Citrus Sinensis ID: 024465

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MIHFISLTSPADFTNKEFVFREKIFLQLLSRNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccccccEEEEcccccccEEEEEEEcccHHHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcccccccHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccEEEEccccHccccccccccccccccccccEEEEccccccccEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccccEEEcEEEEEEccccccEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mihfisltspadftnkeFVFREKIFLQLLSRNILFasvngtnavsptplksdqdadyipmphvlidqdsnsdatIVQLSFGDRLGALIDTMNALKDLGLDvakgtvntegsvkQTKFFITRldtgrkvedpdLLERIRLTIINNLlkyhpesseqlamgeafgikapekkldvDIATHihvkedgpkrslLYIETADRPGLLVEIMKIIADvnvdvesaeidteglvakdkfhvsyggaalnSSLSQVLVNCLRYYlrrpetdidsy
Flexible Loop (DISEMBL)
mihfisltspadftnKEFVFREKIFLQLLSRNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAkgtvntegsvkqtkffitrldtgrkvedpdllERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHihvkedgpkrsllYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGaalnsslsQVLVNCLRYYlrrpetdidsy
Low Complexity Region (SEG)
MIHFISLTSPADFTNKEFVFREKIFLQLLSRNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Disordered region (IsUnstruct)
***FISLTSPADFTNKEFVFREKIFLQLLSRNILFASVNGTNA************DYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP*****LAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR*********
Disordered Region (DISOPRED)
MIHFISLTSPADFTNKEFVFREKIFLQLLSRNILF*************************PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG*********VLVNCLRY************
Disordered Region (DISEMBL)
MIHFISLTSPADFTNKEFVFREKIFLQLLSRNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Disordered Region (DISPRO)
*I**ISLTSPADFTNKEFVFREKIFLQLLSRNILFASVN*****************YIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRP*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIHFISLTSPADFTNKEFVFREKIFLQLLSRNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q0J709	283	Unknown protein DS12 from	no	no	0.812	0.766	0.594	3e-72
P83643	283	Unknown protein DS12 from	N/A	no	0.812	0.766	0.594	3e-72
Q9AC53	940	[Protein-PII] uridylyltra	yes	no	0.576	0.163	0.288	3e-05
B8GWX0	940	[Protein-PII] uridylyltra	yes	no	0.576	0.163	0.288	3e-05
Q7NTY6	856	[Protein-PII] uridylyltra	yes	no	0.262	0.081	0.415	5e-05
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.333	0.093	0.307	0.0004

>sp|Q0J709|UP12_ORYSJ Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2

 Score =  271 bits (694), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/217 (59%), Positives = 168/217 (77%)

Query: 51  SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 110
           S  + D +P P V+IDQDS+ DATIV+++ GDRLG L+DTMNALK+LGL+V K +V  + 
Sbjct: 67  SSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDS 126

Query: 111 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKK 170
           + K  K  IT+L TGRK+ +P+LLE +RLTIINN+++YHPE+S QLA+G  FG + P + 
Sbjct: 127 TGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTEL 186

Query: 171 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 230
           +DVDIATHI + +DGP RSLL +ETADRPGLLV+++KII D+N+ V+S E DTEGL+AK 
Sbjct: 187 VDVDIATHIDIYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKA 246

Query: 231 KFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267
           KFHVSY G  L  +L QVL N LRY+LRRP T+  SY
Sbjct: 247 KFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 283

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P83643|UP12_ORYSI Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_027381 PE=1 SV=2

 Score =  271 bits (694), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/217 (59%), Positives = 168/217 (77%)

Query: 51  SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 110
           S  + D +P P V+IDQDS+ DATIV+++ GDRLG L+DTMNALK+LGL+V K +V  + 
Sbjct: 67  SSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDS 126

Query: 111 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKK 170
           + K  K  IT+L TGRK+ +P+LLE +RLTIINN+++YHPE+S QLA+G  FG + P + 
Sbjct: 127 TGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTEL 186

Query: 171 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 230
           +DVDIATHI + +DGP RSLL +ETADRPGLLV+++KII D+N+ V+S E DTEGL+AK 
Sbjct: 187 VDVDIATHIDIYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKA 246

Query: 231 KFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267
           KFHVSY G  L  +L QVL N LRY+LRRP T+  SY
Sbjct: 247 KFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 283

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=glnD PE=3 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 70/170 (41%), Gaps = 16/170 (9%)

Query: 71  SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRK--V 128
           S+A  V ++  DR G   D   A+  LG +V    V T    +    F  +  TG     
Sbjct: 733 SNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGC 792

Query: 129 EDPDLLERIRLTI----INNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKED 184
           E+P  L R+   +      + L   P    +     AF I AP   +D D +    V E 
Sbjct: 793 ENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAI-APSVTIDNDASNDATVVEA 851

Query: 185 GPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 234
             +         DRPGLL  + K +AD  + ++SA ID  G  A D F+V
Sbjct: 852 SGR---------DRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYV 892

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=glnD PE=3 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 70/170 (41%), Gaps = 16/170 (9%)

Query: 71  SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRK--V 128
           S+A  V ++  DR G   D   A+  LG +V    V T    +    F  +  TG     
Sbjct: 733 SNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGC 792

Query: 129 EDPDLLERIRLTI----INNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKED 184
           E+P  L R+   +      + L   P    +     AF I AP   +D D +    V E 
Sbjct: 793 ENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAI-APSVTIDNDASNDATVVEA 851

Query: 185 GPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 234
             +         DRPGLL  + K +AD  + ++SA ID  G  A D F+V
Sbjct: 852 SGR---------DRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYV 892

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q7NTY6|GLND_CHRVO [Protein-PII] uridylyltransferase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=glnD PE=3 SV=1

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 183 EDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALN 242
           +D     +L I   DRPGLL  I K++AD  ++V SA+I T G  A+D F VS  GAAL 
Sbjct: 781 DDKDSDFILSIVAGDRPGLLARIAKVLADYRLNVRSAKIMTLGGRAEDSFQVS--GAALK 838

Query: 243 S-----SLSQVLVNCLR 254
                 +L   L+  LR
Sbjct: 839 DDKTALALEAALITALR 855

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 45.4 bits (106), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 55  ADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 114
           A ++P P V+ID  ++   T+++++  DR G L D  +AL    L ++   + T G ++ 
Sbjct: 851 AIHVP-PRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYG-MRA 908

Query: 115 TKFFITRLDTGRKVEDPDLLERIRLTIINNL 145
              F  R   G K+ DP  L R+R T++ +L
Sbjct: 909 VDVFYVRDLLGMKITDPVRLARLRETLLASL 939

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
449446279	287	PREDICTED: unknown protein DS12 from 2D-	0.973	0.905	0.753	1e-114
449494163	283	PREDICTED: unknown protein DS12 from 2D-	0.958	0.904	0.746	1e-112
224110178	217	predicted protein [Populus trichocarpa]	0.812	1.0	0.917	1e-110
224097618	218	predicted protein [Populus trichocarpa]	0.816	1.0	0.899	1e-110
388495334	282	unknown [Lotus japonicus]	0.891	0.843	0.820	1e-108
21592963	301	unknown [Arabidopsis thaliana]	0.970	0.860	0.754	1e-107
15238305	301	ACT domain-containing protein [Arabidops	0.970	0.860	0.754	1e-107
255560331	214	amino acid binding protein, putative [Ri	0.797	0.995	0.897	1e-107
356575488	282	PREDICTED: unknown protein DS12 from 2D-	0.966	0.914	0.759	1e-107
359486976	280	PREDICTED: unknown protein DS12 from 2D-	0.932	0.889	0.784	1e-106

>gi|449446279|ref|XP_004140899.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Cucumis sativus]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/276 (75%), Positives = 233/276 (84%), Gaps = 16/276 (5%)

Query: 6   SLTSPADFTNKEFVFREKIFLQ--------------LLSRNILFASVNGTNAVSPTPLKS 51
           S TSP+ F  +   F  +                  LL  NIL AS NG NAVSP  L  
Sbjct: 14  SYTSPSPFPCRSRFFEPEFVAHVPHRCFGGGARLAFLLKWNILSASTNGLNAVSPASLMF 73

Query: 52  DQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 111
           DQD+  +PMP VLIDQDS+S+ATIV++SFGDRLGALIDTM ALKDLGLDVAKGTV+TEGS
Sbjct: 74  DQDS--VPMPIVLIDQDSDSNATIVEVSFGDRLGALIDTMRALKDLGLDVAKGTVSTEGS 131

Query: 112 VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKL 171
           VKQTKF++TRLD+GRKVEDPDLLE IRLTIINNLLKYHPESS+QLAMGEAFGI+ PEKKL
Sbjct: 132 VKQTKFYLTRLDSGRKVEDPDLLESIRLTIINNLLKYHPESSQQLAMGEAFGIQPPEKKL 191

Query: 172 DVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK 231
           DVDIATH+HVK DGPKRSLLY+ETADRPGLL+E++K++AD+N+DVESAEIDTEGLVAKDK
Sbjct: 192 DVDIATHVHVKADGPKRSLLYLETADRPGLLLEVIKMLADINIDVESAEIDTEGLVAKDK 251

Query: 232 FHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267
           FHVSYGGAALNSSLSQV+VNCLRYYLRRPETDIDSY
Sbjct: 252 FHVSYGGAALNSSLSQVVVNCLRYYLRRPETDIDSY 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494163|ref|XP_004159466.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Cucumis sativus]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/276 (74%), Positives = 230/276 (83%), Gaps = 20/276 (7%)

Query: 6   SLTSPADFTNKEFVFREKIFLQ--------------LLSRNILFASVNGTNAVSPTPLKS 51
           S TSP+ F  +   F  +                  LL  NIL AS NG NAVSP  L  
Sbjct: 14  SYTSPSPFPCRSRFFEPEFVAHVPHRCFGGGARLAFLLKWNILSASTNGLNAVSPASL-- 71

Query: 52  DQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 111
               D +PMP VLIDQDS+S+ATIV++SFGDRLGALIDTM ALKDLGLDVAKGTV+TEGS
Sbjct: 72  ----DSVPMPIVLIDQDSDSNATIVEVSFGDRLGALIDTMRALKDLGLDVAKGTVSTEGS 127

Query: 112 VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKL 171
           VKQTKF++TRLD+GRKVEDPDLLE IRLTIINNLLKYHPESS+QLAMGEAFGI+ PEKKL
Sbjct: 128 VKQTKFYLTRLDSGRKVEDPDLLESIRLTIINNLLKYHPESSQQLAMGEAFGIQPPEKKL 187

Query: 172 DVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK 231
           DVDIATH+HVK DGPKRSLLY+ETADRPGLL+E++K++AD+N+DVESAEIDTEGLVAKDK
Sbjct: 188 DVDIATHVHVKADGPKRSLLYLETADRPGLLLEVIKMLADINIDVESAEIDTEGLVAKDK 247

Query: 232 FHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267
           FHVSYGGAALNSSLSQV+VNCLRYYLRRPETDIDSY
Sbjct: 248 FHVSYGGAALNSSLSQVVVNCLRYYLRRPETDIDSY 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110178|ref|XP_002315438.1| predicted protein [Populus trichocarpa] gi|222864478|gb|EEF01609.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/217 (91%), Positives = 208/217 (95%)

Query: 51  SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 110
           S+QDAD +PMP VLIDQDS+SDATIVQLSFGDRLGALIDTMNALK LGLDVAKGTV T+G
Sbjct: 1   SEQDADLVPMPVVLIDQDSDSDATIVQLSFGDRLGALIDTMNALKHLGLDVAKGTVLTDG 60

Query: 111 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKK 170
            VKQTKFFITRLDTGRKVEDPD+LERIRLTIINNLLKYHPESSE+LAMGEAFGIKAPEKK
Sbjct: 61  PVKQTKFFITRLDTGRKVEDPDMLERIRLTIINNLLKYHPESSERLAMGEAFGIKAPEKK 120

Query: 171 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 230
           LDVDI TH+HVKEDGPKRSLL IETADRPGLLVEI+KIIADVN+DVESAEIDTEGLVAKD
Sbjct: 121 LDVDITTHVHVKEDGPKRSLLCIETADRPGLLVEIIKIIADVNIDVESAEIDTEGLVAKD 180

Query: 231 KFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267
           KFHVSY GAAL SSLSQVLVNCLRYYLRRPETDIDSY
Sbjct: 181 KFHVSYRGAALTSSLSQVLVNCLRYYLRRPETDIDSY 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097618|ref|XP_002311013.1| predicted protein [Populus trichocarpa] gi|222850833|gb|EEE88380.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/218 (89%), Positives = 210/218 (96%)

Query: 50  KSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 109
           K +QDAD +P+P VLIDQDS+S++TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTV TE
Sbjct: 1   KPEQDADGVPIPVVLIDQDSDSESTIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVLTE 60

Query: 110 GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEK 169
           G VKQTKFFITRLD+GRKVEDPD+LERIRLTIINNLLKYHPESSE+LAMGEAFGIKAPEK
Sbjct: 61  GPVKQTKFFITRLDSGRKVEDPDMLERIRLTIINNLLKYHPESSERLAMGEAFGIKAPEK 120

Query: 170 KLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK 229
           KLDVDI TH+HVKEDGPKRSLL +ETADRPGLLVEI+KIIADVN+DVESAEIDTEGLVAK
Sbjct: 121 KLDVDITTHVHVKEDGPKRSLLCVETADRPGLLVEIIKIIADVNIDVESAEIDTEGLVAK 180

Query: 230 DKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267
           DKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETD +SY
Sbjct: 181 DKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDTESY 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495334|gb|AFK35733.1| unknown [Lotus japonicus]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/240 (82%), Positives = 217/240 (90%), Gaps = 2/240 (0%)

Query: 30  SRNILFASVNGTNAVSPTPL--KSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGAL 87
           ++NIL AS    NAV    L  K ++D + +PMP VLIDQDS+S+ATIVQLSFGDRLGAL
Sbjct: 43  NKNILNASAYDLNAVGSASLVSKFNRDHESVPMPMVLIDQDSDSEATIVQLSFGDRLGAL 102

Query: 88  IDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 147
           IDTM ALKDLGLDV+KGTV+TEGSVKQTKFFIT+ +TGRKVEDPD+LERIRLTII+NLLK
Sbjct: 103 IDTMKALKDLGLDVSKGTVSTEGSVKQTKFFITQSNTGRKVEDPDMLERIRLTIISNLLK 162

Query: 148 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMK 207
           YHPESSEQLAMGE FGIKAP KKLD+D AT I VKEDGPKRSLLYIETADRPGLLVEI+K
Sbjct: 163 YHPESSEQLAMGEVFGIKAPVKKLDLDFATRIQVKEDGPKRSLLYIETADRPGLLVEIIK 222

Query: 208 IIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267
           +IADVN+DVESAEIDTEGL+AKDKFHVSYGGAALNSS+SQVLVNCLRYYLR PETDIDSY
Sbjct: 223 VIADVNIDVESAEIDTEGLIAKDKFHVSYGGAALNSSMSQVLVNCLRYYLRTPETDIDSY 282

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592963|gb|AAM64912.1| unknown [Arabidopsis thaliana]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/261 (75%), Positives = 226/261 (86%), Gaps = 2/261 (0%)

Query: 9   SPADFTNK-EFVFREKIFLQLLSRNILFASVNGTN-AVSPTPLKSDQDADYIPMPHVLID 66
           SPA F ++ +FV      L    +N ++AS+N  + A +P+  KS+ D D +PMP V+ID
Sbjct: 41  SPALFDDRRKFVGGVMSLLTKSIKNRVYASINSIDSAATPSYPKSEDDDDVVPMPMVMID 100

Query: 67  QDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGR 126
           QD++ +ATIVQLSFG+RLGALIDTM ALKDLGLDV KGTV+TEGS+KQTKF IT+ DTGR
Sbjct: 101 QDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSITKRDTGR 160

Query: 127 KVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP 186
           KVEDPDLLE+IRLTIINNLLKYHPE SEQLAMGE FGIKAPEKK+DVDIATHIHVKEDGP
Sbjct: 161 KVEDPDLLEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKKIDVDIATHIHVKEDGP 220

Query: 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLS 246
           KRSLL IETADRPGL+VE++K++ADVN+DVESAEIDTEGLVAKDKFHVSY G ALN SLS
Sbjct: 221 KRSLLVIETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKDKFHVSYQGQALNRSLS 280

Query: 247 QVLVNCLRYYLRRPETDIDSY 267
           QVLVNCLRY+LRRPETDIDSY
Sbjct: 281 QVLVNCLRYFLRRPETDIDSY 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238305|ref|NP_196094.1| ACT domain-containing protein [Arabidopsis thaliana] gi|7413536|emb|CAB86016.1| putative protein [Arabidopsis thaliana] gi|9758449|dbj|BAB08978.1| unnamed protein product [Arabidopsis thaliana] gi|18252933|gb|AAL62393.1| putative protein [Arabidopsis thaliana] gi|21389645|gb|AAM48021.1| putative protein [Arabidopsis thaliana] gi|332003394|gb|AED90777.1| ACT domain-containing protein [Arabidopsis thaliana] gi|347949480|gb|AEP31953.1| ACT domain-containing protein [Arabidopsis thaliana]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/261 (75%), Positives = 226/261 (86%), Gaps = 2/261 (0%)

Query: 9   SPADFTNK-EFVFREKIFLQLLSRNILFASVNGTN-AVSPTPLKSDQDADYIPMPHVLID 66
           SPA F ++ +FV      L    +N ++AS+N  + A +P+  KS+ D D +PMP V+ID
Sbjct: 41  SPALFDDRRKFVGGVMSLLTKSIKNRVYASINSIDSAATPSYPKSEDDDDVVPMPMVMID 100

Query: 67  QDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGR 126
           QD++ +ATIVQLSFG+RLGALIDTM ALKDLGLDV KGTV+TEGS+KQTKF IT+ DTGR
Sbjct: 101 QDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSITKRDTGR 160

Query: 127 KVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP 186
           KVEDPDLLE+IRLTIINNLLKYHPE SEQLAMGE FGIKAPEKK+DVDIATHIHVKEDGP
Sbjct: 161 KVEDPDLLEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKKIDVDIATHIHVKEDGP 220

Query: 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLS 246
           KRSLL IETADRPGL+VE++K++ADVN+DVESAEIDTEGLVAKDKFHVSY G ALN SLS
Sbjct: 221 KRSLLVIETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKDKFHVSYQGQALNRSLS 280

Query: 247 QVLVNCLRYYLRRPETDIDSY 267
           QVLVNCLRY+LRRPETDIDSY
Sbjct: 281 QVLVNCLRYFLRRPETDIDSY 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560331|ref|XP_002521182.1| amino acid binding protein, putative [Ricinus communis] gi|223539629|gb|EEF41213.1| amino acid binding protein, putative [Ricinus communis]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/214 (89%), Positives = 207/214 (96%), Gaps = 1/214 (0%)

Query: 54  DADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK 113
           DAD +PMP +LIDQDS+SDAT VQ+SFGDRLGALIDTM ALKDLGLDVAKG+V TEGSVK
Sbjct: 2   DAD-VPMPVLLIDQDSDSDATSVQVSFGDRLGALIDTMKALKDLGLDVAKGSVLTEGSVK 60

Query: 114 QTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDV 173
           Q KFFITRLD+GRKVEDPD+LERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPE+KLDV
Sbjct: 61  QIKFFITRLDSGRKVEDPDMLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPERKLDV 120

Query: 174 DIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFH 233
           DIATHIHVK+DGPKRSLLYIETADRPGLLVE++KI+AD+NVDVESAEIDTEGLVAKDKFH
Sbjct: 121 DIATHIHVKDDGPKRSLLYIETADRPGLLVEMIKIMADINVDVESAEIDTEGLVAKDKFH 180

Query: 234 VSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267
           VSY GAALNSS+SQVLVNCLRYYLRRPETD+DSY
Sbjct: 181 VSYRGAALNSSMSQVLVNCLRYYLRRPETDVDSY 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575488|ref|XP_003555872.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Glycine max]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/266 (75%), Positives = 223/266 (83%), Gaps = 8/266 (3%)

Query: 2   IHFISLTSPADFTNKEFVFREKIFLQLLSRNILFASVNGTNAVSPTPLKSDQDADYIPMP 61
           I   SL S A F +   + R+K        NIL+AS    NAV    L+S  + D +PMP
Sbjct: 25  IPLFSLPSDAFFRSPTSLSRDK--------NILYASAYDLNAVGSASLQSGDNPDSLPMP 76

Query: 62  HVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 121
            VLIDQ+S+S+ATIVQLSFG+RLGAL+DTM ALKDLGLDV+KGTV+TEG VKQTKFFIT+
Sbjct: 77  IVLIDQESDSEATIVQLSFGNRLGALLDTMKALKDLGLDVSKGTVSTEGLVKQTKFFITQ 136

Query: 122 LDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHV 181
            DTGRKVEDPD+LERIRLTIINNLLKYHPESSE LAMGE FGIKAP+KKLD DI T I V
Sbjct: 137 SDTGRKVEDPDMLERIRLTIINNLLKYHPESSELLAMGEVFGIKAPKKKLDDDIKTRIQV 196

Query: 182 KEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAAL 241
           KEDGPKRSLLYIETADRPGLLVEI+K+IADVN+DVESAEIDTEGLVAKD FHVSYGGAAL
Sbjct: 197 KEDGPKRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEGLVAKDTFHVSYGGAAL 256

Query: 242 NSSLSQVLVNCLRYYLRRPETDIDSY 267
           NSS+SQVLVNCLRYYLR PETDIDSY
Sbjct: 257 NSSMSQVLVNCLRYYLRTPETDIDSY 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486976|ref|XP_002268975.2| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/250 (78%), Positives = 217/250 (86%), Gaps = 1/250 (0%)

Query: 18  FVFREKIFLQLLSRNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQ 77
           F F +  F    S + L AS +G ++V    L  D D+DY+P P VLIDQDS+S ATIVQ
Sbjct: 32  FAFAQPRFTLSASTSALHASNDGIDSVPSISLSFDPDSDYVPTPMVLIDQDSDSVATIVQ 91

Query: 78  LSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERI 137
           LSFGDRLGAL+DTM ALK L LDV KGTV TEGSV QTKFFITR+D GRKVEDPD+LERI
Sbjct: 92  LSFGDRLGALVDTMKALKGLDLDVQKGTVTTEGSVTQTKFFITRID-GRKVEDPDMLERI 150

Query: 138 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD 197
           RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVD+ATHIHVK+DGPKRSLLYIETAD
Sbjct: 151 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDVATHIHVKDDGPKRSLLYIETAD 210

Query: 198 RPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL 257
           RPGLL+EI++II DVNVDVESAEIDTEGLVAKDKFHVSY GAAL+SSLSQV++N LRYYL
Sbjct: 211 RPGLLLEIVEIITDVNVDVESAEIDTEGLVAKDKFHVSYRGAALSSSLSQVMINSLRYYL 270

Query: 258 RRPETDIDSY 267
           RRPET++DSY
Sbjct: 271 RRPETEVDSY 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
TAIR|locus:2175458	301	ACR12 "ACT domain repeats 12"	0.970	0.860	0.754	8.2e-99
TAIR|locus:2015616	290	ACR11 "ACT domain repeats 11"	0.940	0.865	0.592	1.6e-72
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.299	0.175	0.296	5e-09
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.299	0.175	0.308	4.6e-08
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.303	0.180	0.268	2e-07
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.310	0.191	0.285	6.5e-07
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.299	0.181	0.333	1.8e-06
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.310	0.174	0.273	3.7e-06
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.415	0.245	0.243	1e-05
TIGR_CMR|SPO_0397	908	SPO_0397 "protein-P-II uridyly	0.614	0.180	0.285	0.00012

TAIR|locus:2175458 ACR12 "ACT domain repeats 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 197/261 (75%), Positives = 226/261 (86%)

Query:     9 SPADFTNK-EFVFREKIFLQLLSRNILFASVNGTN-AVSPTPLKSDQDADYIPMPHVLID 66
             SPA F ++ +FV      L    +N ++AS+N  + A +P+  KS+ D D +PMP V+ID
Sbjct:    41 SPALFDDRRKFVGGVMSLLTKSIKNRVYASINSIDSAATPSYPKSEDDDDVVPMPMVMID 100

Query:    67 QDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGR 126
             QD++ +ATIVQLSFG+RLGALIDTM ALKDLGLDV KGTV+TEGS+KQTKF IT+ DTGR
Sbjct:   101 QDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSITKRDTGR 160

Query:   127 KVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP 186
             KVEDPDLLE+IRLTIINNLLKYHPE SEQLAMGE FGIKAPEKK+DVDIATHIHVKEDGP
Sbjct:   161 KVEDPDLLEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKKIDVDIATHIHVKEDGP 220

Query:   187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLS 246
             KRSLL IETADRPGL+VE++K++ADVN+DVESAEIDTEGLVAKDKFHVSY G ALN SLS
Sbjct:   221 KRSLLVIETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKDKFHVSYQGQALNRSLS 280

Query:   247 QVLVNCLRYYLRRPETDIDSY 267
             QVLVNCLRY+LRRPETDIDSY
Sbjct:   281 QVLVNCLRYFLRRPETDIDSY 301

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2015616 ACR11 "ACT domain repeats 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 151/255 (59%), Positives = 190/255 (74%)

Query:    13 FTNKEFVFREKIFLQLLSRNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSD 72
             F +K  V  E++ L  L    + AS N T   +     S  D+D +P P V+IDQDS+ D
Sbjct:    40 FVDKPLVNLERLRLSTLK---IRAS-NATAVENGKQEGSAADSDKVPTPVVIIDQDSDPD 95

Query:    73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPD 132
             AT+++++FGDRLGAL+DTMNALK+LGL+V K  V  + S K  KF ITR D+GRKVEDP+
Sbjct:    96 ATVLEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAITRADSGRKVEDPE 155

Query:   133 LLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLY 192
             LLE IRLT+INNLL++HPESS QLAMG AFG+  P + +DVDIATHI +++DGP RSLL+
Sbjct:   156 LLEAIRLTVINNLLEFHPESSSQLAMGAAFGVLPPTEPIDVDIATHITIEDDGPDRSLLF 215

Query:   193 IETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNC 252
             IE+ADRPGLLVE++KII+D++V VES E DTEGL+AK KFHVSY   AL   L QVL N 
Sbjct:   216 IESADRPGLLVELVKIISDISVAVESGEFDTEGLLAKVKFHVSYRNKALIKPLQQVLANS 275

Query:   253 LRYYLRRPETDIDSY 267
             LRY+LRRP TD  S+
Sbjct:   276 LRYFLRRPSTDESSF 290

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
 Identities = 24/81 (29%), Positives = 45/81 (55%)

Query:    61 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 120
             P V+ID +   D T++++   ++ G L++ +  L +L L + K  ++++G      F +T
Sbjct:    25 PRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYISSDGGWFMDVFNVT 84

Query:   121 RLDTGRKVEDPDLLERIRLTI 141
               D G KV D  +LE IR ++
Sbjct:    85 DQD-GNKVTDEIVLEYIRKSL 104

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
 Identities = 25/81 (30%), Positives = 45/81 (55%)

Query:    61 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 120
             P V+ID DS   AT++++   +  G L++ +  L DL L + K  ++++G      F +T
Sbjct:    25 PRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYISSDGGWFMDVFNVT 84

Query:   121 RLDTGRKVEDPDLLERIRLTI 141
               D G KV D  +L+ I+ ++
Sbjct:    85 DQD-GNKVTDEVVLDYIQKSL 104

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
 Identities = 22/82 (26%), Positives = 45/82 (54%)

Query:    60 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 119
             MP V+ID     ++T+V++      G L++++  L D+ L + K  ++++G      F +
Sbjct:    19 MPRVVIDNGVCPNSTVVKIDSARSPGILLESVQLLTDMNLWIKKAYISSDGKWNMDVFHV 78

Query:   120 TRLDTGRKVEDPDLLERIRLTI 141
             + L+ G K+ D +L+  I  +I
Sbjct:    79 SDLN-GDKLTDENLIRYIEKSI 99

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query:    61 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 120
             P V+ID +++ DAT++Q+   ++ G L++ +  L D+ L + K  ++++G      F + 
Sbjct:    16 PRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYISSDGGWFMDVFKVI 75

Query:   121 RLDTGRKVEDPDLLERIRLTIINN 144
               D G K+ D  +L+ I+  I +N
Sbjct:    76 DQD-GNKIRDTQVLDYIQKRIESN 98

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
 Identities = 27/81 (33%), Positives = 44/81 (54%)

Query:    61 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 120
             P V+ID    S ATIV++    R G L++ +  L DL L + K  ++++G+     F +T
Sbjct:    20 PRVVIDNGVCSSATIVKVDSSRRNGILLEAVQILTDLNLSIKKAYISSDGTWNMDVFHVT 79

Query:   121 RLDTGRKVEDPDLLERIRLTI 141
              L+ G K+ D  +L  I  +I
Sbjct:    80 DLN-GNKLNDQSVLRYIEQSI 99

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
 Identities = 23/84 (27%), Positives = 46/84 (54%)

Query:    61 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 120
             P V +D DS+ + T++++   ++ G L+D +  L DL L ++K  ++++G      F +T
Sbjct:    24 PRVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADLDLVISKCYISSDGEWFMDVFHVT 83

Query:   121 RLDTGRKVEDPDLLERIRLTIINN 144
                 G K+ D  L+  I+  I ++
Sbjct:    84 D-QLGNKLTDRSLILYIQQAICSS 106

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
 Identities = 28/115 (24%), Positives = 54/115 (46%)

Query:    61 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 120
             P V ID  S  + T+V++   ++ G L++ +  L DL L + K  ++++G      F +T
Sbjct:    23 PSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYISSDGGWFMDVFHVT 82

Query:   121 RLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDI 175
                 G KV D   ++ I   ++    K H  +S+    G+  G+ +      ++I
Sbjct:    83 D-QQGNKVTDSKTIDYIE-KVLGP--KGHASASQNTWPGKRVGVHSLGDHTSIEI 133

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TIGR_CMR|SPO_0397 SPO_0397 "protein-P-II uridylyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
 Identities = 50/175 (28%), Positives = 79/175 (45%)

Query:    63 VLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDV--AKGTVNTEGSVKQTKFFIT 120
             + +D D + DAT    +  D  G       AL  +G +V  A+     +G V    F+I 
Sbjct:   707 IRLDPDEDRDATRACFAMADHPGIFSRMAGALALVGANVVDARSYTTKDGYVTDA-FWIQ 765

Query:   121 RLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIH 180
               + G   E   L  R+   I+  L K    + + L   +   IK  EK  +V   THI 
Sbjct:   766 DAE-GHPYEAARL-PRLSQMILKTL-KGEVVARDALKSRDK--IKKREKAFNVP--THIT 818

Query:   181 VKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 234
                +G    +++ ++T DRPGLL ++ + +A  NV + +A I T G    D F+V
Sbjct:   819 FDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYV 873

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008773 "[protein-PII

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.X.3434.1 hypothetical protein (217 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	7e-08
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	3e-07
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	1e-06
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	8e-06
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	1e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	2e-04
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	2e-04
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	4e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.001
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	0.001
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	0.003
pfam13291	77	pfam13291, ACT_4, ACT domain	0.003

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 11/200 (5%)

Query: 54  DADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSV 112
            A     P  LID    S  T V +   D+ G       AL  L L V    VNT +  V
Sbjct: 649 RALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGV 708

Query: 113 KQTKFFITRLDTGRKVEDPDLLERIRLT--IINNLLKYHPESSEQLAMGEAFGIKAPEKK 170
               F +  L       +    E ++    ++  L K     +          ++     
Sbjct: 709 ALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPD--TISARRARRRRLQHFAVP 766

Query: 171 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 230
             V I           K +++ +   DRPGLL  + + + ++ + ++SA+I T G  A+D
Sbjct: 767 PRVTILNTA-----SRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAED 821

Query: 231 KFHVS-YGGAALNSSLSQVL 249
            F+V+   G  L     Q L
Sbjct: 822 VFYVTDLFGLKLTDEEEQRL 841

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 17/47 (36%), Positives = 34/47 (72%)

Query: 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 235
           ++L +   DRPGLL ++ +++A++ +++ SA+I T G  A+D F+V+
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVT 47

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 117 FFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIA 176
           F+I     GR  ++P  L R+    I + L       E LA  +    K   +   V   
Sbjct: 777 FWIQDAF-GRDEDEPRRLARLA-KAIEDALSGEVRLPEALA--KRTKPKKRARAFHV--P 830

Query: 177 THIHVKEDGPKR-SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 235
             + +  +   R +++ +   DRPGLL ++ + ++D+N+++ SA I T G  A D F+V+
Sbjct: 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT 890

Length = 931

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQ 247
           +++ +   DRPGLL +I +++AD+ +++  A I T G  A D F+V+   G  L+     
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIA 60

Query: 248 VLVNCLR 254
            L   L 
Sbjct: 61  RLEEALE 67

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 186 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 234
             +++L +   DRPGLL  +  + AD+ + + SA+I T G   +D F V
Sbjct: 789 NDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837

Length = 867

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 61  PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 120
           P V ID ++++  T+++++  DR G L D   AL DL L++A   + T G      F++T
Sbjct: 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT 890

Query: 121 RLDTGRKVEDPDLLERIR 138
            L  G K+ +      IR
Sbjct: 891 DL-FGLKITNEARQAAIR 907

Length = 931

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 59  PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 111
             P VL    ++ DAT++++   DR G L     AL+  G+DV    V T G+
Sbjct: 693 APPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGA 745

Length = 774

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 183 EDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALN 242
           ++  +  +L +   DRPGLL  I +++A+  V V +A+I+T G   +D F +   G+ L+
Sbjct: 781 DERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID--GSGLS 838

Query: 243 SSLSQV 248
            +  Q+
Sbjct: 839 DNRLQI 844

Length = 856

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 235
           L + T DR GLL ++ ++  +  + V  AEI T+G +A + F+V+
Sbjct: 4   LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVT 48

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 185 GPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAA 240
            P  ++L +  ADRPGLL  + + +    VDV  A + T G    D F+V+     
Sbjct: 704 SPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGG 759

Length = 774

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT 223
           + +E  DRPGLL +I  +IA+  +++ S    T
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRT 33

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 9/148 (6%)

Query: 90  TMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKV-EDPDLLERIRLTIINNLLKY 148
           T+ A+  L L++    + T  S      +I   D G  + ++P  +E+IR  +   L   
Sbjct: 721 TVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALR-- 778

Query: 149 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMK 207
           +P+             + P +       T + +  D  +  ++L I   DRPGLL  I +
Sbjct: 779 NPDDYP-----TIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGR 833

Query: 208 IIADVNVDVESAEIDTEGLVAKDKFHVS 235
           I  + ++ +++A+I T G   +D F ++
Sbjct: 834 IFLEFDLSLQNAKIATLGERVEDVFFIT 861

Length = 895

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 225
           L IE  DRPGLL +I  +I++   ++ S   +++ 
Sbjct: 7   LEIEAIDRPGLLADITTVISNEKANILSVNAESKD 41

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
PRK05007	884	PII uridylyl-transferase; Provisional	100.0
PRK01759	854	glnD PII uridylyl-transferase; Provisional	100.0
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.97
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.97
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.96
PRK05092	931	PII uridylyl-transferase; Provisional	99.96
PRK04374	869	PII uridylyl-transferase; Provisional	99.96
PRK03381	774	PII uridylyl-transferase; Provisional	99.95
PRK03059	856	PII uridylyl-transferase; Provisional	99.95
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.84
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.82
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.81
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.81
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.68
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.61
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.61
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.61
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.61
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.6
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.6
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.57
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.54
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.4
PRK05007	884	PII uridylyl-transferase; Provisional	99.38
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.37
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.36
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.35
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.32
PRK04374	869	PII uridylyl-transferase; Provisional	99.32
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.32
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.3
PRK05092	931	PII uridylyl-transferase; Provisional	99.28
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.26
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.25
PRK03381	774	PII uridylyl-transferase; Provisional	99.24
PRK03059	856	PII uridylyl-transferase; Provisional	99.22
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.18
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.05
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	99.03
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	99.02
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	98.94
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.63
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.54
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.5
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.43
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.42
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.28
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.27
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.26
PRK00194	90	hypothetical protein; Validated	98.06
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.06
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.02
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.01
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.0
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.98
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.98
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.97
COG4747	142	ACT domain-containing protein [General function pr	97.91
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.9
PRK00194	90	hypothetical protein; Validated	97.87
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.81
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.73
PRK11589	190	gcvR glycine cleavage system transcriptional repre	97.62
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.58
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.58
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.51
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.46
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.42
COG3830	90	ACT domain-containing protein [Signal transduction	97.42
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.41
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.38
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.3
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.29
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.25
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	97.25
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.24
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.2
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.19
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.16
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.14
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.12
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	97.08
COG3830	90	ACT domain-containing protein [Signal transduction	97.06
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.06
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	97.05
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.03
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	97.01
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	97.0
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.0
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.98
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.95
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.94
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.93
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.92
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.91
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.86
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.85
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.85
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.84
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.83
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.8
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.78
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.76
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.71
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	96.66
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.64
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.62
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.6
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.58
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.57
PRK00227	693	glnD PII uridylyl-transferase; Provisional	96.57
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.57
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.57
PRK08577	136	hypothetical protein; Provisional	96.53
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	96.52
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.43
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.35
PRK08577	136	hypothetical protein; Provisional	96.34
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.32
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.32
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.31
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.24
cd02116	60	ACT ACT domains are commonly involved in specifica	96.23
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.22
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.21
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.19
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.1
PRK07334	403	threonine dehydratase; Provisional	96.04
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.03
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.01
PRK04435	147	hypothetical protein; Provisional	96.01
PRK07334	403	threonine dehydratase; Provisional	95.96
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.95
cd02116	60	ACT ACT domains are commonly involved in specifica	95.92
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	95.89
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	95.81
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	95.78
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.7
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	95.67
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.56
PRK04435	147	hypothetical protein; Provisional	95.38
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.36
PRK11899	279	prephenate dehydratase; Provisional	95.34
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.31
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.27
PRK06635	404	aspartate kinase; Reviewed	95.22
PRK06291	465	aspartate kinase; Provisional	95.16
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	95.06
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	95.05
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	95.01
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.96
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	94.93
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	94.89
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	94.72
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	94.68
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	94.59
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.47
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	94.45
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	94.42
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	94.37
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	94.35
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	93.81
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	93.59
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	93.37
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	93.29
COG1707	218	ACT domain-containing protein [General function pr	93.22
PRK08210	403	aspartate kinase I; Reviewed	93.18
PLN02551	521	aspartokinase	93.03
PRK09181	475	aspartate kinase; Validated	92.91
COG4747	142	ACT domain-containing protein [General function pr	92.83
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.76
PRK08818	370	prephenate dehydrogenase; Provisional	92.76
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	92.6
PRK06382	406	threonine dehydratase; Provisional	92.37
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	92.15
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	91.98
COG1707	218	ACT domain-containing protein [General function pr	91.74
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	91.49
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	91.24
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	91.23
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	91.2
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	90.96
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	90.78
PRK09034	454	aspartate kinase; Reviewed	90.66
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	90.26
PRK06545	359	prephenate dehydrogenase; Validated	90.26
PRK07431	587	aspartate kinase; Provisional	90.24
PRK11898	283	prephenate dehydratase; Provisional	89.76
PRK08198	404	threonine dehydratase; Provisional	89.63
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	89.49
PLN02317	382	arogenate dehydratase	89.34
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	89.08
PRK06382	406	threonine dehydratase; Provisional	88.91
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	88.74
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	88.6
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	88.47
PRK06349	426	homoserine dehydrogenase; Provisional	88.27
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	88.22
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	88.1
PRK14646	155	hypothetical protein; Provisional	87.35
PRK06545	359	prephenate dehydrogenase; Validated	86.71
PRK07431	587	aspartate kinase; Provisional	86.4
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	86.21
PRK11899	279	prephenate dehydratase; Provisional	86.13
PRK09224	504	threonine dehydratase; Reviewed	86.03
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	86.03
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	85.72
PRK14634	155	hypothetical protein; Provisional	84.0
PRK14636	176	hypothetical protein; Provisional	83.77
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	83.65
PRK14640	152	hypothetical protein; Provisional	83.61
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	83.38
PRK08198	404	threonine dehydratase; Provisional	82.78
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	82.77
PLN02550	591	threonine dehydratase	82.13
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	81.99
PRK14647	159	hypothetical protein; Provisional	81.94
PRK09084	448	aspartate kinase III; Validated	81.67
PRK14645	154	hypothetical protein; Provisional	81.49
PRK00092	154	ribosome maturation protein RimP; Reviewed	81.34
PRK14639	140	hypothetical protein; Provisional	81.08
PRK14638	150	hypothetical protein; Provisional	80.66
PRK08818	370	prephenate dehydrogenase; Provisional	80.58
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	80.15
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	80.14

>PRK05007 PII uridylyl-transferase; Provisional

Probab=100.00  E-value=1.9e-32  Score=282.72  Aligned_cols=191  Identities=24%  Similarity=0.286  Sum_probs=168.6

Q ss_pred             CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHH
Q 024465           59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI  137 (267)
Q Consensus        59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl  137 (267)
                      .+|.|.++++.+.++++|+|+++||||||++||++|+.+|+||++|+|+|.++|. +|+|+|++. +|.++ +++++++|
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g~~~-~~~~~~~I  764 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DGSPL-SQDRHQVI  764 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CCCCC-CHHHHHHH
Confidence            5788999999999999999999999999999999999999999999999999855 699999997 88888 46789999


Q ss_pred             HHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCC-eEEEEEEeCCcccHHHHHHHHHHhCCccE
Q 024465          138 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDV  216 (267)
Q Consensus       138 ~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~-~t~l~i~~~DRpGLL~~Itr~l~~~gl~I  216 (267)
                      +++|.++|.+.... .. .    .+  +.+++.+.+..+++|.|+++.+. +|+|+|.|.||||||++|+++|.++|++|
T Consensus       765 ~~~L~~aL~~~~~~-~~-~----~~--~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I  836 (884)
T PRK05007        765 RKALEQALTQSSPQ-PP-K----PR--RLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISL  836 (884)
T ss_pred             HHHHHHHHcCCCCC-cc-c----cc--ccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEE
Confidence            99999999763211 11 1    11  12345667889999999998865 99999999999999999999999999999


Q ss_pred             EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 024465          217 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR  259 (267)
Q Consensus       217 ~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~~  259 (267)
                      ++|+|+|.|++|+|+|||++ +|.|++++.++.|+++|..+|+.
T Consensus       837 ~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        837 HGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALNP  880 (884)
T ss_pred             EEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999 99999977889999999999965

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=100.00  E-value=6.4e-32  Score=278.03  Aligned_cols=189  Identities=18%  Similarity=0.230  Sum_probs=165.1

Q ss_pred             CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eeEEEEEEEeCCCCCCCCChHHHHHH
Q 024465           59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERI  137 (267)
Q Consensus        59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-~~~d~F~I~~~~~g~~l~~~~~~erl  137 (267)
                      .+|.|.++++.+.++++|+|+++||||||++|+++|+.+|+||++|+|+|+.+ .++|+|+|++. +|.++. ++++++|
T Consensus       663 ~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~-~~~~~~l  740 (854)
T PRK01759        663 GDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLE-FDRRRQL  740 (854)
T ss_pred             CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCC-HHHHHHH
Confidence            46889999999999999999999999999999999999999999999999655 55799999997 898884 6789999


Q ss_pred             HHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCC-eEEEEEEeCCcccHHHHHHHHHHhCCccE
Q 024465          138 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDV  216 (267)
Q Consensus       138 ~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~-~t~l~i~~~DRpGLL~~Itr~l~~~gl~I  216 (267)
                      ++.|.++|.+... ...       .. +.+++.+.+..+++|.|+++.+. +|+|+|.+.||||||++|+++|.++|++|
T Consensus       741 ~~~L~~aL~~~~~-~~~-------~~-~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i  811 (854)
T PRK01759        741 EQALTKALNTNKL-KKL-------NL-EENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNL  811 (854)
T ss_pred             HHHHHHHHcCCCC-cch-------hc-cccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEE
Confidence            9999999976321 010       01 12235567888999999998875 99999999999999999999999999999


Q ss_pred             EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcC
Q 024465          217 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLR  258 (267)
Q Consensus       217 ~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~  258 (267)
                      +.|+|+|.|++|+|+|||++ +|+|++++.++.|+++|.++|.
T Consensus       812 ~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l~  854 (854)
T PRK01759        812 LNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNLS  854 (854)
T ss_pred             EEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHhC
Confidence            99999999999999999999 9999998866999999998874

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.97  E-value=1.4e-29  Score=261.79  Aligned_cols=200  Identities=21%  Similarity=0.310  Sum_probs=169.0

Q ss_pred             CCCCEEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCC-ChH
Q 024465           58 IPMPHVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVE-DPD  132 (267)
Q Consensus        58 ~~~p~V~i~~~~~---~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~-~~~  132 (267)
                      ...|.|.+....+   .++++|+|+|+||||||++||++|+.+|+||++|+|+|+++|+ +|+|+|++. +|.++. +++
T Consensus       686 ~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~  764 (895)
T PRK00275        686 DGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPA  764 (895)
T ss_pred             CCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHH
Confidence            3457788877665   5999999999999999999999999999999999999998876 699999997 888753 457


Q ss_pred             HHHHHHHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCC-CeEEEEEEeCCcccHHHHHHHHHHh
Q 024465          133 LLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIAD  211 (267)
Q Consensus       133 ~~erl~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s-~~t~l~i~~~DRpGLL~~Itr~l~~  211 (267)
                      ++++|++.|.++|.+.. .....+++      +.+++...++.++.|.+.++.+ .+|.|+|++.||||||++|+++|++
T Consensus       765 r~~~i~~~L~~~L~~~~-~~~~~~~~------~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~  837 (895)
T PRK00275        765 RIEQIREGLTEALRNPD-DYPTIIQR------RVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLE  837 (895)
T ss_pred             HHHHHHHHHHHHHcCCC-ccchhhhh------hhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHH
Confidence            89999999999997632 21223321      1234556678888998888775 4999999999999999999999999


Q ss_pred             CCccEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCCccC
Q 024465          212 VNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPETDID  265 (267)
Q Consensus       212 ~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~-~~~~L~~~L~~~l~~~~~~~~  265 (267)
                      +|++|..|+|.|.|+++.|+|||++ +|.|++++ .++.|+++|..+|..++....
T Consensus       838 ~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~~~~  893 (895)
T PRK00275        838 FDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNEKDT  893 (895)
T ss_pred             CCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhccccccC
Confidence            9999999999999999999999999 99999886 789999999999977765443

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.97  E-value=2.5e-29  Score=259.26  Aligned_cols=194  Identities=21%  Similarity=0.291  Sum_probs=166.5

Q ss_pred             CCCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-eEEEEEEEeCCCCCCCCChHHHHH
Q 024465           58 IPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLER  136 (267)
Q Consensus        58 ~~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~-~~d~F~I~~~~~g~~l~~~~~~er  136 (267)
                      .+.|.|.+.+....++++|+|+++||||||++|+++|+.+|+||++|+|+|+.++ ++|+|+|++. +|.++.+++++++
T Consensus       653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-~g~~~~~~~~~~~  731 (850)
T TIGR01693       653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-FGSPPAAERVFQE  731 (850)
T ss_pred             CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-CCCCCCcHHHHHH
Confidence            4568899988777899999999999999999999999999999999999966554 5799999997 8888877778999


Q ss_pred             HHHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCC-eEEEEEEeCCcccHHHHHHHHHHhCCcc
Q 024465          137 IRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVD  215 (267)
Q Consensus       137 l~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~-~t~l~i~~~DRpGLL~~Itr~l~~~gl~  215 (267)
                      |++.|.++|.+.. .....+    ..+.+.+++...+.++++|.|++..+. +|+|+|.|.||||||++|+++|+++|++
T Consensus       732 i~~~L~~~L~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~  806 (850)
T TIGR01693       732 LLQGLVDVLAGLA-KDPDTI----SARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLS  806 (850)
T ss_pred             HHHHHHHHHcCCC-cccccc----ccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCe
Confidence            9999999997632 101111    111112345667889999999998875 9999999999999999999999999999


Q ss_pred             EEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 024465          216 VESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  257 (267)
Q Consensus       216 I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l  257 (267)
                      |++|+|+|.|+++.|+|||++ .|.|++++.++.|+++|..+|
T Consensus       807 i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l  849 (850)
T TIGR01693       807 IQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV  849 (850)
T ss_pred             EEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999998 999999888899999999876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.9e-28  Score=243.79  Aligned_cols=194  Identities=27%  Similarity=0.316  Sum_probs=171.3

Q ss_pred             CCCCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHH
Q 024465           57 YIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLE  135 (267)
Q Consensus        57 ~~~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~e  135 (267)
                      +..+|.|.+......+.++|+|+++|+|.||+.+|.++...|+||++|+|+|+.+|+ .|+|+|.++ +|.++. +++..
T Consensus       668 ~~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~-~dr~~  745 (867)
T COG2844         668 DLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE-EDRRA  745 (867)
T ss_pred             hccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc-hhHHH
Confidence            356799998877777999999999999999999999999999999999999999985 799999997 898886 67888


Q ss_pred             HHHHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCC-eEEEEEEeCCcccHHHHHHHHHHhCCc
Q 024465          136 RIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNV  214 (267)
Q Consensus       136 rl~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~-~t~l~i~~~DRpGLL~~Itr~l~~~gl  214 (267)
                      .++..|.+++..+...  +      +.+.+.+++..+|+++|+|.|.+..++ .++||+.+.||||||++|+++|++.|+
T Consensus       746 ~~~~~l~~~l~s~~~~--~------~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l  817 (867)
T COG2844         746 ALRGELIEALLSGKAQ--P------PRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGL  817 (867)
T ss_pred             HHHHHHHHHHhcCCCC--C------ccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhccc
Confidence            8888888878664332  1      123356677889999999999998876 999999999999999999999999999


Q ss_pred             cEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 024465          215 DVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP  260 (267)
Q Consensus       215 ~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~~~  260 (267)
                      +|.+|+|+|.|++|+|+|||++ .|.+++++.++.+.+.|...+...
T Consensus       818 ~i~~AkItT~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~~  864 (867)
T COG2844         818 SLHSAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPN  864 (867)
T ss_pred             ceeeeeeccccccceeEEEEeccccccCCHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999 999998888899999998887643

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=6e-28  Score=250.91  Aligned_cols=199  Identities=21%  Similarity=0.299  Sum_probs=169.7

Q ss_pred             CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHH
Q 024465           59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI  137 (267)
Q Consensus        59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl  137 (267)
                      .++.|.+.+..+.++++|+|+++||||||++|+++|+.+|+||++|+|+|+.+++ +|+|+|++. +|.+..+++++++|
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l  796 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARL  796 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHH
Confidence            5688889998889999999999999999999999999999999999999987766 699999986 88877778899999


Q ss_pred             HHHHHHHhhccCCCchhHhhhccccCccCC-CcccccccceeEEeccCCCC-eEEEEEEeCCcccHHHHHHHHHHhCCcc
Q 024465          138 RLTIINNLLKYHPESSEQLAMGEAFGIKAP-EKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVD  215 (267)
Q Consensus       138 ~~~L~~~L~~~~~~~~~~la~~~~~~~~~~-~r~~~~~~~~~V~i~~~~s~-~t~l~i~~~DRpGLL~~Itr~l~~~gl~  215 (267)
                      ++.|..++.+. ......+.    .+ ..+ .+...+..++.|.|+++.+. ++.|+|.+.||||||++|+++|+++|++
T Consensus       797 ~~~L~~~l~~~-~~~~~~~~----~r-~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~  870 (931)
T PRK05092        797 AKAIEDALSGE-VRLPEALA----KR-TKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLN  870 (931)
T ss_pred             HHHHHHHHcCC-CCCccccc----cc-cCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCce
Confidence            99999988652 22111111    11 112 13467788899999888765 8999999999999999999999999999


Q ss_pred             EEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCCcc
Q 024465          216 VESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPETDI  264 (267)
Q Consensus       216 I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~-~~~~L~~~L~~~l~~~~~~~  264 (267)
                      |.+|+|.|.|+++.|+|||++ +|.++.++ .++.|+++|..+|..+..++
T Consensus       871 I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~  921 (931)
T PRK05092        871 IASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAEA  921 (931)
T ss_pred             EEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCccccc
Confidence            999999999999999999999 99999887 78899999999997666554

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=8.7e-28  Score=247.35  Aligned_cols=189  Identities=20%  Similarity=0.213  Sum_probs=160.5

Q ss_pred             CCCEEEEee-cCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHH
Q 024465           59 PMPHVLIDQ-DSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLER  136 (267)
Q Consensus        59 ~~p~V~i~~-~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~er  136 (267)
                      ..|.|.+.. ....++++|+|+++||||||++||++|+.+|+||++|+|+|+.+|. +|+|+|.++ +|..   ++++++
T Consensus       675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~  750 (869)
T PRK04374        675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQR  750 (869)
T ss_pred             CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHH
Confidence            356666654 7778999999999999999999999999999999999999988776 699999986 6654   367888


Q ss_pred             HHHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCC-CeEEEEEEeCCcccHHHHHHHHHHhCCcc
Q 024465          137 IRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVD  215 (267)
Q Consensus       137 l~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s-~~t~l~i~~~DRpGLL~~Itr~l~~~gl~  215 (267)
                      |++.|.++|.+. ..... +.    ++ +.+++...++++++|.++++.+ .+|.|+|.+.||||||++|+++|+++|++
T Consensus       751 i~~~l~~~l~~~-~~~~~-~~----~~-~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~  823 (869)
T PRK04374        751 LAAALRQVLAGD-LQKVR-PA----RR-AVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLR  823 (869)
T ss_pred             HHHHHHHHHcCC-CCccc-cc----cc-cCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCe
Confidence            999999999763 22111 21    11 2245667888999999988775 58999999999999999999999999999


Q ss_pred             EEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcC
Q 024465          216 VESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLR  258 (267)
Q Consensus       216 I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~  258 (267)
                      |..|+|+|.|+++.|+|||++ +|.+++++.++.|+++|+++|+
T Consensus       824 I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~  867 (869)
T PRK04374        824 VHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLD  867 (869)
T ss_pred             EEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence            999999999999999999999 8999988866999999999985

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=8.3e-27  Score=238.13  Aligned_cols=186  Identities=21%  Similarity=0.207  Sum_probs=154.7

Q ss_pred             CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465           59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR  138 (267)
Q Consensus        59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~  138 (267)
                      ++|.|.+.... .++++|+|+|+||||||++||++|+.+|+||++|+|+|..+.++|+|+|.+. +|.+.    .+++++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~  659 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLR  659 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHH
Confidence            56899998888 8999999999999999999999999999999999999955666899999986 77643    368899


Q ss_pred             HHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCC-eEEEEEEeCCcccHHHHHHHHHHhCCccEE
Q 024465          139 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVE  217 (267)
Q Consensus       139 ~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~-~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~  217 (267)
                      +.|+++|.+. ......++..  .+...+++...+..++.|.+++..+. +++|+|.+.||||||++|+++|+++|+||.
T Consensus       660 ~~L~~~L~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~  736 (774)
T PRK03381        660 QDLRRALDGD-LDVLARLAAR--EAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVR  736 (774)
T ss_pred             HHHHHHHcCC-Cchhhhhhcc--cccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEE
Confidence            9999988762 2211222210  00001244567788888888877654 899999999999999999999999999999


Q ss_pred             EEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHH
Q 024465          218 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLR  254 (267)
Q Consensus       218 ~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~  254 (267)
                      +|+|.|.|+++.|+|||++ +|.+++++ ++.|+++|+
T Consensus       737 ~AkI~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~  773 (774)
T PRK03381        737 WARVATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL  773 (774)
T ss_pred             EEEEeecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence            9999999999999999999 99999988 889998886

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=1.3e-26  Score=238.81  Aligned_cols=190  Identities=19%  Similarity=0.249  Sum_probs=158.8

Q ss_pred             CCCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHH
Q 024465           58 IPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLER  136 (267)
Q Consensus        58 ~~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~er  136 (267)
                      .+.|.|.+......++++|+|+++||||||++||++|+.+|+||++|+|+|+.+|. +|+|+|.++ +|. ..+++++++
T Consensus       663 ~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~  740 (856)
T PRK03059        663 TDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINL  740 (856)
T ss_pred             CCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHH
Confidence            34678888888889999999999999999999999999999999999999988877 699999986 666 455789999


Q ss_pred             HHHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCC-CeEEEEEEeCCcccHHHHHHHHHHhCCcc
Q 024465          137 IRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVD  215 (267)
Q Consensus       137 l~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s-~~t~l~i~~~DRpGLL~~Itr~l~~~gl~  215 (267)
                      |++.|.++|.+.. .....+     .+ +.+++.+.|..++.|.+.+..+ ++|.|+|.+.||||||++|+++|+++|++
T Consensus       741 i~~~l~~~l~~~~-~~~~~~-----~~-~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~  813 (856)
T PRK03059        741 VEHELAERLAEQA-PLPEPS-----KG-RLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVS  813 (856)
T ss_pred             HHHHHHHHHcCCC-Ccchhh-----cc-cccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCe
Confidence            9999999997632 111111     11 2245566788888888877664 59999999999999999999999999999


Q ss_pred             EEEEEEEecCCeeeeEEEEEeCCCCCChH-HHHHHHHHHHHHcC
Q 024465          216 VESAEIDTEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRYYLR  258 (267)
Q Consensus       216 I~~a~i~T~g~~a~d~F~v~d~G~~l~~~-~~~~L~~~L~~~l~  258 (267)
                      |..|+|.|.|+++.|+|||++  .++.++ .++.|+++|..+|+
T Consensus       814 I~~AkI~T~~~~v~DvF~V~~--~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        814 VHTAKINTLGERVEDTFLIDG--SGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             EEEEEEeecCCEEEEEEEEcC--CCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999943  445454 78999999998875

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.84  E-value=1.7e-20  Score=138.82  Aligned_cols=72  Identities=28%  Similarity=0.472  Sum_probs=69.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCC
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRR  259 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~-~~~~L~~~L~~~l~~  259 (267)
                      +|+|+|.|.||||||++|+++|.++|++|.+|+|+|+|++|.|+|||++ +|.|++++ .++.|+++|.++|.+
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999999999999999999 99999988 789999999999875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.82  E-value=9.5e-20  Score=133.85  Aligned_cols=68  Identities=26%  Similarity=0.461  Sum_probs=64.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHH
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRY  255 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~-~~~~L~~~L~~  255 (267)
                      +|+|+|.+.||||||++|+++|+++|++|++|+|+|.|++++|+|||++ +|+|+.++ .++.|+++|..
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            4799999999999999999999999999999999999999999999999 99999876 78899988753

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.81  E-value=2.8e-19  Score=132.33  Aligned_cols=73  Identities=21%  Similarity=0.347  Sum_probs=70.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      ||+|+|.|+||||||++|+++|+++|++|++|+|.|.|+.+.|+|||++. +|.++.+++++++|+++|.++|+
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~-~g~kl~~~~~~~~l~~~L~~al~   73 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK-DGRTLSTEGERQRVIKCLEAAIE   73 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC-CCCccCCHHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999999999999999999999999998 99999999999999999998875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.81  E-value=2e-19  Score=133.12  Aligned_cols=71  Identities=27%  Similarity=0.406  Sum_probs=67.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE--ecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCC
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID--TEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRP  260 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~--T~g~~a~d~F~v~d-~G~~l~~~-~~~~L~~~L~~~l~~~  260 (267)
                      |+|+|.|.||||||++|+++|+++|++|++|+|+  |.|++++|+||| + +|+|++++ .++.|+++|.++|..|
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~~   75 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVCP   75 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence            5799999999999999999999999999999999  999999999999 6 89999887 7899999999999887

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.68  E-value=3.6e-16  Score=114.91  Aligned_cols=69  Identities=25%  Similarity=0.424  Sum_probs=64.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII  142 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~  142 (267)
                      +|+|.|.++||||||++|+.+|.++|++|+.|+|.|.|+.+.|+|||++. +|.++.++++++.|++.|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~-~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ-LGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999999999999999997 9999988888888888853

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.61  E-value=5.2e-15  Score=109.54  Aligned_cols=71  Identities=21%  Similarity=0.409  Sum_probs=66.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE--EcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~--T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      |++.|.|+||||||++|+.+|.++|++|..|+|.  |.|+.+.|.||| +. +|.++.++++++.|++.|.++|+
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~-~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS-DGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC-CCCccCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999  999999999999 54 78889888999999999988775

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.61  E-value=6.6e-15  Score=108.07  Aligned_cols=72  Identities=25%  Similarity=0.340  Sum_probs=63.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-eEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  145 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~-~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L  145 (267)
                      +++|.|+++||||||++++++|+.+|+||.+|+|+|.+++ +.|+|+|++. +|.++.++++++++++.|.++|
T Consensus         1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhhC
Confidence            4689999999999999999999999999999999999654 5799999986 8888777889999999987643

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.61  E-value=8.1e-15  Score=108.09  Aligned_cols=72  Identities=25%  Similarity=0.300  Sum_probs=66.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCC-CCCCCChHHHHHHHHHHHHHhh
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDT-GRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~-g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      |+|+|+++||||||++|+++|+++|+||++|+|+|.++.+.|+|+|++. + |.++.+++++++|++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999998888999999986 6 7778788899999999988764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.61  E-value=1.4e-14  Score=125.41  Aligned_cols=138  Identities=12%  Similarity=0.155  Sum_probs=102.4

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCC
Q 024465           71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP  150 (267)
Q Consensus        71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~  150 (267)
                      ..+.+|++.|+||||+++.++++|+++||||.+.+....++.+.-++.|.    +.+    ..+++|+..|...-..  .
T Consensus         6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs----~~~----~~~~~le~~L~~l~~~--~   75 (190)
T PRK11589          6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS----GSW----NAITLIESTLPLKGAE--L   75 (190)
T ss_pred             ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe----CCh----hHHHHHHHHHHhhhhh--c
Confidence            47789999999999999999999999999999999999999888777773    332    4667777776652211  1


Q ss_pred             CchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCC--ee
Q 024465          151 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--VA  228 (267)
Q Consensus       151 ~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~--~a  228 (267)
                      ++...+     +  +...+           .....+..+.+++.+.|||||+++||++|+++|+||.+.+..|++.  ..
T Consensus        76 ~L~i~v-----~--~~~~~-----------~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~  137 (190)
T PRK11589         76 DLLIVM-----K--RTTAR-----------PRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGER  137 (190)
T ss_pred             CeEEEE-----E--ecccc-----------ccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCC
Confidence            111000     0  00000           0011122589999999999999999999999999999999999985  56


Q ss_pred             eeEEEEEe
Q 024465          229 KDKFHVSY  236 (267)
Q Consensus       229 ~d~F~v~d  236 (267)
                      .+.|.+.-
T Consensus       138 ~~lf~~~~  145 (190)
T PRK11589        138 PAQLHIQI  145 (190)
T ss_pred             cccEEEEE
Confidence            77777763

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.60  E-value=7.8e-15  Score=108.19  Aligned_cols=70  Identities=26%  Similarity=0.321  Sum_probs=65.4

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-C-CCCCChH-HHHHHHHHHHHHcC
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-G-GAALNSS-LSQVLVNCLRYYLR  258 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~-G~~l~~~-~~~~L~~~L~~~l~  258 (267)
                      |+|+|.+.||||||++|+++|+++|+||..|++.|.|+.+.|+|+|++ + |.++.++ .++.|++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            579999999999999999999999999999999999999999999998 6 8888776 78999999998875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.60  E-value=1.1e-14  Score=108.17  Aligned_cols=72  Identities=19%  Similarity=0.272  Sum_probs=64.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEe-cCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCC
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPE  261 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T-~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~~~~  261 (267)
                      .++|.+.||||||++|+++|+++|++|.+|+|.| .++++.|+|||++ .|...+++.++.|+++|.++|++.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~~~   75 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGDSM   75 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHchhc
Confidence            6899999999999999999999999999999986 8999999999998 6663344488999999999998754

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.57  E-value=2.7e-14  Score=104.80  Aligned_cols=69  Identities=26%  Similarity=0.334  Sum_probs=62.9

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec-CCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHc
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYL  257 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~-g~~a~d~F~v~d-~G~~l~~~-~~~~L~~~L~~~l  257 (267)
                      +.|+|++.||||||++|+++|+.+|+||..|+|.|. ++++.|+|||++ .|.++.++ .++.|++.|..+|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            578999999999999999999999999999999888 599999999998 89988655 7889999998765

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.54  E-value=9.9e-14  Score=102.93  Aligned_cols=70  Identities=24%  Similarity=0.227  Sum_probs=61.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc-CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE-GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~-~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      ++.|+|+||||||++++++|+++|+||.+|+|+|+ ++.+.|+|+|++. +|. ..++++++++++.|.++|.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~   72 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLG   72 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHc
Confidence            68999999999999999999999999999999985 5556799999986 666 4567899999999988774

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.40  E-value=2.4e-12  Score=133.96  Aligned_cols=88  Identities=24%  Similarity=0.345  Sum_probs=82.4

Q ss_pred             CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465           59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR  138 (267)
Q Consensus        59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~  138 (267)
                      .+|.|.+.+..+.++|+|+|+++||||||++|+++|..+|+||++|+|+|.++.+.|+|||++. +|.++.+++++++|+
T Consensus       800 ~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~  878 (895)
T PRK00275        800 FPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQ  878 (895)
T ss_pred             CCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999998888999999997 899988888999999


Q ss_pred             HHHHHHhhc
Q 024465          139 LTIINNLLK  147 (267)
Q Consensus       139 ~~L~~~L~~  147 (267)
                      +.|.++|.+
T Consensus       879 ~~L~~~L~~  887 (895)
T PRK00275        879 DAICEQLDA  887 (895)
T ss_pred             HHHHHHHhc
Confidence            999998864

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.38  E-value=2.8e-12  Score=133.36  Aligned_cols=86  Identities=17%  Similarity=0.239  Sum_probs=80.4

Q ss_pred             CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465           59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR  138 (267)
Q Consensus        59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~  138 (267)
                      -+|.|.|+++.++.+|+|.|.++||||||++|+++|.++|++|..|+|.|.|+.+.|+|||++. +|.+++ +++++.|+
T Consensus       794 ~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~-~g~~l~-~~~~~~l~  871 (884)
T PRK05007        794 VPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATA-DRRALN-EELQQELR  871 (884)
T ss_pred             CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcC-CCCcCC-HHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999999999999999997 899887 67889999


Q ss_pred             HHHHHHhh
Q 024465          139 LTIINNLL  146 (267)
Q Consensus       139 ~~L~~~L~  146 (267)
                      +.|.++|.
T Consensus       872 ~~L~~~l~  879 (884)
T PRK05007        872 QRLTEALN  879 (884)
T ss_pred             HHHHHHHh
Confidence            99888774

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.37  E-value=2.6e-12  Score=133.18  Aligned_cols=85  Identities=19%  Similarity=0.339  Sum_probs=78.4

Q ss_pred             CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465           59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR  138 (267)
Q Consensus        59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~  138 (267)
                      -+|.|.|+++.++++|+|.|.++||||||++|+++|.++|++|+.|+|+|.|+.+.|+|||++. +|.+++++++ +.|+
T Consensus       769 ~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~-~g~~l~~~~~-~~l~  846 (854)
T PRK01759        769 VKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQ-QGQALDEEER-KALK  846 (854)
T ss_pred             CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECC-CCCcCChHHH-HHHH
Confidence            4689999999999999999999999999999999999999999999999999999999999997 8999876544 8888


Q ss_pred             HHHHHHh
Q 024465          139 LTIINNL  145 (267)
Q Consensus       139 ~~L~~~L  145 (267)
                      +.|.++|
T Consensus       847 ~~L~~~l  853 (854)
T PRK01759        847 SRLLSNL  853 (854)
T ss_pred             HHHHHHh
Confidence            8887765

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.36  E-value=3.4e-12  Score=107.28  Aligned_cols=156  Identities=17%  Similarity=0.211  Sum_probs=110.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCC
Q 024465           71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP  150 (267)
Q Consensus        71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~  150 (267)
                      ..|.+|++++.||||+...+++...+.||||.++++...|+.+.-+..|    .|.|    +...+|+..|.. +.+ +.
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li----sgs~----dav~~le~~l~~-l~~-~~   72 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI----SGSW----DAVTLLEATLPL-LGA-EL   72 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE----eeCH----HHHHHHHHHhhc-ccc-cC
Confidence            4689999999999999999999999999999999999999998744444    4654    567778887654 222 11


Q ss_pred             CchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC--Cee
Q 024465          151 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVA  228 (267)
Q Consensus       151 ~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g--~~a  228 (267)
                      +....+           .+     ..++  ........+.++|.+.||||++.++|+.|.++|++|++....|+.  +..
T Consensus        73 ~L~v~m-----------~r-----t~~~--~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~  134 (176)
T COG2716          73 DLLVVM-----------KR-----TGAH--PTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSS  134 (176)
T ss_pred             CeEEEE-----------ee-----cCCC--ccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCC
Confidence            111000           00     0000  011223478999999999999999999999999999999998875  446


Q ss_pred             eeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 024465          229 KDKFHVSY-GGAALNSSLSQVLVNCLRY  255 (267)
Q Consensus       229 ~d~F~v~d-~G~~l~~~~~~~L~~~L~~  255 (267)
                      ...|++.- -+-|.+-. ...|++++.+
T Consensus       135 ~~lfha~it~~lPa~~~-i~~l~~~f~a  161 (176)
T COG2716         135 APLFHAQITARLPANLS-ISALRDAFEA  161 (176)
T ss_pred             ccceehhhhccCCCcCc-HHHHHHHHHH
Confidence            67888864 55565543 2344444433

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.35  E-value=6.9e-12  Score=91.14  Aligned_cols=52  Identities=21%  Similarity=0.263  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCC
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGR  126 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~  126 (267)
                      .+|.|+++||||||++++++|+.+|+||++|+|+|+.+++ +|+|+|.+. +|.
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~-~~~   54 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW-KRG   54 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC-Ccc
Confidence            5899999999999999999999999999999999998877 699999986 664

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.32  E-value=1.9e-11  Score=88.00  Aligned_cols=69  Identities=32%  Similarity=0.528  Sum_probs=62.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  257 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l  257 (267)
                      |.|.|.+.||||+|++|+++|+++|++|.++++.|.++.+.++|++++ .|.+++.+..+.|+++|..+|
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence            578999999999999999999999999999999999889999999998 888866668889999988764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.32  E-value=1.3e-11  Score=128.01  Aligned_cols=86  Identities=23%  Similarity=0.267  Sum_probs=77.9

Q ss_pred             CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465           59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR  138 (267)
Q Consensus        59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~  138 (267)
                      -+|.|.+.+..+.++|+|+|.++||||||++|+++|+++|+||+.|+|+|.++.+.|+|||++. +|.++.++++ +.|+
T Consensus       782 ~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~~~-~~l~  859 (869)
T PRK04374        782 FAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE-HDRPLSESAR-QALR  859 (869)
T ss_pred             CCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcCChHHH-HHHH
Confidence            3689999999999999999999999999999999999999999999999998888999999997 8888766554 8899


Q ss_pred             HHHHHHhh
Q 024465          139 LTIINNLL  146 (267)
Q Consensus       139 ~~L~~~L~  146 (267)
                      +.|.++|.
T Consensus       860 ~~L~~~l~  867 (869)
T PRK04374        860 DALCACLD  867 (869)
T ss_pred             HHHHHHhc
Confidence            99887763

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.32  E-value=1.9e-11  Score=89.48  Aligned_cols=66  Identities=30%  Similarity=0.581  Sum_probs=58.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTI  141 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L  141 (267)
                      +.|+|.++||||+|++|+++|+++|+||.+|.+++.++...++|+|.+. +|.++ ++++++++++.|
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~-~~~~~~~l~~~l   67 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVRQEI   67 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcC-CHHHHHHHHHHh
Confidence            6899999999999999999999999999999999987777899999986 77776 667888777774

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.30  E-value=2.4e-11  Score=89.00  Aligned_cols=66  Identities=26%  Similarity=0.399  Sum_probs=57.9

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHH
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCL  253 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L  253 (267)
                      ++.+.|.++||||+|++|+++|+++|+||.+|.+.|.++.+.++|+|.+ +|.+++.+.++.|+++|
T Consensus         1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l   67 (72)
T cd04926           1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEI   67 (72)
T ss_pred             CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHh
Confidence            4678999999999999999999999999999999999889999999998 88888444666666655

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.28  E-value=3.2e-11  Score=126.28  Aligned_cols=88  Identities=30%  Similarity=0.450  Sum_probs=82.8

Q ss_pred             CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465           59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR  138 (267)
Q Consensus        59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~  138 (267)
                      .+|.|.|++..+.++++|.|.++||||||++|+++|.++|+||.+|+|.|.++.+.|+|+|++. +|.++.+++++++|+
T Consensus       829 ~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~  907 (931)
T PRK05092        829 VPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL-FGLKITNEARQAAIR  907 (931)
T ss_pred             CCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC-CCCcCCCHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999998888999999997 899998888899999


Q ss_pred             HHHHHHhhc
Q 024465          139 LTIINNLLK  147 (267)
Q Consensus       139 ~~L~~~L~~  147 (267)
                      +.|.++|.+
T Consensus       908 ~~L~~~L~~  916 (931)
T PRK05092        908 RALLAALAE  916 (931)
T ss_pred             HHHHHHhcC
Confidence            999998865

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.26  E-value=6.7e-11  Score=85.08  Aligned_cols=69  Identities=29%  Similarity=0.494  Sum_probs=61.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  144 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~  144 (267)
                      |.|.|.++||||+|++++++|.++|++|.++++.+.++...+.|++... +|.+ .+.+++++|+++|.++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~-~~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQP-LDPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhh
Confidence            5789999999999999999999999999999999998877899999986 7777 4567899999997654

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.25  E-value=1.2e-10  Score=118.04  Aligned_cols=143  Identities=13%  Similarity=0.149  Sum_probs=109.0

Q ss_pred             EEEEEEe-CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCCCc
Q 024465           74 TIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES  152 (267)
Q Consensus        74 t~V~V~~-~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~~~  152 (267)
                      -.|+|.. +|++|+|.+++++|+.++++|++|++.+ ++.+..+|.|+.. .|.+.+ +   .++++.+..++.+.-+. 
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~-~~~~~~-~---~~~~~~~~~~~~~~~~~-  619 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRAN-GPQDFD-P---QEFLQAYKSGVYSELPD-  619 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecC-CCCCCC-h---HHHHHHHHHhhcCCCCc-
Confidence            4677777 9999999999999999999999999999 5666789999986 777653 2   56667766666542111 


Q ss_pred             hhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEE
Q 024465          153 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKF  232 (267)
Q Consensus       153 ~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F  232 (267)
                      .                   .+.++.+.+.     ++++||.+.||+|+|+.|+++|.    +|..|+++|.|..+.|+|
T Consensus       620 ~-------------------~~~~~~~~~~-----~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~  671 (693)
T PRK00227        620 P-------------------APGITATFWH-----GNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQA  671 (693)
T ss_pred             c-------------------cCCCCceEee-----CcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEE
Confidence            0                   1223333332     38999999999999999999999    899999999999999999


Q ss_pred             EEEeCCCCCChHHHHHHHHHHHHHc
Q 024465          233 HVSYGGAALNSSLSQVLVNCLRYYL  257 (267)
Q Consensus       233 ~v~d~G~~l~~~~~~~L~~~L~~~l  257 (267)
                      |+..      ...+..+...+..+|
T Consensus       672 ~~~~------~~~r~~~~~~~~~~~  690 (693)
T PRK00227        672 ALKP------GFDRATVERDVTRVL  690 (693)
T ss_pred             EecC------cccHHHHHHHHHHHH
Confidence            9962      112455566665554

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.24  E-value=5e-11  Score=122.55  Aligned_cols=80  Identities=28%  Similarity=0.389  Sum_probs=71.7

Q ss_pred             CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465           59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR  138 (267)
Q Consensus        59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~  138 (267)
                      .+|.|.+.+..+.++++|+|+++||||||++|+++|+++|+||++|+|+|.++.+.|+|||++. +|.++.++  ++.|+
T Consensus       693 ~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~--~~~l~  769 (774)
T PRK03381        693 APPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGA-AGGPLADA--RAAVE  769 (774)
T ss_pred             CCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECC-CCCcCchH--HHHHH
Confidence            4678899999999999999999999999999999999999999999999998899999999997 89988653  56666


Q ss_pred             HHH
Q 024465          139 LTI  141 (267)
Q Consensus       139 ~~L  141 (267)
                      +.|
T Consensus       770 ~~L  772 (774)
T PRK03381        770 QAV  772 (774)
T ss_pred             HHh
Confidence            654

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.22  E-value=9e-11  Score=121.82  Aligned_cols=83  Identities=23%  Similarity=0.335  Sum_probs=74.2

Q ss_pred             CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465           59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR  138 (267)
Q Consensus        59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~  138 (267)
                      .+|.|.+.+..+.++|+|.|+++||||||++|+++|+.+|+||+.|+|+|.++.+.|+|||..    .+..+++++++|+
T Consensus       772 ~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~----~~~~~~~~~~~l~  847 (856)
T PRK03059        772 ITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG----SGLSDNRLQIQLE  847 (856)
T ss_pred             CCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC----CCCCCHHHHHHHH
Confidence            457899999889999999999999999999999999999999999999999888899999954    2245678899999


Q ss_pred             HHHHHHh
Q 024465          139 LTIINNL  145 (267)
Q Consensus       139 ~~L~~~L  145 (267)
                      +.|.++|
T Consensus       848 ~~L~~~L  854 (856)
T PRK03059        848 TELLDAL  854 (856)
T ss_pred             HHHHHHh
Confidence            9988766

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.18  E-value=1.5e-10  Score=120.23  Aligned_cols=85  Identities=27%  Similarity=0.399  Sum_probs=78.5

Q ss_pred             CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465           59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR  138 (267)
Q Consensus        59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~  138 (267)
                      .+|.|.|++..++++|+|.|.|.||||||++|+++|.++|+||.+|+|.|.++...|.|+|++. .|.++.+ ++++.|+
T Consensus       765 ~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~-~g~~~~~-~~~~~l~  842 (850)
T TIGR01693       765 VPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL-FGLKLTD-EEEQRLL  842 (850)
T ss_pred             CCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECC-CCCCCCH-HHHHHHH
Confidence            4689999999999999999999999999999999999999999999999999888999999987 8888876 7888899


Q ss_pred             HHHHHHh
Q 024465          139 LTIINNL  145 (267)
Q Consensus       139 ~~L~~~L  145 (267)
                      +.|.++|
T Consensus       843 ~~L~~~l  849 (850)
T TIGR01693       843 EVLAASV  849 (850)
T ss_pred             HHHHHHh
Confidence            8887755

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=9e-10  Score=111.22  Aligned_cols=84  Identities=24%  Similarity=0.394  Sum_probs=74.4

Q ss_pred             CCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHH
Q 024465           60 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL  139 (267)
Q Consensus        60 ~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~  139 (267)
                      +|.|.|.+...+.+++++|.+.||||||++++++|.+++++|+.|+|+|.|+.+.|+|+|++. .|.+++ ++..+.+.+
T Consensus       778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~-~~~~l~-~~~~q~l~~  855 (867)
T COG2844         778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDA-DGQALN-AELRQSLLQ  855 (867)
T ss_pred             CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecc-ccccCC-HHHHHHHHH
Confidence            599999999999999999999999999999999999999999999999999999999999998 898884 455555666


Q ss_pred             HHHHHh
Q 024465          140 TIINNL  145 (267)
Q Consensus       140 ~L~~~L  145 (267)
                      .|.+++
T Consensus       856 ~ll~al  861 (867)
T COG2844         856 RLLEAL  861 (867)
T ss_pred             HHHHHh
Confidence            655444

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=99.03  E-value=3.5e-09  Score=75.49  Aligned_cols=69  Identities=32%  Similarity=0.498  Sum_probs=60.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  257 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l  257 (267)
                      +.|.|.+.|+||+|++|+++|+++|++|.++.+.+.++...+.|++.+ +|.+.+.+.++.|+++|...+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~~   70 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDAL   70 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence            367899999999999999999999999999999998889999999987 666665557788999887653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=99.02  E-value=4.1e-09  Score=75.15  Aligned_cols=69  Identities=30%  Similarity=0.525  Sum_probs=59.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  144 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~  144 (267)
                      +.|.|.++|+||+|++++++|+++|++|.++.+.+.++...+.|++... ++.. .+++++++|++.|..+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRP-LDPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhh
Confidence            3688999999999999999999999999999999988866799999886 6555 4567889999887653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=98.94  E-value=1.1e-08  Score=74.45  Aligned_cols=64  Identities=19%  Similarity=0.290  Sum_probs=52.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec-CCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  257 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~-g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l  257 (267)
                      ..|.|.++|||||+++|+.+|..+|+||..|+|.|. .+.+.|+|+|.+ +|.-     -..|.++|+.+|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence            467899999999999999999999999999999654 688999999998 6654     134455555544

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.63  E-value=4.9e-07  Score=66.72  Aligned_cols=65  Identities=15%  Similarity=0.196  Sum_probs=53.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  145 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L  145 (267)
                      +.+|+|.|+||||+++.++.+|+++|+||.+.+..+.++.+.-.+.|.-+        ++..++|+..|.+..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999877777542        357788888887743

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.54  E-value=1.3e-06  Score=61.40  Aligned_cols=61  Identities=18%  Similarity=0.215  Sum_probs=46.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe--eEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV--KQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~--~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      +.|.|.++||||+|++++++|+++|+||.++.+.+.+++  ....+.+.+         ....+++.+.|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence            478999999999999999999999999999999999884  332233322         2455666666654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.50  E-value=1.2e-06  Score=64.61  Aligned_cols=64  Identities=17%  Similarity=0.230  Sum_probs=51.7

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  256 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~  256 (267)
                      ..+|.+.++||||+++.|+++|+++|+||...+.++.|++..-.+.|+-.     +...+.|+++|...
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-----EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-----HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-----cccHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999998888888544     33556777777665

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.43  E-value=5.6e-07  Score=63.21  Aligned_cols=39  Identities=23%  Similarity=0.453  Sum_probs=36.4

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV  227 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~  227 (267)
                      |.|.+.++||||+|++|+++|+++|+||..+...+.++.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~   39 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG   39 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence            578899999999999999999999999999999998875

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.42  E-value=2.2e-06  Score=63.42  Aligned_cols=62  Identities=13%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      .+|++.|+||||+.++++..|+++|+||.+.+.+..++.+.-...+..    .+    ...+.|++.|..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~----~~----~~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG----SW----DAIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe----cc----ccHHHHHHHHHH
Confidence            689999999999999999999999999999999998887754444432    11    124566666555

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.28  E-value=4.7e-06  Score=61.12  Aligned_cols=64  Identities=9%  Similarity=0.029  Sum_probs=50.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  145 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L  145 (267)
                      +|+|.++||||++++++++|+++|+||.+.+..+.++.+.-.|.+.-+ .+.      ..+.|++.|+...
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~~------~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DSA------DSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CCC------CHHHHHHHHHHHH
Confidence            479999999999999999999999999999988888777666777643 221      2466777766633

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.27  E-value=3.2e-06  Score=62.01  Aligned_cols=46  Identities=20%  Similarity=0.213  Sum_probs=40.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      ++++.++||||++++||++|+++|+||...+..+.++.-.-.|.+.
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~   46 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQ   46 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEE
Confidence            3689999999999999999999999999999999887766666664

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.26  E-value=3.8e-06  Score=59.57  Aligned_cols=66  Identities=14%  Similarity=0.316  Sum_probs=56.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      ++|+|.|+|+.||-.|+|+++.+.|++|..+.+.|+|.+.+-.|+|...  ...+  +-+|..|+++|.+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~   66 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMS   66 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHh
Confidence            4799999999999999999999999999999999999999888999864  2222  3578888888765

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=98.06  E-value=3e-05  Score=58.60  Aligned_cols=47  Identities=13%  Similarity=0.240  Sum_probs=39.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  234 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v  234 (267)
                      .+++.+.++||||++++|+++|+++|+||...+-.+.++...-.+.+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v   49 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLV   49 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEE
Confidence            57899999999999999999999999999999988876544433333

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.06  E-value=1.4e-05  Score=58.25  Aligned_cols=44  Identities=16%  Similarity=0.371  Sum_probs=36.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      +|.+.|+||||++++||++|+++|+||...+..+....  ..|++.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~--~~f~~~   44 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDS--GRFFMR   44 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCC--CeEEEE
Confidence            37899999999999999999999999999998874322  347775

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.02  E-value=4.7e-05  Score=56.27  Aligned_cols=40  Identities=18%  Similarity=0.360  Sum_probs=36.4

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCee
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVA  228 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a  228 (267)
                      ++|.+.|+||||+++.|+++|+++|+||...+..+.+++-
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F   41 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEF   41 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEE
Confidence            5788999999999999999999999999999998866654

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.01  E-value=2.6e-05  Score=58.86  Aligned_cols=64  Identities=8%  Similarity=0.109  Sum_probs=48.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      .+|++.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+ . ..    ...+.|++.|..
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~-~~----~~~~~L~~~l~~   65 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-E-SN----LDFAELQEELEE   65 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-C-CC----CCHHHHHHHHHH
Confidence            4789999999999999999999999999999999977666555555432 1 01    124566776665

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.00  E-value=2.8e-05  Score=57.21  Aligned_cols=45  Identities=22%  Similarity=0.431  Sum_probs=38.3

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe--eeeEEEEE
Q 024465          191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV--AKDKFHVS  235 (267)
Q Consensus       191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~--a~d~F~v~  235 (267)
                      |.+.|+||||++++|+++|+++|+||.+.+..|.+..  ..+.|+++
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~   48 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQ   48 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEE
Confidence            6799999999999999999999999999999998732  34556554

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.98  E-value=2.6e-05  Score=56.84  Aligned_cols=65  Identities=17%  Similarity=0.127  Sum_probs=44.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      +|+|.|+||||+++++++.|+++|+||.+.+..+.....  .|+++-.-+..+  .+-..+.|++.|..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~--~f~~~~~~~~~~--~~~~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSG--RFFMRVEFELEG--FDLSREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCC--eEEEEEEEEeCC--CCCCHHHHHHHHHH
Confidence            479999999999999999999999999999998743322  244432101111  00135667777665

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.98  E-value=5e-05  Score=57.30  Aligned_cols=46  Identities=15%  Similarity=0.192  Sum_probs=38.9

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  234 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v  234 (267)
                      .+|.+.|+||||++++|+++|+++|+||...+..+.++...-.+.+
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v   47 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIV   47 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEE
Confidence            5788999999999999999999999999999998876654434444

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.97  E-value=6.5e-05  Score=55.29  Aligned_cols=36  Identities=17%  Similarity=0.249  Sum_probs=34.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      +|+|.|+|+||++++++..|+++|+||.+.+..+.+
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~   36 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS   36 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence            478999999999999999999999999999999987

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.91  E-value=0.00035  Score=55.92  Aligned_cols=114  Identities=19%  Similarity=0.302  Sum_probs=82.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCCCch
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESS  153 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~~~~  153 (267)
                      -+|+|+..++||-|...+.+|.+.|+||..-+|.-+++.-+-...|..         +++.   .+.|+++  +      
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~---------~d~A---~~~Lee~--g------   63 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR---------PDEA---HSVLEEA--G------   63 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC---------hHHH---HHHHHHC--C------
Confidence            378999999999999999999999999999888888876654455533         2221   2232220  0      


Q ss_pred             hHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEe-cCCeeeeEE
Q 024465          154 EQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKF  232 (267)
Q Consensus       154 ~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T-~g~~a~d~F  232 (267)
                                         |.    |      ....++-+...|+||-|+.|..+|.+.++|+..+-.-+ ..++|.-.|
T Consensus        64 -------------------F~----V------r~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~  114 (142)
T COG4747          64 -------------------FT----V------RETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIV  114 (142)
T ss_pred             -------------------cE----E------EeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEE
Confidence                               00    1      12456778899999999999999999999999988644 445566666


Q ss_pred             EEEe
Q 024465          233 HVSY  236 (267)
Q Consensus       233 ~v~d  236 (267)
                      .+.|
T Consensus       115 r~ed  118 (142)
T COG4747         115 RVED  118 (142)
T ss_pred             EhhH
Confidence            5533

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.90  E-value=5.2e-05  Score=55.94  Aligned_cols=63  Identities=29%  Similarity=0.386  Sum_probs=46.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVNCLR  254 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~  254 (267)
                      .+.|.|.+.||||+|++|++++++.|++|..+.+.+.  ++.+.-.|.+.=..    .+.++.|.+.|+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d----~~~L~~ii~~L~   70 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD----LEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS----HHHHHHHHHHHC
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC----HHHHHHHHHHHH
Confidence            5689999999999999999999999999999999885  45666666663221    125566666554

>PRK00194 hypothetical protein; Validated

Probab=97.87  E-value=8.5e-05  Score=56.08  Aligned_cols=48  Identities=10%  Similarity=0.196  Sum_probs=41.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEE
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT  120 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~  120 (267)
                      ..+|+|.|+||||+++++++.|+++|+||.+.+..+.++.+.-.+.+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~   50 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence            579999999999999999999999999999999988776555444554

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.81  E-value=7.4e-05  Score=53.09  Aligned_cols=67  Identities=21%  Similarity=0.267  Sum_probs=54.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  256 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~  256 (267)
                      ++|.|.|+|+.||=.+++|++.++|++|.++.++|.|.=.--+|.|.....++.- .-..|+++|..+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~-rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKV-RWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcc-cHHHHHHHHHhc
Confidence            4688999999999999999999999999999999999999999999753222211 446677776654

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.73  E-value=0.0003  Score=51.85  Aligned_cols=62  Identities=16%  Similarity=0.260  Sum_probs=45.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-C-eeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-S-VKQTKFFITRLDTGRKVEDPDLLERIRLTII  142 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~-~-~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~  142 (267)
                      +.+.|.+.||||+|.+|+.++.++|+||.+..+.+.. + .+.-.|.|.-       .+.+.+++|...|+
T Consensus         7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-------~d~~~L~~ii~~L~   70 (80)
T PF13291_consen    7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-------KDLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-------SSHHHHHHHHHHHC
T ss_pred             EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-------CCHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999974 4 3344455543       24567777777754

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=97.62  E-value=0.00018  Score=62.47  Aligned_cols=49  Identities=18%  Similarity=0.266  Sum_probs=45.5

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      ++++|.+.++|||||++.|+++|+++|+||...+.+..|+.-.-.+.|+
T Consensus         7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs   55 (190)
T PRK11589          7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS   55 (190)
T ss_pred             cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe
Confidence            5889999999999999999999999999999999999999877777773

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.58  E-value=0.00061  Score=49.04  Aligned_cols=61  Identities=20%  Similarity=0.351  Sum_probs=43.9

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465          191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY  255 (267)
Q Consensus       191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~  255 (267)
                      |.+.+.||||+|++|+.++++.|+||......+.. +.+.-.|.+.-.+.    ++++.+.+.|..
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~----~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSE----EHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCH----HHHHHHHHHHhc
Confidence            67899999999999999999999999999887653 45555555522221    145555555543

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.58  E-value=0.00098  Score=47.95  Aligned_cols=61  Identities=16%  Similarity=0.197  Sum_probs=46.4

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      +.|.+.||||+|++++.+|++.|.||.+....+...+. .-.|.+.-       .+.+.++++.+.|+.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-------~~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-------PSEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-------CCHHHHHHHHHHHhc
Confidence            67899999999999999999999999998887765444 33455542       234677777777554

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.51  E-value=0.0014  Score=48.34  Aligned_cols=66  Identities=12%  Similarity=0.289  Sum_probs=48.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCC-eeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVSYGGAALNSSLSQVLVNCLRY  255 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~-~a~d~F~v~d~G~~l~~~~~~~L~~~L~~  255 (267)
                      +.+.+...|+||.|++|..+|+++|+||.+......+. ...-.|+|.-+|. .+++..+.+.+.|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~-~~~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH-IEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC-CCCHHHHHHHHHHHH
Confidence            45677889999999999999999999999998776653 4555777765665 334444444455544

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.46  E-value=0.0032  Score=58.08  Aligned_cols=36  Identities=14%  Similarity=0.107  Sum_probs=33.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN  107 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~  107 (267)
                      ...+|+|.|+||||+.+.++..|+++|+||.+.+.+
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            346899999999999999999999999999999997

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.42  E-value=0.0011  Score=61.09  Aligned_cols=44  Identities=20%  Similarity=0.391  Sum_probs=39.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEe--cCCeeeeEEEEE
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFHVS  235 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T--~g~~a~d~F~v~  235 (267)
                      .+++.+.|+|||||+++||++|+++|+||...+..+  .++    .|.+.
T Consensus         6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g----~F~m~   51 (286)
T PRK06027          6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG----RFFMR   51 (286)
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC----eEEEE
Confidence            678999999999999999999999999999999998  555    36554

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.42  E-value=0.00021  Score=54.46  Aligned_cols=40  Identities=15%  Similarity=0.317  Sum_probs=33.7

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV  227 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~  227 (267)
                      ..+|.|.+.||||+.+.|+++|+++|+||.+..=+-..+.
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~   42 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGF   42 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhh
Confidence            5789999999999999999999999999998764333333

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.41  E-value=0.0074  Score=55.56  Aligned_cols=67  Identities=19%  Similarity=0.132  Sum_probs=49.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT--EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  144 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T--~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~  144 (267)
                      ...+|+|.|+||||+++.++.+|+++|+||.+.+.++  .++.+.-.+.+.-  +..+    ..++.|+..|++.
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~----~~~~~L~~~L~~l   73 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLI----FNLETLRADFAAL   73 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCC----CCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999  5554333333322  1111    2356777777663

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.38  E-value=0.00068  Score=46.41  Aligned_cols=46  Identities=20%  Similarity=0.351  Sum_probs=38.9

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC-CeeeeEEEEEe
Q 024465          191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSY  236 (267)
Q Consensus       191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~~a~d~F~v~d  236 (267)
                      +.+...|+||.|++++.+|.++|+||.+..+...+ +.+.-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            35788999999999999999999999999987765 66777777743

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.30  E-value=0.0011  Score=48.18  Aligned_cols=35  Identities=31%  Similarity=0.568  Sum_probs=32.6

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  224 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~  224 (267)
                      .|+|.+.||+|+|++|+.++++.|++|.+.++.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            47899999999999999999999999999999775

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.29  E-value=0.0013  Score=46.77  Aligned_cols=45  Identities=13%  Similarity=0.335  Sum_probs=37.4

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      ..+.|..+|+||.|++|+.+|.++|+||.+..+...++.  .+|.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            357788999999999999999999999999998776553  555553

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.25  E-value=0.0016  Score=47.39  Aligned_cols=59  Identities=14%  Similarity=0.210  Sum_probs=43.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      .+.|.+.||+|+|++|+.++++.|+||....+.+. +...  |.+.       +.+.+.++.+...|..
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~-------v~~~~~L~~li~~L~~   60 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFP-------TIEFEKLQTLMPEIRR   60 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEE--EEeE-------ecCHHHHHHHHHHHhC
Confidence            47899999999999999999999999999999775 3311  2232       2234567777776543

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.25  E-value=0.0022  Score=44.65  Aligned_cols=44  Identities=18%  Similarity=0.357  Sum_probs=37.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC--CeeeeEEEE
Q 024465          191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHV  234 (267)
Q Consensus       191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g--~~a~d~F~v  234 (267)
                      +.+.+.|+||+|++|+++|+++|++|.+..+...+  +.+.-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67889999999999999999999999999987765  455556666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.24  E-value=0.0033  Score=44.10  Aligned_cols=62  Identities=13%  Similarity=0.177  Sum_probs=41.9

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC----CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG----SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~----~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      +.|.++|+||+|++++.+|.+.|+||.+.......    .+... +.++-.  .   .+.+.++.+.+.|.+
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~-~~i~v~--~---~~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVE-VELTLE--T---RGAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEE-EEEEEE--e---CCHHHHHHHHHHHHH
Confidence            35788999999999999999999999988776543    23322 223221  1   134566777777543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.20  E-value=0.002  Score=59.10  Aligned_cols=63  Identities=11%  Similarity=0.086  Sum_probs=45.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~--~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      +|+|.|+||||+.+.+++.|+++|+||.+.+.+...  +.+.-.+.+.-.  +..+    ..+.|++.|.+
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~   66 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKS   66 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHH
Confidence            689999999999999999999999999999999864  444434444331  2112    23556666555

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.19  E-value=0.0013  Score=60.66  Aligned_cols=46  Identities=9%  Similarity=0.211  Sum_probs=38.7

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      .+.+++.|+||||++++||++|+++|+||......|..  ..+.|...
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~--~~~~F~m~   52 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDR--LSGRFFMR   52 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecC--CCCeEEEE
Confidence            67899999999999999999999999999999877543  44455554

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.16  E-value=0.0037  Score=43.80  Aligned_cols=34  Identities=29%  Similarity=0.575  Sum_probs=29.8

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec
Q 024465          191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  224 (267)
Q Consensus       191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~  224 (267)
                      +.+..+|+||+|++|+++|+++|++|.+......
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~   34 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA   34 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence            3577899999999999999999999998886554

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.14  E-value=0.019  Score=52.92  Aligned_cols=66  Identities=12%  Similarity=0.034  Sum_probs=46.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC--eeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  144 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~--~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~  144 (267)
                      ...+|+|.|+||||+.+.++..|+++|+||.+.+.++...  .+.-.+.+..+ .+.      ..+.|++.|.+.
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~~------~~~~L~~~L~~l   73 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EGL------DEDALRAGFAPI   73 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CCC------CHHHHHHHHHHH
Confidence            3468999999999999999999999999999999975432  22223334322 221      245666666653

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=97.12  E-value=0.0024  Score=44.68  Aligned_cols=60  Identities=20%  Similarity=0.300  Sum_probs=42.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec-C-CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-G-LVAKDKFHVSYGGAALNSSLSQVLVNCLR  254 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~-g-~~a~d~F~v~d~G~~l~~~~~~~L~~~L~  254 (267)
                      .|.+.+.|+||+|.+|+++|+++|++|.+....+. + +.+.-.|.+ + .  .+ +..+.+.+.|.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-~--~~-~~~~~l~~~l~   63 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV-E-G--DD-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE-E-C--CH-HHHHHHHHHHh
Confidence            46788999999999999999999999999998775 3 333333444 2 1  12 34455555554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=97.08  E-value=0.0037  Score=44.55  Aligned_cols=61  Identities=18%  Similarity=0.244  Sum_probs=42.1

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLR  254 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g--~~a~d~F~v~d~G~~l~~~~~~~L~~~L~  254 (267)
                      .|.+.+.|+||+|.+|+++|+++|++|......+..  +.+.-.|.+ .   ..+....+++.+.|+
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~-~---~~~~~~l~~~i~~L~   64 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT-H---ETSEAALNAALAEIE   64 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE-c---cCCHHHHHHHHHHHH
Confidence            467889999999999999999999999999876543  333333333 2   222334555555554

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.06  E-value=0.001  Score=50.77  Aligned_cols=67  Identities=9%  Similarity=0.094  Sum_probs=47.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  145 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L  145 (267)
                      ..+|+|.++||||+.++++.+|+++|.||++-.-+-..+.+.-.+.+.-+  -+    ......+++.|....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~----~~d~~~lr~~l~~~~   69 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KE----VVDFAALRDELAAEG   69 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hH----hccHHHHHHHHHHHH
Confidence            46899999999999999999999999999997776666666544555321  11    123455666655433

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.06  E-value=0.0067  Score=43.02  Aligned_cols=47  Identities=21%  Similarity=0.386  Sum_probs=37.0

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC-C-eeeeEEEEE
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-L-VAKDKFHVS  235 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~-~a~d~F~v~  235 (267)
                      +.+.+..+|+||.|++|+++|+++|++|......... + ...-.|.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            4577899999999999999999999999988776652 2 344455553

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.05  E-value=0.0035  Score=44.60  Aligned_cols=57  Identities=18%  Similarity=0.370  Sum_probs=40.3

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHH
Q 024465          191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLV  250 (267)
Q Consensus       191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v~d~G~~l~~~~~~~L~  250 (267)
                      +-+...|+||.+++|+++|+++|+||.+..+...  ++.+.-+|.+  ++ +.+.+..+.|+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v--~~-~~~~~~~~~l~   60 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV--DE-PVPDEVLEELR   60 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe--CC-CCCHHHHHHHH
Confidence            3468999999999999999999999998887543  4455545544  44 44334444444

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.03  E-value=0.0037  Score=57.67  Aligned_cols=35  Identities=11%  Similarity=0.214  Sum_probs=33.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID  222 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~  222 (267)
                      .++|.+.|+|||||++.||++|+++|+||..+.-.
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            56899999999999999999999999999999875

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=97.01  E-value=0.0051  Score=51.86  Aligned_cols=66  Identities=12%  Similarity=0.262  Sum_probs=47.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  257 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l  257 (267)
                      ..|.+...|+||.|++|+.+|+++|+||.+..+...++.....+.+.=+|   ++...++|.+-|.+.+
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~---d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG---DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcCc
Confidence            36888999999999999999999999999998876654433333333234   2445667777666544

acetohydroxyacid synthase is a synonym.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=97.00  E-value=0.0089  Score=45.74  Aligned_cols=70  Identities=11%  Similarity=0.238  Sum_probs=53.4

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR  259 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~~  259 (267)
                      .+.|-+...|+||-|+++-..|+++|||+.+.+......+ -.=.|||.-+|. . ++..+++.+.|...|+.
T Consensus        14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~-~-~~~~~~~l~~L~~~~~~   84 (90)
T cd04931          14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK-S-APALDPIIKSLRNDIGA   84 (90)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-C-CHHHHHHHHHHHHHhCC
Confidence            5777788899999999999999999999999998776544 445788854776 2 45445666777777653

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.00  E-value=0.006  Score=56.04  Aligned_cols=44  Identities=23%  Similarity=0.436  Sum_probs=35.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      +|.+.|+||||+++.||++|+++|+||....-.+.  ...+.|+.+
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~--~~~~~F~mr   45 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD--PETGRFFMR   45 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc--CCCCeEEEE
Confidence            57899999999999999999999999999887664  222345543

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.98  E-value=0.0023  Score=57.97  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=36.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      ...++++.|+|+||+.+.|++.|.++|+||.++.-++..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~   44 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDP   44 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccccc
Confidence            567999999999999999999999999999999999653

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.95  E-value=0.0078  Score=41.97  Aligned_cols=33  Identities=18%  Similarity=0.521  Sum_probs=30.4

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEe
Q 024465          191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT  223 (267)
Q Consensus       191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T  223 (267)
                      |.+.+.|+||.|++|+++|+++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            568899999999999999999999999998765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.94  E-value=0.0092  Score=42.86  Aligned_cols=62  Identities=13%  Similarity=0.101  Sum_probs=44.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-eEEEEEEEeCCCCCCCCChH-HHHHHHHHHHH
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPD-LLERIRLTIIN  143 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~-~~d~F~I~~~~~g~~l~~~~-~~erl~~~L~~  143 (267)
                      .+.|.+.|+||+|++++.+|+++|.||......+..++ +.-.|.+...       +.+ .+++|.+.|.+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence            47899999999999999999999999999877554433 3334555431       223 66777776544

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.93  E-value=0.007  Score=44.94  Aligned_cols=64  Identities=14%  Similarity=0.201  Sum_probs=43.4

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  255 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~  255 (267)
                      ..|.+...|+||+|++|+.+|+..|.||.+..+.-..+...-.+-+.-.|.   +...++|.+-|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~---~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT---ENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC---HHHHHHHHHHHhC
Confidence            467899999999999999999999999999998744444333333321221   2234455555443

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.92  E-value=0.0047  Score=44.42  Aligned_cols=63  Identities=21%  Similarity=0.198  Sum_probs=44.3

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY  255 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~  255 (267)
                      .|.+.+.||||+|++|+++|++.|++|......+.. +.+.-.|.+.-.+.   +..++.|.+.|+.
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~---~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM---NGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch---HHHHHHHHHHHhc
Confidence            578999999999999999999999999999875543 44555555533221   1144555555543

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.91  E-value=0.0059  Score=52.31  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=33.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  224 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~  224 (267)
                      ..+.+.+.|+||+|++|+.+|+..|+||.+..+.+.
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t   38 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPA   38 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEc
Confidence            468899999999999999999999999999999663

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.86  E-value=0.0091  Score=46.24  Aligned_cols=66  Identities=11%  Similarity=0.150  Sum_probs=47.7

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  256 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~  256 (267)
                      ....|.+...|+||+|++|+..|+..|.||.+..+.-.+......+.+.-.+    +...++|.+-|.+.
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~----~~~i~Qi~kQL~KL   72 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND----DQRLEQMISQIEKL   72 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC----chHHHHHHHHHhCC
Confidence            4577899999999999999999999999999999866655544444433222    23455666555543

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.85  E-value=0.011  Score=41.98  Aligned_cols=62  Identities=15%  Similarity=0.190  Sum_probs=42.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTII  142 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~  142 (267)
                      -+.|.+.|+||+|.+++.+|.++|+||......+..+ +.....++...      .+...++.+...|.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~------~~~~~l~~~i~~L~   64 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE------TSEAALNAALAEIE   64 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc------CCHHHHHHHHHHHH
Confidence            4678899999999999999999999999888765543 33332333321      13455565665544

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.85  E-value=0.0067  Score=42.09  Aligned_cols=35  Identities=31%  Similarity=0.505  Sum_probs=30.6

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC
Q 024465          191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  225 (267)
Q Consensus       191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g  225 (267)
                      +.+..+|+||-|++++.+|+++|+||.+......+
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            56788999999999999999999999988765544

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.84  E-value=0.0073  Score=45.65  Aligned_cols=65  Identities=15%  Similarity=0.134  Sum_probs=48.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      ..+++...|+||.|+++++.|+..||||.+-.+..+.+.-+-.+.|.-. .|    +++.++++.+.|..
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~-~~----d~~~ieqI~kQL~K   67 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD-IQ----DDTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe-CC----CHHHHHHHHHHHhC
Confidence            3689999999999999999999999999999997776644433443331 13    34667777777654

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.83  E-value=0.0051  Score=55.78  Aligned_cols=63  Identities=16%  Similarity=0.334  Sum_probs=47.7

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe----CCCCCChH-HHHHHHH
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY----GGAALNSS-LSQVLVN  251 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d----~G~~l~~~-~~~~L~~  251 (267)
                      ...+|.++|+|+|||++.|+..|+++|+||..+.--  ++.....|+.+-    .+.+++.+ .++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf--~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF--DDPETGRFFMRVEFEGEGGPLDREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc--cccccCeEEEEEEEecCCCcccHHHHHHHHHH
Confidence            468999999999999999999999999999988755  456667788863    45555444 3344433

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.80  E-value=0.01  Score=45.98  Aligned_cols=66  Identities=12%  Similarity=0.147  Sum_probs=49.0

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      .+...+++...|+||.|.++++.|+..||||.+-.+..+++.-+--+.|.-.  +     ++.+++|.+.|..
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-----~~~i~Qi~kQL~K   71 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-----DQRLEQMISQIEK   71 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-----chHHHHHHHHHhC
Confidence            4556799999999999999999999999999998887776644333444321  1     2466777777554

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.78  E-value=0.01  Score=44.04  Aligned_cols=64  Identities=8%  Similarity=0.068  Sum_probs=46.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      ..+++...|+||.|.+++++|+..|+||.+-.+.-+.+.-.-.+.|.-  .|    +++..++|.+.|..
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~--~~----~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA--VC----TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE--EC----CHHHHHHHHHHHhC
Confidence            368999999999999999999999999998888755543332333332  12    24667777777554

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.76  E-value=0.012  Score=49.91  Aligned_cols=65  Identities=12%  Similarity=0.252  Sum_probs=44.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  256 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~  256 (267)
                      ..|.+...|+||.|++|+.+|+++|+||.+..+....+.....+.+.=+|   ++...+++.+-|.+.
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~---~~~~i~qi~kQl~KL   67 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG---DEQVIEQITKQLNKL   67 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcc
Confidence            46888999999999999999999999999998865543333323332133   233455665555543

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.71  E-value=0.002  Score=45.55  Aligned_cols=44  Identities=20%  Similarity=0.379  Sum_probs=34.8

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465          191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  234 (267)
Q Consensus       191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v  234 (267)
                      +-+.+.|+||+|++|+.+|.+.|+||.+....+.++.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            45689999999999999999999999888766555445444444

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.66  E-value=0.026  Score=40.84  Aligned_cols=63  Identities=16%  Similarity=0.310  Sum_probs=44.9

Q ss_pred             EEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCC-eeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465          192 YIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVSYGGAALNSSLSQVLVNCLRY  255 (267)
Q Consensus       192 ~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~-~a~d~F~v~d~G~~l~~~~~~~L~~~L~~  255 (267)
                      -+...|+||-|++|..+|+++|+||.+.+...... ...=.|||.-.|.. .+...+.+.+.|..
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~-~~~~~~~~l~~l~~   66 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHI-DDPDVKEALEELKR   66 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCC-CCHHHHHHHHHHHH
Confidence            35568999999999999999999999998765544 56667888656642 23334445555544

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.64  E-value=0.026  Score=39.25  Aligned_cols=40  Identities=13%  Similarity=0.134  Sum_probs=33.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc-CCeeE
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE-GSVKQ  114 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~-~~~~~  114 (267)
                      .+.+.+.|+||+|.+++.+|.++|++|......+. +++..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~   42 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGIS   42 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeE
Confidence            46788999999999999999999999999888765 34443

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.62  E-value=0.0091  Score=40.69  Aligned_cols=44  Identities=9%  Similarity=0.264  Sum_probs=35.9

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeeEEEEEE
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQTKFFI  119 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~-~~~~d~F~I  119 (267)
                      +.|...|+||.|.+++.+|.+.|+||....+...+ +...-.|.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v   45 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIF   45 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEE
Confidence            45788999999999999999999999999988876 333444444

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.60  E-value=0.028  Score=39.76  Aligned_cols=37  Identities=14%  Similarity=0.184  Sum_probs=33.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      ..+.|..+|+||.|.+++..|.++|+||.........
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~   38 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIR   38 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEee
Confidence            4678899999999999999999999999988777753

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.58  E-value=0.021  Score=39.89  Aligned_cols=36  Identities=17%  Similarity=0.199  Sum_probs=32.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      .+.|.++|+||.|++++..|.+++++|.........
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~   37 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER   37 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence            578899999999999999999999999988877654

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.57  E-value=0.018  Score=42.00  Aligned_cols=62  Identities=18%  Similarity=0.250  Sum_probs=44.0

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLR  254 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l~~~~~~~L~~~L~  254 (267)
                      .|-+...|+||-|+++-..|+++|+|+.+.+......+ ..=.|||.-+|   .++..+++.+.|.
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~---~~~~~~~~l~~L~   64 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV---DRGDLDQLISSLR   64 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc---ChHHHHHHHHHHH
Confidence            34456689999999999999999999999998666544 45577775477   2333344444443

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=96.57  E-value=0.0097  Score=61.04  Aligned_cols=72  Identities=19%  Similarity=0.221  Sum_probs=62.4

Q ss_pred             eEEEEEEe-CCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCC
Q 024465          188 RSLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRP  260 (267)
Q Consensus       188 ~t~l~i~~-~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~-~~~~L~~~L~~~l~~~  260 (267)
                      ...+.|.. +|++|+|+++..+|+.+|++|.+|.+.+ ++.+...|.|.. .|.+.++. ..|+++.++.-.++-+
T Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (693)
T PRK00227        546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDP  620 (693)
T ss_pred             CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcc
Confidence            35677777 9999999999999999999999999999 888999999998 88888777 6788888887666543

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.57  E-value=0.015  Score=43.98  Aligned_cols=64  Identities=11%  Similarity=0.201  Sum_probs=46.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHH
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYY  256 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~  256 (267)
                      .|.+...|+||.|++|+..|+..|+||.+..+..........+-+.- .|.   +...+++.+-|.+.
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d---~~~ieqI~kQL~Kl   68 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD---DTSLHILIKKLKQQ   68 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC---HHHHHHHHHHHhCC
Confidence            57788999999999999999999999999999776665555444433 242   23456666655543

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.57  E-value=0.014  Score=40.83  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=31.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  224 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~  224 (267)
                      .|.+.+.|+||.|++|++.|+++|++|.+....+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~   36 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE   36 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence            46788999999999999999999999999887665

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.53  E-value=0.019  Score=46.91  Aligned_cols=39  Identities=28%  Similarity=0.442  Sum_probs=35.8

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  225 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g  225 (267)
                      ..+.|.+.+.|+||+|++|+++|+++|++|.+....+..
T Consensus        55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~   93 (136)
T PRK08577         55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK   93 (136)
T ss_pred             cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence            488999999999999999999999999999999887754

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=96.52  E-value=0.022  Score=40.50  Aligned_cols=46  Identities=28%  Similarity=0.339  Sum_probs=35.4

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEE
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHV  234 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v  234 (267)
                      +.+.+..+|+||.|.+++++|.++|+||.+....-.  ++.+.-.|.+
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v   49 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV   49 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence            567888999999999999999999999998865332  2334444444

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.43  E-value=0.011  Score=41.83  Aligned_cols=45  Identities=9%  Similarity=0.217  Sum_probs=37.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEE
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT  120 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~  120 (267)
                      ..+.|..+|+||.|++++.+|.+.|+||....++..++.  ..+.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            367889999999999999999999999999988777663  334443

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.35  E-value=0.031  Score=47.14  Aligned_cols=62  Identities=19%  Similarity=0.262  Sum_probs=46.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      .++|...|+||.|++++++|++.|+||.+-.+...++ +... +.++-  +|    ++...++|.+.|..
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sr-iti~V--~~----d~~~i~qi~kQl~K   65 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSR-MTIVV--VG----DDKVLEQITKQLNK   65 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEE-EEEEE--EC----CHHHHHHHHHHHhc
Confidence            6889999999999999999999999999998887763 3332 33332  23    24567778877665

acetohydroxyacid synthase is a synonym.

>PRK08577 hypothetical protein; Provisional

Probab=96.34  E-value=0.081  Score=43.13  Aligned_cols=49  Identities=16%  Similarity=0.260  Sum_probs=40.2

Q ss_pred             EEEEeec--CCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           62 HVLIDQD--SNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        62 ~V~i~~~--~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      .+.+.+-  ..+..+.+.|.+.|+||+|++++.+|+++|+||......+..
T Consensus        43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~   93 (136)
T PRK08577         43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK   93 (136)
T ss_pred             EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence            4445433  345578999999999999999999999999999988877765

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.32  E-value=0.034  Score=47.68  Aligned_cols=66  Identities=11%  Similarity=0.174  Sum_probs=47.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  145 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L  145 (267)
                      ..+.|.+.|+||+|.++++.|+..|+||.+-.+....+.-.-.+.|.-+  |.    +..+++|++.|....
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~~----~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--GD----DRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--CC----HHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999986644433223443332  21    233677777776643

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.32  E-value=0.017  Score=39.98  Aligned_cols=44  Identities=14%  Similarity=0.180  Sum_probs=36.2

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeeEEEEEE
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFI  119 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~--~~~~d~F~I  119 (267)
                      +.|.+.|+||++.+++.+|.++|+||.+..+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            57899999999999999999999999999988765  333344555

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.31  E-value=0.041  Score=46.57  Aligned_cols=63  Identities=16%  Similarity=0.234  Sum_probs=47.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~-~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      ..++|...|+||.|+++++.|+..|+||.+-.+.... ++... +.++-  +|    +++.++++.+.|..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sr-iti~V--~~----~~~~i~qi~kQl~K   66 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSR-MTIVT--SG----DEQVIEQITKQLNK   66 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEE-EEEEE--EC----CHHHHHHHHHHHhc
Confidence            4688999999999999999999999999998887765 33332 33332  23    24667888877665

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.24  E-value=0.027  Score=41.80  Aligned_cols=46  Identities=17%  Similarity=0.252  Sum_probs=37.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC--CeeeeEEEE
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHV  234 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g--~~a~d~F~v  234 (267)
                      ..|.+...|+||.|++|+++|+..|.||.+..+....  +...=++.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v   51 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV   51 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE
Confidence            5688999999999999999999999999999986633  334444444

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.23  E-value=0.022  Score=36.38  Aligned_cols=35  Identities=34%  Similarity=0.718  Sum_probs=31.4

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC
Q 024465          191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  225 (267)
Q Consensus       191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g  225 (267)
                      |.+.+.|++|++++|+.+|.++|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            45788999999999999999999999999987654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.22  E-value=0.033  Score=39.97  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  109 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~  109 (267)
                      +.|.-+|+||-|++++.+|.++|.||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5778899999999999999999999998876665

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.21  E-value=0.054  Score=37.58  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=30.8

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  109 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~  109 (267)
                      +.+.+.|+||.+.+++..|+++|++|........
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~   35 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRK   35 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEec
Confidence            5788999999999999999999999998887663

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.19  E-value=0.036  Score=39.76  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=30.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec
Q 024465          191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  224 (267)
Q Consensus       191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~  224 (267)
                      +.+..+|+||-|++++.+|+++|.||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5678999999999999999999999998876554

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.10  E-value=0.088  Score=35.33  Aligned_cols=35  Identities=17%  Similarity=0.293  Sum_probs=31.7

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      +.|.+.|+||.+..++..|.+.+++|....+...+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD   35 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence            45789999999999999999999999999887765

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK07334 threonine dehydratase; Provisional

Probab=96.04  E-value=0.034  Score=53.41  Aligned_cols=64  Identities=17%  Similarity=0.267  Sum_probs=46.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec-----CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-----GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  255 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~-----g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~  255 (267)
                      .+.|.|.+.||||+|++|+++|++.++||.+....+.     ++.+.-.|.+.=.    +.+++++|.+.|+.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~----d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR----DAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC----CHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999998764     3344334444211    12256666666654

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.03  E-value=0.045  Score=37.82  Aligned_cols=36  Identities=17%  Similarity=0.323  Sum_probs=31.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      ++.|.-+|+||-|.+++.+|.++|+||.+...+...
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            367888999999999999999999999888776654

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.01  E-value=0.12  Score=37.93  Aligned_cols=65  Identities=18%  Similarity=0.311  Sum_probs=44.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTII  142 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~  142 (267)
                      +.+.+..+|+||.|+++...|.++|+||.+-.....++ ...-.|+|.-  +|. .. ....+.+...|.
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~--~~~-~~-~~~~~~~l~~l~   67 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF--EGH-IE-DPNVAEALEELK   67 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE--ECC-CC-CHHHHHHHHHHH
Confidence            34667779999999999999999999999887666544 2335577765  343 22 234444444443

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK04435 hypothetical protein; Provisional

Probab=96.01  E-value=0.091  Score=43.66  Aligned_cols=76  Identities=13%  Similarity=0.137  Sum_probs=53.5

Q ss_pred             EEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHHHHH
Q 024465           62 HVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLT  140 (267)
Q Consensus        62 ~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~  140 (267)
                      +.-+.....+....+.+.+.|+||+|+++..+|+++|+||..-......++. .-.|.|...  +.    ...++.|...
T Consensus        58 vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~~----~~~L~~Li~~  131 (147)
T PRK04435         58 VFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--SM----EGDIDELLEK  131 (147)
T ss_pred             eECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--Ch----HHHHHHHHHH
Confidence            3445555566778999999999999999999999999999988776554554 344555432  11    1356666666


Q ss_pred             HHH
Q 024465          141 IIN  143 (267)
Q Consensus       141 L~~  143 (267)
                      |+.
T Consensus       132 L~~  134 (147)
T PRK04435        132 LRN  134 (147)
T ss_pred             HHc
Confidence            544

>PRK07334 threonine dehydratase; Provisional

Probab=95.96  E-value=0.054  Score=52.00  Aligned_cols=63  Identities=14%  Similarity=0.217  Sum_probs=48.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc----CCeeE-EEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE----GSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~----~~~~~-d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      +.+.|.+.||||+|.+|+.+|++.+.||.+....+.    .++.. -.|.|.-       .+.+.+++|...|+.
T Consensus       327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            689999999999999999999999999999998765    34442 3344432       245778888888654

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.95  E-value=0.038  Score=37.18  Aligned_cols=35  Identities=34%  Similarity=0.664  Sum_probs=31.7

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC
Q 024465          191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  225 (267)
Q Consensus       191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g  225 (267)
                      |.+.+.|+||++.+|+..|.+++++|....+...+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD   35 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence            45779999999999999999999999999987765

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.92  E-value=0.041  Score=35.08  Aligned_cols=35  Identities=26%  Similarity=0.411  Sum_probs=31.9

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      |.+.++|+||++.+++++|.+.|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999999987764

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=95.89  E-value=0.063  Score=39.80  Aligned_cols=61  Identities=7%  Similarity=0.132  Sum_probs=45.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeE--EEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ--TKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~--d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      ..+++...|+||.|.++++.+...||||.+-.+..+.+.-.  -++.+  . +      +..++.|.+.|..
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v--~-~------~~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV--A-S------ERPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE--C-C------CchHHHHHHHHhc
Confidence            47899999999999999999999999999999977655433  23333  1 2      2455666666544

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=95.81  E-value=0.0059  Score=51.90  Aligned_cols=50  Identities=18%  Similarity=0.204  Sum_probs=45.8

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  236 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d  236 (267)
                      ++.+|...+.||||++..|+|...++|+|+...+++..|+...-+..|+.
T Consensus         4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg   53 (176)
T COG2716           4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG   53 (176)
T ss_pred             cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee
Confidence            37899999999999999999999999999999999999999887777743

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=95.78  E-value=0.67  Score=44.27  Aligned_cols=108  Identities=14%  Similarity=0.159  Sum_probs=68.9

Q ss_pred             CCeEEEEEE---eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465           71 SDATIVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  147 (267)
Q Consensus        71 ~~~t~V~V~---~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~  147 (267)
                      ++...|+|.   ..++||.+.++..+|.+.|++|..-......  .--.|.|..          +..+++.+.|...+..
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~----------~d~~~a~~~L~~~~~~  325 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE----------TDADEAVRALKDQSGA  325 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH----------HHHHHHHHHHHHHHHh
Confidence            467788888   5788999999999999999999754332111  212355532          2233444444432211


Q ss_pred             cCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEE
Q 024465          148 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESA  219 (267)
Q Consensus       148 ~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a  219 (267)
                      ..                          ...+.++   .+...|.+.+.   ++||+++++.++|++.|+||...
T Consensus       326 ~~--------------------------~~~i~~~---~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i  371 (401)
T TIGR00656       326 AG--------------------------LDRVEVE---EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI  371 (401)
T ss_pred             cC--------------------------CceEEEe---CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence            00                          0011122   24667777665   78999999999999999999853

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.70  E-value=0.076  Score=39.03  Aligned_cols=51  Identities=12%  Similarity=0.151  Sum_probs=40.3

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCC
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAA  240 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~  240 (267)
                      .|-+..+|+||-|+++-.+|+.+|+|+.+.+....... .+=.|||.-.|..
T Consensus         2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~   53 (74)
T cd04929           2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQ   53 (74)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCH
Confidence            34456689999999999999999999999998776444 5557888546654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=95.67  E-value=0.051  Score=47.66  Aligned_cols=60  Identities=13%  Similarity=0.346  Sum_probs=46.0

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHH
Q 024465          186 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQV  248 (267)
Q Consensus       186 s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v~d~G~~l~~~~~~~  248 (267)
                      +++..|-+.-.||||.+..|+.+|.++|+||..+.+.-.  |+.|.-+..+   ..+++++.+++
T Consensus       146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v---D~~v~~~vl~~  207 (208)
T TIGR00719       146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI---DKNIDDHIKDA  207 (208)
T ss_pred             CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe---CCCCCHHHHhh
Confidence            356778888999999999999999999999999999664  4555555555   45566654443

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.56  E-value=0.011  Score=41.73  Aligned_cols=38  Identities=16%  Similarity=0.219  Sum_probs=31.6

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK  113 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~  113 (267)
                      +.+.+.|+||+|.+++.+|.+.|+||......+.++.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a   39 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIG   39 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEE
Confidence            57799999999999999999999999887665544333

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PRK04435 hypothetical protein; Provisional

Probab=95.38  E-value=0.11  Score=43.23  Aligned_cols=66  Identities=18%  Similarity=0.183  Sum_probs=46.6

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec-CCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465          186 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSYGGAALNSSLSQVLVNCLR  254 (267)
Q Consensus       186 s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~-g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~  254 (267)
                      .....|.+...|+||+|++|.++|++.|+||........ ++.+.-.|-+.-.+.   ...+++|.++|.
T Consensus        67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~---~~~L~~Li~~L~  133 (147)
T PRK04435         67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM---EGDIDELLEKLR  133 (147)
T ss_pred             CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh---HHHHHHHHHHHH
Confidence            348899999999999999999999999999998876543 344555555533221   113455555554

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.36  E-value=0.091  Score=37.22  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=32.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  109 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~  109 (267)
                      +.+.+..+|+||.|..++.+|.++|+||.+......
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~   37 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS   37 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence            578899999999999999999999999998766544

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11899 prephenate dehydratase; Provisional

Probab=95.34  E-value=0.1  Score=48.00  Aligned_cols=54  Identities=15%  Similarity=0.134  Sum_probs=44.4

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCC
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAAL  241 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l  241 (267)
                      .+.|-+...|+||.|+++-.+|+++|||+++.+....+++ -.=.|||.-.|..-
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~  248 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPE  248 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCC
Confidence            4777777899999999999999999999999999776555 55578885478643

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.31  E-value=0.042  Score=39.04  Aligned_cols=39  Identities=15%  Similarity=0.318  Sum_probs=29.5

Q ss_pred             CcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          197 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       197 DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      |+||.|.+|+.+|+..|+||.+..+........-.+.++
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~   39 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIV   39 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEE
Confidence            789999999999999999999999988444433334443

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.27  E-value=0.061  Score=38.05  Aligned_cols=44  Identities=18%  Similarity=0.250  Sum_probs=34.1

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc--CCeeEEEEEE
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE--GSVKQTKFFI  119 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~--~~~~~d~F~I  119 (267)
                      +.+...|+||.++++++.|.++|+||.+-.....  ++...-.|.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v   47 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV   47 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence            4678999999999999999999999988877554  2333433444

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK06635 aspartate kinase; Reviewed

Probab=95.22  E-value=0.6  Score=44.62  Aligned_cols=111  Identities=17%  Similarity=0.268  Sum_probs=69.1

Q ss_pred             CCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhcc
Q 024465           71 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY  148 (267)
Q Consensus        71 ~~~t~V~V~-~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~  148 (267)
                      ++...|+|. ..++||.+.++..+|.+.|+||..-..+...++. --.|.|..          +..++..+.|.. +...
T Consensus       260 ~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~~  328 (404)
T PRK06635        260 KDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKDE  328 (404)
T ss_pred             CCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHHH
Confidence            455666665 5778999999999999999999975444333222 23354432          223333444433 1100


Q ss_pred             CCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEe---CCcccHHHHHHHHHHhCCccEEEEE
Q 024465          149 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE  220 (267)
Q Consensus       149 ~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~---~DRpGLL~~Itr~l~~~gl~I~~a~  220 (267)
                       .            +            ...+.+.+   +...+.+.+   .++||.+++|.++|+++|++|....
T Consensus       329 -~------------~------------~~~i~~~~---~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        329 -I------------G------------AESVTYDD---DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             -c------------C------------cceEEEcC---CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence             0            0            00111222   366677765   6899999999999999999998753

>PRK06291 aspartate kinase; Provisional

Probab=95.16  E-value=2.3  Score=41.66  Aligned_cols=110  Identities=12%  Similarity=0.185  Sum_probs=71.3

Q ss_pred             CCCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           70 NSDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        70 ~~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      .++.+.|+|.+.   +.||+++++..+|.+.|++|..-...+....  -.|.|..          +..++..+.|...+.
T Consensus       318 ~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~----------~d~~~av~~L~~~~~  385 (465)
T PRK06291        318 IKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDE----------ADLEKALKALRREFG  385 (465)
T ss_pred             eCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeH----------HHHHHHHHHHHHHHH
Confidence            356778888764   7899999999999999999987544332222  2355543          122333444444332


Q ss_pred             ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEEE
Q 024465          147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  220 (267)
Q Consensus       147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~  220 (267)
                      ....                          ..|.+.+   +...|.+.+.   +++|+++++..+|.+.|++|....
T Consensus       386 ~~~~--------------------------~~i~~~~---~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is  433 (465)
T PRK06291        386 EGLV--------------------------RDVTFDK---DVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS  433 (465)
T ss_pred             HhcC--------------------------cceEEeC---CEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence            2000                          0111222   4667777775   789999999999999999998554

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=95.06  E-value=0.16  Score=52.35  Aligned_cols=63  Identities=16%  Similarity=0.144  Sum_probs=48.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      +.|.|.+.||+|+|.+|+.+|+.++.||.+.++.+..++. .-.|.|.-       .+.+.+++|...|..
T Consensus       627 v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr~  690 (702)
T PRK11092        627 AEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIRV  690 (702)
T ss_pred             EEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence            4778999999999999999999999999999987766544 33344432       234677877777554

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=95.05  E-value=0.097  Score=54.17  Aligned_cols=63  Identities=19%  Similarity=0.288  Sum_probs=46.8

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC--CeeeeEEEEEeCCCCCChH-HHHHHHHHHHH
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSS-LSQVLVNCLRY  255 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g--~~a~d~F~v~d~G~~l~~~-~~~~L~~~L~~  255 (267)
                      .+.|.|.+.||+|||++|+.+|++.++||..+.+.+..  +.+.-.|.|.     +.+- .+..|.+.|+.
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~L~~  731 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-----IYNLQVLGRVLGKLNQ  731 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-----ECCHHHHHHHHHHHhc
Confidence            46899999999999999999999999999999987753  4455555552     2222 45566655543

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=95.01  E-value=0.17  Score=35.99  Aligned_cols=60  Identities=15%  Similarity=0.218  Sum_probs=41.3

Q ss_pred             EEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           77 QLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        77 ~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      .|.-+||||-|..++.+|.. |.||..-.-...+.+....++.-..      .+++..+.+.+.|.+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV------PDREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence            57789999999999999999 9999987665444333333433332      134667777777654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.96  E-value=0.16  Score=52.69  Aligned_cols=63  Identities=17%  Similarity=0.186  Sum_probs=48.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-Cee-EEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~-~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      ..|.|.+.||+|||.+|+.+|+++++||...++.+.. ++. .-.|.|.-       .+...+++|...|..
T Consensus       667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~~  731 (743)
T PRK10872        667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLNQ  731 (743)
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHhc
Confidence            4788999999999999999999999999999998764 433 33455432       234677878777654

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=94.93  E-value=0.17  Score=52.24  Aligned_cols=62  Identities=11%  Similarity=0.165  Sum_probs=46.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCC-eeeeEEEEEeCCCCCChH-HHHHHHHHHH
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVSYGGAALNSS-LSQVLVNCLR  254 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~-~a~d~F~v~d~G~~l~~~-~~~~L~~~L~  254 (267)
                      .+.|.|.+.||+|+|++|+.+|++.++||.++.+.+.++ .+.-.|.+.     +.+- .++.|...|+
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie-----V~~~~~L~~i~~~Lr  689 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT-----ARDRVHLANIMRKIR  689 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence            568999999999999999999999999999999887653 344444442     1222 4555555554

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=94.89  E-value=0.046  Score=40.35  Aligned_cols=67  Identities=15%  Similarity=0.121  Sum_probs=48.7

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeE--EEEEeCCCCCChH-HHHHHHHHHHHHc
Q 024465          191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDK--FHVSYGGAALNSS-LSQVLVNCLRYYL  257 (267)
Q Consensus       191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~--F~v~d~G~~l~~~-~~~~L~~~L~~~l  257 (267)
                      +|+++.-||-.++|+|-+|+..|+.|-+|+|.-+  +++.-.+  |.+.+.+..++.. ..+++...+.+.|
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999432  4443333  3334455556654 5677777666554

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.72  E-value=0.067  Score=51.64  Aligned_cols=61  Identities=20%  Similarity=0.302  Sum_probs=49.3

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHH
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLV  250 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~  250 (267)
                      ....|-+.-.|+||.++.|+.+|+++|+||...++...|+.|.-+|.+  ++ +++++.+++|+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~--D~-~~~~~~~~~i~  397 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV--DA-DYAEEALDALK  397 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe--CC-CCcHHHHHHHH
Confidence            457788899999999999999999999999999999999777776655  44 55555555555

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=94.68  E-value=0.076  Score=39.20  Aligned_cols=70  Identities=19%  Similarity=0.186  Sum_probs=46.5

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-e-EEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-K-QTKFFITRLDTGRKVEDPDLLERIRLTIINNL  145 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~-~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L  145 (267)
                      |.+.++-||..|+|++-+|..++.-|++|.|.....+ . -..|.+.-.+.+..+......+++...+...|
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999654432 2 12233332212333444445566666655544

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=94.59  E-value=0.12  Score=36.63  Aligned_cols=56  Identities=13%  Similarity=0.221  Sum_probs=38.0

Q ss_pred             CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           82 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        82 DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      |+||.|.+++++|...|+||.+-.+....+.-.-.+.+.-  +|.    ++..+.|.+.|..
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v--~~~----~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV--SGD----DREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE--ES-----CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE--eeC----chhHHHHHHHHhc
Confidence            7899999999999999999999999885554433344443  232    2355666666544

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.47  E-value=0.61  Score=33.52  Aligned_cols=63  Identities=16%  Similarity=0.288  Sum_probs=41.5

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTII  142 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~  142 (267)
                      +.+..+|+||-|+++...|.++|+|+.+-.-.-... ...-.|+|.-  +|..  ++...+.+...|.
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~--~~~~--~~~~~~~~l~~l~   65 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF--EGHI--DDPDVKEALEELK   65 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ECCC--CCHHHHHHHHHHH
Confidence            345568999999999999999999999885544433 2334577765  3431  1234444444443

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=94.45  E-value=0.21  Score=45.95  Aligned_cols=55  Identities=15%  Similarity=0.266  Sum_probs=45.6

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCCC
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALN  242 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l~  242 (267)
                      .|.|-+..+|+||.|+++-.+|+.+|||+++.+....+.. ..=.|||.-.|..=+
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~  249 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDD  249 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCc
Confidence            7888888899999999999999999999999999766655 555777743777644

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=94.42  E-value=0.26  Score=50.68  Aligned_cols=62  Identities=19%  Similarity=0.225  Sum_probs=45.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC-CeeeeEEEEEeCCCCCChH-HHHHHHHHHH
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSS-LSQVLVNCLR  254 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~~a~d~F~v~d~G~~l~~~-~~~~L~~~L~  254 (267)
                      .+.|.|.+.||+|+|++|+.++++.++||.++.+.+.. +.+.-.|-|.     +.+- .+..|...|.
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie-----V~~~~~L~~ii~~L~  673 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE-----IKNYKHLLKIMLKIK  673 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence            56899999999999999999999999999999998764 3333333331     1222 4555555554

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=94.37  E-value=0.15  Score=40.79  Aligned_cols=53  Identities=11%  Similarity=0.089  Sum_probs=42.4

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCC
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAA  240 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~  240 (267)
                      .+.|-+...|+||-|++|-..|+++|||+.+.+.-..+.. -.=.|||.-.|..
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~   94 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHR   94 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCH
Confidence            4677777799999999999999999999999998777555 3446777536653

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=94.35  E-value=0.36  Score=49.71  Aligned_cols=64  Identities=19%  Similarity=0.202  Sum_probs=48.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeE-EEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~-d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      .+.|.|.+.||+|+|.+|+.+|+.++.||.+.++.+..++.. -.|.|.-       .+.+.+++|...|..
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~~  674 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIKT  674 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence            347889999999999999999999999999999987754443 3344432       234677777777543

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=93.81  E-value=0.41  Score=49.22  Aligned_cols=76  Identities=17%  Similarity=0.182  Sum_probs=52.7

Q ss_pred             CEEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEE-EEEEEeCCCCCCCCChHHHHH
Q 024465           61 PHVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQT-KFFITRLDTGRKVEDPDLLER  136 (267)
Q Consensus        61 p~V~i~~~~~---~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d-~F~I~~~~~g~~l~~~~~~er  136 (267)
                      ..|.+.+..+   .--..|.|.+.||+|||.+++.+|+.++.||......+..+.... .|.|.       +.+...+.+
T Consensus       612 r~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~-------v~n~~~L~~  684 (701)
T COG0317         612 RVIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE-------VKNLNHLGR  684 (701)
T ss_pred             eEEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE-------ECcHHHHHH
Confidence            3455554433   233478999999999999999999999999999999887444432 23332       223466777


Q ss_pred             HHHHHHH
Q 024465          137 IRLTIIN  143 (267)
Q Consensus       137 l~~~L~~  143 (267)
                      |...|.+
T Consensus       685 i~~~l~~  691 (701)
T COG0317         685 VLARLKQ  691 (701)
T ss_pred             HHHHHhc
Confidence            7776543

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=93.59  E-value=0.25  Score=35.09  Aligned_cols=47  Identities=15%  Similarity=0.183  Sum_probs=36.1

Q ss_pred             CCCeEEEEEEeC----CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe
Q 024465           70 NSDATIVQLSFG----DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  121 (267)
Q Consensus        70 ~~~~t~V~V~~~----DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~  121 (267)
                      +.++..|+|.+.    |.||.++++...|++.|++|+...     ...-+.+.|..
T Consensus         3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is-----S~~~~~ilV~~   53 (65)
T PF13840_consen    3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS-----SEISISILVKE   53 (65)
T ss_dssp             ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE-----ESSEEEEEEEG
T ss_pred             cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE-----EeeeEEEEEeH
Confidence            356788999988    799999999999999999998766     22334566654

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=93.37  E-value=1.5  Score=33.42  Aligned_cols=73  Identities=15%  Similarity=0.284  Sum_probs=48.2

Q ss_pred             cCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465           68 DSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNL  145 (267)
Q Consensus        68 ~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L  145 (267)
                      +..++.+-+.+..+|+||-|+++...|.+.|+|+.+-.-.-..... .-.|||.-  +|. . + ..+..+...|.+.|
T Consensus         9 ~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~-~-~-~~~~~~l~~L~~~~   82 (90)
T cd04931           9 SNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK-S-A-PALDPIIKSLRNDI   82 (90)
T ss_pred             cCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC-C-C-HHHHHHHHHHHHHh
Confidence            3344556677777999999999999999999999876665543322 34588865  454 1 2 34444445544444

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=93.29  E-value=0.48  Score=45.55  Aligned_cols=54  Identities=17%  Similarity=0.191  Sum_probs=43.9

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCC
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAAL  241 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l  241 (267)
                      .+.|-+...|+||.|+++-..|+.+|||+.+.+.-..+++ -.=.|||.-.|..-
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~  351 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLR  351 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCC
Confidence            6667777789999999999999999999999999765544 66678884477543

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=93.22  E-value=0.29  Score=41.75  Aligned_cols=45  Identities=11%  Similarity=0.158  Sum_probs=38.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEE
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI  119 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I  119 (267)
                      -+.|.+.++||.|.++++.+++.|.||..|+.+..+++-....|.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYm   48 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYM   48 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEE
Confidence            467889999999999999999999999999999999875433343

>PRK08210 aspartate kinase I; Reviewed

Probab=93.18  E-value=5.2  Score=38.27  Aligned_cols=100  Identities=17%  Similarity=0.271  Sum_probs=66.0

Q ss_pred             CCeEEEEEEeCCC-ccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccC
Q 024465           71 SDATIVQLSFGDR-LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH  149 (267)
Q Consensus        71 ~~~t~V~V~~~DR-pGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~  149 (267)
                      ++...|+|...+. ||.+++|...|.+.|+||..-..+.  ..  -.|.+..          +..+++.+.|.+ + +  
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~~--is~~v~~----------~~~~~a~~~l~~-~-~--  330 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--TE--VVFTVSD----------EDSEKAKEILEN-L-G--  330 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--ce--EEEEEcH----------HHHHHHHHHHHH-h-C--
Confidence            4667888876555 9999999999999999999875442  21  2344432          223334333322 1 0  


Q ss_pred             CCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEE
Q 024465          150 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVES  218 (267)
Q Consensus       150 ~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~  218 (267)
                      .                           .+.+.+   +...|.+.+.   ++||+++++.++|.+.|++|..
T Consensus       331 ~---------------------------~v~~~~---~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        331 L---------------------------KPSVRE---NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             C---------------------------cEEEeC---CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            0                           011212   3566666665   7899999999999999999964

>PLN02551 aspartokinase

Probab=93.03  E-value=5.3  Score=39.97  Aligned_cols=123  Identities=15%  Similarity=0.228  Sum_probs=75.4

Q ss_pred             CCCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           70 NSDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        70 ~~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      .++.+.|+|.+.   +.+|.++++...|.++|++|..-.  +..  .--.|.+... +   +   ...+.+++.+...+.
T Consensus       363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe--~sIs~~v~~~-~---~---~~~~~i~~~l~~l~~  431 (521)
T PLN02551        363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSE--VSISLTLDPS-K---L---WSRELIQQELDHLVE  431 (521)
T ss_pred             CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccC--CEEEEEEehh-H---h---hhhhhHHHHHHHHHH
Confidence            457788898765   689999999999999999998763  222  2234666542 1   1   112334444333221


Q ss_pred             ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC--CcccHHHHHHHHHHhCCccEEEEEEEec
Q 024465          147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTE  224 (267)
Q Consensus       147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~--DRpGLL~~Itr~l~~~gl~I~~a~i~T~  224 (267)
                      .        +.           +      ...|.+.+   +..+|.|.+.  .+||+++++.++|+++|++|....   .
T Consensus       432 e--------l~-----------~------~~~V~v~~---~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs---q  480 (521)
T PLN02551        432 E--------LE-----------K------IAVVNLLQ---GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS---Q  480 (521)
T ss_pred             H--------hh-----------c------CCeEEEeC---CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE---e
Confidence            1        00           0      01122222   3566666654  689999999999999999998776   3


Q ss_pred             CCeeeeE-EEE
Q 024465          225 GLVAKDK-FHV  234 (267)
Q Consensus       225 g~~a~d~-F~v  234 (267)
                      |....+. |.|
T Consensus       481 gaSeinIS~vV  491 (521)
T PLN02551        481 GASKVNISLIV  491 (521)
T ss_pred             cCCCcEEEEEE
Confidence            4344443 555

>PRK09181 aspartate kinase; Validated

Probab=92.91  E-value=7.8  Score=38.30  Aligned_cols=105  Identities=11%  Similarity=0.173  Sum_probs=68.5

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465           71 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  147 (267)
Q Consensus        71 ~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~  147 (267)
                      ++.+.|+|.+.   +.+|++.++...|.+.|++|..  +.+...  --.|.|..  +      .++++++.+.|...+..
T Consensus       327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~--i~ss~~--sis~~v~~--~------~~~~~~~~~~L~~~~~~  394 (475)
T PRK09181        327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYIS--KATNAN--TITHYLWG--S------LKTLKRVIAELEKRYPN  394 (475)
T ss_pred             CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEE--EEecCc--EEEEEEcC--C------hHHHHHHHHHHHHhcCC
Confidence            47788888654   7899999999999999999983  333322  22355543  1      12344444443322210


Q ss_pred             cCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCC--cccHHHHHHHHHHhCCccEEEEE
Q 024465          148 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD--RPGLLVEIMKIIADVNVDVESAE  220 (267)
Q Consensus       148 ~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~D--RpGLL~~Itr~l~~~gl~I~~a~  220 (267)
                                                   ..  +. . .+..+|.+.+..  +||+.+++..+|++.|+||....
T Consensus       395 -----------------------------~~--i~-~-~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~  436 (475)
T PRK09181        395 -----------------------------AE--VT-V-RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH  436 (475)
T ss_pred             -----------------------------ce--EE-E-CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence                                         01  11 1 245667776654  89999999999999999997765

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=92.83  E-value=0.65  Score=37.48  Aligned_cols=40  Identities=15%  Similarity=0.159  Sum_probs=36.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeE
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ  114 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~  114 (267)
                      ++-|...|+||=|++|+.+|.+.++|+-.+..+++....+
T Consensus        71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KA  110 (142)
T COG4747          71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKA  110 (142)
T ss_pred             EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceE
Confidence            6788999999999999999999999999999998877543

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.76  E-value=0.4  Score=34.08  Aligned_cols=59  Identities=12%  Similarity=0.107  Sum_probs=39.6

Q ss_pred             EEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 024465          192 YIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY  255 (267)
Q Consensus       192 ~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~  255 (267)
                      .+.-+||||-|.++++++.+ |.||....-.-.+.....++..-. .+    ....+.|.++|..
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~----~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD----REDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC----HHHHHHHHHHHHH
Confidence            46789999999999999999 999998876554433333333322 32    2355666666653

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=92.76  E-value=0.31  Score=46.59  Aligned_cols=51  Identities=18%  Similarity=0.326  Sum_probs=40.2

Q ss_pred             CeEEEEEEeC-CcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCC
Q 024465          187 KRSLLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG  238 (267)
Q Consensus       187 ~~t~l~i~~~-DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G  238 (267)
                      ..+.|.+.-+ |+||.|++|+.+|+++||||.+.++ .....-.-.|++.-.+
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~~  345 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFEP  345 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEec
Confidence            4677777776 9999999999999999999999999 4443344448886444

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=92.60  E-value=0.73  Score=47.43  Aligned_cols=41  Identities=20%  Similarity=0.298  Sum_probs=36.6

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCee
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVA  228 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a  228 (267)
                      .+.|.|.+.||+|||++|+++|+..++||......+.+.+.
T Consensus       627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~  667 (701)
T COG0317         627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQF  667 (701)
T ss_pred             EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCce
Confidence            66899999999999999999999999999999988764443

>PRK06382 threonine dehydratase; Provisional

Probab=92.37  E-value=0.36  Score=46.40  Aligned_cols=35  Identities=31%  Similarity=0.377  Sum_probs=32.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID  222 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~  222 (267)
                      .+.+.|.-+|+||-|.+|+++|.++|+||.+....
T Consensus       330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~  364 (406)
T PRK06382        330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD  364 (406)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence            67899999999999999999999999999988764

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=92.15  E-value=11  Score=39.80  Aligned_cols=114  Identities=11%  Similarity=0.211  Sum_probs=71.9

Q ss_pred             CCCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           70 NSDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        70 ~~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      .++.+.|+|.+.   .+||.+.++...|.+.|++|......+..  .--.|.|..          +..++..+.|.+.+.
T Consensus       312 ~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~----------~d~~~av~~L~~~f~  379 (819)
T PRK09436        312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQ----------SDAAKAKRALEEEFA  379 (819)
T ss_pred             eCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeH----------HHHHHHHHHHHHHHH
Confidence            357788999865   68999999999999999999766544322  222355543          122333333333231


Q ss_pred             ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEEE
Q 024465          147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  220 (267)
Q Consensus       147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~  220 (267)
                      .       .+.    .     .      ....|.+.   .+...|.+.+.   ++||+++++..+|.+.|++|....
T Consensus       380 ~-------el~----~-----~------~~~~i~~~---~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        380 L-------ELK----E-----G------LLEPLEVE---ENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             H-------Hhc----c-----C------CcceEEEe---CCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence            1       000    0     0      00012222   24677777776   789999999999999999998775

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=91.98  E-value=1.5  Score=32.58  Aligned_cols=61  Identities=7%  Similarity=0.096  Sum_probs=38.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEE-EEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQT-KFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d-~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      ++.|.-+|+||-|.+++.+|.  +.||.+..-.....+... .+.+.-. +|     ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-~~-----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-NG-----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-Cc-----HHHHHHHHHHHHH
Confidence            578889999999999999999  666664444333222222 2334332 11     3566777777554

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=91.74  E-value=0.55  Score=40.10  Aligned_cols=45  Identities=24%  Similarity=0.228  Sum_probs=36.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCC--eeeeEEEE
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--VAKDKFHV  234 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~--~a~d~F~v  234 (267)
                      -|.+.+.++||.|.++|-++++.|.||+.++-...++  .+.-.|.+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi   50 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI   50 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence            3678899999999999999999999999999766654  44444444

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=91.49  E-value=0.13  Score=38.59  Aligned_cols=32  Identities=22%  Similarity=0.198  Sum_probs=29.0

Q ss_pred             EEEEEeCC-CccHHHHHHHHHHHCCceEEEEEE
Q 024465           75 IVQLSFGD-RLGALIDTMNALKDLGLDVAKGTV  106 (267)
Q Consensus        75 ~V~V~~~D-RpGLL~di~~~L~~~~lnI~~A~I  106 (267)
                      +|+|.++| ..|.+++++.+|+++|+||.+-+-
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~   33 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR   33 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence            48999999 999999999999999999976544

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=91.24  E-value=0.16  Score=38.12  Aligned_cols=31  Identities=10%  Similarity=0.254  Sum_probs=27.7

Q ss_pred             EEEEeCC-cccHHHHHHHHHHhCCccEEEEEE
Q 024465          191 LYIETAD-RPGLLVEIMKIIADVNVDVESAEI  221 (267)
Q Consensus       191 l~i~~~D-RpGLL~~Itr~l~~~gl~I~~a~i  221 (267)
                      +.+.+.| ++|+++.|+++|+++|+||.+.+-
T Consensus         2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~   33 (84)
T cd04871           2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR   33 (84)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence            6788999 999999999999999999976553

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=91.23  E-value=0.57  Score=46.69  Aligned_cols=62  Identities=16%  Similarity=0.335  Sum_probs=45.9

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHH
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVN  251 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v~d~G~~l~~~~~~~L~~  251 (267)
                      ++..|-+...|+||.+..|+.+|.++|+||...++.-.  |+.+.-++.+   ..+++++.+++|++
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~---D~~v~~~~l~~i~~  514 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV---DDPVPEEVLEELRA  514 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC---CCCCCHHHHHHHhc
Confidence            35556667799999999999999999999999998653  4455544444   55666766666654

>TIGR00657 asp_kinases aspartate kinase

Probab=91.20  E-value=9.5  Score=37.00  Aligned_cols=109  Identities=16%  Similarity=0.207  Sum_probs=66.7

Q ss_pred             CCeEEEEEEeCCC--ccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhcc
Q 024465           71 SDATIVQLSFGDR--LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY  148 (267)
Q Consensus        71 ~~~t~V~V~~~DR--pGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~  148 (267)
                      ++...|+|.+.+-  +|.+.++...|.+.|++|......+....  -.|.|...          ..++..+.|.......
T Consensus       300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~s--Is~~I~~~----------~~~~a~~~L~~~~~~~  367 (441)
T TIGR00657       300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETS--ISFTVDKE----------DADQAKTLLKSELNLS  367 (441)
T ss_pred             CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCce--EEEEEEHH----------HHHHHHHHHHHHHHhc
Confidence            4667788875433  79999999999999999987653232211  23555431          1222222222211100


Q ss_pred             CCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEe---CCcccHHHHHHHHHHhCCccEEEEE
Q 024465          149 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE  220 (267)
Q Consensus       149 ~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~---~DRpGLL~~Itr~l~~~gl~I~~a~  220 (267)
                       .                         ...|.+.+   +...+.+.+   .++||++++|.++|++.|++|....
T Consensus       368 -~-------------------------~~~I~~~~---~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       368 -A-------------------------LSSVEVEK---GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             -C-------------------------cceEEEcC---CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence             0                         01122222   466777754   4789999999999999999997775

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=90.96  E-value=0.46  Score=47.35  Aligned_cols=62  Identities=13%  Similarity=0.277  Sum_probs=45.8

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHH
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVN  251 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v~d~G~~l~~~~~~~L~~  251 (267)
                      ++..|-+.-.||||.+..|+.+|.++++||...++.-.  |+.+.-++.+   ..+++++.+++|++
T Consensus       450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~---D~~v~~~~l~~i~~  513 (525)
T TIGR01327       450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL---DQPVPDEVLEEIKA  513 (525)
T ss_pred             CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc---CCCCCHHHHHHHhc
Confidence            34556667799999999999999999999999988643  4555544444   45777776666654

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=90.78  E-value=1.8  Score=37.88  Aligned_cols=43  Identities=12%  Similarity=0.262  Sum_probs=37.0

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe
Q 024465           70 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV  112 (267)
Q Consensus        70 ~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~  112 (267)
                      ...+..+.+.-.|+||.+..+..+|.++|+||-..++.....+
T Consensus       145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g  187 (208)
T TIGR00719       145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIG  187 (208)
T ss_pred             cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCC
Confidence            3455677788899999999999999999999999999887643

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK09034 aspartate kinase; Reviewed

Probab=90.66  E-value=18  Score=35.43  Aligned_cols=113  Identities=15%  Similarity=0.283  Sum_probs=69.6

Q ss_pred             CCCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           70 NSDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        70 ~~~~t~V~V~~---~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      .++.+.|+|.+   .+++|.++++...|.++|++|..-  .  .+..--.|.|... +   +. ...+..+...|...+.
T Consensus       305 ~~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~--ss~~sis~~v~~~-~---~~-~a~~~~l~~el~~~~~  375 (454)
T PRK09034        305 DKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P--SGIDDLSIIIRER-Q---LT-PKKEDEILAEIKQELN  375 (454)
T ss_pred             cCCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c--CCCcEEEEEEeHH-H---hh-HHHHHHHHHHHHHhhC
Confidence            34667888874   678999999999999999999875  2  2222234666542 1   10 0011223222221110


Q ss_pred             ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEEEEEe
Q 024465          147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT  223 (267)
Q Consensus       147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~i~T  223 (267)
                         .                          ..|.+.+   +-..|.+.+.   ++||+++++..+|+++|++|....-.+
T Consensus       376 ---~--------------------------~~I~~~~---~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        376 ---P--------------------------DELEIEH---DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             ---C--------------------------ceEEEeC---CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence               0                          0111222   3667777543   789999999999999999998875433

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=90.26  E-value=2.7  Score=30.37  Aligned_cols=46  Identities=15%  Similarity=0.383  Sum_probs=34.6

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEe
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITR  121 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~  121 (267)
                      +.+..+|+||-|+++...|...|+|+.+-.-....... .-.|||.-
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            44555899999999999999999999876655444322 34577865

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK06545 prephenate dehydrogenase; Validated

Probab=90.26  E-value=0.62  Score=44.00  Aligned_cols=49  Identities=18%  Similarity=0.407  Sum_probs=39.8

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465          186 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  234 (267)
Q Consensus       186 s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v  234 (267)
                      +..+.|.|.-+||||-|++|+..|.+.|+||++.+|.-.-+...-++.+
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~  336 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQI  336 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEE
Confidence            3578999999999999999999999999999999995544444444444

>PRK07431 aspartate kinase; Provisional

Probab=90.24  E-value=22  Score=35.83  Aligned_cols=137  Identities=15%  Similarity=0.216  Sum_probs=82.6

Q ss_pred             CCCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcCC--eeEE-EEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465           70 NSDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQT-KFFITRLDTGRKVEDPDLLERIRLTIINNL  145 (267)
Q Consensus        70 ~~~~t~V~V~-~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~--~~~d-~F~I~~~~~g~~l~~~~~~erl~~~L~~~L  145 (267)
                      .++...|+|. ..+.+|+++++...|.++|++|..-......+  +..+ .|.+..          +.+.++...+++ |
T Consensus       436 ~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----------~~~~~~~~~l~~-l  504 (587)
T PRK07431        436 DRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----------EDREAAQKVLRE-L  504 (587)
T ss_pred             cCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH----------HHHHHHHHHHHH-H
Confidence            4566777765 67889999999999999999998765532222  2222 244432          222333333333 2


Q ss_pred             hccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEEEEE
Q 024465          146 LKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEID  222 (267)
Q Consensus       146 ~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~i~  222 (267)
                      ....+.                         ..+.+.   .+...+.+.+.   .+||+++++.++|.+.|++|....  
T Consensus       505 ~~~~~~-------------------------~~i~~~---~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--  554 (587)
T PRK07431        505 AKQLPG-------------------------AEVEDG---PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--  554 (587)
T ss_pred             HHhcCC-------------------------ceEEEe---CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--
Confidence            210000                         011122   24677888776   889999999999999999996655  


Q ss_pred             ecCCeeee-EEEEEeCCCCCChHHHHHHHHHHHHHc
Q 024465          223 TEGLVAKD-KFHVSYGGAALNSSLSQVLVNCLRYYL  257 (267)
Q Consensus       223 T~g~~a~d-~F~v~d~G~~l~~~~~~~L~~~L~~~l  257 (267)
                      |   ...+ .|.|.       ....+...++|+..+
T Consensus       555 ~---S~~~Is~vV~-------~~~~~~av~~Lh~~f  580 (587)
T PRK07431        555 T---SEIRTSCVVA-------EDDGVKALQAVHQAF  580 (587)
T ss_pred             c---cceEEEEEEe-------HHHHHHHHHHHHHHh
Confidence            2   3333 35552       224455566777666

>PRK11898 prephenate dehydratase; Provisional

Probab=89.76  E-value=1.9  Score=39.62  Aligned_cols=67  Identities=15%  Similarity=0.166  Sum_probs=46.9

Q ss_pred             eEEEEEEeCC-cccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465          188 RSLLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY  255 (267)
Q Consensus       188 ~t~l~i~~~D-RpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l~~~~~~~L~~~L~~  255 (267)
                      .+.|-+...+ +||.|+++-.+|+++|+|+.+.+.....++ -.=.|||.-+|.. .++..+++.+.|..
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~-~~~~~~~al~~L~~  264 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHI-DDVLVAEALKELEA  264 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccC-CCHHHHHHHHHHHH
Confidence            4556666655 699999999999999999999998766544 5557888547754 44433444444443

>PRK08198 threonine dehydratase; Provisional

Probab=89.63  E-value=3.7  Score=39.29  Aligned_cols=67  Identities=15%  Similarity=0.175  Sum_probs=46.3

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc----CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE----GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~----~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      .....+.|.-+|+||-|.+++..|.+.|.||.+-.....    +.+.....+.-+.      .+++..+.|.+.|++
T Consensus       325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~l~~~L~~  395 (404)
T PRK08198        325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET------RGPEHIEEILDALRD  395 (404)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence            445689999999999999999999999999998876542    2233333332221      134566667776544

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=89.49  E-value=0.71  Score=32.72  Aligned_cols=42  Identities=14%  Similarity=0.248  Sum_probs=31.8

Q ss_pred             eEEEEEEeC----CcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465          188 RSLLYIETA----DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  234 (267)
Q Consensus       188 ~t~l~i~~~----DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v  234 (267)
                      ...|.|.+.    |.||+++.+++.|+++|++|....  |   .-.+.|.|
T Consensus         6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV   51 (65)
T PF13840_consen    6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILV   51 (65)
T ss_dssp             EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEE
T ss_pred             EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEE
Confidence            556777776    799999999999999999997766  2   23455656

>PLN02317 arogenate dehydratase

Probab=89.34  E-value=2.6  Score=40.51  Aligned_cols=67  Identities=13%  Similarity=0.223  Sum_probs=48.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe---------------eeeEEEEEeCCCCCChHHHHHHHHH
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV---------------AKDKFHVSYGGAALNSSLSQVLVNC  252 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~---------------a~d~F~v~d~G~~l~~~~~~~L~~~  252 (267)
                      .|.|-+.-.|+||.|+++-.+|+.+|||+.+.+......+               -.=.|||.-+|.. .++..++..+.
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~-~d~~~~~aL~~  361 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM-ADPRAQNALAH  361 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCc-CCHHHHHHHHH
Confidence            4677777789999999999999999999999998765544               2337888547754 34433444444


Q ss_pred             HHH
Q 024465          253 LRY  255 (267)
Q Consensus       253 L~~  255 (267)
                      |..
T Consensus       362 L~~  364 (382)
T PLN02317        362 LQE  364 (382)
T ss_pred             HHH
Confidence            443

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=89.08  E-value=2.4  Score=41.41  Aligned_cols=53  Identities=19%  Similarity=0.329  Sum_probs=42.8

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC-CeeeeEEEEEeCCCC
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAA  240 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~~a~d~F~v~d~G~~  240 (267)
                      .+.|-+...|+||-|++|-++|+++|||+.+.+.-... ..-.=.|||.-.|..
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~   69 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEAS   69 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCc
Confidence            57777788999999999999999999999999986654 334557888646664

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>PRK06382 threonine dehydratase; Provisional

Probab=88.91  E-value=3.1  Score=40.04  Aligned_cols=66  Identities=20%  Similarity=0.257  Sum_probs=45.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE----EcCCe-eEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN----TEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~----T~~~~-~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      ...+.+.|.-+|+||-|.+++.+|.++|.||.+-...    ....+ ..-.|.|...       +++..+.|.+.|++
T Consensus       328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~  398 (406)
T PRK06382        328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE  398 (406)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            5667899999999999999999999999999887664    22222 2334444331       23445566666544

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=88.74  E-value=4.5  Score=29.55  Aligned_cols=46  Identities=17%  Similarity=0.379  Sum_probs=34.8

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-eEEEEEEEe
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITR  121 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~-~~d~F~I~~  121 (267)
                      +.+..+|+||-|+++-..|...|+|+.+-.-...... ..-.|||.-
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~   49 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC   49 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            4445589999999999999999999988666554432 234588865

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=88.60  E-value=2.3  Score=41.76  Aligned_cols=54  Identities=15%  Similarity=0.075  Sum_probs=43.0

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCee-e-eEEEEEeCCCC
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVA-K-DKFHVSYGGAA  240 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a-~-d~F~v~d~G~~  240 (267)
                      ..+.|-+...|+||-|+++-++|+++|||+.+.+........ . =.|||.-.|..
T Consensus        30 ~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~   85 (464)
T TIGR01270        30 QRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFH   85 (464)
T ss_pred             ceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCH
Confidence            467777778999999999999999999999999987665443 3 47888546654

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=88.47  E-value=27  Score=34.35  Aligned_cols=119  Identities=18%  Similarity=0.242  Sum_probs=72.4

Q ss_pred             CCCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           70 NSDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        70 ~~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      .++.+.|+|...   ..+|.++++...|.+.|+||..-........  -.|.+...          ...+..+.|.+.+.
T Consensus       304 ~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~----------~~~~a~~~l~~~~~  371 (447)
T COG0527         304 DDNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPES----------DAPRALRALLEEKL  371 (447)
T ss_pred             CCCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchh----------hHHHHHHHHHHHHh
Confidence            356777777743   3459999999999999999986544433334  34666432          12223333333222


Q ss_pred             ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEEEEEe
Q 024465          147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT  223 (267)
Q Consensus       147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~i~T  223 (267)
                      .. .                       .   ++.++.   +...+.+.+.   ..||..+.+..+|++.|+||....   
T Consensus       372 ~~-~-----------------------~---~v~~~~---~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is---  418 (447)
T COG0527         372 EL-L-----------------------A---EVEVEE---GLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS---  418 (447)
T ss_pred             hh-c-----------------------c---eEEeeC---CeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE---
Confidence            10 0                       0   111222   2445555554   679999999999999999999877   


Q ss_pred             cCCeeeeEEEE
Q 024465          224 EGLVAKDKFHV  234 (267)
Q Consensus       224 ~g~~a~d~F~v  234 (267)
                       -....=.|.|
T Consensus       419 -sSe~~Is~vV  428 (447)
T COG0527         419 -SSEISISFVV  428 (447)
T ss_pred             -cCCceEEEEE
Confidence             2223335666

>PRK06349 homoserine dehydrogenase; Provisional

Probab=88.27  E-value=2.4  Score=41.10  Aligned_cols=50  Identities=26%  Similarity=0.357  Sum_probs=39.7

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  236 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d  236 (267)
                      ..+.|.+...|+||.|++|+.+|.++|++|.+..-....+.....+++++
T Consensus       347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            46788888999999999999999999999998876543334455666665

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=88.22  E-value=1.8  Score=36.66  Aligned_cols=67  Identities=12%  Similarity=0.304  Sum_probs=45.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR  258 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~  258 (267)
                      -.+.+.-.|.||.|+.++..|+..|+||.+..+.-.........-+.-.|   ++...+++.+-|...++
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g---~~~~~EQi~kQL~kLid   71 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG---DEQVLEQIIKQLNKLID   71 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC---CcchHHHHHHHHHhhcc
Confidence            45667788999999999999999999999999855443333322222244   22345666666655554

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=88.10  E-value=1.3  Score=42.75  Aligned_cols=48  Identities=15%  Similarity=0.238  Sum_probs=40.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEE
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI  119 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I  119 (267)
                      +...+.|.-+|+||.++.|+..|.++|+||-.-++.+.++.++-+|-+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~  384 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV  384 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence            566788899999999999999999999999999998888666544433

>PRK14646 hypothetical protein; Provisional

Probab=87.35  E-value=11  Score=31.59  Aligned_cols=60  Identities=12%  Similarity=0.102  Sum_probs=45.0

Q ss_pred             cHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           85 GALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        85 GLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      .+...+..++..+||.+++..+...+...+-..+|... +|..+ +-+.++.+-+.|.+.|.
T Consensus         8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~-~g~gV-tldDC~~vSr~is~~LD   67 (155)
T PRK14646          8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKT-NGDDI-SLDDCALFNTPASEEIE   67 (155)
T ss_pred             HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECC-CCCCc-cHHHHHHHHHHHHHHhC
Confidence            46667888999999999999999988877656666543 44334 34778888888877775

>PRK06545 prephenate dehydrogenase; Validated

Probab=86.71  E-value=3  Score=39.32  Aligned_cols=49  Identities=10%  Similarity=0.079  Sum_probs=40.5

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEE
Q 024465           71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI  119 (267)
Q Consensus        71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I  119 (267)
                      +.+..|.|.-+||||-+++++..|...|+||.+-.|....+...-.+.+
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~  336 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQI  336 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEE
Confidence            4678999999999999999999999999999999997765544333444

>PRK07431 aspartate kinase; Provisional

Probab=86.40  E-value=23  Score=35.66  Aligned_cols=123  Identities=16%  Similarity=0.251  Sum_probs=73.2

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465           71 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  147 (267)
Q Consensus        71 ~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~  147 (267)
                      ++...|.|.+.   +.||++.++..+|.+.|++|..-.  +  ...--.|.|..          +..++..+.|...+..
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~Is~vv~~----------~d~~~av~~Lh~~f~~  411 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKVSCVIDA----------EDGDKALRAVCEAFEL  411 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEEEEEEcH----------HHHHHHHHHHHHHhcc
Confidence            47788999885   899999999999999999997655  2  22222355543          2234444555544522


Q ss_pred             cCCCchhHhhhccccCccCCCcc-cccccceeEEeccCCCCeEEEEE-EeCCcccHHHHHHHHHHhCCccEEEEEE
Q 024465          148 YHPESSEQLAMGEAFGIKAPEKK-LDVDIATHIHVKEDGPKRSLLYI-ETADRPGLLVEIMKIIADVNVDVESAEI  221 (267)
Q Consensus       148 ~~~~~~~~la~~~~~~~~~~~r~-~~~~~~~~V~i~~~~s~~t~l~i-~~~DRpGLL~~Itr~l~~~gl~I~~a~i  221 (267)
                      ...  ...+         .|.+. ..-..-+-|..+.   +...|++ ...+.+|++++|...|.++|++|.....
T Consensus       412 ~~~--~~~~---------~~~~~~~~~~~v~gIa~~~---~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~  473 (587)
T PRK07431        412 EDS--QIEI---------NPTASGQDEPEVRGVALDR---NQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQ  473 (587)
T ss_pred             CCc--cccc---------CccccCCCCCcEEEEEccC---CEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEe
Confidence            100  0000         00000 0001112222222   3445554 3568899999999999999999998854

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=86.21  E-value=2.8  Score=39.70  Aligned_cols=35  Identities=23%  Similarity=0.423  Sum_probs=31.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID  222 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~  222 (267)
                      ...+.|.-+||||.|+++++++++.|.||.+..-.
T Consensus       305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~  339 (380)
T TIGR01127       305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHD  339 (380)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence            45899999999999999999999999999988543

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK11899 prephenate dehydratase; Provisional

Probab=86.13  E-value=15  Score=33.71  Aligned_cols=52  Identities=17%  Similarity=0.243  Sum_probs=39.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCC
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGR  126 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~  126 (267)
                      -|.+.+..+|+||.|+++...|++.|+|...-.-.-.++.. .-.|||.-  +|.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~  246 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGH  246 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECC
Confidence            46666667899999999999999999999876665554432 34688876  565

>PRK09224 threonine dehydratase; Reviewed

Probab=86.03  E-value=39  Score=33.63  Aligned_cols=129  Identities=13%  Similarity=0.197  Sum_probs=75.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCC
Q 024465           71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP  150 (267)
Q Consensus        71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~  150 (267)
                      .....+.|.-+||||-|..++..|.  +.||..-.-...+.....+|+.-.. .+.    +.+.+.|.+.|++.  ++..
T Consensus       326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~-~~~----~~~~~~i~~~L~~~--gy~~  396 (504)
T PRK09224        326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQL-SRG----QEERAEIIAQLRAH--GYPV  396 (504)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEe-CCh----hhHHHHHHHHHHHc--CCCe
Confidence            4567889999999999999999998  5777765544444444455554432 121    23477788886541  2110


Q ss_pred             C--chhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE
Q 024465          151 E--SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID  222 (267)
Q Consensus       151 ~--~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~  222 (267)
                      .  ....+++.          ...+.+.-+   .....+-..+.+.-+.|||-|.+...+|. -+-||+..+-.
T Consensus       397 ~~ls~ne~~k~----------h~r~~~g~~---~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr  456 (504)
T PRK09224        397 VDLSDDELAKL----------HVRYMVGGR---PPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR  456 (504)
T ss_pred             EECCCCHHHHH----------HHHhccCCC---CCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence            0  00111100          000000000   00011244577889999999999999777 77899888874

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=86.03  E-value=4  Score=30.26  Aligned_cols=61  Identities=18%  Similarity=0.190  Sum_probs=35.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY  255 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~  255 (267)
                      ++.+.-+||||-|.+++++|.  +.||....-.-.+ +.+.-.+.+.-.+.   .+..+.+.+.|..
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~---~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG---AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc---HHHHHHHHHHHHH
Confidence            466788999999999999999  5566544433222 33333333332331   2244555555543

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=85.72  E-value=7.8  Score=36.71  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=30.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN  107 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~  107 (267)
                      ..+.|.-+||||.|.+++..+.+.|.||.+-...
T Consensus       306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~  339 (380)
T TIGR01127       306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHD  339 (380)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence            4889999999999999999999999999987554

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK14634 hypothetical protein; Provisional

Probab=84.00  E-value=15  Score=30.74  Aligned_cols=61  Identities=16%  Similarity=0.015  Sum_probs=44.9

Q ss_pred             ccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           84 LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        84 pGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      ..+...+..++..+|+.+++..+...+...+-..+|... +|..+ +=+.++.+-+.|...|.
T Consensus         7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~-~g~~v-~lddC~~vSr~is~~LD   67 (155)
T PRK14634          7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRS-SGSDV-SLDDCAGFSGPMGEALE   67 (155)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECC-CCCcc-cHHHHHHHHHHHHHHhc
Confidence            345666778899999999999999888776556666553 66334 24678888888877775

>PRK14636 hypothetical protein; Provisional

Probab=83.77  E-value=16  Score=31.34  Aligned_cols=63  Identities=14%  Similarity=0.052  Sum_probs=45.5

Q ss_pred             CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           82 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        82 DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      |.+.+...+..++..+|+.+++..+...+...+-..+|... +|..+ +=+.++++-+.|...|.
T Consensus         3 ~~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~-~~ggV-~lDDC~~vSr~Is~~LD   65 (176)
T PRK14636          3 DIAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERP-DTRQL-VIEDCAALSRRLSDVFD   65 (176)
T ss_pred             hHHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECC-CCCCc-CHHHHHHHHHHHHHHhc
Confidence            34456677888999999999999998887666555666543 33334 34788888888888775

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=83.65  E-value=1.4  Score=43.76  Aligned_cols=36  Identities=31%  Similarity=0.449  Sum_probs=33.6

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  225 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g  225 (267)
                      .|+|.|.||.|+..+|..+|..+++++...+|...|
T Consensus         2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~   37 (520)
T PRK10820          2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG   37 (520)
T ss_pred             eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence            589999999999999999999999999999997764

>PRK14640 hypothetical protein; Provisional

Probab=83.61  E-value=17  Score=30.35  Aligned_cols=58  Identities=10%  Similarity=0.026  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465           86 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  147 (267)
Q Consensus        86 LL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~  147 (267)
                      +...+..++..+|+.+++..+...+....-..+|... +|  + +-+.++.+-+.|..+|..
T Consensus         8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~-~g--v-~lddC~~vSr~is~~LD~   65 (152)
T PRK14640          8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGE-NG--V-SVENCAEVSHQVGAIMDV   65 (152)
T ss_pred             HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECC-CC--C-CHHHHHHHHHHHHHHhcc
Confidence            4556778899999999999999888766556666543 55  3 347888888888887753

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=83.38  E-value=10  Score=30.22  Aligned_cols=49  Identities=4%  Similarity=0.114  Sum_probs=36.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEe
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITR  121 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~  121 (267)
                      -+-+.+..+|+||-|+++...|..+|+|+.+-.-...+... .-.|||.-
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi   90 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC   90 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence            35556666999999999999999999999886665553322 23577764

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08198 threonine dehydratase; Provisional

Probab=82.78  E-value=7.9  Score=37.04  Aligned_cols=35  Identities=31%  Similarity=0.532  Sum_probs=32.2

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID  222 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~  222 (267)
                      ...+.|.-+|+||-|+++..++.+.|.||......
T Consensus       327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            56899999999999999999999999999988764

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=82.77  E-value=11  Score=27.33  Aligned_cols=57  Identities=14%  Similarity=0.194  Sum_probs=38.1

Q ss_pred             eCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465          195 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  255 (267)
Q Consensus       195 ~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~  255 (267)
                      ..+.||++++|..+|+++|++|...-  + +. ..-.|-+.....-+.++..++|.++|..
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~~~~~~~~~~~l~~el~~   67 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDPNGLDPDVLDALLDDLNQ   67 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcccccchHHHHHHHHHHHh
Confidence            35779999999999999999999884  2 33 2234555433211444455677777665

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02550 threonine dehydratase

Probab=82.13  E-value=63  Score=32.99  Aligned_cols=153  Identities=8%  Similarity=0.090  Sum_probs=84.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCC-
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP-  150 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~-  150 (267)
                      ....+.|.-+||||-|.+++.+|...  ||.+-.-.....+....++.-..      .+++..+.|.+.|++.  +... 
T Consensus       416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~l~~~--g~~~~  485 (591)
T PLN02550        416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV------HTEQELQALKKRMESA--QLRTV  485 (591)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe------CCHHHHHHHHHHHHHC--CCCeE
Confidence            34678999999999999999999986  77765554433333333443332      1356778888886652  1110 


Q ss_pred             Cc-hhHhhhccccCccCCCcccccc-cceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCee
Q 024465          151 ES-SEQLAMGEAFGIKAPEKKLDVD-IATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVA  228 (267)
Q Consensus       151 ~~-~~~la~~~~~~~~~~~r~~~~~-~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a  228 (267)
                      +. ...+++.         +.+.+. ...+  +    ..--.+.+.-+.|||-|.++..+|.. +-||+..+-...|+..
T Consensus       486 ~l~~~~~~~~---------~LR~v~g~ra~--~----~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~YR~~~~~~  549 (591)
T PLN02550        486 NLTSNDLVKD---------HLRYLMGGRAI--V----KDELLYRFVFPERPGALMKFLDAFSP-RWNISLFHYRGQGETG  549 (591)
T ss_pred             eCCCChHHhh---------hhhheeccccc--c----CceEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEeecCCCCC
Confidence            00 1112111         111111 1111  1    12456778899999999999998774 3456665554445554


Q ss_pred             eeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465          229 KDKFHVSYGGAALNSSLSQVLVNCLR  254 (267)
Q Consensus       229 ~d~F~v~d~G~~l~~~~~~~L~~~L~  254 (267)
                      ..+|.=    -.+.+...+.|.+.|.
T Consensus       550 a~vlvG----i~v~~~e~~~l~~~l~  571 (591)
T PLN02550        550 ANVLVG----IQVPPEEMQEFKSRAN  571 (591)
T ss_pred             ccEEEE----EeeCHHHHHHHHHHHH
Confidence            444432    2222234455555553

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=81.99  E-value=13  Score=25.15  Aligned_cols=44  Identities=16%  Similarity=0.269  Sum_probs=30.5

Q ss_pred             EEEEEe---CCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          190 LLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       190 ~l~i~~---~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      .+.+.+   .+.||++++|.++|.+.|++|....-.+. + ..-.|.|.
T Consensus         3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s-~-~~is~~v~   49 (66)
T cd04922           3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSS-E-RNISAVID   49 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc-c-cEEEEEEe
Confidence            344544   47899999999999999999987754332 1 23345553

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>PRK14647 hypothetical protein; Provisional

Probab=81.94  E-value=21  Score=29.95  Aligned_cols=58  Identities=19%  Similarity=0.178  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465           86 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  147 (267)
Q Consensus        86 LL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~  147 (267)
                      +-..+..++..+||.+++..+...+...+-..+|... .|-.   =+.++.+-+.|.++|..
T Consensus        10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~-~gvs---lddC~~vSr~is~~LD~   67 (159)
T PRK14647         10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKE-GGVN---LDDCAEVSRELSEILDV   67 (159)
T ss_pred             HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCC-CCCC---HHHHHHHHHHHHHHHcc
Confidence            4445677899999999999999988766545666542 4533   47788888888887753

>PRK09084 aspartate kinase III; Validated

Probab=81.67  E-value=51  Score=32.20  Aligned_cols=105  Identities=12%  Similarity=0.141  Sum_probs=64.0

Q ss_pred             CCCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           70 NSDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        70 ~~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      .++...|+|.+.   +.+|.+.++...|.+.|++|..-.  +..  .--.|.|... +-.    ......+.+.+.+.|.
T Consensus       303 ~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse--~sIs~~i~~~-~~~----~~~~~~~~~~l~~el~  373 (448)
T PRK09084        303 RRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE--VSVSLTLDTT-GST----STGDTLLTQALLTELS  373 (448)
T ss_pred             eCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC--cEEEEEEech-hhh----hhhhHHHHHHHHHHHh
Confidence            356788899765   689999999999999999998765  222  2234666542 100    0111222223222232


Q ss_pred             ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCc
Q 024465          147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNV  214 (267)
Q Consensus       147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl  214 (267)
                      .  .                          ..+.++   .+...|.+.+.   ++||+++++..+|.+.++
T Consensus       374 ~--~--------------------------~~i~~~---~~va~IsvvG~gm~~~~gv~arif~aL~~~nI  413 (448)
T PRK09084        374 Q--L--------------------------CRVEVE---EGLALVALIGNNLSKACGVAKRVFGVLEPFNI  413 (448)
T ss_pred             c--C--------------------------CeEEEE---CCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence            1  0                          011122   24667777776   789999999999987533

>PRK14645 hypothetical protein; Provisional

Probab=81.49  E-value=27  Score=29.29  Aligned_cols=61  Identities=23%  Similarity=0.170  Sum_probs=44.2

Q ss_pred             ccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           84 LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        84 pGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      ..+-..+..++..+||.+++..+...+...+-..+|... +|..+ +=+.++++-+.|..+|.
T Consensus         9 ~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~-~~~~v-~lddC~~vSr~is~~LD   69 (154)
T PRK14645          9 PDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRK-DEQPV-TVEDLERASRALEAELD   69 (154)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECC-CCCCc-CHHHHHHHHHHHHHHhc
Confidence            346677788999999999999999887766545666542 34334 24678888888877775

>PRK00092 ribosome maturation protein RimP; Reviewed

Probab=81.34  E-value=24  Score=29.30  Aligned_cols=58  Identities=19%  Similarity=0.147  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465           86 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  147 (267)
Q Consensus        86 LL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~  147 (267)
                      +-..+..++..+|+.+++..+...+....-..+|... +|-   +-+.++++-+.|..+|..
T Consensus         9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~-~gv---~iddc~~~Sr~is~~LD~   66 (154)
T PRK00092          9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKE-GGI---DLDDCEEVSRQISAVLDV   66 (154)
T ss_pred             HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECC-CCC---CHHHHHHHHHHHHHHhcc
Confidence            4456678899999999999999987766545556542 453   347888888888887753

>PRK14639 hypothetical protein; Provisional

Probab=81.08  E-value=19  Score=29.70  Aligned_cols=54  Identities=20%  Similarity=0.193  Sum_probs=40.3

Q ss_pred             HHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465           90 TMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  147 (267)
Q Consensus        90 i~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~  147 (267)
                      +-.++..+|+.+++..+...+...+-..+|... .|  + +=+.++++-+.|.++|..
T Consensus         3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~-~g--v-~iddC~~vSr~is~~LD~   56 (140)
T PRK14639          3 LEALCKECGVSFYDDELVSENGRKIYRVYITKE-GG--V-NLDDCERLSELLSPIFDV   56 (140)
T ss_pred             hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCC-CC--C-CHHHHHHHHHHHHHHhcc
Confidence            345788999999999999988776656666542 45  3 347888888888887753

>PRK14638 hypothetical protein; Provisional

Probab=80.66  E-value=25  Score=29.25  Aligned_cols=59  Identities=15%  Similarity=0.065  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465           86 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  147 (267)
Q Consensus        86 LL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~  147 (267)
                      +-..+..++..+|+.+++..+...+.+..-..+|... +|. + +-+.++++-+.|..+|..
T Consensus        10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~-~G~-v-~lddC~~vSr~is~~LD~   68 (150)
T PRK14638         10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNP-VGY-V-SVRDCELFSREIERFLDR   68 (150)
T ss_pred             HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECC-CCC-c-CHHHHHHHHHHHHHHhcc
Confidence            4456677889999999999999888776656666543 453 3 247888888888887753

>PRK08818 prephenate dehydrogenase; Provisional

Probab=80.58  E-value=4.7  Score=38.58  Aligned_cols=49  Identities=14%  Similarity=0.221  Sum_probs=39.4

Q ss_pred             CeEEEEEEeC-CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe
Q 024465           72 DATIVQLSFG-DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  121 (267)
Q Consensus        72 ~~t~V~V~~~-DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~  121 (267)
                      ..+.+.+.-+ |+||-|+++...|...|+||.+-.+.....+.+- |+|.-
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEE
Confidence            3456666665 9999999999999999999999888555555555 88865

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=80.15  E-value=7.3  Score=33.07  Aligned_cols=65  Identities=20%  Similarity=0.261  Sum_probs=46.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  144 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~  144 (267)
                      .++.+.-.|.||.|.++++.|+..||||-+-.+.-+.+...--..+.-  .|    ++..++++.+.|...
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv--~g----~~~~~EQi~kQL~kL   69 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV--SG----DEQVLEQIIKQLNKL   69 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE--cC----CcchHHHHHHHHHhh
Confidence            467888899999999999999999999999888666554332222222  23    234567777776553

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=80.14  E-value=16  Score=24.78  Aligned_cols=33  Identities=15%  Similarity=0.147  Sum_probs=26.8

Q ss_pred             EEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEE
Q 024465           74 TIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTV  106 (267)
Q Consensus        74 t~V~V~~---~DRpGLL~di~~~L~~~~lnI~~A~I  106 (267)
                      ..|+|.|   ++.||++.++..+|.+.|++|.--..
T Consensus         2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~   37 (66)
T cd04922           2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ   37 (66)
T ss_pred             eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence            3566666   48899999999999999999976544

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 5/45 (11%), Positives = 20/45 (44%)

Query: 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 235
           + I   D+ G+  +I  +I+  + ++ +  ++ +  +      + 
Sbjct: 8   IRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF 52

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 44/352 (12%), Positives = 88/352 (25%), Gaps = 126/352 (35%)

Query: 16  KEFVFREKIFLQLLSRNILFASVNGTNAVSPTPLKSDQDADYIP---MP----HVLIDQD 68
           K  V R + +L+L              A     L   + A  +    +       +    
Sbjct: 128 KYNVSRLQPYLKL------------RQA-----LLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 69  SNSDATIVQLSFG---------DRLGALIDTMNAL----KDLGLDVAKGTVNTEGSVKQT 115
             S     ++ F          +    +++ +  L           +  + N +  +   
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 116 KFFITRLDTGRK----------VEDPDLLE------RIRLT--------IINNLLKYH-- 149
           +  + RL   +           V++           +I LT         ++     H  
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 150 ----------PESSEQLAMGEAFGIKA---PEKKLDVD------IATHIHVKEDGPKR-- 188
                      E    L   +    +    P + L  +      IA  I    DG     
Sbjct: 291 LDHHSMTLTPDEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAESIR---DGLATWD 345

Query: 189 ----------------SLLYIETADRPGLLVEIMKIIADVNV--DV------ESAEIDTE 224
                           SL  +E A+   +   +       ++   +      +  + D  
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 225 ---------GLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267
                     LV K     +    ++   L   L N   Y L R  + +D Y
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN--EYALHR--SIVDHY 453

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.8
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.76
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.9
2f06_A	144	Conserved hypothetical protein; structural genomic	98.56
2nyi_A	195	Unknown protein; protein structure initiative, PSI	98.22
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.18
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.1
1u8s_A	192	Glycine cleavage system transcriptional repressor,	98.03
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.0
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.78
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.63
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.34
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.27
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.26
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.22
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.19
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.17
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.14
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.05
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.04
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.99
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.99
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	96.96
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.95
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.86
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.83
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.73
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	96.73
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.6
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.48
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.43
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.32
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.24
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.21
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.87
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.47
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	95.19
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	95.06
2f06_A	144	Conserved hypothetical protein; structural genomic	94.97
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	94.35
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	94.12
3luy_A	329	Probable chorismate mutase; structural genomics, A	93.92
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	93.65
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	93.65
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	93.3
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	93.09
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	91.79
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	90.83
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	88.92
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	88.34
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	87.8
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	87.48
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	87.26
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	85.86
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	84.18

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.80  E-value=8.4e-19  Score=150.59  Aligned_cols=156  Identities=14%  Similarity=0.180  Sum_probs=113.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCCC
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE  151 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~~  151 (267)
                      ..++|+|+|+|||||++.|+++|+++|+||.+|++++..+++.-.|.+...  +.  ..+.++++|++.|...+..... 
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~--~~--~~~~~~~~l~~~L~~~~~~~~~-   78 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN--AK--DGKLIQSALESALPGFQISTRR-   78 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SS--SSHHHHHHHHHHSTTCEEEEEE-
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec--Cc--cchhHHHHHHHHHHHHHHhcCC-
Confidence            457999999999999999999999999999999999999888667777653  21  2234567777775543321100 


Q ss_pred             chhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC--Ceee
Q 024465          152 SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAK  229 (267)
Q Consensus       152 ~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g--~~a~  229 (267)
                                   ....+  .   .+    .......++|+|.|+|||||+++|+++|+++|+||..++..|.+  +++.
T Consensus        79 -------------~~~~~--~---~~----~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~  136 (195)
T 2nyi_A           79 -------------ASSVA--E---RH----VSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGF  136 (195)
T ss_dssp             -------------CCCC-------------CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTC
T ss_pred             -------------eEEEE--e---CC----cCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCC
Confidence                         00001  0   01    12223478999999999999999999999999999999999998  7788


Q ss_pred             eEEEEEe-CCCCCChHHHHHHHHHHHHH
Q 024465          230 DKFHVSY-GGAALNSSLSQVLVNCLRYY  256 (267)
Q Consensus       230 d~F~v~d-~G~~l~~~~~~~L~~~L~~~  256 (267)
                      +.|+++. .+.+ .... +.|+++|...
T Consensus       137 ~~F~m~~~~~~~-~~~~-~~l~~~l~~~  162 (195)
T 2nyi_A          137 TLFRMGSRVAFP-FPLY-QEVVTALSRV  162 (195)
T ss_dssp             EEEEEEEEEEEE-GGGH-HHHHHHHHHH
T ss_pred             CeEEEEEEEEcC-CCcc-HHHHHHHHHH
Confidence            9999986 4433 1224 6666666644

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.76  E-value=8.9e-17  Score=137.05  Aligned_cols=155  Identities=13%  Similarity=0.159  Sum_probs=109.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCCCc
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES  152 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~~~  152 (267)
                      ..+|+|.|+||||++++++++|+++|+||.++++++.++++.-.|.+...        ...+++|++.|...+...... 
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~~~~~~~~~-   76 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPLLGQQHDLI-   76 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHHHHHHHTCE-
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC--------CCCHHHHHHHHHHHHHhcCCE-
Confidence            46899999999999999999999999999999999988888767777542        246778888887654321110 


Q ss_pred             hhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCC----ee
Q 024465          153 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL----VA  228 (267)
Q Consensus       153 ~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~----~a  228 (267)
                       ..+     .  +..+       ++    .......++|.+.|+||||++++|+++|+++|+||..++..|.+.    +.
T Consensus        77 -~~~-----~--~~~~-------~~----~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~  137 (192)
T 1u8s_A           77 -TMM-----K--RTSP-------HD----HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSE  137 (192)
T ss_dssp             -EEE-----E--EECC-------CC----CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC-------
T ss_pred             -EEE-----E--eCCC-------CC----CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCC
Confidence             000     0  0000       00    111224789999999999999999999999999999999999984    68


Q ss_pred             eeEEEEEe-CCCCCChHHHHHHHHHHHHH
Q 024465          229 KDKFHVSY-GGAALNSSLSQVLVNCLRYY  256 (267)
Q Consensus       229 ~d~F~v~d-~G~~l~~~~~~~L~~~L~~~  256 (267)
                      .+.|+++. .+.+ .....+.|+++|...
T Consensus       138 ~~~F~~~~~~~~~-~~~~~~~l~~~l~~~  165 (192)
T 1u8s_A          138 QNQFHIAISARVD-SGCNLMQLQEEFDAL  165 (192)
T ss_dssp             -CEEEEEEEEEEC-TTSCHHHHHHHHHHH
T ss_pred             CCEEEEEEEEeCC-CCCCHHHHHHHHHHH
Confidence            89999986 3322 111345566665543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.90  E-value=2.4e-07  Score=86.86  Aligned_cols=138  Identities=9%  Similarity=0.067  Sum_probs=90.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCCC
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE  151 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~~  151 (267)
                      ...+|+|.|+||||+.+.+++.|+++|+||.+.+.+..++.+.-...+.-. ++.     ...+.|++.|...-..... 
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~-~~~-----~~~~~l~~~l~~~~~~~~~-   83 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP-ADV-----ADGPALRHDVEAAIRKVGL-   83 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC-HHH-----HTSHHHHHHHHHHHHHTTC-
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec-CCc-----CCHHHHHHHHHHHHHHcCe-
Confidence            356899999999999999999999999999999999888766433333221 110     0225667776552221111 


Q ss_pred             chhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCC-cccHHHHHHHHHHhCCccEEEEEEEecCCeeee
Q 024465          152 SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD  230 (267)
Q Consensus       152 ~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~D-RpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d  230 (267)
                       .-.+.       +...       .+    ......++.+.+.+.| ++|++.+|+.+|+++|+||.....-+......-
T Consensus        84 -~~~~~-------~~~~-------~~----~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~  144 (415)
T 3p96_A           84 -DVSIE-------RSDD-------VP----IIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGL  144 (415)
T ss_dssp             -EEEEE-------ECSS-------SC----SSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEE
T ss_pred             -EEEEE-------ECCc-------cc----ccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEE
Confidence             00000       0000       00    0012347889999999 999999999999999999999887774333333


Q ss_pred             EEEEE
Q 024465          231 KFHVS  235 (267)
Q Consensus       231 ~F~v~  235 (267)
                      -|++.
T Consensus       145 ~~~v~  149 (415)
T 3p96_A          145 ELRVS  149 (415)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            36663

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.56  E-value=2.8e-06  Score=68.39  Aligned_cols=112  Identities=13%  Similarity=0.184  Sum_probs=75.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCCCch
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESS  153 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~~~~  153 (267)
                      ..++|..+|+||.++++++.|.+.|+||..-.+....+...-.|.+.         ++   ++.++.|++ . +  .  .
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~---------d~---~~a~~~L~~-~-G--~--~   68 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS---------DP---DKAYKALKD-N-H--F--A   68 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES---------CH---HHHHHHHHH-T-T--C--C
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC---------CH---HHHHHHHHH-c-C--C--e
Confidence            47888999999999999999999999999887765444222123221         22   233344332 1 1  0  0


Q ss_pred             hHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEE
Q 024465          154 EQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFH  233 (267)
Q Consensus       154 ~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~  233 (267)
                                                 +    ....++-+..+|+||.+++|+++|+++|+||.+......+.++.-+|.
T Consensus        69 ---------------------------v----~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~  117 (144)
T 2f06_A           69 ---------------------------V----NITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIR  117 (144)
T ss_dssp             ---------------------------E----EEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEE
T ss_pred             ---------------------------E----eeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEE
Confidence                                       0    012456677889999999999999999999987765533455544444


Q ss_pred             E
Q 024465          234 V  234 (267)
Q Consensus       234 v  234 (267)
                      +
T Consensus       118 ~  118 (144)
T 2f06_A          118 P  118 (144)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=98.22  E-value=1.9e-06  Score=73.25  Aligned_cols=73  Identities=11%  Similarity=0.002  Sum_probs=54.9

Q ss_pred             CCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465           69 SNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  145 (267)
Q Consensus        69 ~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~--~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L  145 (267)
                      .....++|+|.|+||||++++|+++|+++|+||.+++.++.+  ....+.|+++.. -+.+  +... +.|++.|....
T Consensus        89 ~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~-~~~~--~~~~-~~l~~~l~~~a  163 (195)
T 2nyi_A           89 PDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSR-VAFP--FPLY-QEVVTALSRVE  163 (195)
T ss_dssp             TTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEE-EEEE--GGGH-HHHHHHHHHHH
T ss_pred             CCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEE-EEcC--CCcc-HHHHHHHHHHH
Confidence            345668999999999999999999999999999999999987  333466776653 2221  2234 77777776643

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.18  E-value=1.3e-05  Score=59.14  Aligned_cols=65  Identities=11%  Similarity=0.112  Sum_probs=50.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      ....++|.|+||||++++++.+|+++|+||.+....+..+.+.-.+.+.-.  +.     ..++.|.+.|..
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~~-----~~l~~l~~~L~~   68 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--EK-----QDFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SC-----CCHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--CC-----CCHHHHHHHHHH
Confidence            346899999999999999999999999999999999887655555555432  21     235667777665

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.10  E-value=2.6e-05  Score=57.48  Aligned_cols=47  Identities=11%  Similarity=0.208  Sum_probs=40.2

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  234 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v  234 (267)
                      .+.|.+.+.||||+|++|+++|+++|+||.+....+.++...-.+.+
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v   51 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVV   51 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEE
Confidence            57899999999999999999999999999999998876554444444

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=98.03  E-value=2.3e-05  Score=65.99  Aligned_cols=65  Identities=15%  Similarity=0.174  Sum_probs=50.7

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  257 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l  257 (267)
                      .+.|.|.|+||||+++.|+.+|+++|+||..+++.+.++.-.-.|.+...     ....++|++.|....
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~~~   70 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-----PSNITRVETTLPLLG   70 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-----HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-----CCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999998877665556777532     124456666665443

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.00  E-value=3.5e-05  Score=56.05  Aligned_cols=63  Identities=13%  Similarity=0.214  Sum_probs=46.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLR  254 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~  254 (267)
                      .+.|.+.+.||||+|++|+++|++.|+||.++.+.+.++.+...|.+.-.+    ...++++.+.|.
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~----~~~l~~l~~~L~   67 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN----TDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS----HHHHHHHHHHHT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence            567889999999999999999999999999999988766444555443221    224455555543

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.78  E-value=0.00015  Score=52.66  Aligned_cols=62  Identities=10%  Similarity=0.132  Sum_probs=46.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHH
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTI  141 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L  141 (267)
                      .+.+.|.+.||||+|++++.+|++.|+||....+.+.++.+...|.+.-.       +.+.++++.+.|
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~L   66 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-------NTDKLTTLMDKL   66 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-------SHHHHHHHHHHH
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-------CHHHHHHHHHHH
Confidence            35788999999999999999999999999999998876633344444331       235556565554

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.63  E-value=0.00078  Score=55.52  Aligned_cols=111  Identities=11%  Similarity=0.126  Sum_probs=74.5

Q ss_pred             CCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-eEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhcc
Q 024465           71 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY  148 (267)
Q Consensus        71 ~~~t~V~V~-~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~-~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~  148 (267)
                      ++.+.|+|. ..|+||.++++...|.+.|+||..-......++ ..-.|.|...          ..++..+.|.+.... 
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~----------~~~~a~~~l~~~~~~-   91 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG----------DYKQTLEILSERQDS-   91 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG----------GHHHHHHHHHHSSTT-
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech----------HHHHHHHHHHHHHHH-
Confidence            477899999 499999999999999999999998765433333 2344666431          123334444442111 


Q ss_pred             CCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCC---cccHHHHHHHHHHhCCccEEEEE
Q 024465          149 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD---RPGLLVEIMKIIADVNVDVESAE  220 (267)
Q Consensus       149 ~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~D---RpGLL~~Itr~l~~~gl~I~~a~  220 (267)
                       ..                     +   ..+.+.   .+...+.+.+.+   +||+++++.++|+++|+||....
T Consensus        92 -l~---------------------~---~~i~~~---~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is  138 (167)
T 2re1_A           92 -IG---------------------A---ASIDGD---DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS  138 (167)
T ss_dssp             -TT---------------------C---SEEEEE---SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred             -cC---------------------C---ceEEec---CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence             00                     0   012222   247888998887   99999999999999999999843

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.34  E-value=0.0041  Score=51.73  Aligned_cols=112  Identities=20%  Similarity=0.249  Sum_probs=74.4

Q ss_pred             CCCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcC--C-eeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465           70 NSDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG--S-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  145 (267)
Q Consensus        70 ~~~~t~V~V~-~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~--~-~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L  145 (267)
                      .++.+.|+|. ..|+||.++++...|.+.|+||..-...+..  + ...-.|.+..          +..++..+.|.+ +
T Consensus        12 ~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~----------~d~~~a~~~l~~-~   80 (178)
T 2dtj_A           12 DKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR----------SDGRRAMEILKK-L   80 (178)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH----------HHHHHHHHHHHT-T
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc----------ccHHHHHHHHHH-H
Confidence            3577888884 6999999999999999999999876655432  2 2222365543          223344444433 2


Q ss_pred             hccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEEE
Q 024465          146 LKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  220 (267)
Q Consensus       146 ~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~  220 (267)
                      ... .                     .+   ..+.+.   .+...|.+.+.   ++||+++++.++|++.|+||....
T Consensus        81 ~~~-~---------------------~~---~~v~~~---~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is  130 (178)
T 2dtj_A           81 QVQ-G---------------------NW---TNVLYD---DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  130 (178)
T ss_dssp             TTT-T---------------------TC---SEEEEE---SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             HHh-c---------------------CC---CeEEEe---CCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence            110 0                     00   112222   24677788776   899999999999999999998853

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.27  E-value=0.0024  Score=52.43  Aligned_cols=138  Identities=14%  Similarity=0.184  Sum_probs=85.4

Q ss_pred             CCCeEEEEEEe-CCCccHHHHHHHHHHHCCceEEEEEEEEcC--Ce-eEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465           70 NSDATIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEG--SV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  145 (267)
Q Consensus        70 ~~~~t~V~V~~-~DRpGLL~di~~~L~~~~lnI~~A~I~T~~--~~-~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L  145 (267)
                      .++.+.|+|.+ +|+||.++++..+|.+.|+||..-......  .+ ..-.|.|...          ..++..+.|.+..
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~----------d~~~a~~~L~~~~   82 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD----------FAQEALEALEPVL   82 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG----------GHHHHHHHHHHHH
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH----------HHHHHHHHHHHHH
Confidence            45788888886 899999999999999999999875543221  22 2345777542          1122333333321


Q ss_pred             hccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCC---cccHHHHHHHHHHhCCccEEEEEEE
Q 024465          146 LKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD---RPGLLVEIMKIIADVNVDVESAEID  222 (267)
Q Consensus       146 ~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~D---RpGLL~~Itr~l~~~gl~I~~a~i~  222 (267)
                      ..        +               .+    .+.++   .+...+.+.+.+   +||.++++.++|++.|+||....  
T Consensus        83 ~~--------~---------------~~----~v~~~---~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--  130 (167)
T 2dt9_A           83 AE--------I---------------GG----EAILR---PDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--  130 (167)
T ss_dssp             HH--------H---------------CC----EEEEE---CSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--
T ss_pred             HH--------h---------------CC----cEEEe---CCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--
Confidence            11        0               00    12222   257888898886   99999999999999999995543  


Q ss_pred             ecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 024465          223 TEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR  258 (267)
Q Consensus       223 T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~  258 (267)
                      |. +. .-.|.|..       +..+...++|+....
T Consensus       131 ~S-e~-~is~vv~~-------~d~~~Av~~Lh~~f~  157 (167)
T 2dt9_A          131 TS-EV-RISVIIPA-------EYAEAALRAVHQAFE  157 (167)
T ss_dssp             EC-SS-EEEEEEEG-------GGHHHHHHHHHHHTC
T ss_pred             cc-CC-EEEEEEeH-------HHHHHHHHHHHHHHc
Confidence            33 22 44555632       123344455555544

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.26  E-value=0.0014  Score=59.54  Aligned_cols=39  Identities=13%  Similarity=0.171  Sum_probs=36.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      ...+++|.|+||||+.+.++..|+++|+||.+.+.++..
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~   59 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDN   59 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEET
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecC
Confidence            446899999999999999999999999999999999763

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.22  E-value=0.00094  Score=55.46  Aligned_cols=65  Identities=12%  Similarity=0.274  Sum_probs=50.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  257 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g--~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l  257 (267)
                      ...|.+...||||+|++|+++|++.|+||.+..+.+..  +...-+|.+.  |.   +..+++|.+.|.+..
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~--~d---~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--GD---EKVLEQIEKQLHKLV   69 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--SC---HHHHHHHHHHHHHST
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe--cc---HHHHHHHHHHHcCCC
Confidence            35788999999999999999999999999999997544  3455555663  32   447788888877654

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.19  E-value=0.013  Score=52.74  Aligned_cols=38  Identities=13%  Similarity=0.003  Sum_probs=35.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      ..+++|.|+||||+.+.++..|+++|+||.+.+.++..
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~   45 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDR   45 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccC
Confidence            36899999999999999999999999999999999643

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.17  E-value=0.024  Score=50.94  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=34.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      ..+++|.|+||||+.+.++..|+++|+||.+.+.+++.
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~   43 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDT   43 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEET
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecC
Confidence            36899999999999999999999999999999998543

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.14  E-value=0.00056  Score=61.81  Aligned_cols=47  Identities=11%  Similarity=0.229  Sum_probs=38.5

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      ..++|.+.|+|||||++.||++|+++|+||..+.-.+.  ...+.|+.+
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d--~~~g~Ffmr   55 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDD--DLSARFFVR   55 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEE--TTTTEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEec--CCCCceEEE
Confidence            36789999999999999999999999999999887653  233455554

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.05  E-value=0.0012  Score=59.48  Aligned_cols=39  Identities=13%  Similarity=0.221  Sum_probs=35.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      ...+++|.|+||||+.+.++..|+++|+||.+.+.+++.
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~   44 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDE   44 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecC
Confidence            456899999999999999999999999999999998543

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.04  E-value=0.0023  Score=58.10  Aligned_cols=48  Identities=19%  Similarity=0.257  Sum_probs=39.1

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          186 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       186 s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      ...++|.+.|+|||||++.||++|+++|+||..+.-.+..  ..+.|+.+
T Consensus        20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~--~~g~FfMr   67 (302)
T 3o1l_A           20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDN--LSGWFFMR   67 (302)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEET--TTTEEEEE
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecC--CCCeEEEE
Confidence            3578999999999999999999999999999998876542  23345554

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.99  E-value=0.0016  Score=54.18  Aligned_cols=65  Identities=11%  Similarity=0.272  Sum_probs=50.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  257 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g--~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l  257 (267)
                      ...|.+...|+||+|++|+++|++.|+||.+..+.+..  +...-+|.+.  |.   +..+++|.+.|.+..
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~--~d---~~~leql~kQL~Kl~   70 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN--GP---DEIVEQITKQLNKLI   70 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE--EC---HHHHHHHHHHHHHST
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe--cc---HHHHHHHHHHhcCCC
Confidence            45788999999999999999999999999999986443  4455556663  22   446788888877654

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.99  E-value=0.003  Score=51.10  Aligned_cols=36  Identities=31%  Similarity=0.445  Sum_probs=33.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  225 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g  225 (267)
                      .|+|.|.||+|||++|+++|+++++||..+.+.+.|
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g   37 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG   37 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC
Confidence            478999999999999999999999999999997763

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=96.96  E-value=0.00087  Score=60.41  Aligned_cols=47  Identities=19%  Similarity=0.370  Sum_probs=38.5

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      ..++|.+.|+|||||++.|+++|+++|+||....-.+.  ...+.|+.+
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d--~~~g~Ffmr   52 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFND--EDSSKFFMR   52 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTTTEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeec--CCCCeEEEE
Confidence            46789999999999999999999999999999887542  233456654

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.95  E-value=0.0016  Score=58.82  Aligned_cols=39  Identities=18%  Similarity=0.137  Sum_probs=35.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      ...+++|.|+||||+.+.++..|+++|+||.+.+.++..
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~   47 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDD   47 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEET
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecC
Confidence            346899999999999999999999999999999999643

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.86  E-value=0.0062  Score=54.80  Aligned_cols=36  Identities=14%  Similarity=0.296  Sum_probs=33.3

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEe
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT  223 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T  223 (267)
                      .++|.+.|+|||||++.||++|+++|+||....-.+
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~   41 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYN   41 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeee
Confidence            578999999999999999999999999999998754

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.83  E-value=0.0052  Score=50.91  Aligned_cols=62  Identities=18%  Similarity=0.242  Sum_probs=48.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eeE-EEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-~~~-d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      ..+.|.+.|+||+|++++++|++.|+||.+..+....+ +.. -+|.+. .       ++..+++|.+.|..
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~-------d~~~leqI~kqL~K   67 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G-------DEKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S-------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c-------cHHHHHHHHHHHcC
Confidence            57899999999999999999999999999999987664 443 344553 2       24677888888765

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.73  E-value=0.0085  Score=53.88  Aligned_cols=47  Identities=9%  Similarity=0.116  Sum_probs=38.5

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      ..++|.+.|+|||||++.||++|+++|+||....-.+.  ...+.|+.+
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d--~~~g~Ffmr   53 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDD--RQSGRFFIR   53 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTTTEEEEE
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeecc--CCCCeeEEE
Confidence            35789999999999999999999999999999887653  233456554

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=96.73  E-value=0.0016  Score=60.70  Aligned_cols=41  Identities=15%  Similarity=0.269  Sum_probs=37.1

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV  227 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~  227 (267)
                      ..++|.+.|+|||||++.|+++|+++|+||....-.+.++.
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~   51 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHR   51 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCE
Confidence            46789999999999999999999999999999998776654

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.60  E-value=0.082  Score=44.01  Aligned_cols=111  Identities=14%  Similarity=0.147  Sum_probs=71.8

Q ss_pred             CCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcC--Cee-EEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           71 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        71 ~~~t~V~V~-~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~--~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      ++.+.|+|. .+|+||.++++...|.+.|+||..-......  .+. --.|.|...          ..++..+.|.+...
T Consensus        14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~----------~~~~a~~~L~~~~~   83 (181)
T 3s1t_A           14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD----------VGPAAVEKLDSLRN   83 (181)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT----------THHHHHHHHHHTHH
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh----------HHHHHHHHHHHHHH
Confidence            466777764 6899999999999999999999765443232  333 345777542          11223333333111


Q ss_pred             ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEEE
Q 024465          147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  220 (267)
Q Consensus       147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~  220 (267)
                      .        +.                  ...|.+++   +...+.+.+.   ++||+++++.++|++.|+||....
T Consensus        84 e--------l~------------------~~~v~~~~---~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           84 E--------IG------------------FSQLLYDD---HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             H--------HC------------------CSEEEEES---CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             h--------cC------------------cceEEEeC---CEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            0        00                  01122222   4667777665   899999999999999999998877

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.48  E-value=0.0065  Score=51.65  Aligned_cols=65  Identities=11%  Similarity=0.187  Sum_probs=48.3

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE-ecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  257 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~-T~g-~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l  257 (267)
                      ...|.|...|+||.|++|+++|++.|+||.+..+. |.. +...=++.|...     +...++|.+.|.+.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-----e~~ieqL~kQL~KLi   95 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-----DKTIEQIEKQAYKLV   95 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-----TTHHHHHHHHHTTST
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-----HHHHHHHHHHhcCcC
Confidence            56788999999999999999999999999999986 433 334444555323     335677777776643

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.43  E-value=0.014  Score=47.03  Aligned_cols=59  Identities=14%  Similarity=0.172  Sum_probs=44.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      .|.|.|.||+|||.+|+.+|.+.++||....+.+.  +.   +++.-+     ..+.+.+..|...|..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~--g~---i~~~~~-----~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI--GR---IYLNFA-----ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT--TE---EEEEEC-----CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC--CE---EEEEEE-----eCCHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999666  32   334332     1234566777776655

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.32  E-value=0.0097  Score=49.34  Aligned_cols=62  Identities=15%  Similarity=0.239  Sum_probs=48.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eeE-EEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-~~~-d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      ..++|...|+||+|++++++|++.|+||.+..+....+ +.. -+|.+..        ++..+++|.+.|..
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~K   68 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNK   68 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999986654 433 3455532        14677888887665

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.24  E-value=0.0078  Score=52.08  Aligned_cols=38  Identities=21%  Similarity=0.174  Sum_probs=31.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  225 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g  225 (267)
                      ...|.+.+.||||+|++|+++|+++++||......+..
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            56788999999999999999999999999999998854

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.21  E-value=0.023  Score=48.43  Aligned_cols=124  Identities=13%  Similarity=0.153  Sum_probs=76.5

Q ss_pred             CCCCCCEEE-EeecCCCCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeeE-EEEEEEeCCCCCCCCC
Q 024465           56 DYIPMPHVL-IDQDSNSDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQ-TKFFITRLDTGRKVED  130 (267)
Q Consensus        56 ~~~~~p~V~-i~~~~~~~~t~V~V~-~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~--~~~~-d~F~I~~~~~g~~l~~  130 (267)
                      +..+.|.|. |..  .++.+.|+|. .+|+||..+++...|++.|+||-.-......  ++.. ..|.+...        
T Consensus        19 ~~mE~~vVtGIa~--~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~--------   88 (200)
T 4go7_X           19 NHMEDPILTGVAH--DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD--------   88 (200)
T ss_dssp             -CCCSCEEEEEEE--ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG--------
T ss_pred             CccccCcEEEEEc--cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh--------
Confidence            345567663 332  4577888887 6999999999999999999999875443322  2333 34555431        


Q ss_pred             hHHHHHHHHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEE---eCCcccHHHHHHH
Q 024465          131 PDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIE---TADRPGLLVEIMK  207 (267)
Q Consensus       131 ~~~~erl~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~---~~DRpGLL~~Itr  207 (267)
                        .+++....|.+....        +.                  ...+.+++   +...+.+.   ...+||+.+++.+
T Consensus        89 --d~~~~~~~l~~~~~~--------~~------------------~~~v~~~~---~iakVSvVG~GM~~~~GVaak~F~  137 (200)
T 4go7_X           89 --VGPAAVEKLDSLRNE--------IG------------------FSQLLYDD---HIGKVSLIGAGMRSHPGVTATFCE  137 (200)
T ss_dssp             --GHHHHHHHHHTTHHH--------HC------------------CSEEEEEC---CEEEEEEEEESCTTCHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHhh--------hc------------------eeeEEEec---CeeeeeeeccccccCCCcHHHHHH
Confidence              222233332221111        00                  01122222   34455554   4588999999999


Q ss_pred             HHHhCCccEEEEE
Q 024465          208 IIADVNVDVESAE  220 (267)
Q Consensus       208 ~l~~~gl~I~~a~  220 (267)
                      +|++.|+||....
T Consensus       138 aLa~~~INI~mIs  150 (200)
T 4go7_X          138 ALAAVGVNIELIS  150 (200)
T ss_dssp             HHHHTTCCCCEEE
T ss_pred             HHHHCCCCEEEEE
Confidence            9999999998875

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.87  E-value=0.15  Score=47.90  Aligned_cols=110  Identities=20%  Similarity=0.224  Sum_probs=73.0

Q ss_pred             CCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcC--Cee-EEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465           71 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  146 (267)
Q Consensus        71 ~~~t~V~V~-~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~--~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~  146 (267)
                      ++.+.|+|. ..|+||.++++...|.+.|+||..-...+..  .+. .-.|.|...       +.++   ..+.|++ +.
T Consensus       262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~-------~~~~---a~~~l~~-~~  330 (421)
T 3ab4_A          262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS-------DGRR---AMEILKK-LQ  330 (421)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT-------THHH---HHHHHHH-HH
T ss_pred             CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech-------hHHH---HHHHHHH-HH
Confidence            467888888 6899999999999999999999976654332  232 345666531       1222   2333333 21


Q ss_pred             ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEE
Q 024465          147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESA  219 (267)
Q Consensus       147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a  219 (267)
                      .. ..                     +   ..+.++   .+...+.|.+.   ++||.++++.++|.+.|+||...
T Consensus       331 ~~-~~---------------------~---~~v~~~---~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          331 VQ-GN---------------------W---TNVLYD---DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             TT-TT---------------------C---SEEEEE---CCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             HH-cC---------------------C---ceEEEe---CCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence            10 00                     0   012222   24677888775   79999999999999999999854

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.47  E-value=0.025  Score=48.90  Aligned_cols=37  Identities=11%  Similarity=0.132  Sum_probs=31.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      ..+.|.+.||||+|++++.+|++++.||...+..+..
T Consensus         5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            5789999999999999999999999999999999976

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=95.19  E-value=0.07  Score=45.24  Aligned_cols=63  Identities=13%  Similarity=0.207  Sum_probs=46.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eeE-EEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-~~~-d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      ...++|...|+||.|++++++|+..|+||.+-.+....+ +.. -++.+..    .    +..+++|.+.|..
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g----~----e~~ieqL~kQL~K   93 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG----D----DKTIEQIEKQAYK   93 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE----C----TTHHHHHHHHHTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC----C----HHHHHHHHHHhcC
Confidence            358999999999999999999999999999988875544 443 3344532    1    2456667766544

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=95.06  E-value=0.045  Score=51.37  Aligned_cols=48  Identities=21%  Similarity=0.320  Sum_probs=42.4

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  234 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v  234 (267)
                      +...|-+.-.|+||.+..|+.+|.++|+||....+.+.|+.+.-++.+
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            455677889999999999999999999999999999988887777666

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=94.97  E-value=0.078  Score=41.89  Aligned_cols=36  Identities=22%  Similarity=0.356  Sum_probs=31.9

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEe
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT  223 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T  223 (267)
                      -..|.+..+|+||.|++|++.|+++|+||....+..
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~   41 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE   41 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence            356778889999999999999999999999988754

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=94.35  E-value=0.13  Score=46.07  Aligned_cols=55  Identities=13%  Similarity=0.150  Sum_probs=44.6

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCCC
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALN  242 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l~  242 (267)
                      .+.|-+..+|+||.|+++-..|+.+|||+.+.+.-..+++ ..=.|||.-.|..-+
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d  255 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHRED  255 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTS
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCc
Confidence            4677777789999999999999999999999999776655 666788844787543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=94.12  E-value=0.24  Score=47.86  Aligned_cols=62  Identities=19%  Similarity=0.337  Sum_probs=48.9

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHH
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVN  251 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v~d~G~~l~~~~~~~L~~  251 (267)
                      ++..|.+.-.|+||.+..|+.+|.++|+||...++.-.  |+.+.-++.+   ..+++++..++|++
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v---d~~~~~~~l~~l~~  516 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL---DQDVPDDVRTAIAA  516 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE---SSCCCHHHHHHHHH
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE---CCCCCHHHHHHHhc
Confidence            47788899999999999999999999999999999654  4555555555   44566766666654

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=93.92  E-value=0.44  Score=43.51  Aligned_cols=58  Identities=14%  Similarity=0.190  Sum_probs=43.2

Q ss_pred             eEEEEEEeC--CcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCCChHH
Q 024465          188 RSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSL  245 (267)
Q Consensus       188 ~t~l~i~~~--DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l~~~~  245 (267)
                      .+.+-+...  |+||-|+++-..|+.+|||+++.+.-..+++ -.=.|||.-.|..-+...
T Consensus       206 kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v  266 (329)
T 3luy_A          206 YESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERF  266 (329)
T ss_dssp             EEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHH
T ss_pred             ceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHH
Confidence            344445554  7999999999999999999999999776665 455777743887643333

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=93.65  E-value=0.19  Score=45.59  Aligned_cols=54  Identities=24%  Similarity=0.388  Sum_probs=43.7

Q ss_pred             eEEEEEEeC-CcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCC
Q 024465          188 RSLLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAAL  241 (267)
Q Consensus       188 ~t~l~i~~~-DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l  241 (267)
                      .|.|-+..+ |+||.|+++-..|+.+|||+.+.+.-..+++ ..=.|||.-.|..-
T Consensus       201 kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~  256 (313)
T 3mwb_A          201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHAT  256 (313)
T ss_dssp             EEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTT
T ss_pred             eEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCC
Confidence            577777775 9999999999999999999999998766554 45578884377753

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=93.30  E-value=0.31  Score=43.20  Aligned_cols=66  Identities=18%  Similarity=0.239  Sum_probs=48.1

Q ss_pred             CeEEEEEEe---CCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465          187 KRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLR  254 (267)
Q Consensus       187 ~~t~l~i~~---~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l~~~~~~~L~~~L~  254 (267)
                      ..|.|-+..   .|+||.|+++-..|+.+|||+.+.+.-..+++ ..=.|||.-. . +.++..++..+.|.
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~-~~d~~v~~aL~~L~  254 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S-AITTDIKKVIAILE  254 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C-CSCHHHHHHHHHHH
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c-CCcHHHHHHHHHHH
Confidence            356777777   89999999999999999999999999776554 5667888436 3 44553333333443

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=93.09  E-value=1.8  Score=42.50  Aligned_cols=139  Identities=15%  Similarity=0.150  Sum_probs=86.7

Q ss_pred             CCCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcC---Ce--e-EEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465           70 NSDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG---SV--K-QTKFFITRLDTGRKVEDPDLLERIRLTII  142 (267)
Q Consensus        70 ~~~~t~V~V~-~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~---~~--~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~  142 (267)
                      +++.+.|+|. .+|+||..+++...|.+.|+||---..+...   ++  . --.|.+..          +.+++..+.|+
T Consensus       441 ~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~----------~d~~~a~~~l~  510 (600)
T 3l76_A          441 DQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE----------GDSSQAEAILQ  510 (600)
T ss_dssp             ECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH----------HHHHHHHHHHH
T ss_pred             eCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH----------HHHHHHHHHHH
Confidence            3577788775 5899999999999999999999654444332   13  2 23455543          34445555544


Q ss_pred             HHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEe---CCcccHHHHHHHHHHhCCccEEEE
Q 024465          143 NNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESA  219 (267)
Q Consensus       143 ~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~---~DRpGLL~~Itr~l~~~gl~I~~a  219 (267)
                      + +... ..                        ..++.+++   +..+|.+.+   ..+||..+++.++|++.|+||...
T Consensus       511 ~-~~~~-~~------------------------~~~v~~~~---~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mi  561 (600)
T 3l76_A          511 P-LIKD-WL------------------------DAAIVVNK---AIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMI  561 (600)
T ss_dssp             H-HTTT-ST------------------------TCEEEEEC---CEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEE
T ss_pred             H-HHHh-cC------------------------CceEEEeC---CeEEEEEECcccccCccHHHHHHHHHHHCCCceEEE
Confidence            4 2110 00                        01122332   477888876   589999999999999999999776


Q ss_pred             EEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 024465          220 EIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR  258 (267)
Q Consensus       220 ~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~  258 (267)
                      .  |-.  ..=.+.|.       ....+...++|+.+..
T Consensus       562 s--tSE--i~Is~vV~-------~~~~~~Av~alh~~F~  589 (600)
T 3l76_A          562 A--TSE--IKISCVVP-------QDRGVDALKAAHSAFN  589 (600)
T ss_dssp             E--ECS--SEEEEEEE-------GGGHHHHHHHHHHHTT
T ss_pred             E--cCC--ceEEEEEe-------HHHHHHHHHHHHHHhC
Confidence            6  322  22234442       2233444567777664

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=91.79  E-value=2.4  Score=41.61  Aligned_cols=123  Identities=15%  Similarity=0.225  Sum_probs=75.6

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465           71 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  147 (267)
Q Consensus        71 ~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~  147 (267)
                      ++...|.|.+.   .+||...++..+|.+.|+||..-.  +.  ..--.|.|...          ..++..+.|.+.+..
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS--e~~Is~vI~~~----------d~~~Av~aLh~~f~~  418 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS--EVKVSCVIDQR----------DADRAIAALSNAFGV  418 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEGG----------GHHHHHHHHHHHTTC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC--CCEEEEEEcHH----------HHHHHHHHHHHhhcc
Confidence            57889999975   799999999999999999998665  32  22233666542          234445555555532


Q ss_pred             cCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEE-EeCCcccHHHHHHHHHHhCCccEEEEEEE
Q 024465          148 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYI-ETADRPGLLVEIMKIIADVNVDVESAEID  222 (267)
Q Consensus       148 ~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i-~~~DRpGLL~~Itr~l~~~gl~I~~a~i~  222 (267)
                      ....          .  ..+.....-+.-+-|..+.   +...|.+ ..+|+||+.++|-..|+++|++|...--+
T Consensus       419 ~~t~----------~--~~~~~~~~~~~v~Gia~~~---~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~  479 (600)
T 3l76_A          419 TLSP----------P--KNQTDTSHLPAVRGVALDQ---DQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQS  479 (600)
T ss_dssp             CBCC----------C--CCCCC---CCSCCEEEEEC---SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             cCCC----------c--cccccccccCceEEEEeeC---CEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence            1000          0  0000000111223343333   3455555 45899999999999999999999655443

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=90.83  E-value=1.5  Score=41.44  Aligned_cols=108  Identities=12%  Similarity=0.173  Sum_probs=70.6

Q ss_pred             CCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465           71 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  147 (267)
Q Consensus        71 ~~~t~V~V~~---~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~  147 (267)
                      ++.+.|+|.+   .+.||.++++..+|.+.|++|..-.  +...  --.|.|... +-.     ...+++.+.|...+..
T Consensus       296 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~--~~~~--~is~~V~~~-d~~-----~~~~~~~~el~~~~~~  365 (446)
T 3tvi_A          296 KNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMP--SGVD--SVSLVIEDC-KLD-----GKCDKIIEEIKKQCNP  365 (446)
T ss_dssp             EEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBC--EETT--EEEEEEEHH-HHT-----TTHHHHHHHHHHHSCC
T ss_pred             CCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEe--cCCC--EEEEEEecc-hHH-----HHHHHHHHHHHHhcCC
Confidence            4677889986   6899999999999999999998642  2222  234667542 110     0123333333321210


Q ss_pred             cCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEEE
Q 024465          148 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  220 (267)
Q Consensus       148 ~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~  220 (267)
                                                   ..|.+++   +...|.+.+.   .+||+.+++.++|++.|+||....
T Consensus       366 -----------------------------~~v~v~~---~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          366 -----------------------------DSIEIHP---NMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             -----------------------------SEEEEEE---EEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             -----------------------------CcEEEeC---CeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence                                         0122222   4678888776   589999999999999999998765

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=88.92  E-value=1.4  Score=41.50  Aligned_cols=48  Identities=19%  Similarity=0.361  Sum_probs=43.2

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  234 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v  234 (267)
                      ...+|-+.-.|.||.|..|+.+|+++|+||......|.|+-+-.+.-|
T Consensus       342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~  389 (416)
T 3k5p_A          342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA  389 (416)
T ss_dssp             SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence            467999999999999999999999999999999999999987665555

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=88.34  E-value=1.3  Score=41.44  Aligned_cols=48  Identities=15%  Similarity=0.169  Sum_probs=40.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEE
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI  119 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I  119 (267)
                      ++..+.+.-+|+||.+..|..+|.++|+||-.-.+.+.++.++-.+-+
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            456788999999999999999999999999999999966666544444

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=87.80  E-value=0.84  Score=43.07  Aligned_cols=68  Identities=12%  Similarity=0.223  Sum_probs=50.1

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCC-eeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVSYGGAALNSSLSQVLVNCLRYY  256 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~-~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~  256 (267)
                      ..+.|-+...|+||-|+++-..|+.+|||+++.+.-.... ...=.|||.-.  ...++..+++.+.|...
T Consensus        33 dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e--h~~d~~v~~AL~eL~~~  101 (429)
T 1phz_A           33 GAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD--KRTKPVLGSIIKSLRND  101 (429)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC--GGGHHHHHHHHHHHHHT
T ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe--eCCCHHHHHHHHHHHhh
Confidence            4677777788999999999999999999999999866654 45667888326  33455445555555544

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=87.48  E-value=2.9  Score=40.15  Aligned_cols=42  Identities=17%  Similarity=0.261  Sum_probs=37.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe
Q 024465           71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV  112 (267)
Q Consensus        71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~  112 (267)
                      ..+..+.+.-.|+||.+..++..|.++|+||-..++.....+
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~  493 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEG  493 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSS
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCC
Confidence            456788899999999999999999999999999999886543

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=87.26  E-value=3.8  Score=39.39  Aligned_cols=121  Identities=15%  Similarity=0.213  Sum_probs=76.1

Q ss_pred             CCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCC-ChHHHHHHHHHHHHHhh
Q 024465           71 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVE-DPDLLERIRLTIINNLL  146 (267)
Q Consensus        71 ~~~t~V~V~~---~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~-~~~~~erl~~~L~~~L~  146 (267)
                      ++.+.|+|.+   .++||.++++..+|.+.|++|..-.  +...  --+|.|... +..... ..+.++++...    |.
T Consensus       339 ~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~--sse~--sis~~v~~~-~~~~~~~~~~~l~~~~~e----l~  409 (510)
T 2cdq_A          339 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--TSEV--SISLTLDPS-KLWSRELIQQELDHVVEE----LE  409 (510)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--EETT--EEEEEECCG-GGSSSCCCHHHHHHHHHH----HT
T ss_pred             CCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE--eCCC--eEEEEEech-HhhhhhHHHHHHHHHHHH----hC
Confidence            4778999986   7899999999999999999998863  2222  234777542 211100 01222222222    21


Q ss_pred             ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC--CcccHHHHHHHHHHhCCccEEEEEEEec
Q 024465          147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTE  224 (267)
Q Consensus       147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~--DRpGLL~~Itr~l~~~gl~I~~a~i~T~  224 (267)
                      ..                            ..|.+++   +...|.+.+.  ..||+.+++..+|++.|+||....   .
T Consensus       410 ~~----------------------------~~v~~~~---~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIs---q  455 (510)
T 2cdq_A          410 KI----------------------------AVVNLLK---GRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMIS---Q  455 (510)
T ss_dssp             TT----------------------------SEEEEEE---EEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEE---E
T ss_pred             CC----------------------------CeEEEeC---CcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEE---e
Confidence            10                            0122222   3667777776  779999999999999999998764   5


Q ss_pred             CCeeee-EEEE
Q 024465          225 GLVAKD-KFHV  234 (267)
Q Consensus       225 g~~a~d-~F~v  234 (267)
                      |..-.+ .|.|
T Consensus       456 GsSei~Is~vV  466 (510)
T 2cdq_A          456 GASKVNISFIV  466 (510)
T ss_dssp             CTTCSEEEEEE
T ss_pred             cCCcceEEEEE
Confidence            544444 4555

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=85.86  E-value=0.81  Score=43.37  Aligned_cols=35  Identities=29%  Similarity=0.566  Sum_probs=30.0

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEE
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEI  221 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i  221 (267)
                      ..+-|.+...|+||.|++|+.+|.++|++|.+.-=
T Consensus       358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q  392 (444)
T 3mtj_A          358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQ  392 (444)
T ss_dssp             EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEee
Confidence            36677888999999999999999999999988753

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=84.18  E-value=4  Score=32.83  Aligned_cols=34  Identities=12%  Similarity=0.115  Sum_probs=31.0

Q ss_pred             CCeEEEEEEeCC---CccHHHHHHHHHHHCCceEEEE
Q 024465           71 SDATIVQLSFGD---RLGALIDTMNALKDLGLDVAKG  104 (267)
Q Consensus        71 ~~~t~V~V~~~D---RpGLL~di~~~L~~~~lnI~~A  104 (267)
                      ++...|.|.+.+   +||.++++..+|.+.|+||..-
T Consensus       101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A          101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence            477899999987   9999999999999999999883

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	0.004

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 33.2 bits (76), Expect = 0.004
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT 223
           L I   ++ G+L ++  IIA+   ++  A+   
Sbjct: 4   LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFL 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.7
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.51
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.5
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.32
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.15
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	98.04
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.9
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.77
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.62
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.6
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.52
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.49
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.45
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.37
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.21
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.18
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.06
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	96.97
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.94
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.93
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.78
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.73
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.7
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.45
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	92.54
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	92.07
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	87.78
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	86.1
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	84.03
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	81.89

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.70  E-value=7.9e-08  Score=69.87  Aligned_cols=64  Identities=14%  Similarity=0.205  Sum_probs=53.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      .+.+|+|.|+||||++++++++|+++|+||.+++..+.++.+.-.+.|.-    .    ++.+++|+..|..
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~----~----~~~~~~l~~~L~~   67 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG----S----PSNITRVETTLPL   67 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE----C----HHHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEc----C----cccHHHHHHHHHH
Confidence            57899999999999999999999999999999999999998876566643    1    3456777777665

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.51  E-value=5.2e-07  Score=64.78  Aligned_cols=63  Identities=13%  Similarity=0.166  Sum_probs=50.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      ++|+|.|+||||++++++++|+++|+||.+.+.++.++.+.-.+.+.-+ .+.   +   .++|++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~-~~~---~---~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EKQ---D---FTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SCC---C---HHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe-cCC---C---HHHHHHHHHH
Confidence            5799999999999999999999999999999999998877656666653 221   1   3556666654

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.50  E-value=5e-07  Score=65.45  Aligned_cols=49  Identities=16%  Similarity=0.302  Sum_probs=45.3

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      ++++|.+.|+||||++++|+++|+++|+||..++..+.++...-.+.|+
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~   52 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS   52 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEE
Confidence            5889999999999999999999999999999999999999877777775

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.32  E-value=1.8e-06  Score=61.83  Aligned_cols=47  Identities=13%  Similarity=0.204  Sum_probs=39.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      ++|.+.|+||||++++||.+|+++|+||....-.+.++.-.-.+.+.
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~   49 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVS   49 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEE
Confidence            67899999999999999999999999999999888776544444443

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.15  E-value=2.6e-06  Score=62.42  Aligned_cols=48  Identities=21%  Similarity=0.409  Sum_probs=38.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCC----eeeeEEEEE
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL----VAKDKFHVS  235 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~----~a~d~F~v~  235 (267)
                      .+.+.|.|+|||||+++||++|+++|+||..+.-.|...    ...+.|..+
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~   57 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIA   57 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEE
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEE
Confidence            456788999999999999999999999999999888653    345567765

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=1.7e-05  Score=56.18  Aligned_cols=62  Identities=19%  Similarity=0.337  Sum_probs=48.4

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHH
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVN  251 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v~d~G~~l~~~~~~~L~~  251 (267)
                      ++..|.+.-.|+||+|+.|+.+|.++|+||....+.+.  |+.|.-++.+  + .+++++.+++|++
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v--D-~~~~~~vl~~I~~   65 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--D-QDVPDDVRTAIAA   65 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--S-SCCCHHHHHHHHH
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc--C-CCccHHHHHHHHc
Confidence            47788899999999999999999999999999998775  4445554444  3 3566666666655

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.90  E-value=1.9e-05  Score=57.65  Aligned_cols=37  Identities=16%  Similarity=0.107  Sum_probs=33.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  110 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~  110 (267)
                      ..|.|.|+||||++++++++|+++|+||.+.+-.+..
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~   43 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS   43 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhccccc
Confidence            4788999999999999999999999999998877654

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.77  E-value=3.4e-05  Score=53.68  Aligned_cols=46  Identities=20%  Similarity=0.197  Sum_probs=42.0

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  235 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~  235 (267)
                      +|.|..+||||-|++++++|.+.|+||+.+.+...++++.-+|.+.
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vd   46 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS   46 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEEC
Confidence            4778899999999999999999999999999988889998888883

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.62  E-value=0.00015  Score=50.26  Aligned_cols=46  Identities=17%  Similarity=0.129  Sum_probs=41.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEE
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT  120 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~  120 (267)
                      +|.|..+|+||-|++++.+|.+.|+||.....+..++...-.|.+.
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vd   46 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS   46 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEEC
Confidence            5788999999999999999999999999999999998877666664

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.60  E-value=2e-05  Score=55.72  Aligned_cols=50  Identities=18%  Similarity=0.121  Sum_probs=34.9

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec-CCeeee--EEEEEeCC
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKD--KFHVSYGG  238 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~-g~~a~d--~F~v~d~G  238 (267)
                      .-|.|.+.||||+|++|+.+|+++|+||......+. .+.+..  .|++.+.+
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~   54 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG   54 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCc
Confidence            357899999999999999999999999999988764 334444  55554433

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.52  E-value=8.7e-05  Score=52.25  Aligned_cols=48  Identities=8%  Similarity=0.118  Sum_probs=35.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee---EEEEEEEe
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK---QTKFFITR  121 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~---~d~F~I~~  121 (267)
                      +-+.|.|.||||+|++++.+|++++.||......+..++.   .-.+++..
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            3578999999999999999999999999999988866654   23455544

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.49  E-value=0.00032  Score=48.50  Aligned_cols=45  Identities=7%  Similarity=0.172  Sum_probs=40.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEE
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI  119 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I  119 (267)
                      +++|...||||.|++++++|.+.|+||..-.+..+.+..+-.+.+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            689999999999999999999999999999998888877655544

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.45  E-value=0.00018  Score=49.73  Aligned_cols=45  Identities=20%  Similarity=0.220  Sum_probs=40.1

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  234 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v  234 (267)
                      .|.|...||||.|++|+.+|++.|+||.+..+....+.+.-.|.+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            377889999999999999999999999999998878887777755

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00078  Score=47.79  Aligned_cols=48  Identities=21%  Similarity=0.320  Sum_probs=40.7

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465          187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  234 (267)
Q Consensus       187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v  234 (267)
                      ....|.+.-.|+||.|++|+.+|+++|+||......+.++.+..+-.+
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i   57 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI   57 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEE
Confidence            356778889999999999999999999999999999888766554434

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=0.0017  Score=45.40  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=35.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee
Q 024465           73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK  113 (267)
Q Consensus        73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~  113 (267)
                      +..+.+.-.|+||.+.+++.+|.+.|+||....+.+...+-
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~   43 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGP   43 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSS
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCC
Confidence            45788889999999999999999999999999998766543

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=0.0006  Score=48.07  Aligned_cols=51  Identities=12%  Similarity=0.311  Sum_probs=41.2

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCC
Q 024465          188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG  238 (267)
Q Consensus       188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G  238 (267)
                      ...|.+...|+||+|++|+..|+..|+||.+..+..........+-+.-.|
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g   53 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG   53 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc
Confidence            357889999999999999999999999999999977766655545444333

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.0011  Score=46.40  Aligned_cols=64  Identities=11%  Similarity=0.208  Sum_probs=47.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 024465          190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  256 (267)
Q Consensus       190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~  256 (267)
                      .|.+...|+||+|++|+.+|+..|+||.+..+..........|-+.-.|.   +...+++.+-|.+.
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~---~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD---EKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC---HHHHHHHHHHHHHS
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECC---HHHHHHHHHHHhCC
Confidence            57788899999999999999999999999999866665555555544442   33455566555543

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=96.97  E-value=0.0014  Score=46.13  Aligned_cols=63  Identities=16%  Similarity=0.273  Sum_probs=46.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII  142 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~  142 (267)
                      ..+.+...|+||.|.++++.|+..||||.+-.+..+.+.-.-.+.|.-  +|.    ++..+++.+.|.
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv--~g~----~~~i~qi~kQl~   66 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMV--KGD----DKTIEQIEKQAY   66 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEE--EEC----TTHHHHHHHHHT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEE--EcC----HHHHHHHHHHHh
Confidence            478999999999999999999999999999998877765443344333  232    245666666644

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.0017  Score=45.36  Aligned_cols=63  Identities=21%  Similarity=0.343  Sum_probs=48.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      .+++...|+||.|+++++.|+..||||.+-.+.-+.+.-+-.|.|.-  .|    +++.++++.+.|..
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv--~~----~~~~i~qi~kQL~K   65 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQT--VG----DEKVLEQIEKQLHK   65 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEE--ES----CHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEE--EC----CHHHHHHHHHHHhC
Confidence            67899999999999999999999999999999866654443444443  23    24667777777665

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.93  E-value=0.0013  Score=46.11  Aligned_cols=65  Identities=9%  Similarity=0.204  Sum_probs=45.9

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 024465          189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  256 (267)
Q Consensus       189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~  256 (267)
                      ..|.+...|+||.|++|+..|+..|+||.+..+..........+-+.-.|.   +...+++.+-|.+.
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~---~~~i~qi~kQL~Kl   67 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP---DEIVEQITKQLNKL   67 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC---HHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECC---HHHHHHHHHHHhCC
Confidence            467888999999999999999999999999999755544443333332332   33455666655543

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.78  E-value=0.0019  Score=45.30  Aligned_cols=64  Identities=16%  Similarity=0.291  Sum_probs=47.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465           74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  143 (267)
Q Consensus        74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~  143 (267)
                      ..+.+...|+||.|+++++.|+..||||.+-.+..+.+.-+-.+.+.-  .|    +++.++++.+.|..
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv--~~----~~~~i~qi~kQL~K   66 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVT--NG----PDEIVEQITKQLNK   66 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEE--EE----CHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEE--EC----CHHHHHHHHHHHhC
Confidence            368899999999999999999999999999999866554332333332  23    24567777777665

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.73  E-value=0.0015  Score=47.73  Aligned_cols=70  Identities=11%  Similarity=0.228  Sum_probs=52.7

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 024465          186 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRYYL  257 (267)
Q Consensus       186 s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l  257 (267)
                      ...+.|-+...|+||.|+++-..|+++|||+.+.+.-...+. ..=.|||.-+|..  ++..+.+...|...+
T Consensus        14 ~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~--~~~i~~~l~~L~~~~   84 (97)
T d1phza1          14 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRT--KPVLGSIIKSLRNDI   84 (97)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGG--HHHHHHHHHHHHHTT
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCC--hHHHHHHHHHHHHhh
Confidence            347888888999999999999999999999999998765544 4557888437762  444555555555433

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.01  Score=41.73  Aligned_cols=48  Identities=15%  Similarity=0.169  Sum_probs=39.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEE
Q 024465           72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI  119 (267)
Q Consensus        72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I  119 (267)
                      +...+.|.-+|+||.+++|+.+|.+.|+||-.-...+.+++.+....+
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i   57 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI   57 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEE
Confidence            335788888999999999999999999999999998888766543333

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.45  E-value=0.0079  Score=42.09  Aligned_cols=60  Identities=20%  Similarity=0.294  Sum_probs=43.7

Q ss_pred             EEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465          193 IETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLR  254 (267)
Q Consensus       193 i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l~~~~~~~L~~~L~  254 (267)
                      ....|+||.|+++-..|+++|+|+++.+.....++ -.=.|||.-+|.. .+. .+.+.+.|.
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~-~~~-~~~~l~~L~   67 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAI-TTD-IKKVIAILE   67 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCS-CHH-HHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCC-cHH-HHHHHHHHH
Confidence            34569999999999999999999999998766555 5557888557753 443 344444443

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.54  E-value=0.16  Score=36.44  Aligned_cols=56  Identities=14%  Similarity=0.253  Sum_probs=40.7

Q ss_pred             CCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-eEEEEEEEeCCCCC
Q 024465           69 SNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR  126 (267)
Q Consensus        69 ~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~-~~d~F~I~~~~~g~  126 (267)
                      +..+-+-|.+..+|+||.|+++...|.++|+|+.+-.-.-.... ..-.|||.-  +|.
T Consensus        12 ~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~--eg~   68 (97)
T d1phza1          12 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL--DKR   68 (97)
T ss_dssp             CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB--CGG
T ss_pred             CCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc--ccC
Confidence            34456777778899999999999999999999876655444332 233488864  564

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.07  E-value=0.71  Score=31.50  Aligned_cols=49  Identities=12%  Similarity=0.205  Sum_probs=36.1

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCC
Q 024465           76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGR  126 (267)
Q Consensus        76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~  126 (267)
                      +.+.-.|+||.|+++-..|.+.|+|+-+-.-.-.+... .-.|||.-  +|.
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~--~g~   54 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA--DSA   54 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE--SCC
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ecC
Confidence            34445799999999999999999999876655444422 34588876  465

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=87.78  E-value=1  Score=29.61  Aligned_cols=46  Identities=11%  Similarity=0.145  Sum_probs=33.5

Q ss_pred             EEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe
Q 024465           74 TIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  121 (267)
Q Consensus        74 t~V~V~~---~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~  121 (267)
                      ..|++.+   +++||+.+++..+|.+.|+||.--.-.+..  .--.|.|.+
T Consensus         2 a~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se--~~Is~~V~~   50 (67)
T d2hmfa2           2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSE--VNISFVIDE   50 (67)
T ss_dssp             EEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCS--SEEEEEEEG
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCcc--ceEEEEEeH
Confidence            3567776   699999999999999999999864443332  223477765

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=86.10  E-value=0.88  Score=32.26  Aligned_cols=49  Identities=8%  Similarity=0.117  Sum_probs=36.9

Q ss_pred             CCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe
Q 024465           71 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  121 (267)
Q Consensus        71 ~~~t~V~V~~---~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~  121 (267)
                      ++...|+|.+   +++||+.+++..+|.+.|+||.--.-.+..  .--.|.|..
T Consensus        13 ~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se--~~Isf~V~~   64 (100)
T d2hmfa3          13 KNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVSE   64 (100)
T ss_dssp             EEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEECS
T ss_pred             CCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCc--ceEEEEEeH
Confidence            3678999988   799999999999999999999875443332  223466743

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.03  E-value=0.86  Score=31.80  Aligned_cols=34  Identities=18%  Similarity=0.468  Sum_probs=30.3

Q ss_pred             CeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEEE
Q 024465          187 KRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  220 (267)
Q Consensus       187 ~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~  220 (267)
                      +-+.|.+.+.   ++||++++|..+|+++|+||....
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            4678888764   999999999999999999999886

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.89  E-value=0.63  Score=32.54  Aligned_cols=47  Identities=15%  Similarity=0.288  Sum_probs=35.9

Q ss_pred             CCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe
Q 024465           71 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  121 (267)
Q Consensus        71 ~~~t~V~V~~---~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~  121 (267)
                      ++.+.|+|.+   .++||.++++..+|.+.|+||.--.  +...  --.|.|..
T Consensus        11 ~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is--~Se~--~is~~v~~   60 (91)
T d2cdqa2          11 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--TSEV--SISLTLDP   60 (91)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--EETT--EEEEEECC
T ss_pred             CCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE--ecCC--eEEEEEch
Confidence            3678999986   5999999999999999999998765  2222  22466654