKKISILGPVHFAIYGLF 80

Query:   147 ILGPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIV 206
             I GP  HY+++ L  +LP       +K++ + + I+ P    +F+    AL+G+T  ++ 
Sbjct:    81 ITGPVSHYFYHLLEVLLPTTVPYCLIKRLLLERLIFAPAFLLLFYVVMNALEGKTLADVQ 140

Query:   207 ARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYL 255
              +LK    P M  N   W    FI   ++PV  + L  +  A  W  YL
Sbjct:   141 NKLKTSYWPAMKMNWKVWTPFQFININYVPVQFRVLFANMVALFWYAYL 189

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000057632 AN1247 [Emericella nidulans (taxid:162425)]

 Score = 191 (72.3 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 45/136 (33%), Positives = 62/136 (45%)

Query:   125 TLPPSGSIDSIRTLRMAVYGMLILGPSQHYWFNFLSRILP---KRDALTTLKKIFMGQAI 181
             T PP    D  R +R   YG   + P Q  WF FLSR  P   K    + LK++   Q +
Sbjct:   114 TPPP---FDFERLIRFMSYGFF-MAPIQFQWFGFLSRTFPLAKKNPTFSALKRVACDQLL 169

Query:   182 YGPLTTTIFFSYNAALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQ- 240
             + P     FFSY    +G     +  + +   LPT+  N V WP    + F+ +P+  Q 
Sbjct:   170 FAPFGLVCFFSYMTIAEGGGKRALTRKFQDVYLPTLKANFVLWPAVQVLNFRVVPIQFQI 229

Query:   241 PLVNSSFAYVWTIYLT 256
             P V SS    WT YL+
Sbjct:   230 PFV-SSVGIAWTAYLS 244

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0000324 "fungal-type vacuole" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2137124 PMP22 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 46/168 (27%), Positives = 86/168 (51%)

Query:    94 YLGKLESHPLTTKGISSSLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLILGPSQH 153
             YL +L+ HPL TK I++ ++   +D+ SQ ++      I   R L   ++    LGP+ H
Sbjct:    14 YLSQLQQHPLRTKAITAGVLSGVSDVVSQKLS--GIQKIQLRRVLLKVIFAGGFLGPAGH 71

Query:   154 YWFNFLSRILP-KRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRD 212
             ++  +L +    K+D  T  KK+ + Q    PL   +F  Y   +   T   +V    + 
Sbjct:    72 FFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKK 131

Query:   213 LLPTMGRNL-VYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKA 259
               PT+      ++P+  +I +K++P+H + +++S  A+ W I+LT +A
Sbjct:   132 TYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRA 179

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IDA

UNIPROTKB|Q2KIY1 PXMP2 "Peroxisomal membrane protein 2" [Bos taurus (taxid:9913)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 48/175 (27%), Positives = 80/175 (45%)

Query:    94 YLGKLESHPLTTKGISSSLIYVAADLTSQMITLPP-----SGSIDSIRTLRMAVYGMLIL 148
             YL  L  +P+ TK  +S ++    +  +Q+I         S  +D    LR A+YG    
Sbjct:    25 YLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGPLRYAIYGFFFT 84

Query:   149 GPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVAR 208
             GP  H+++  + R +P    L  +K++ + + ++ P   ++FF     L+G+ T    A+
Sbjct:    85 GPLGHFFYLLMERWIPSEVPLAGIKRLLLDRLLFAPAFLSLFFLVMNFLEGQDTAAFAAK 144

Query:   209 LKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKASLSK 263
             +K    P +  N   W    FI   +IPV  + L  +  A  W  YL   ASL K
Sbjct:   145 MKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAYL---ASLGK 196

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014942001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (241 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
pfam04117	68	pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family	5e-17

>gnl|CDD|202894 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family

 Score = 73.0 bits (180), Expect = 5e-17
 Identities = 23/67 (34%), Positives = 33/67 (49%)

Query: 194 NAALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTI 253
              L+G++  EI  +LK    PT+  N   WP   FI F F+PVH + L  +     W  
Sbjct: 1   MGLLEGKSLEEIKEKLKEKFWPTLKANWKVWPPVQFINFAFVPVHYRVLFVNLVGIGWNT 60

Query: 254 YLTYKAS 260
           YL+Y  +
Sbjct: 61  YLSYVNN 67

The 22-kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information. Mpv17 is a closely related peroxisomal protein. In mouse, the Mpv17 protein is involved in the development of early-onset glomerulosclerosis. More recently a homolog of Mpv17 in S. cerevisiae has been been found to be an integral membrane protein of the inner mitochondrial membrane where it has been proposed to have a role in ethanol metabolism and tolerance during heat-shock. Defects in MPV17 is associated with mitochondrial DNA depletion syndrome (MDDS) and Navajo neurohepatopathy (NNH). MDDS is a clinically heterogeneous group of disorders characterized by a reduction in mitochondrial DNA (mtDNA) copy number. Primary mtDNA depletion is inherited as an autosomal recessive trait and may affect single organs, typically muscle or liver, or multiple tissues. Individuals with the hepatocerebral form of mitochondrial DNA depletion syndrome have early progressive liver failure and neurologic abnormalities, hypoglycemia, and increased lactate in body fluids. NNH is an autosomal recessive disease that is prevalent among Navajo children in the South Western states of America. The major clinical features are hepatopathy, peripheral neuropathy, corneal anesthesia and scarring, acral mutilation, cerebral leukoencephalopathy, failure to thrive, and recurrent metabolic acidosis with intercurrent infections. Infantile, childhood, and classic forms of NNH have been described. Mitochondrial DNA depletion was detected in the livers of patients, suggesting a primary defect in mtDNA maintenance. Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
KOG1944	222	consensus Peroxisomal membrane protein MPV17 and r	100.0
PF04117	68	Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR0	99.87

>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]

Probab=100.00  E-value=9.1e-40  Score=292.14  Aligned_cols=181  Identities=36%  Similarity=0.716  Sum_probs=167.9

Q ss_pred             CcchhHHHHHHHHH-hhhCChhHHHHHHHHHH-HHHHHHHHhhcCCC---CCCCcHHHHHHHHHHHHhhhhhhHhHHHHH
Q 024459           84 SSSKFGFVGWYLGK-LESHPLTTKGISSSLIY-VAADLTSQMITLPP---SGSIDSIRTLRMAVYGMLILGPSQHYWFNF  158 (267)
Q Consensus        84 ~~~~~~l~~~Y~~~-L~~~Pl~Tk~iTsgvl~-~~gDllAQ~i~~~~---~~~~D~~Rt~r~a~~G~~~~GP~~h~Wy~~  158 (267)
                      +....++..|+... ...+|+.+++++.+.+. ..||+++|.++...   ...+|+.|++||+++|+++.||.+|+||..
T Consensus        31 ~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~  110 (222)
T KOG1944|consen   31 SLAQNGLVLWLLLKRFSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRL  110 (222)
T ss_pred             hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHH
Confidence            34444466666555 57799999999999888 99999999998765   578999999999999999999999999999


Q ss_pred             HhhhcCCCchhHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHhhchHHHHhhccccchHHHhhhhceecCC
Q 024459          159 LSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVH  238 (267)
Q Consensus       159 Ldrlfp~~~~~~vl~KVllDQ~v~aP~~~~~F~~~~~~leG~s~~~i~~~lk~~~~~~l~~sw~~Wpp~q~INF~~VP~~  238 (267)
                      ||+++|+++..++++|+++||++++|+.+.+|+.+++++||++.++++++++++++|+++++|++||++|++||.+||++
T Consensus       111 L~~~~p~~~~~~~~~kvl~dql~~~P~~~~~ff~~~~~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~  190 (222)
T KOG1944|consen  111 LSKLFPKKTLITVVKKVLLDQLVFAPLFIVVFFLLMGLLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQ  190 (222)
T ss_pred             HHHHccCccHHHHHHHHHHhhhhhchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHhccccc
Q 024459          239 LQPLVNSSFAYVWTIYLTYKASLSKV  264 (267)
Q Consensus       239 ~Rvlf~n~vs~~Wn~yLS~~a~~~~~  264 (267)
                      +|++++|+++++|++|||+++++.++
T Consensus       191 ~rvl~~~~vsl~W~~~Ls~~~~~~~~  216 (222)
T KOG1944|consen  191 YRVLFVNIVSLVWNTYLSYKNASLVE  216 (222)
T ss_pred             ceehhhhhHHHHHHHHHHHHhhcccc
Confidence            99999999999999999999999844

>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes

Probab=99.87  E-value=6.7e-23  Score=151.29  Aligned_cols=68  Identities=31%  Similarity=0.707  Sum_probs=66.2

Q ss_pred             HHhhcCCChHHHHHHHhhchHHHHhhccccchHHHhhhhceecCCcchhhhhHHHHHHHHHHHHHhcc
Q 024459          194 NAALQGETTGEIVARLKRDLLPTMGRNLVYWPICDFITFKFIPVHLQPLVNSSFAYVWTIYLTYKASL  261 (267)
Q Consensus       194 ~~~leG~s~~~i~~~lk~~~~~~l~~sw~~Wpp~q~INF~~VP~~~Rvlf~n~vs~~Wn~yLS~~a~~  261 (267)
                      |+++||++++++++++++|++++++++|++|||+|++||.|||+++|++|+|+++++||+|||+++|+
T Consensus         1 Mg~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r   68 (68)
T PF04117_consen    1 MGLLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR   68 (68)
T ss_pred             CCcccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999999999999999999999999999999999999985

PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 7e-07
 Identities = 48/327 (14%), Positives = 103/327 (31%), Gaps = 86/327 (26%)

Query: 3   SKCKSVKTL-----SYSFLLRLSEQQQSLHGVSSFIQPLLTNQQWRRFYCSRP------- 50
             C S +T+        + +  +   +S H  +  ++      + RR   S+P       
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 51  LSKIRDPKIFRSFNLSSR-----------------YRSH---SHSFSSFSSNSSSSKFG- 89
           L  +++ K + +FNLS +                   +H    H   + + +   S    
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 90  FVGWYLGKL-----ESHPLTTKGISSSLI----------YVAADLTSQMITLPPSGSIDS 134
           ++      L      ++P     I+ S+           +V  D  + +I      S++ 
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII----ESSLNV 365

Query: 135 IRTLRM-AVYGML-ILGPSQH--------YWFNFLSRILPKRDALTTLKKIFMGQAIYGP 184
           +       ++  L +  PS H         WF+ +   +     +  L K  + +     
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV--MVVVNKLHKYSLVEKQPKE 423

Query: 185 LTTTI---FFSYNAALQGETT--GEIVARLK-------RDLLPTMGRNLVYWPICDFITF 232
            T +I   +      L+ E      IV            DL+P       Y+       +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ--YF-------Y 474

Query: 233 KFIPVHLQPLVNS-SFAYVWTIYLTYK 258
             I  HL+ + +         ++L ++
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFR 501

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 45/286 (15%), Positives = 82/286 (28%), Gaps = 71/286 (24%)

Query: 9   KTLSYSFLLRLSEQQQSLHGVSSFIQPLL-------------TNQQWRRFYCSRPLSKIR 55
           +  S   L  L  + Q L        P               T   W+   C + L+ I 
Sbjct: 302 EVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-LTTII 359

Query: 56  DPKIFRSFN-LSSR-YRSHSHSFSSFSSNS--SSSKFGFVGWY----------LGKLESH 101
           +     S N L    YR      S F  ++   +     + W+          + KL  +
Sbjct: 360 E----SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKY 414

Query: 102 PLTTKGISSSLIYVAADLTSQMITLPPSGS--------IDSIRTLRMAVYGMLILGPSQH 153
            L  K    S I +   +   +       +        +D     +      LI      
Sbjct: 415 SLVEKQPKESTISIP-SI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 154 YWFNFLSRILPKR---DALTTLKKI-----FMGQAI---------YGPLTTTI--FFSYN 194
           Y+++ +   L      + +T  + +     F+ Q I          G +  T+     Y 
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 195 AALQ-GETTGEIVARLKRDL---LPTMGRNLVYWPICDFITFKFIP 236
             +   +   E   RL   +   LP +  NL+     D +    + 
Sbjct: 532 PYICDNDPKYE---RLVNAILDFLPKIEENLICSKYTDLLRIALMA 574

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00