Citrus Sinensis ID: 024480
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 267 | 2.2.26 [Sep-21-2011] | |||||||
| Q2JS42 | 254 | Uridylate kinase OS=Synec | yes | no | 0.883 | 0.929 | 0.648 | 1e-88 | |
| Q10Y48 | 244 | Uridylate kinase OS=Trich | yes | no | 0.898 | 0.983 | 0.634 | 3e-88 | |
| P74457 | 260 | Uridylate kinase OS=Synec | N/A | no | 0.887 | 0.911 | 0.646 | 1e-87 | |
| Q2JJE2 | 253 | Uridylate kinase OS=Synec | yes | no | 0.876 | 0.924 | 0.649 | 2e-87 | |
| Q3MFI4 | 242 | Uridylate kinase OS=Anaba | yes | no | 0.883 | 0.975 | 0.628 | 4e-85 | |
| Q8YXK5 | 242 | Uridylate kinase OS=Nosto | yes | no | 0.883 | 0.975 | 0.628 | 4e-85 | |
| Q2IMM2 | 251 | Uridylate kinase OS=Anaer | yes | no | 0.891 | 0.948 | 0.610 | 1e-84 | |
| Q7V6C2 | 237 | Uridylate kinase OS=Proch | yes | no | 0.865 | 0.974 | 0.642 | 1e-84 | |
| Q3AV98 | 237 | Uridylate kinase OS=Synec | yes | no | 0.872 | 0.983 | 0.645 | 1e-84 | |
| A2C7Q3 | 237 | Uridylate kinase OS=Proch | yes | no | 0.865 | 0.974 | 0.637 | 3e-84 |
| >sp|Q2JS42|PYRH_SYNJA Uridylate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pyrH PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 325 bits (834), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 153/236 (64%), Positives = 189/236 (80%)
Query: 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 81
K++R+LLK+SGEAL G+ IDP++ +IA EVASV R G++VAIVVGGGNI+RG A
Sbjct: 2 KYRRILLKLSGEALMGERPYGIDPEVLQSIASEVASVVRAGVQVAIVVGGGNIWRGRKEA 61
Query: 82 GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 141
G+D++SADY+GMLATV+NA+ LQ +E GIPTRVQTA M EVAEPYIRRRA+RHL
Sbjct: 62 AAQGMDQASADYVGMLATVINALTLQDAIERAGIPTRVQTAIAMQEVAEPYIRRRAIRHL 121
Query: 142 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 201
EKGRVVIF AG+GNPFFTTDT AALR AEI+AEV+ KAT VDGVYD +P+ +P AR D
Sbjct: 122 EKGRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVIFKATKVDGVYDADPKTHPQARRYDV 181
Query: 202 LTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257
L+YQ+V ++DL VMD TAI LC+EN +P+VVF+L PGNI + +QGE +GT IG T
Sbjct: 182 LSYQDVLTRDLRVMDSTAIALCKENQLPIVVFDLTTPGNIYRVVQGEPIGTWIGQT 237
|
Catalyzes the reversible phosphorylation of UMP to UDP. Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327) EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 2EC: 2 |
| >sp|Q10Y48|PYRH_TRIEI Uridylate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=pyrH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (832), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 153/241 (63%), Positives = 189/241 (78%), Gaps = 1/241 (0%)
Query: 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG 82
+QRVLLK+SGEAL G IDP + IA+EVA V GI++AIVVGGGNIFRG AA
Sbjct: 5 YQRVLLKLSGEALMGSLGYGIDPAVVQGIAQEVAEVAATGIQIAIVVGGGNIFRGVKAA- 63
Query: 83 NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 142
+ G+DR++ADY+GM+ATVMNAI LQ +E +G+PTRVQTA M E+AEPYIRRRA+RHLE
Sbjct: 64 SKGMDRATADYVGMIATVMNAITLQDALEQVGVPTRVQTAIAMQELAEPYIRRRAIRHLE 123
Query: 143 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL 202
KGRVV+F AG+GNPFFTTDT AALR AEI AEV+ KAT VDGVYD +P +N A+ ++L
Sbjct: 124 KGRVVVFGAGSGNPFFTTDTTAALRAAEIEAEVIFKATKVDGVYDSDPHKNQEAKRYESL 183
Query: 203 TYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTV 262
+Y EV + DL VMD TAI LC+ENNIP++VFNL+ GNI KA+ GE++GT++GG S
Sbjct: 184 SYGEVLTLDLRVMDSTAIALCKENNIPIIVFNLSVSGNICKAVMGEKIGTIVGGFHESKR 243
Query: 263 S 263
S
Sbjct: 244 S 244
|
Catalyzes the reversible phosphorylation of UMP to UDP. Trichodesmium erythraeum (strain IMS101) (taxid: 203124) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 2 |
| >sp|P74457|PYRH_SYNY3 Uridylate kinase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=pyrH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (826), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 157/243 (64%), Positives = 191/243 (78%), Gaps = 6/243 (2%)
Query: 13 DNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG 72
D GMS +QRVLLK+SGEAL GD IDP + IA+E+ V + G+++AIVVGGG
Sbjct: 18 DGGMS-----YQRVLLKLSGEALMGDLGYGIDPAVVGTIAQEIKDVLQAGVQLAIVVGGG 72
Query: 73 NIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY 132
NIFRG A+ +G+DR++ADYIGM+ATVMNA+ LQ +E + IPTRV TA M EVAEPY
Sbjct: 73 NIFRGVKASA-AGMDRATADYIGMIATVMNAMTLQDALEQMDIPTRVLTAIAMQEVAEPY 131
Query: 133 IRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRR 192
IRRRA+RHLEKGRVVIF AG+GNPFFTTDT AALR AEI+AEVV KAT VDGVYD +P+
Sbjct: 132 IRRRAIRHLEKGRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVVFKATKVDGVYDSDPKT 191
Query: 193 NPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGT 252
NPNAR TLTY V ++DL VMD TAI LC++NNIP+++F+L PGNI +AI+GE VGT
Sbjct: 192 NPNARRFTTLTYSHVLAEDLKVMDSTAIALCKDNNIPIMIFDLGVPGNIVRAIKGEAVGT 251
Query: 253 LIG 255
L+G
Sbjct: 252 LVG 254
|
Catalyzes the reversible phosphorylation of UMP to UDP. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 2 |
| >sp|Q2JJE2|PYRH_SYNJB Uridylate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=pyrH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (826), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 152/234 (64%), Positives = 188/234 (80%)
Query: 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 81
K++R+LLK+SGEAL G+ IDP++ +IA EVASV R G++VAIVVGGGNI+RG A
Sbjct: 2 KYRRILLKLSGEALMGERPYGIDPEVLKSIAGEVASVVRAGVQVAIVVGGGNIWRGRKEA 61
Query: 82 GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 141
G+D++SADY+GMLATV+NA+ LQ +E GIPTRVQTA M EVAEPYIRRRA+RHL
Sbjct: 62 AAQGMDQASADYVGMLATVINALTLQDAIERAGIPTRVQTAIAMQEVAEPYIRRRAIRHL 121
Query: 142 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 201
EKGRVVIF AG+GNPFFTTDT AALR AEI+AEV+ KAT VDGVYD +P+ +P AR D
Sbjct: 122 EKGRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVIFKATKVDGVYDADPKTHPQARRYDV 181
Query: 202 LTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255
L+YQ+V ++DL VMD TAI LC+EN +P+VVF+L PGNI + +QGE +GT IG
Sbjct: 182 LSYQDVLNRDLRVMDSTAIALCKENQLPIVVFDLTTPGNIYRVVQGEPIGTWIG 235
|
Catalyzes the reversible phosphorylation of UMP to UDP. Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 2 |
| >sp|Q3MFI4|PYRH_ANAVT Uridylate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pyrH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 314 bits (805), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 149/237 (62%), Positives = 190/237 (80%), Gaps = 1/237 (0%)
Query: 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG 82
++RVLLK+SGEAL G+ IDP++ IA+E+A V G+++AIVVGGGNIFRG AA
Sbjct: 5 YRRVLLKLSGEALMGNMGYGIDPEVVKEIAQEIAEVIATGVQIAIVVGGGNIFRGVKAA- 63
Query: 83 NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 142
++G+DR++ADYIGM+ATVMNA+ LQ ++E IG+ TRVQTA M E+AEPYIRRRA+RHLE
Sbjct: 64 SAGMDRATADYIGMIATVMNAMTLQDSLERIGVQTRVQTAIAMQELAEPYIRRRAIRHLE 123
Query: 143 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL 202
KGRVVIF AG+GNPFFTTDT AALR AEI+AEV+ KAT VDGVYD +P PNA+ ++L
Sbjct: 124 KGRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVIFKATKVDGVYDADPEVYPNAKRYNSL 183
Query: 203 TYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 259
TY V ++DL VMD TAI LC+ENNIP++VF+L GNI +A+ GE +GTL+GG+
Sbjct: 184 TYAHVLAQDLRVMDSTAIALCKENNIPILVFDLTTRGNIRRAVLGESIGTLVGGSCE 240
|
Catalyzes the reversible phosphorylation of UMP to UDP. Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 2 |
| >sp|Q8YXK5|PYRH_NOSS1 Uridylate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=pyrH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 314 bits (805), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 149/237 (62%), Positives = 190/237 (80%), Gaps = 1/237 (0%)
Query: 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG 82
++RVLLK+SGEAL G+ IDP++ IA+E+A V G+++AIVVGGGNIFRG AA
Sbjct: 5 YRRVLLKLSGEALMGNMGYGIDPEVVKEIAQEIAEVIATGVQIAIVVGGGNIFRGVKAA- 63
Query: 83 NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 142
++G+DR++ADYIGM+ATVMNA+ LQ ++E IG+ TRVQTA M E+AEPYIRRRA+RHLE
Sbjct: 64 SAGMDRATADYIGMIATVMNAMTLQDSLERIGVQTRVQTAIAMQELAEPYIRRRAIRHLE 123
Query: 143 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL 202
KGRVVIF AG+GNPFFTTDT AALR AEI+AEV+ KAT VDGVYD +P PNA+ ++L
Sbjct: 124 KGRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVIFKATKVDGVYDADPEIYPNAKRYNSL 183
Query: 203 TYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 259
TY V ++DL VMD TAI LC+ENNIP++VF+L GNI +A+ GE +GTL+GG+
Sbjct: 184 TYAHVLAQDLRVMDSTAIALCKENNIPILVFDLTTRGNIRRAVLGESIGTLVGGSCE 240
|
Catalyzes the reversible phosphorylation of UMP to UDP. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 2 |
| >sp|Q2IMM2|PYRH_ANADE Uridylate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=pyrH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (801), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 146/239 (61%), Positives = 186/239 (77%), Gaps = 1/239 (0%)
Query: 17 SKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 76
S P ++QR+LLK+SGEAL GD I PK +IA +V V LG+EVA+ +GGGNIFR
Sbjct: 7 SNPKARYQRILLKLSGEALMGDGKYGISPKTLTSIAHDVKDVVDLGVEVALTIGGGNIFR 66
Query: 77 GASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRR 136
G S A G+DRSSADY+GMLATV+N++ LQ +E IG+PTRVQ+A M +VAEPYIRRR
Sbjct: 67 GVSGA-TEGMDRSSADYMGMLATVINSMALQDALEKIGVPTRVQSAIEMHQVAEPYIRRR 125
Query: 137 AVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA 196
A+RHLEKGRVVIFAAGTGNP+FTTDTAA+LR EI+A+V+LKAT VDGVY D+P++NP A
Sbjct: 126 AIRHLEKGRVVIFAAGTGNPYFTTDTAASLRAMEIHADVLLKATKVDGVYTDDPKKNPAA 185
Query: 197 RLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255
L+Y +V K+L VMD TAI+LC +N++P+VVF+L Q GN+ K + GE +GT +G
Sbjct: 186 TKFKQLSYIDVLKKNLKVMDSTAISLCMDNDLPIVVFDLTQRGNVRKVVLGEEIGTTVG 244
|
Catalyzes the reversible phosphorylation of UMP to UDP. Anaeromyxobacter dehalogenans (strain 2CP-C) (taxid: 290397) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 2 |
| >sp|Q7V6C2|PYRH_PROMM Uridylate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=pyrH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (800), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 149/232 (64%), Positives = 184/232 (79%), Gaps = 1/232 (0%)
Query: 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG 82
+ RVLLK+SGEAL GD + IDP I +IA +VA V G ++AIVVGGGNIFRG +
Sbjct: 3 YARVLLKLSGEALMGDQSYGIDPAIVQSIAEDVAKVVAKGTQLAIVVGGGNIFRGLKGSA 62
Query: 83 NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 142
+G+DR++ADY+GMLATVMNAI LQ +E G+PTRVQTA M EVAEPYIRRRA+RHLE
Sbjct: 63 -AGMDRATADYVGMLATVMNAITLQDGLERAGVPTRVQTAIEMQEVAEPYIRRRAIRHLE 121
Query: 143 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL 202
KGRVV+F G GNPFFTTDT A+LR AEINA+VV KAT VDGVYD +P+R P+A D+L
Sbjct: 122 KGRVVVFGGGCGNPFFTTDTTASLRAAEINADVVFKATKVDGVYDRDPKRFPDATRYDSL 181
Query: 203 TYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
T+Q+V S +L+VMD TAI LC++NNIP+VVF+L +PGNI KA+ GE +G+ I
Sbjct: 182 TFQQVLSGELAVMDSTAIALCKDNNIPIVVFDLFEPGNIGKAVAGEAIGSRI 233
|
Catalyzes the reversible phosphorylation of UMP to UDP. Prochlorococcus marinus (strain MIT 9313) (taxid: 74547) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 2 |
| >sp|Q3AV98|PYRH_SYNS9 Uridylate kinase OS=Synechococcus sp. (strain CC9902) GN=pyrH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (800), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 151/234 (64%), Positives = 185/234 (79%), Gaps = 1/234 (0%)
Query: 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 81
K+ RVLLK+SGEAL G IDP+I +IA +VA V G ++AIVVGGGNIFRG +
Sbjct: 2 KYTRVLLKLSGEALMGSQGYGIDPEIVHSIAEDVAKVVASGTQLAIVVGGGNIFRGLKGS 61
Query: 82 GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 141
+G+DR++ADY+GMLATVMNAI LQ +E G+PTRVQTA M EVAEPYIRR+A+RHL
Sbjct: 62 A-AGMDRATADYVGMLATVMNAITLQDGLERAGVPTRVQTAIAMQEVAEPYIRRKAMRHL 120
Query: 142 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 201
EKGRVV+F AG GNPFFTTDT AALR AEINA+VV KAT VDGVYD +P ++P+A D
Sbjct: 121 EKGRVVVFGAGCGNPFFTTDTTAALRAAEINADVVFKATKVDGVYDKDPAKHPDAVKHDH 180
Query: 202 LTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255
L+YQ+V S +L VMD TAI+LC+ENNIP+VVF+L +PGNI KA+ GE +G+ IG
Sbjct: 181 LSYQDVLSGELGVMDATAISLCKENNIPIVVFDLFEPGNIGKAVAGEPIGSRIG 234
|
Catalyzes the reversible phosphorylation of UMP to UDP. Synechococcus sp. (strain CC9902) (taxid: 316279) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 2 |
| >sp|A2C7Q3|PYRH_PROM3 Uridylate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=pyrH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 311 bits (797), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 148/232 (63%), Positives = 184/232 (79%), Gaps = 1/232 (0%)
Query: 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG 82
+ RVLLK+SGEAL GD + IDP I +IA +VA V G ++AIVVGGGNIFRG +
Sbjct: 3 YARVLLKLSGEALMGDQSYGIDPAIVQSIAEDVAKVVAKGTQLAIVVGGGNIFRGLKGSA 62
Query: 83 NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 142
+G+DR++ADY+GMLATVMNAI LQ +E G+ TRVQTA M EVAEPYIRRRA+RHLE
Sbjct: 63 -AGMDRATADYVGMLATVMNAITLQDGLERAGVATRVQTAIEMQEVAEPYIRRRAIRHLE 121
Query: 143 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL 202
KGRVV+F G GNPFFTTDT A+LR AEINA+VV KAT VDGVYD +P+R P+A+ D+L
Sbjct: 122 KGRVVVFGGGCGNPFFTTDTTASLRAAEINADVVFKATKVDGVYDRDPKRFPDAKRYDSL 181
Query: 203 TYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
T+Q+V S +L+VMD TAI LC++NNIP+VVF+L +PGNI KA+ GE +G+ I
Sbjct: 182 TFQQVLSGELAVMDSTAIALCKDNNIPIVVFDLFEPGNIGKAVAGEAIGSRI 233
|
Catalyzes the reversible phosphorylation of UMP to UDP. Prochlorococcus marinus (strain MIT 9303) (taxid: 59922) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 267 | ||||||
| 225431539 | 332 | PREDICTED: uridylate kinase-like [Vitis | 0.992 | 0.798 | 0.883 | 1e-135 | |
| 255552374 | 328 | Uridylate kinase, putative [Ricinus comm | 0.985 | 0.801 | 0.894 | 1e-135 | |
| 449461831 | 341 | PREDICTED: uridylate kinase-like [Cucumi | 0.992 | 0.777 | 0.883 | 1e-134 | |
| 356512819 | 331 | PREDICTED: uridylate kinase-like [Glycin | 0.985 | 0.794 | 0.879 | 1e-133 | |
| 356525588 | 325 | PREDICTED: uridylate kinase-like [Glycin | 0.981 | 0.806 | 0.875 | 1e-133 | |
| 255637835 | 325 | unknown [Glycine max] | 0.981 | 0.806 | 0.859 | 1e-131 | |
| 15230160 | 339 | uridylate kinase [Arabidopsis thaliana] | 0.943 | 0.743 | 0.904 | 1e-130 | |
| 296088581 | 255 | unnamed protein product [Vitis vinifera] | 0.955 | 1.0 | 0.890 | 1e-130 | |
| 297830522 | 334 | aspartate/glutamate/uridylate kinase fam | 0.943 | 0.754 | 0.904 | 1e-130 | |
| 217074196 | 324 | unknown [Medicago truncatula] | 0.977 | 0.805 | 0.860 | 1e-130 |
| >gi|225431539|ref|XP_002281894.1| PREDICTED: uridylate kinase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/265 (88%), Positives = 252/265 (95%)
Query: 1 MSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR 60
+SSM+P GVT+ND GMSKPS KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR
Sbjct: 68 LSSMTPLGVTMNDAGMSKPSCKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR 127
Query: 61 LGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 120
LGIEVAIVVGGGNIFRG+S AG+ GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ
Sbjct: 128 LGIEVAIVVGGGNIFRGSSWAGSGGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 187
Query: 121 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 180
TAFRMSEVAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT
Sbjct: 188 TAFRMSEVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 247
Query: 181 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGN 240
NVDGV+DD+PRRNPNARLLD+LTYQ+V S+DLSVMDMTA+TLCQENNIPVVVFN+ + GN
Sbjct: 248 NVDGVFDDDPRRNPNARLLDSLTYQDVLSRDLSVMDMTAVTLCQENNIPVVVFNVTKSGN 307
Query: 241 IAKAIQGERVGTLIGGTWNSTVSKT 265
I++AI GERVGTL+GG W ST + T
Sbjct: 308 ISRAILGERVGTLVGGPWVSTTAGT 332
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552374|ref|XP_002517231.1| Uridylate kinase, putative [Ricinus communis] gi|223543602|gb|EEF45131.1| Uridylate kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/265 (89%), Positives = 254/265 (95%), Gaps = 2/265 (0%)
Query: 1 MSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR 60
M+SM+ FG +N+ +S+PSYKWQRVLLKVSGEALAGD TQNIDPKITMAIAREVASVTR
Sbjct: 66 MTSMAAFG--MNETSLSRPSYKWQRVLLKVSGEALAGDRTQNIDPKITMAIAREVASVTR 123
Query: 61 LGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 120
LG+EVAIVVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ
Sbjct: 124 LGVEVAIVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 183
Query: 121 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 180
TAFRMSEVAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT
Sbjct: 184 TAFRMSEVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 243
Query: 181 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGN 240
NVDGVYDD+PR NPNARLLDTLT+ EVTSKDLSVMDMTAITLCQENNIPVVVFNL++PGN
Sbjct: 244 NVDGVYDDDPRHNPNARLLDTLTFHEVTSKDLSVMDMTAITLCQENNIPVVVFNLSEPGN 303
Query: 241 IAKAIQGERVGTLIGGTWNSTVSKT 265
I+KAI GERVGTLIGGT NSTV++T
Sbjct: 304 ISKAILGERVGTLIGGTRNSTVART 328
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461831|ref|XP_004148645.1| PREDICTED: uridylate kinase-like [Cucumis sativus] gi|449507502|ref|XP_004163050.1| PREDICTED: uridylate kinase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/265 (88%), Positives = 252/265 (95%)
Query: 1 MSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR 60
+S +SP G+T+++ MS PSYKW+RVLLKVSGEALAGD QNIDPK+TMAIAREVA+VTR
Sbjct: 77 ISCISPGGMTISEASMSMPSYKWRRVLLKVSGEALAGDRLQNIDPKVTMAIAREVAAVTR 136
Query: 61 LGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 120
LGIEVAIVVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ
Sbjct: 137 LGIEVAIVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 196
Query: 121 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 180
TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEV+LKAT
Sbjct: 197 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVLLKAT 256
Query: 181 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGN 240
NVDGVYDD+PR+NPNARLL+TLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL +P N
Sbjct: 257 NVDGVYDDDPRQNPNARLLETLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLTKPDN 316
Query: 241 IAKAIQGERVGTLIGGTWNSTVSKT 265
I KAI+GERVGTLIGGTWNS V+ T
Sbjct: 317 ITKAIKGERVGTLIGGTWNSMVAST 341
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512819|ref|XP_003525113.1| PREDICTED: uridylate kinase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/265 (87%), Positives = 254/265 (95%), Gaps = 2/265 (0%)
Query: 1 MSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR 60
+ SMS +++N++ SKPS+KW+RVLLKVSGEALAGDH+QNIDPKITMAIAREVA+VTR
Sbjct: 69 IPSMSHLRLSMNES--SKPSFKWRRVLLKVSGEALAGDHSQNIDPKITMAIAREVAAVTR 126
Query: 61 LGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 120
LGIEVA+VVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ
Sbjct: 127 LGIEVALVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 186
Query: 121 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 180
TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT
Sbjct: 187 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 246
Query: 181 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGN 240
NVDGV+D++P+RNP ARL +TLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLN+PGN
Sbjct: 247 NVDGVFDEDPKRNPQARLHETLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNKPGN 306
Query: 241 IAKAIQGERVGTLIGGTWNSTVSKT 265
I KAI+GERVGTLIG TWNSTVS+T
Sbjct: 307 IEKAIKGERVGTLIGATWNSTVSRT 331
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525588|ref|XP_003531406.1| PREDICTED: uridylate kinase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/264 (87%), Positives = 253/264 (95%), Gaps = 2/264 (0%)
Query: 1 MSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR 60
+ SMS +++N++ SKPS+KW+RVLLKVSGEALAGDH+QNIDPKITMAIAREVA+VTR
Sbjct: 63 IPSMSHLRLSMNES--SKPSFKWRRVLLKVSGEALAGDHSQNIDPKITMAIAREVAAVTR 120
Query: 61 LGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 120
LGIEVA+VVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ
Sbjct: 121 LGIEVALVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 180
Query: 121 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 180
TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT
Sbjct: 181 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 240
Query: 181 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGN 240
NVDGV+D++P+RNP ARL +TLTYQEVTSKDLSVMDMTAITLCQENNIPV+VFNLN+PGN
Sbjct: 241 NVDGVFDEDPKRNPQARLHETLTYQEVTSKDLSVMDMTAITLCQENNIPVIVFNLNKPGN 300
Query: 241 IAKAIQGERVGTLIGGTWNSTVSK 264
I KAI+GERVGTLIG TWNSTVS+
Sbjct: 301 IEKAIKGERVGTLIGATWNSTVSR 324
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255637835|gb|ACU19237.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/264 (85%), Positives = 249/264 (94%), Gaps = 2/264 (0%)
Query: 1 MSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR 60
+ SMS +++N++ SKPS+KW+RVLLKVSGEALAGDH+QNIDPKITMAIAREVA+VTR
Sbjct: 63 IPSMSHLRLSMNES--SKPSFKWRRVLLKVSGEALAGDHSQNIDPKITMAIAREVAAVTR 120
Query: 61 LGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 120
LGIEVA+VVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQATMESIG PTRVQ
Sbjct: 121 LGIEVALVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGTPTRVQ 180
Query: 121 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 180
TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT
Sbjct: 181 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 240
Query: 181 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGN 240
NVDGV+D++P+RNP AR +TLTYQEVTSKDLSVMDMTAITLCQENNIPV+VFN N+PGN
Sbjct: 241 NVDGVFDEDPKRNPQARFHETLTYQEVTSKDLSVMDMTAITLCQENNIPVIVFNFNKPGN 300
Query: 241 IAKAIQGERVGTLIGGTWNSTVSK 264
I KAI+GERVGTLIG TWN TVS+
Sbjct: 301 IEKAIKGERVGTLIGATWNFTVSR 324
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15230160|ref|NP_188498.1| uridylate kinase [Arabidopsis thaliana] gi|9293891|dbj|BAB01794.1| unnamed protein product [Arabidopsis thaliana] gi|15292789|gb|AAK92763.1| putative uridylate kinase [Arabidopsis thaliana] gi|20258857|gb|AAM14100.1| putative uridylate kinase [Arabidopsis thaliana] gi|332642610|gb|AEE76131.1| uridylate kinase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/252 (90%), Positives = 243/252 (96%)
Query: 14 NGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN 73
+G SKP KW+RVLLKVSGEALAGD QNIDPK+TMAIAREVA+VTRLGIEVAIVVGGGN
Sbjct: 87 DGTSKPPLKWRRVLLKVSGEALAGDEEQNIDPKVTMAIAREVAAVTRLGIEVAIVVGGGN 146
Query: 74 IFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYI 133
IFRG++ AG SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYI
Sbjct: 147 IFRGSTWAGCSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYI 206
Query: 134 RRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN 193
RRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGV+DD+P+RN
Sbjct: 207 RRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVFDDDPKRN 266
Query: 194 PNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 253
PNARLLD+LTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL++PGNIAKAI+GERVGTL
Sbjct: 267 PNARLLDSLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLSEPGNIAKAIKGERVGTL 326
Query: 254 IGGTWNSTVSKT 265
IGGTWNS V+ T
Sbjct: 327 IGGTWNSIVTTT 338
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088581|emb|CBI37572.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/255 (89%), Positives = 243/255 (95%)
Query: 11 LNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70
+ND GMSKPS KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG
Sbjct: 1 MNDAGMSKPSCKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 60
Query: 71 GGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE 130
GGNIFRG+S AG+ GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE
Sbjct: 61 GGNIFRGSSWAGSGGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE 120
Query: 131 PYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNP 190
PYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGV+DD+P
Sbjct: 121 PYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVFDDDP 180
Query: 191 RRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERV 250
RRNPNARLLD+LTYQ+V S+DLSVMDMTA+TLCQENNIPVVVFN+ + GNI++AI GERV
Sbjct: 181 RRNPNARLLDSLTYQDVLSRDLSVMDMTAVTLCQENNIPVVVFNVTKSGNISRAILGERV 240
Query: 251 GTLIGGTWNSTVSKT 265
GTL+GG W ST + T
Sbjct: 241 GTLVGGPWVSTTAGT 255
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297830522|ref|XP_002883143.1| aspartate/glutamate/uridylate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297830524|ref|XP_002883144.1| aspartate/glutamate/uridylate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297328983|gb|EFH59402.1| aspartate/glutamate/uridylate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297328984|gb|EFH59403.1| aspartate/glutamate/uridylate kinase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/252 (90%), Positives = 243/252 (96%)
Query: 14 NGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN 73
+G SKP KW+RVLLKVSGEALAGD QNIDPK+TMAIAREVA+VTRLGIEVAIVVGGGN
Sbjct: 82 DGASKPPLKWRRVLLKVSGEALAGDEEQNIDPKVTMAIAREVAAVTRLGIEVAIVVGGGN 141
Query: 74 IFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYI 133
IFRG++ AG SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYI
Sbjct: 142 IFRGSTWAGCSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYI 201
Query: 134 RRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN 193
RRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGV+DD+P+RN
Sbjct: 202 RRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVFDDDPKRN 261
Query: 194 PNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 253
PNARLLD+LTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL++PGNIAKAI+GERVGTL
Sbjct: 262 PNARLLDSLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLSEPGNIAKAIKGERVGTL 321
Query: 254 IGGTWNSTVSKT 265
IGGTWNS V+ T
Sbjct: 322 IGGTWNSIVTTT 333
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217074196|gb|ACJ85458.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/265 (86%), Positives = 249/265 (93%), Gaps = 4/265 (1%)
Query: 1 MSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR 60
+ SMSPF +++N++ SKP KW+RVLLKVSGEALAGD QNIDPK+TM+IAREVA+VTR
Sbjct: 64 IPSMSPFALSMNES--SKP--KWRRVLLKVSGEALAGDQAQNIDPKVTMSIAREVAAVTR 119
Query: 61 LGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 120
GIE A+VVGGGNIFRGAS AG+SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ
Sbjct: 120 HGIEGALVVGGGNIFRGASWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 179
Query: 121 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 180
TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT
Sbjct: 180 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 239
Query: 181 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGN 240
NVDGV+DD+P+RNP ARLLDTLTYQ+V KDLSVMD+TAITLCQENNIPVVVFNLN+PGN
Sbjct: 240 NVDGVFDDDPKRNPQARLLDTLTYQDVIKKDLSVMDLTAITLCQENNIPVVVFNLNKPGN 299
Query: 241 IAKAIQGERVGTLIGGTWNSTVSKT 265
I KAI+GERVGTLIG TWNST+S+T
Sbjct: 300 IEKAIKGERVGTLIGATWNSTISRT 324
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 267 | ||||||
| TAIR|locus:2093949 | 339 | AT3G18680 [Arabidopsis thalian | 0.992 | 0.781 | 0.867 | 1.4e-117 | |
| TIGR_CMR|CHY_1785 | 242 | CHY_1785 "uridylate kinase" [C | 0.887 | 0.979 | 0.606 | 1.7e-75 | |
| TIGR_CMR|GSU_1919 | 239 | GSU_1919 "uridylate kinase" [G | 0.891 | 0.995 | 0.572 | 7.7e-71 | |
| TIGR_CMR|BA_3963 | 240 | BA_3963 "uridylate kinase" [Ba | 0.891 | 0.991 | 0.566 | 1.7e-68 | |
| TIGR_CMR|DET_0375 | 241 | DET_0375 "uridylate kinase" [D | 0.868 | 0.962 | 0.555 | 2.6e-63 | |
| TIGR_CMR|CBU_1384 | 243 | CBU_1384 "uridylate kinase" [C | 0.887 | 0.975 | 0.514 | 1e-61 | |
| UNIPROTKB|P65929 | 261 | pyrH "Uridylate kinase" [Mycob | 0.861 | 0.881 | 0.525 | 1.6e-61 | |
| TIGR_CMR|SPO_1662 | 251 | SPO_1662 "uridylate kinase" [R | 0.895 | 0.952 | 0.524 | 3.4e-61 | |
| TIGR_CMR|ECH_0266 | 244 | ECH_0266 "uridylate kinase" [E | 0.891 | 0.975 | 0.495 | 8.1e-60 | |
| TAIR|locus:2100108 | 542 | AT3G10030 [Arabidopsis thalian | 0.913 | 0.450 | 0.511 | 1.2e-58 |
| TAIR|locus:2093949 AT3G18680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1158 (412.7 bits), Expect = 1.4e-117, P = 1.4e-117
Identities = 230/265 (86%), Positives = 248/265 (93%)
Query: 1 MSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR 60
++ S F + +G SKP KW+RVLLKVSGEALAGD QNIDPK+TMAIAREVA+VTR
Sbjct: 74 LNGQSSFPRLPSFDGTSKPPLKWRRVLLKVSGEALAGDEEQNIDPKVTMAIAREVAAVTR 133
Query: 61 LGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 120
LGIEVAIVVGGGNIFRG++ AG SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ
Sbjct: 134 LGIEVAIVVGGGNIFRGSTWAGCSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 193
Query: 121 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 180
TAFRMSEVAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT
Sbjct: 194 TAFRMSEVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 253
Query: 181 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGN 240
NVDGV+DD+P+RNPNARLLD+LTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL++PGN
Sbjct: 254 NVDGVFDDDPKRNPNARLLDSLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLSEPGN 313
Query: 241 IAKAIQGERVGTLIGGTWNSTVSKT 265
IAKAI+GERVGTLIGGTWNS V+ T
Sbjct: 314 IAKAIKGERVGTLIGGTWNSIVTTT 338
|
|
| TIGR_CMR|CHY_1785 CHY_1785 "uridylate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 145/239 (60%), Positives = 189/239 (79%)
Query: 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 77
PS K++RV+LK+SGEALAG+ IDP++ +IA ++A + + GI+VA+VVGGGNI+RG
Sbjct: 2 PSPKYKRVVLKLSGEALAGEKGYGIDPEVVNSIAGQIAEIIKEFGIQVAVVVGGGNIWRG 61
Query: 78 ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRA 137
S + G+DR++ADY+GMLATV+N++ LQ +E +GI TRVQTA M ++AEPYIRRRA
Sbjct: 62 LSGSAK-GMDRATADYMGMLATVINSLALQDALEKLGIDTRVQTAIEMRQIAEPYIRRRA 120
Query: 138 VRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNAR 197
+RHLEKGRVVIFAAGTGNP+F+TDT AALR AEI AEV+L A VDGVYD +P +NPNA+
Sbjct: 121 IRHLEKGRVVIFAAGTGNPYFSTDTTAALRAAEIEAEVILMAKRVDGVYDSDPLKNPNAQ 180
Query: 198 LLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256
D L Y EV ++ L VMD TA +LC +NNIP++VFNL PGNI + I GE +GT++GG
Sbjct: 181 KFDELEYIEVLNRGLGVMDSTATSLCMDNNIPLIVFNLEVPGNIKRVILGENIGTIVGG 239
|
|
| TIGR_CMR|GSU_1919 GSU_1919 "uridylate kinase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 138/241 (57%), Positives = 179/241 (74%)
Query: 16 MSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 75
M P Y RVLLK+SGEALAGD IDP+ AIA E+ V G ++A+V+GGGNIF
Sbjct: 1 MGTPYYG--RVLLKLSGEALAGDQGYGIDPRTITAIAAEIKEVVATGSQLALVIGGGNIF 58
Query: 76 RGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRR 135
RG AA + G+DR+SADY+GMLAT++N++ +Q +E +G+ TRVQ+A M EVAEPYIRR
Sbjct: 59 RGL-AASSKGMDRASADYMGMLATMINSLAMQDALEKVGVDTRVQSAIAMQEVAEPYIRR 117
Query: 136 RAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN 195
RA+RHLEKGR+VIF AGTGNP+FTTDTAA+LR EI A+V+LK T VDGVY +P+++P
Sbjct: 118 RAIRHLEKGRIVIFGAGTGNPYFTTDTAASLRAMEIGADVILKGTKVDGVYSADPKKDPT 177
Query: 196 ARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255
A LTY EV K L VMD TA +LC +NN+P++VF++ GNI K + GE +GT++
Sbjct: 178 AIKYPRLTYLEVLKKGLQVMDATATSLCMDNNLPIIVFDITTYGNIKKVVCGEEIGTIVK 237
Query: 256 G 256
G
Sbjct: 238 G 238
|
|
| TIGR_CMR|BA_3963 BA_3963 "uridylate kinase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 137/242 (56%), Positives = 183/242 (75%)
Query: 16 MSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 75
MSKP Y RV+LK+SGEALAG+ I+P + ++A +V + L +EVA+VVGGGNI+
Sbjct: 1 MSKPKYN--RVVLKLSGEALAGEQGFGINPAVIKSVAEQVKEIAELDVEVAVVVGGGNIW 58
Query: 76 RGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRR 135
RG G+DR+ ADY+GMLATVMN++ LQ ++E+IGI TRVQT+ M +VAEPYIRR
Sbjct: 59 RG-KIGSEMGMDRAGADYMGMLATVMNSLALQDSLENIGIQTRVQTSIEMRQVAEPYIRR 117
Query: 136 RAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA-TNVDGVYDDNPRRNP 194
+AVRHLEK RVVIFAAGTGNP+F+TDT AALR AEI A+V+L A NVDGVY+ +P +P
Sbjct: 118 KAVRHLEKKRVVIFAAGTGNPYFSTDTTAALRAAEIEADVILMAKNNVDGVYNADPSIDP 177
Query: 195 NARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
A +TLTY +V + L VMD TA +LC +N+IP++VF++ + GNI +A+ GE +GT++
Sbjct: 178 TATKYETLTYLDVLKEGLGVMDSTASSLCMDNDIPLIVFSVMEKGNIKRAVLGENIGTVV 237
Query: 255 GG 256
G
Sbjct: 238 RG 239
|
|
| TIGR_CMR|DET_0375 DET_0375 "uridylate kinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 130/234 (55%), Positives = 170/234 (72%)
Query: 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 81
K++R+LLK+SGEA G ID +IA E+ + +G+EVAIVVGGGNI+RGA+AA
Sbjct: 5 KYKRILLKLSGEAFKGATGYGIDIPTVRSIAHEIKHICLMGVEVAIVVGGGNIWRGATAA 64
Query: 82 GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 141
G+DR SADY GMLAT++NA+ LQ +E GI TR Q+A + +VAEPYI RRA+RHL
Sbjct: 65 -KEGIDRVSADYAGMLATIINALTLQDALEREGIVTRTQSALAVQQVAEPYICRRAIRHL 123
Query: 142 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLD 200
EKGRVVIFA GTGNP+ TTDTAAALR EI A+V+L A N VDGVY +P+++P A L
Sbjct: 124 EKGRVVIFAGGTGNPYMTTDTAAALRAIEIEADVLLMAKNKVDGVYTADPKKHPEATLFQ 183
Query: 201 TLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
LT+ E +K L VMD TA++LC +N +P++VF+L ++ AI G+ +GTLI
Sbjct: 184 HLTHMEAINKRLQVMDATALSLCLDNKLPIIVFDLQSSESLVSAISGQPIGTLI 237
|
|
| TIGR_CMR|CBU_1384 CBU_1384 "uridylate kinase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 124/241 (51%), Positives = 174/241 (72%)
Query: 14 NGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN 73
NG +P Y+ RVLLK+SGEAL G IDP + +A++V V +LG+++AIV+GGGN
Sbjct: 3 NG-PQPLYR--RVLLKMSGEALMGKGLHAIDPNVLDRMAKDVTQVYQLGVQIAIVIGGGN 59
Query: 74 IFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYI 133
FRGA+ +G++R + DY+GMLAT+MNA+ L+ E +P R+ +A M+ VA+ +
Sbjct: 60 FFRGAALQA-AGINRITGDYMGMLATLMNALALRDAFERSNLPVRILSAIPMTGVADAFH 118
Query: 134 RRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN 193
RR+A+ HL++GRVVIFAAGTGNP TTD+AA+LR EINA+VVLKATNVDGVY D+P +N
Sbjct: 119 RRKAIHHLQQGRVVIFAAGTGNPLVTTDSAASLRGIEINADVVLKATNVDGVYSDDPAKN 178
Query: 194 PNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 253
P A+L L+YQE K+L+VMD+ A C++ N+P+ VFN+N+PG + I + GTL
Sbjct: 179 PQAKLYKHLSYQEALKKELAVMDLAAFCQCRDYNMPLRVFNINKPGALLSVIMNQEEGTL 238
Query: 254 I 254
+
Sbjct: 239 V 239
|
|
| UNIPROTKB|P65929 pyrH "Uridylate kinase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 122/232 (52%), Positives = 166/232 (71%)
Query: 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG 82
+ RVLLK+ GE G +DP + +AR++A V R G+++A+V+GGGN FRGA
Sbjct: 30 YSRVLLKLGGEMFGGGQV-GLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQ- 87
Query: 83 NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 142
G++R+ +DY+GML TVMN++ LQ +E GI TRVQTA M +VAEPY+ RAVRHLE
Sbjct: 88 QLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLE 147
Query: 143 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL 202
KGRVVIF AG G P+F+TDT AA R EI A+VVL A VDGV+ ++PR NP A LL +
Sbjct: 148 KGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAV 207
Query: 203 TYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
+++EV + L V D TA +LC +N +P++VFNL GNIA+A++GE++GTL+
Sbjct: 208 SHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLV 259
|
|
| TIGR_CMR|SPO_1662 SPO_1662 "uridylate kinase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 127/242 (52%), Positives = 170/242 (70%)
Query: 17 SKPSY-KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 75
S PS +++RV+LK+SGEAL GD + P IA E+ +V +G+E+ +V+GGGNIF
Sbjct: 11 SDPSQTRYKRVMLKISGEALMGDQGFGLHPPTVKRIAHEIKTVHDMGVEICMVIGGGNIF 70
Query: 76 RGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRR 135
RG S A G++R++ADY+GMLATVMNA+ +QA +E +G+ TRV +A RM EVAEPYIRR
Sbjct: 71 RGLSGAAQ-GMERTTADYMGMLATVMNALGMQAALEGLGVFTRVISAIRMDEVAEPYIRR 129
Query: 136 RAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNP 194
RAVRHLEK RV IFAAGTGNP+FTTDTAA LR E+ E + N VDGVYD +P +
Sbjct: 130 RAVRHLEKKRVCIFAAGTGNPYFTTDTAATLRANEMACEAIFMGKNGVDGVYDKDPALHD 189
Query: 195 NARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
+A D ++Y EV +K L VMD +AI L ++NN+P++VF+L+ G + GE T +
Sbjct: 190 DAVRYDEISYDEVLAKRLKVMDASAIALARDNNLPLIVFSLDTAGGFRGILAGEGTYTKV 249
Query: 255 GG 256
G
Sbjct: 250 QG 251
|
|
| TIGR_CMR|ECH_0266 ECH_0266 "uridylate kinase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 118/238 (49%), Positives = 170/238 (71%)
Query: 17 SKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 76
S K+ RVLLKVSGEAL G D ++ ++ ++ V G+++ +VVGGGNIFR
Sbjct: 5 SATKVKYSRVLLKVSGEALMGKKGFGCDIEVLDKLSHDLKEVHSFGVQLCLVVGGGNIFR 64
Query: 77 GASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRR 136
GASA+ + G +R+S DYIGMLAT+MNA+ LQ +E + + +RV +A ++ V E YIRRR
Sbjct: 65 GASASASFGFERASNDYIGMLATMMNALSLQNALEKVNVQSRVLSAIPITAVCETYIRRR 124
Query: 137 AVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA 196
A+RHLEKGRVVI AAG G+PFFTTDTAAALR E+ + + K T VDGVY +P++N +A
Sbjct: 125 AIRHLEKGRVVICAAGVGSPFFTTDTAAALRGIEMGCDAIFKGTQVDGVYSADPKKNADA 184
Query: 197 RLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
D ++Y+++ S DL +MD+ A++L +E+++P++VFNL QPG+ A I+G+ + T I
Sbjct: 185 VRYDKISYRDLLSLDLKIMDVAAVSLAREHSVPIIVFNLGQPGSFADIIRGDGLYTTI 242
|
|
| TAIR|locus:2100108 AT3G10030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 129/252 (51%), Positives = 176/252 (69%)
Query: 8 GVTLNDNGMSKPSY--KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEV 65
GV +N N SK + +W+RV+LK+SG ALA NIDPK+ IAREVA RLG+EV
Sbjct: 286 GVQIN-NVKSKATSNPRWRRVVLKISGAALACTGPNNIDPKVINLIAREVAMACRLGVEV 344
Query: 66 AIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 125
AIVVG N F G++ +GLDR++A +I M+A+VMN+ LQ+++E IG+ R+QTA +
Sbjct: 345 AIVVGSRNFFCGSTWVTATGLDRTTAYHISMMASVMNSALLQSSLEKIGVQARLQTAISV 404
Query: 126 SEVAEPYIRRRAVRHLEKGRVVIFA---AGTGNPFFTTDTAAALRCAEINAEVVLKATNV 182
V EPY R+RA RHL+KGRVVIF A GNP ++D +AALR +INAE V+K TNV
Sbjct: 405 QGVGEPYNRQRATRHLDKGRVVIFGGIGATLGNPLLSSDASAALRAIDINAEAVVKGTNV 464
Query: 183 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 242
DGVYD + + + N + +++Q++ S+ L+ MD A+ C+EN+IPVVVFN + GNI
Sbjct: 465 DGVYDCHSQ-DSNVTF-EHISFQDLASRGLTSMDTMALNFCEENSIPVVVFNFLEAGNIT 522
Query: 243 KAIQGERVGTLI 254
KA+ GE+VGTLI
Sbjct: 523 KALCGEQVGTLI 534
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A2BVI4 | PYRH_PROM5 | 2, ., 7, ., 4, ., 2, 2 | 0.6034 | 0.8651 | 0.9871 | yes | no |
| Q0BTM0 | PYRH_GRABC | 2, ., 7, ., 4, ., 2, 2 | 0.5948 | 0.8576 | 0.9308 | yes | no |
| Q8DM63 | PYRH_THEEB | 2, ., 7, ., 4, ., 2, 2 | 0.6083 | 0.8951 | 0.9876 | yes | no |
| Q3ALP7 | PYRH_SYNSC | 2, ., 7, ., 4, ., 2, 2 | 0.6223 | 0.8689 | 0.9789 | yes | no |
| Q7U5F5 | PYRH_SYNPX | 2, ., 7, ., 4, ., 2, 2 | 0.6351 | 0.8689 | 0.9789 | yes | no |
| Q1WUG5 | PYRH_LACS1 | 2, ., 7, ., 4, ., 2, 2 | 0.5677 | 0.8764 | 0.975 | yes | no |
| Q3A397 | PYRH_PELCD | 2, ., 7, ., 4, ., 2, 2 | 0.5875 | 0.8876 | 0.9834 | yes | no |
| Q7VD61 | PYRH_PROMA | 2, ., 7, ., 4, ., 2, 2 | 0.6077 | 0.8651 | 0.9746 | yes | no |
| Q39W86 | PYRH_GEOMG | 2, ., 7, ., 4, ., 2, 2 | 0.5809 | 0.8913 | 0.9958 | yes | no |
| Q5N3B6 | PYRH_SYNP6 | 2, ., 7, ., 4, ., 2, 2 | 0.6286 | 0.8838 | 0.9833 | yes | no |
| Q2JJE2 | PYRH_SYNJB | 2, ., 7, ., 4, ., 2, 2 | 0.6495 | 0.8764 | 0.9249 | yes | no |
| Q0I8L5 | PYRH_SYNS3 | 2, ., 7, ., 4, ., 2, 2 | 0.6508 | 0.8651 | 0.9829 | yes | no |
| Q044C8 | PYRH_LACGA | 2, ., 7, ., 4, ., 2, 2 | 0.5635 | 0.8764 | 0.9709 | yes | no |
| P74457 | PYRH_SYNY3 | 2, ., 7, ., 4, ., 2, 2 | 0.6460 | 0.8876 | 0.9115 | N/A | no |
| Q8YXK5 | PYRH_NOSS1 | 2, ., 7, ., 4, ., 2, 2 | 0.6286 | 0.8838 | 0.9752 | yes | no |
| Q3AB79 | PYRH_CARHZ | 2, ., 7, ., 4, ., 2, 2 | 0.6066 | 0.8876 | 0.9793 | yes | no |
| Q7V2F8 | PYRH_PROMP | 2, ., 7, ., 4, ., 2, 2 | 0.6077 | 0.8651 | 0.9871 | yes | no |
| A5GSA3 | PYRH_SYNR3 | 2, ., 7, ., 4, ., 2, 2 | 0.6379 | 0.8651 | 0.9746 | yes | no |
| A3DE57 | PYRH_CLOTH | 2, ., 7, ., 4, ., 2, 2 | 0.5941 | 0.8764 | 0.9957 | yes | no |
| Q3AV98 | PYRH_SYNS9 | 2, ., 7, ., 4, ., 2, 2 | 0.6452 | 0.8726 | 0.9831 | yes | no |
| Q8XJQ8 | PYRH_CLOPE | 2, ., 7, ., 4, ., 2, 2 | 0.5836 | 0.8614 | 0.9704 | yes | no |
| Q2JS42 | PYRH_SYNJA | 2, ., 7, ., 4, ., 2, 2 | 0.6483 | 0.8838 | 0.9291 | yes | no |
| Q0SSC2 | PYRH_CLOPS | 2, ., 7, ., 4, ., 2, 2 | 0.5879 | 0.8614 | 0.9704 | yes | no |
| A3PBP6 | PYRH_PROM0 | 2, ., 7, ., 4, ., 2, 2 | 0.5948 | 0.8651 | 0.9871 | yes | no |
| Q7V6C2 | PYRH_PROMM | 2, ., 7, ., 4, ., 2, 2 | 0.6422 | 0.8651 | 0.9746 | yes | no |
| A2BQ03 | PYRH_PROMS | 2, ., 7, ., 4, ., 2, 2 | 0.5991 | 0.8651 | 0.9871 | yes | no |
| A2C7Q3 | PYRH_PROM3 | 2, ., 7, ., 4, ., 2, 2 | 0.6379 | 0.8651 | 0.9746 | yes | no |
| Q6MGY5 | PYRH_BDEBA | 2, ., 7, ., 4, ., 2, 2 | 0.5564 | 0.8838 | 0.9957 | yes | no |
| A8G3N7 | PYRH_PROM2 | 2, ., 7, ., 4, ., 2, 2 | 0.6034 | 0.8651 | 0.9871 | yes | no |
| A4J5Z1 | PYRH_DESRM | 2, ., 7, ., 4, ., 2, 2 | 0.5714 | 0.8876 | 0.9793 | yes | no |
| A0LJ65 | PYRH_SYNFM | 2, ., 7, ., 4, ., 2, 2 | 0.5696 | 0.9026 | 0.9836 | yes | no |
| A7H724 | PYRH_ANADF | 2, ., 7, ., 4, ., 2, 2 | 0.6050 | 0.8801 | 0.9437 | yes | no |
| Q3MFI4 | PYRH_ANAVT | 2, ., 7, ., 4, ., 2, 2 | 0.6286 | 0.8838 | 0.9752 | yes | no |
| A5GJF0 | PYRH_SYNPW | 2, ., 7, ., 4, ., 2, 2 | 0.6422 | 0.8651 | 0.9829 | yes | no |
| Q74BW2 | PYRH_GEOSL | 2, ., 7, ., 4, ., 2, 2 | 0.5726 | 0.8913 | 0.9958 | yes | no |
| Q8R6G5 | PYRH_FUSNN | 2, ., 7, ., 4, ., 2, 2 | 0.5564 | 0.8838 | 0.9874 | yes | no |
| Q46GQ4 | PYRH_PROMT | 2, ., 7, ., 4, ., 2, 2 | 0.6163 | 0.8651 | 0.9746 | yes | no |
| Q8EQV1 | PYRH_OCEIH | 2, ., 7, ., 4, ., 2, 2 | 0.5805 | 0.8764 | 0.975 | yes | no |
| Q2IMM2 | PYRH_ANADE | 2, ., 7, ., 4, ., 2, 2 | 0.6108 | 0.8913 | 0.9482 | yes | no |
| Q31QY1 | PYRH_SYNE7 | 2, ., 7, ., 4, ., 2, 2 | 0.6286 | 0.8838 | 0.9833 | yes | no |
| A4XM00 | PYRH_CALS8 | 2, ., 7, ., 4, ., 2, 2 | 0.5983 | 0.8726 | 0.9748 | yes | no |
| Q74IR8 | PYRH_LACJO | 2, ., 7, ., 4, ., 2, 2 | 0.5720 | 0.8764 | 0.9709 | yes | no |
| O66929 | PYRH_AQUAE | 2, ., 7, ., 4, ., 2, 2 | 0.5684 | 0.8876 | 0.9875 | yes | no |
| Q10Y48 | PYRH_TRIEI | 2, ., 7, ., 4, ., 2, 2 | 0.6348 | 0.8988 | 0.9836 | yes | no |
| Q1D1I1 | PYRH_MYXXD | 2, ., 7, ., 4, ., 2, 2 | 0.5743 | 0.8988 | 0.96 | yes | no |
| Q31C12 | PYRH_PROM9 | 2, ., 7, ., 4, ., 2, 2 | 0.6034 | 0.8651 | 0.9871 | yes | no |
| Q7NI44 | PYRH_GLOVI | 2, ., 7, ., 4, ., 2, 2 | 0.5897 | 0.8689 | 0.9872 | yes | no |
| A2C0Y1 | PYRH_PROM1 | 2, ., 7, ., 4, ., 2, 2 | 0.6163 | 0.8651 | 0.9746 | yes | no |
| Q24UF9 | PYRH_DESHY | 2, ., 7, ., 4, ., 2, 2 | 0.5875 | 0.8876 | 0.9875 | yes | no |
| Q0TPQ5 | PYRH_CLOP1 | 2, ., 7, ., 4, ., 2, 2 | 0.5836 | 0.8614 | 0.9704 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.4 | 0.963 |
| 4th Layer | 2.7.4.22 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 267 | |||
| cd04254 | 231 | cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t | 1e-149 | |
| PRK00358 | 231 | PRK00358, pyrH, uridylate kinase; Provisional | 1e-141 | |
| cd04239 | 229 | cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase | 1e-128 | |
| TIGR02075 | 232 | TIGR02075, pyrH_bact, uridylate kinase | 1e-121 | |
| COG0528 | 238 | COG0528, PyrH, Uridylate kinase [Nucleotide transp | 1e-121 | |
| PRK14558 | 231 | PRK14558, pyrH, uridylate kinase; Provisional | 1e-76 | |
| PRK14557 | 247 | PRK14557, pyrH, uridylate kinase; Provisional | 4e-70 | |
| PRK14556 | 249 | PRK14556, pyrH, uridylate kinase; Provisional | 5e-59 | |
| cd04253 | 221 | cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP k | 9e-36 | |
| TIGR02076 | 221 | TIGR02076, pyrH_arch, uridylate kinase, putative | 8e-33 | |
| pfam00696 | 230 | pfam00696, AA_kinase, Amino acid kinase family | 3e-30 | |
| cd02115 | 248 | cd02115, AAK, Amino Acid Kinases (AAK) superfamily | 8e-29 | |
| COG0527 | 447 | COG0527, LysC, Aspartokinases [Amino acid transpor | 8e-13 | |
| cd04242 | 251 | cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-k | 2e-12 | |
| cd04255 | 262 | cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD i | 4e-12 | |
| TIGR00657 | 441 | TIGR00657, asp_kinases, aspartate kinase | 8e-12 | |
| cd04234 | 227 | cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfa | 1e-11 | |
| COG1608 | 252 | COG1608, COG1608, Predicted archaeal kinase [Gener | 2e-11 | |
| COG0263 | 369 | COG0263, ProB, Glutamate 5-kinase [Amino acid tran | 4e-10 | |
| cd04241 | 252 | cd04241, AAK_FomA-like, AAK_FomA-like: This CD inc | 1e-09 | |
| cd04246 | 239 | cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino | 3e-09 | |
| TIGR01027 | 363 | TIGR01027, proB, glutamate 5-kinase | 3e-09 | |
| PRK08210 | 403 | PRK08210, PRK08210, aspartate kinase I; Reviewed | 6e-09 | |
| PRK05429 | 372 | PRK05429, PRK05429, gamma-glutamyl kinase; Provisi | 7e-09 | |
| cd04260 | 244 | cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A | 8e-09 | |
| cd04256 | 284 | cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate | 2e-08 | |
| cd04259 | 295 | cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Ki | 3e-08 | |
| PRK09436 | 819 | PRK09436, thrA, bifunctional aspartokinase I/homos | 6e-08 | |
| PRK06291 | 465 | PRK06291, PRK06291, aspartate kinase; Provisional | 7e-08 | |
| cd04261 | 239 | cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino | 8e-08 | |
| cd04243 | 293 | cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino | 1e-07 | |
| cd04257 | 294 | cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kina | 1e-07 | |
| cd04244 | 298 | cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino | 2e-07 | |
| PRK08961 | 861 | PRK08961, PRK08961, bifunctional aspartate kinase/ | 2e-07 | |
| PRK13402 | 368 | PRK13402, PRK13402, gamma-glutamyl kinase; Provisi | 2e-07 | |
| PRK12314 | 266 | PRK12314, PRK12314, gamma-glutamyl kinase; Provisi | 5e-07 | |
| TIGR01092 | 715 | TIGR01092, P5CS, delta l-pyrroline-5-carboxylate s | 3e-06 | |
| COG2054 | 212 | COG2054, COG2054, Uncharacterized archaeal kinase | 4e-06 | |
| PLN02418 | 718 | PLN02418, PLN02418, delta-1-pyrroline-5-carboxylat | 4e-06 | |
| TIGR00656 | 401 | TIGR00656, asp_kin_monofn, aspartate kinase, monof | 1e-05 | |
| PRK07431 | 587 | PRK07431, PRK07431, aspartate kinase; Provisional | 4e-05 | |
| PRK08841 | 392 | PRK08841, PRK08841, aspartate kinase; Validated | 1e-04 | |
| PRK06635 | 404 | PRK06635, PRK06635, aspartate kinase; Reviewed | 1e-04 | |
| PRK08373 | 341 | PRK08373, PRK08373, aspartate kinase; Validated | 1e-04 | |
| cd04240 | 203 | cd04240, AAK_UC, AAK_UC: Uncharacterized (UC) amin | 3e-04 | |
| cd04245 | 288 | cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Ami | 4e-04 | |
| cd04249 | 252 | cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glut | 8e-04 | |
| TIGR02078 | 327 | TIGR02078, AspKin_pair, Pyrococcus aspartate kinas | 0.002 | |
| cd04258 | 292 | cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Ami | 0.003 |
| >gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Score = 416 bits (1072), Expect = e-149
Identities = 159/232 (68%), Positives = 193/232 (83%), Gaps = 1/232 (0%)
Query: 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN 83
+RVLLK+SGEALAG++ IDP++ IARE+ V LG+EVAIVVGGGNIFRGASAA
Sbjct: 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEA 60
Query: 84 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 143
G+DR++ADY+GMLATV+NA+ LQ +ES+G+ TRV +A M VAEPYIRRRA+RHLEK
Sbjct: 61 -GMDRATADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEK 119
Query: 144 GRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT 203
GRVVIFA GTGNPFFTTDTAAALR EINA+V+LKAT VDGVYD +P++NPNA+ D LT
Sbjct: 120 GRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLT 179
Query: 204 YQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255
Y EV SK L VMD TA TLC++NN+P+VVFN+N+PGN+ KA++GE VGTLI
Sbjct: 180 YDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231
|
The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231 |
| >gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 394 bits (1015), Expect = e-141
Identities = 148/231 (64%), Positives = 185/231 (80%), Gaps = 1/231 (0%)
Query: 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNS 84
RVLLK+SGEALAG+ IDP++ IA E+ V LG+EVAIVVGGGNIFRG A
Sbjct: 2 RVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAA- 60
Query: 85 GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKG 144
G+DR++ADY+GMLATVMNA+ LQ +E G+ TRVQ+A M +VAEPYIRRRA+RHLEKG
Sbjct: 61 GMDRATADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKG 120
Query: 145 RVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY 204
RVVIFAAGTGNPFFTTDTAAALR EI A+V+LKATNVDGVYD +P+++P+A+ D LTY
Sbjct: 121 RVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTY 180
Query: 205 QEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255
EV K L VMD TAI+L ++N IP++VFN+N+PGN+ + ++GE +GTL+
Sbjct: 181 DEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231
|
Length = 231 |
| >gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Score = 362 bits (931), Expect = e-128
Identities = 143/231 (61%), Positives = 180/231 (77%), Gaps = 2/231 (0%)
Query: 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNS 84
R++LK+SGEALAG+ IDP++ IARE+ V LG+EVAIVVGGGNI RG AA
Sbjct: 1 RIVLKLSGEALAGEG-GGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAAR- 58
Query: 85 GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKG 144
G+ R++ADYIGMLATVMNA+ LQ +E +G+ TRV +A M VAEPYIRRRA+RHLEKG
Sbjct: 59 GMPRATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKG 118
Query: 145 RVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY 204
R+VIF GTGNP FTTDTAAALR EI A+V+LKATNVDGVYD +P++NP+A+ D ++Y
Sbjct: 119 RIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISY 178
Query: 205 QEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255
E+ K L VMD TA+TLC+ N IP++VFN +PGN+ +A++GE VGTLI
Sbjct: 179 DELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229
|
Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 229 |
| >gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase | Back alignment and domain information |
|---|
Score = 344 bits (886), Expect = e-121
Identities = 133/231 (57%), Positives = 178/231 (77%), Gaps = 1/231 (0%)
Query: 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN 83
+RVLLK+SGEALAG+ IDP IA E+ + ++GIEV IV+GGGNIFRG SAA
Sbjct: 2 KRVLLKLSGEALAGESQFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAA-E 60
Query: 84 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 143
G+DR SADY+GMLATV+N + L+ +E +G+ TRV +A M ++ E YIRR+A++HLEK
Sbjct: 61 LGIDRVSADYMGMLATVINGLALRDALEKLGLKTRVLSAISMPQICESYIRRKAIKHLEK 120
Query: 144 GRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT 203
G+VVIF+ GTGNPFFTTDTAAALR EINA+V+LK TNVDGVY +P++N +A+ DT+T
Sbjct: 121 GKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNVDGVYTADPKKNKDAKKYDTIT 180
Query: 204 YQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
Y E K+L VMD+TA L ++NN+P+VVFN+++PG + K I G+ +GTL+
Sbjct: 181 YNEALKKNLKVMDLTAFALARDNNLPIVVFNIDKPGALKKVILGKGIGTLV 231
|
This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076 [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 232 |
| >gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 344 bits (884), Expect = e-121
Identities = 142/241 (58%), Positives = 184/241 (76%), Gaps = 4/241 (1%)
Query: 17 SKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 76
+KP Y R+LLK+SGEALAG+ IDP++ IA E+ + LG+EVA+VVGGGNI R
Sbjct: 1 AKPKYM--RILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIAR 58
Query: 77 GASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRR 136
G A +G+DR +ADY+GMLATVMNA+ LQ +E +G+ TRVQ+A M +VAEPY RR
Sbjct: 59 GYIGA-AAGMDRVTADYMGMLATVMNALALQDALERLGVDTRVQSAIAMPQVAEPYSRRE 117
Query: 137 AVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPN 195
A+RHLEKGRVVIF GTGNP FTTDTAAALR EI A+V+LKATN VDGVYD +P+++P+
Sbjct: 118 AIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPD 177
Query: 196 ARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255
A+ DTLTY EV L VMD TA +L ++N IP++VFN+N+PGN+ +A++GE VGT++
Sbjct: 178 AKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVE 237
Query: 256 G 256
Sbjct: 238 P 238
|
Length = 238 |
| >gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 1e-76
Identities = 98/231 (42%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN 83
+RVLLK+SGEAL+G+ + DP+ + E+ SV G ++ IV+G GN+FRG
Sbjct: 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVEL--- 57
Query: 84 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 143
L + AD IGML TV+NA++L+ E G+ + + EP +
Sbjct: 58 KELSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIELYFRA 117
Query: 144 GRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT 203
G +VIFA GT NPFFTTDTAAALR E+ A++++KAT VDG+YD +P++ P+A+ +D LT
Sbjct: 118 GYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLT 177
Query: 204 YQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
+ E L VMD A ++C++ I ++V N +PGN+ KA++GE VGTL+
Sbjct: 178 FSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLV 228
|
Length = 231 |
| >gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 4e-70
Identities = 102/235 (43%), Positives = 146/235 (62%), Gaps = 3/235 (1%)
Query: 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 81
++RVL+K+SG ALA + + K IA E+ S+ LGIEV+IV+GGGNIFRG A
Sbjct: 3 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRG-HLA 61
Query: 82 GNSGLDRSSADYIGMLATVMNAIFLQATMES-IGIPTRVQTAFRMSEVAEPYIRRRAVRH 140
G+DR AD IG L T++N++ L+ + S RV T+ + VAEPYIR RAV H
Sbjct: 62 EEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHH 121
Query: 141 LEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLL 199
L+ G +VIF G G PF TTD + R E+N++ +L A VDGV+ +P+ N +A++
Sbjct: 122 LDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMY 181
Query: 200 DTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
L Y +V +++ VMD A+ L ++ N+P VFN ++PG + + GE VGTLI
Sbjct: 182 RKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLI 236
|
Length = 247 |
| >gnl|CDD|173021 PRK14556, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 5e-59
Identities = 99/238 (41%), Positives = 153/238 (64%)
Query: 17 SKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 76
S+ K +R+LLK+SGE+L+ D I+ + I ++ ++T G+E+A+VVGGGNI R
Sbjct: 9 SQKLPKLKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILR 68
Query: 77 GASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRR 136
G A + + R++AD +GM+AT++NA+ L+ + S G+ V +A + + +
Sbjct: 69 GGRANFGNKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSAKGVDGLLKVASAHE 128
Query: 137 AVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA 196
+ L KGRV+IFA GTGNPF TTDT A+LR EI A+ +LKAT V+GVYD +P + +A
Sbjct: 129 FNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDA 188
Query: 197 RLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
+ D +T+ EV SK+L+VMD+ A T C++ IP+ VF+L QP + A+ + GT +
Sbjct: 189 KRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWV 246
|
Length = 249 |
| >gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 9e-36
Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 34/243 (13%)
Query: 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN 83
R+++ + G LA + ++ D I A + ++ G +VA+VVGGG + R S A
Sbjct: 1 RIVISLGGSVLAPE--KDAD-FI-KEYANVLRKISD-GHKVAVVVGGGRLAREYISVARK 55
Query: 84 SGLDRSSADYIGMLATVMNAIFLQATMESI--GIPTRVQTAFRMSEVAEPYIRRRAVRHL 141
G + D IG++AT +NA L A + +PT + A
Sbjct: 56 LGASEAFLDEIGIMATRLNARLLIAALGDAYPPVPTSYEEALEAMF-------------- 101
Query: 142 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 201
G++V+ GT P +TD AAL + A++++ ATNVDGVY +PR++P+A+ D
Sbjct: 102 -TGKIVV-MGGT-EPGQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDR 158
Query: 202 LTYQE----VTSKDL-----SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGT 252
L+ E V D A + + + I +V + P N+ +A++GE VGT
Sbjct: 159 LSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGT 218
Query: 253 LIG 255
+I
Sbjct: 219 IIE 221
|
The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 221 |
| >gnl|CDD|233711 TIGR02076, pyrH_arch, uridylate kinase, putative | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 8e-33
Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 29/239 (12%)
Query: 26 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGNS 84
+++ + G L+ + D + A + + +V +VVGGG R A
Sbjct: 1 IVISLGGSVLSPEI----DAEFIKEFANILRKL-SDEHKVGVVVGGGKTARRYIGVAREL 55
Query: 85 GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKG 144
G + D IG+ AT +NA+ L A + P + A+ + G
Sbjct: 56 GASETFLDEIGIDATRLNAMLLIAALGDDAYPKVPENF------------EEALEAMSLG 103
Query: 145 RVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY 204
++V+ G +P TTD AAL A++++ ATNVDGVYD +P+++P+A+ D LT
Sbjct: 104 KIVV--MGGTHPGHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTP 161
Query: 205 QE----VTSKDL-----SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
+E V S + V+D A + + + I +V N P N+ K ++GE VGT+I
Sbjct: 162 EELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220
|
This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 221 |
| >gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-30
Identities = 55/246 (22%), Positives = 90/246 (36%), Gaps = 51/246 (20%)
Query: 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN 83
+R+++K+ G +L D +A E+A + LGI+V +V GGG AA
Sbjct: 1 KRIVIKLGGSSLT-------DKDEIKRLAEEIAKLLALGIKVVVVSGGGGFTDKLLAAYG 53
Query: 84 SG------------------LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 125
L + L + A + + G+P
Sbjct: 54 IEAGFVRHTAGATGLVLEAQLAAELNRIVVSLGERLGARAVALLLSDGGLPAVRLDL--- 110
Query: 126 SEVAEPYIRRRAVRHLEKGRVVIFAAGTGN---------PFFTTDTAAALRCAEINAEVV 176
LE G V + G ++DT AAL + A+ +
Sbjct: 111 ------VDTEAIKELLEAGVVPVITGFGGENDTGETTTLGRGSSDTLAALLAEALGADKL 164
Query: 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVT--------SKDLSVMDMTAITLCQENNI 228
+ T+VDGVY +PR+NP+A+L+ L+Y E + + V A+ + I
Sbjct: 165 IILTDVDGVYTADPRKNPDAKLIPELSYDEAEELLAAGDVTGGMKVKHPAALKAARRGGI 224
Query: 229 PVVVFN 234
PV + N
Sbjct: 225 PVHIIN 230
|
This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230 |
| >gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 8e-29
Identities = 59/256 (23%), Positives = 96/256 (37%), Gaps = 36/256 (14%)
Query: 27 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL 86
++K G +++ + + +AR + + G V +V G G A L
Sbjct: 1 VIKFGGSSVS--SEERLR-----NLARILVKLASEGGRVVVVHGAGPQITDELLAHGELL 53
Query: 87 -----DRSS---ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM---------SEVA 129
R + D + + M+ + + A +E GI +
Sbjct: 54 GYARGLRITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKI 113
Query: 130 EPYIRRRAVRHLEKGRVVIFAAGTG--------NPFFTTDTAAALRCAEINAEVVLKATN 181
R LE G + I + G +D+ AAL A + A+ ++ T+
Sbjct: 114 TKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTD 173
Query: 182 VDGVYDDNPRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVVFNLNQP 238
VDGVY +PR+ P+A+LL LTY+E V+ A IPV + N P
Sbjct: 174 VDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENP 233
Query: 239 GNIAKAIQGERVGTLI 254
G +A + GTLI
Sbjct: 234 GALA-LFTPDGGGTLI 248
|
The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248 |
| >gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 8e-13
Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 45/185 (24%)
Query: 101 MNAIFLQATMESIGIPTRVQTA----------FRMSEVAEPYIRRRAVRHLEKGRVVI-- 148
++A L A + ++G+ R + + + RR +R LE+G+V +
Sbjct: 121 LSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLEEGKVPVVA 180
Query: 149 -FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 201
F + TT D +AA A + A+ V T+VDGVY +PR P+ARLL
Sbjct: 181 GFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPE 240
Query: 202 LTYQEVTSKDLSVMDMT----------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVG 251
++Y+E +++ A+ + IP+ + N P G
Sbjct: 241 ISYEE-------ALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAP---------G 284
Query: 252 TLIGG 256
TLI
Sbjct: 285 TLITA 289
|
Length = 447 |
| >gnl|CDD|239775 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 2e-12
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 22/111 (19%)
Query: 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT-- 218
D +AL +NA++++ ++VDG+YD NPR NP+A+L+ EV + M
Sbjct: 145 DRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIP-----EVEEITDEIEAMAGG 199
Query: 219 ---------------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
A + E IPVV+ N +P + + GE VGTL
Sbjct: 200 SGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLF 250
|
G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requirement and the proline-triggered aggregation are greatly diminished and abolished, respectively, and more proline is needed for inhibition. Although plant and animal G5Ks are part of a bifunctional polypeptide, delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR; ProA); bacterial and yeast G5Ks are monofunctional single-polypeptide enzymes. In this CD, all three domain architectures are present: G5K, G5K+PUA, and G5K+G5PR. Length = 251 |
| >gnl|CDD|239788 cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-12
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 156 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL--S 213
P TD A L I A ++ + DG+Y +P++N A + ++ E+ KDL
Sbjct: 159 PPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDL 218
Query: 214 VMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
V++ + L Q + V + N PGN+ +A++GE VGT+I
Sbjct: 219 VLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTII 261
|
The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 262 |
| >gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 8e-12
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 21/148 (14%)
Query: 122 AFRMSEVAEPYIRRRAVRHLEKGRVVIFA---AGTGNPFFTT------DTAAALRCAEIN 172
F + V + R LE+G + + A T TT D AAL A +
Sbjct: 146 NFGRARVIIEILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALK 205
Query: 173 AEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE---VTSKDLSVMDMTAITLCQENNIP 229
A+ T+VDG+Y +PR P+AR +D ++Y+E + S V+ + IP
Sbjct: 206 ADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIP 265
Query: 230 VVVFNLNQPGNIAKAIQGERVGTLIGGT 257
+VV + P E GTLI +
Sbjct: 266 IVVKSTFNP---------EAPGTLIVAS 284
|
Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441 |
| >gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;) | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-11
Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 35/179 (19%)
Query: 101 MNAIFLQATMESIGIPTRVQTA---------FRMSEVAEPYIRRRAVRHL-EKGRVVI-- 148
++A L A + GI R A + R L E G+V +
Sbjct: 60 LSARLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVT 119
Query: 149 -FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 201
F + TT D +AA A + A+ V T+VDG+Y +PR P ARL+
Sbjct: 120 GFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPE 179
Query: 202 LTYQEVTSKDLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255
++Y E +L+ V+ A+ ++ NIP+ V N P E GTLI
Sbjct: 180 ISYDEA--LELAYFGAKVLHPRAVEPARKANIPIRVKNTFNP---------EAPGTLIT 227
|
AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria. Length = 227 |
| >gnl|CDD|224524 COG1608, COG1608, Predicted archaeal kinase [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-11
Identities = 63/231 (27%), Positives = 97/231 (41%), Gaps = 34/231 (14%)
Query: 50 AIAREVASVTRLGIEVAIVVGGGNIFRG---ASAAGNSGLD--RSSADYI----GM--LA 98
IARE++ E IVV GG F G A G GL S + M L
Sbjct: 28 RIAREIS---NGKPEKLIVVHGGGSF-GHPAAKEFGLEGLKNYLSPLGFSLTHLAMLELN 83
Query: 99 TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRH-LEKGRV------VIFAA 151
+++ L A + ++ + + + + Y+ A++ LEKG V V+
Sbjct: 84 SIVVDALLDAGVRAVSVVP-ISFSTFNGRILYTYLE--AIKDALEKGFVPVLYGDVVPDD 140
Query: 152 GTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKD 211
G + D E+ + V+ T+VDGVYD +P + P+ARLL + +
Sbjct: 141 DNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGS 200
Query: 212 LSVMDMT--------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
D+T A+ V +FN N+P NI +A++GE VGT I
Sbjct: 201 GGT-DVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRALRGENVGTRI 250
|
Length = 252 |
| >gnl|CDD|223341 COG0263, ProB, Glutamate 5-kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 4e-10
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 18/109 (16%)
Query: 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVM----- 215
DT +AL + A++++ +++DG+YD NPR NP+A+L+ + E+T ++ M
Sbjct: 152 DTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVE--EIT-PEIEAMAGGSG 208
Query: 216 ----------DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
+ A + +PV++ + ++P I A++GE VGTL
Sbjct: 209 SELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAVGTLF 257
|
Length = 369 |
| >gnl|CDD|239774 cd04241, AAK_FomA-like, AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-09
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 19/122 (15%)
Query: 147 VIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE 206
V+ G G + D + E V+ T+VDGVYD P P+A+L+ +
Sbjct: 136 VVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGS 192
Query: 207 VTSKDLSVM------DMT--------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGT 252
+ D+ D+T + I V +FN ++P N+ +A+ G +GT
Sbjct: 193 LE--DILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNGDKPENLYRALLGNFIGT 250
Query: 253 LI 254
I
Sbjct: 251 RI 252
|
Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 252 |
| >gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-09
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 14/107 (13%)
Query: 139 RHLEKGRVVIFAAG----TGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDD 188
LE+G VV+ AG + TT DT A A + A+ T+VDGVY
Sbjct: 121 EALEEGDVVV-VAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTA 179
Query: 189 NPRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVV 232
+PR P AR LD ++Y E+ S V+ ++ L ++ N+P+ V
Sbjct: 180 DPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRV 226
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains. Length = 239 |
| >gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-09
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 16/110 (14%)
Query: 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSV------ 214
DT +AL + A++++ T+VDG+YD +PR NP+A+L+ + +E+T L V
Sbjct: 146 DTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVV--EEITDLLLGVAGDSGS 203
Query: 215 ------M--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256
M + A L +PV++ + ++P IA A++G VGTL
Sbjct: 204 SVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLFHA 253
|
Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family [Amino acid biosynthesis, Glutamate family]. Length = 363 |
| >gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 6e-09
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 136 RAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVY 186
R + LE+G VV+ F T N TT DT AA + AE V T+VDG+
Sbjct: 125 RILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIM 184
Query: 187 DDNPRRNPNARLLDTLTYQEV 207
+PR +ARLLD ++Y EV
Sbjct: 185 TADPRIVEDARLLDVVSYNEV 205
|
Length = 403 |
| >gnl|CDD|235460 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 7e-09
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 22/111 (19%)
Query: 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDM--- 217
DT +AL + A++++ T+VDG+Y +PR+NP+A+L+ EV + M
Sbjct: 154 DTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIP-----EVEEITDELEAMAGG 208
Query: 218 --------------TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
A + IPVV+ + +P + + + GE VGTL
Sbjct: 209 AGSGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEAVGTLF 259
|
Length = 372 |
| >gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 8e-09
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 22/133 (16%)
Query: 135 RRAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGV 185
++ + L++G VV+ F T + TT DT AA A +NAE V T+VDG+
Sbjct: 122 KKILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGI 181
Query: 186 YDDNPRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 242
+PR PNAR+LD ++Y EV + V+ A+ + + NIP+ +
Sbjct: 182 MTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRI---------- 231
Query: 243 KAIQGERVGTLIG 255
++ E GTLI
Sbjct: 232 RSTMSENPGTLIT 244
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. Length = 244 |
| >gnl|CDD|239789 cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-08
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT---YQEVTSKDLSVMDM 217
D+ AA E+ A++++ ++VDG+YD P + +A+L+ T Q +T S +
Sbjct: 181 DSLAARLAVELKADLLILLSDVDGLYDGPP-GSDDAKLIHTFYPGDQQSITFGTKSRVGT 239
Query: 218 -------TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 253
A + VV+ N I K ++G++VGT
Sbjct: 240 GGMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTF 282
|
G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Length = 284 |
| >gnl|CDD|239792 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-08
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 106 LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAA 165
L A ES +Q R+++ A+ I + + G V+ G +DT+AA
Sbjct: 160 LSARCESEYADALLQK--RLADGAQLIITQGFIARNAHGETVLLGRGG------SDTSAA 211
Query: 166 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY---QEVTSKDLSVMDMTAITL 222
A++ A T+V G++ NP P+ARLL L Y QE+ + V+ I
Sbjct: 212 YFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPP 271
Query: 223 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
+ NIP+VV + +P E GTLI
Sbjct: 272 ARRANIPMVVRSTERP---------ELSGTLI 294
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 295 |
| >gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 6e-08
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLS-----VM 215
D +AA+ A ++A+ T+VDGVY +PR P+ARLL +L+YQE +LS V+
Sbjct: 208 DYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAM--ELSYFGAKVL 265
Query: 216 DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNST 261
I + IP ++ N P + GTLIG +
Sbjct: 266 HPRTIAPIAQFQIPCLIKNTFNP---------QAPGTLIGAESDED 302
|
Length = 819 |
| >gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 7e-08
Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 38/192 (19%)
Query: 90 SADYIGMLATVMNAIFLQATMESIGIPTRVQTA-------------FRMSEVAEPYIRRR 136
S DYI ++A L + +GI + T R ++ R
Sbjct: 121 SRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKER 180
Query: 137 AVRHLEKGRV-VI--FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYD 187
L++G + V+ F T TT D +AA+ A ++A+ + T+VDGV
Sbjct: 181 LEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMT 240
Query: 188 DNPRRNPNARLLDTLTYQEVTSKDLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIA 242
+PR P AR++ ++Y E +LS V+ I E IPV V N P
Sbjct: 241 TDPRIVPEARVIPKISYIEAM--ELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNP---- 294
Query: 243 KAIQGERVGTLI 254
E GTLI
Sbjct: 295 -----EFPGTLI 301
|
Length = 465 |
| >gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 8e-08
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 16/108 (14%)
Query: 139 RHLEKGRVVIFA-----AGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYD 187
LE+G VVI A G+ TT DT+A A + A+ T+VDGVY
Sbjct: 121 ELLEEGDVVIVAGFQGINEDGD--ITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYT 178
Query: 188 DNPRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVV 232
+PR P AR LD ++Y E+ S V+ ++ L ++ +P+ V
Sbjct: 179 ADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRV 226
|
In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. Length = 239 |
| >gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 16/100 (16%)
Query: 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLS-----VM 215
D +AAL A ++AE V T+VDGVY +PR+ P+ARLL L+Y E + +L+ V+
Sbjct: 205 DYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDE--AMELAYFGAKVL 262
Query: 216 DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255
I NIP+ + N P E GTLI
Sbjct: 263 HPRTIQPAIRKNIPIFIKNTFNP---------EAPGTLIS 293
|
These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 293 |
| >gnl|CDD|239790 cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 24/133 (18%)
Query: 136 RAVRHLEKGRVVI--FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYD 187
+A +V+ F A TT D +AA+ A ++A+ V T+VDGVY
Sbjct: 173 KAWFSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYS 232
Query: 188 DNPRRNPNARLLDTLTYQEVTSKDLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIA 242
+PR+ +ARLL +L+YQE + +LS V+ I + NIP+++ N P
Sbjct: 233 ADPRKVKDARLLPSLSYQE--AMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNP---- 286
Query: 243 KAIQGERVGTLIG 255
E GTLI
Sbjct: 287 -----EAPGTLIS 294
|
These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Length = 294 |
| >gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 48/186 (25%), Positives = 74/186 (39%), Gaps = 32/186 (17%)
Query: 86 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF-------------RMSEVAEPY 132
L S DYI ++A A + S+GI R R
Sbjct: 113 LTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYER 172
Query: 133 IRRRAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVD 183
+R+R + LE G++ + F T + TT D +A + A ++A+ + +VD
Sbjct: 173 VRKRLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVD 232
Query: 184 GVYDDNPRRNPNARLLDTLTYQEVTSKDLS-----VMDMTAITLCQENNIPVVV---FNL 235
GV +PR P AR + L+Y E +L+ V+ + E IPV V FN
Sbjct: 233 GVMTADPRIVPEARTIPRLSYAEAM--ELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNP 290
Query: 236 NQPGNI 241
PG +
Sbjct: 291 EAPGTL 296
|
The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Length = 298 |
| >gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 160 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY---QEVTSKDLSVMD 216
+DT+AA A++ A V T+V G++ NP+ P+ARLL L Y QE+ + V+
Sbjct: 215 SDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLH 274
Query: 217 MTAITLCQENNIPVVVFNLNQPGNIAKAIQGE 248
+I C++ IP+ + + +P +I G+
Sbjct: 275 PRSIKPCRDAGIPMAILDTERPDLSGTSIDGD 306
|
Length = 861 |
| >gnl|CDD|184032 PRK13402, PRK13402, gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 56/265 (21%), Positives = 105/265 (39%), Gaps = 47/265 (17%)
Query: 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 81
W+R+++KV G +L H Q + + +++ + G +V +V G A AA
Sbjct: 4 NWKRIVVKV-GSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSG------AVAA 56
Query: 82 GN---SGLDRSSADYIGMLATVMNAIFLQA---TMESIGIPTRVQTAFRMSEVAEPYIRR 135
G +DR S +A + + S G P Q ++ + R
Sbjct: 57 GYHKLGFIDRPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPA-AQLLLTHGDLRDRE-RY 114
Query: 136 RAVRH-----LEKGRVVIFA---AGTGN--PFFTTDTAAALRCAEINAEVVLKATNVDGV 185
+R+ LE+G + I A T + D +A+ A +A+ ++ +++DG+
Sbjct: 115 INIRNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGL 174
Query: 186 YDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT-----------------AITLCQENNI 228
YD NPR NP+A+L+ ++VT + + M A + + I
Sbjct: 175 YDQNPRTNPDAKLI-----KQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGI 229
Query: 229 PVVVFNLNQPGNIAKAIQGERVGTL 253
+ N + ++G+ GT
Sbjct: 230 ETFIGNGFTADIFNQLLKGQNPGTY 254
|
Length = 368 |
| >gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 5e-07
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 16/107 (14%)
Query: 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLS------- 213
D +A+ + A++++ +++DG+YD NPR NP+A+L +T E+T + L+
Sbjct: 157 DRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVT--EITEEILALAGGAGS 214
Query: 214 -------VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 253
V + A E I +V+ N P +I ++GE +GTL
Sbjct: 215 KFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTL 261
|
Length = 266 |
| >gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 12/108 (11%)
Query: 157 FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ----EVTSKDL 212
F+ D+ AAL E+ A++++ ++V+G+YD P + +++L+DT + E+T
Sbjct: 166 FWDNDSLAALLALELKADLLILLSDVEGLYD-GPPSDDDSKLIDTFYKEKHQGEITFGTK 224
Query: 213 SVMDMTAITL-------CQENNIPVVVFNLNQPGNIAKAIQGERVGTL 253
S + +T PV++ + P NI K ++G++VGTL
Sbjct: 225 SRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTL 272
|
This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region [Amino acid biosynthesis, Glutamate family]. Length = 715 |
| >gnl|CDD|224965 COG2054, COG2054, Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-06
Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 34/219 (15%)
Query: 50 AIAREVASVTRLGIEVAIVVGGG---NIFRGASAAGNSGLDRSSADYIGMLATVMNAIFL 106
A ++ L + IV GGG ++ R GL S++ ++ + A +L
Sbjct: 14 RAAAVKEALENLQRSILIVPGGGIFADLVRKIDEEF--GLSDSASHWMAITAMDQYGFYL 71
Query: 107 QATMESIGIPTRVQTAFRMSEVAE----PYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDT 162
T + + A+ PY R L V T+D+
Sbjct: 72 ADLASRFVTDTVTEPEDGIKPDAKAVLLPYRLLRKTDPLPHSWEV-----------TSDS 120
Query: 163 AAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL----SVMDMT 218
+ A+ A V+KAT+VDG+Y++ +P +L+ +E+ + DL + +D
Sbjct: 121 ISVWIAAKAGATEVVKATDVDGIYEE----DPKGKLV-----REIRASDLKTGETSVDPY 171
Query: 219 AITLCQENNIPVVVFNLNQPGNIAKAIQG-ERVGTLIGG 256
L + + V N +P + A++G E VGTLI G
Sbjct: 172 LPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVG 210
|
Length = 212 |
| >gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Query: 157 FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY----QEVTSKDL 212
F+ D+ AAL E+ A++++ ++V+G+Y P +P+++L+ T E+T +
Sbjct: 174 FWDNDSLAALLALELKADLLILLSDVEGLYT-GPPSDPSSKLIHTYIKEKHQDEITFGEK 232
Query: 213 SVMD---MTAITLCQEN----NIPVVVFNLNQPGNIAKAIQGERVGTLI---GGTWNSTV 262
S + MTA N IPVV+ + NI K ++GERVGTL W +
Sbjct: 233 SRVGRGGMTAKVKAAVNAASAGIPVVITSGYALDNIRKVLRGERVGTLFHQDAHLWAPSK 292
Query: 263 S 263
Sbjct: 293 E 293
|
Length = 718 |
| >gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 22/146 (15%)
Query: 123 FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTG---NPFFTT------DTAAALRCAEINA 173
F +++ R + LE+G +V+ A G + TT D AAL A + A
Sbjct: 108 FGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKA 167
Query: 174 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE---VTSKDLSVMDMTAITLCQENNIPV 230
+ V T+V GVY +PR A+ +D ++Y+E + + V+ + + +P+
Sbjct: 168 DRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPI 227
Query: 231 VVFNLNQPGNIAKAIQGERVGTLIGG 256
V + P GTLI
Sbjct: 228 EVRSSFDPEE----------GTLITN 243
|
This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401 |
| >gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 27/90 (30%)
Query: 136 RAVRHLEKGRVVIFAAG------TGNPFFTT------DT-----AAALR--CAEINAEVV 176
R RHL+ G+VV+ AG + N TT DT AAAL EI
Sbjct: 120 RIQRHLDAGKVVV-VAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIY---- 174
Query: 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQE 206
T+V GV +PR P A+L+D ++ E
Sbjct: 175 ---TDVPGVLTTDPRLVPEAQLMDEISCDE 201
|
Length = 587 |
| >gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 141 LEKGRVVIFAAGTG---NPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPR 191
LE+ ++VI A G N TT DT A +NA+ T+VDGVY +PR
Sbjct: 125 LEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPR 184
Query: 192 RNPNARLLDTLTY---QEVTSKDLSVMDMTAITLCQENNIPVVV 232
NAR LD + + + + K V+ + ++ ++++P+ V
Sbjct: 185 VVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRV 228
|
Length = 392 |
| >gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-04
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 133 IRRRAVRH-LEKGRVVIFA-----AGTGNPFFTT------DTAAALRCAEINAEVVLKAT 180
I +R L++G VV+ A G TT DT A A + A+ T
Sbjct: 116 IDPSRIREALDEGDVVVVAGFQGVDEDGE--ITTLGRGGSDTTAVALAAALKADECEIYT 173
Query: 181 NVDGVYDDNPRRNPNARLLDTLTYQE 206
+VDGVY +PR P AR LD ++Y+E
Sbjct: 174 DVDGVYTTDPRIVPKARKLDKISYEE 199
|
Length = 404 |
| >gnl|CDD|236250 PRK08373, PRK08373, aspartate kinase; Validated | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 92 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV------AEPYIR------RRAVR 139
DYI ++A+ +E+ GI +V + + E A I+ +
Sbjct: 103 DYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKKSKRNVKILYE 162
Query: 140 HLEKGRVVIFAAGTG--NPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPR 191
LE+GRV + G N F T D +A +NA+ VL ++V+G+Y +P+
Sbjct: 163 LLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPK 222
Query: 192 RNPNARLLDTLTYQEV 207
P+ARL+ L+Y E
Sbjct: 223 LVPSARLIPYLSYDEA 238
|
Length = 341 |
| >gnl|CDD|239773 cd04240, AAK_UC, AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 159 TTDTAAALRCAEINAEVVLKATNVDGVYDDNPR--RNPNARLLDTLTYQEVTSKDLSVMD 216
T+D+ AA ++ A+ ++ T+VDG+Y+ + + A L + +D
Sbjct: 115 TSDSIAAWLAKKLGAKRLVIVTDVDGIYEKDGKLVNEIAAAEL----------LGETSVD 164
Query: 217 MTAITLCQENNIPVVVFNLNQPGNIAKAIQGER-VGTLI 254
L + I V N + P + A++G VGT I
Sbjct: 165 PAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI 203
|
Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily. Length = 203 |
| >gnl|CDD|239778 cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 180 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT-----AITLCQENNIPVVVFN 234
T+VDG+Y NPR N + + +TY+E+ ++LS + A+ E IP+ + N
Sbjct: 219 TDVDGIYAANPRIVANPKPISEMTYREM--RELSYAGFSVFHDEALIPAIEAGIPINIKN 276
Query: 235 LNQPGNIAKAIQGERVGTLI 254
N P E GTLI
Sbjct: 277 TNHP---------EAPGTLI 287
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. Length = 288 |
| >gnl|CDD|239782 cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 8e-04
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP--NARLLDTLTYQEVTSKDLSVMDMT 218
D AA +NA++VL ++V GV D + + NA+ L Q V + + V
Sbjct: 158 DQAATAIAQLLNADLVL-LSDVSGVLDADKQLISELNAKQAAELIEQGVITDGMIVKVNA 216
Query: 219 AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
A+ Q + + + P + + GE VGT I
Sbjct: 217 ALDAAQSLRRGIDIASWQYPEQLTALLAGEPVGTKI 252
|
There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK). Length = 252 |
| >gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit, putative | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.002
Identities = 19/64 (29%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 171 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE--VTSK-DLSVMDMTAITLCQENN 227
+N+++V ++V+G++ +P+ P+ARL+ L+Y+E + +K + + A L +E
Sbjct: 192 LNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYK 251
Query: 228 IPVV 231
IPV+
Sbjct: 252 IPVL 255
|
This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between [Amino acid biosynthesis, Aspartate family]. Length = 327 |
| >gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Query: 160 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT------SKDLS 213
+D +AAL ++AE + T+V G+Y +PR P AR + +++ E +K L
Sbjct: 203 SDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLH 262
Query: 214 VMDMT-AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
+ AI NIPV V + P E GTLI
Sbjct: 263 PATLLPAI----RKNIPVFVGSSKDP---------EAGGTLI 291
|
AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Length = 292 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 267 | |||
| PRK14558 | 231 | pyrH uridylate kinase; Provisional | 100.0 | |
| PRK00358 | 231 | pyrH uridylate kinase; Provisional | 100.0 | |
| PRK14556 | 249 | pyrH uridylate kinase; Provisional | 100.0 | |
| COG0528 | 238 | PyrH Uridylate kinase [Nucleotide transport and me | 100.0 | |
| cd04239 | 229 | AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik | 100.0 | |
| TIGR02075 | 233 | pyrH_bact uridylate kinase. This protein, also cal | 100.0 | |
| cd04254 | 231 | AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi | 100.0 | |
| PRK14557 | 247 | pyrH uridylate kinase; Provisional | 100.0 | |
| COG0263 | 369 | ProB Glutamate 5-kinase [Amino acid transport and | 100.0 | |
| PRK12314 | 266 | gamma-glutamyl kinase; Provisional | 100.0 | |
| PRK13402 | 368 | gamma-glutamyl kinase; Provisional | 100.0 | |
| PTZ00489 | 264 | glutamate 5-kinase; Provisional | 100.0 | |
| cd04256 | 284 | AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase | 100.0 | |
| PRK05429 | 372 | gamma-glutamyl kinase; Provisional | 100.0 | |
| cd04242 | 251 | AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K | 100.0 | |
| cd04253 | 221 | AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP | 100.0 | |
| TIGR01027 | 363 | proB glutamate 5-kinase. Bacterial ProB proteins h | 100.0 | |
| TIGR02076 | 221 | pyrH_arch uridylate kinase, putative. This family | 100.0 | |
| cd04241 | 252 | AAK_FomA-like AAK_FomA-like: This CD includes a fo | 100.0 | |
| cd04255 | 262 | AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th | 100.0 | |
| cd02115 | 248 | AAK Amino Acid Kinases (AAK) superfamily, catalyti | 100.0 | |
| COG1608 | 252 | Predicted archaeal kinase [General function predic | 100.0 | |
| cd04234 | 227 | AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK) | 100.0 | |
| cd04261 | 239 | AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina | 100.0 | |
| cd04246 | 239 | AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina | 100.0 | |
| COG0527 | 447 | LysC Aspartokinases [Amino acid transport and meta | 100.0 | |
| PRK08841 | 392 | aspartate kinase; Validated | 100.0 | |
| KOG1154 | 285 | consensus Gamma-glutamyl kinase [Amino acid transp | 100.0 | |
| TIGR00656 | 401 | asp_kin_monofn aspartate kinase, monofunctional cl | 100.0 | |
| cd04244 | 298 | AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina | 100.0 | |
| cd04260 | 244 | AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase | 100.0 | |
| PRK08210 | 403 | aspartate kinase I; Reviewed | 100.0 | |
| PLN02512 | 309 | acetylglutamate kinase | 100.0 | |
| TIGR01092 | 715 | P5CS delta l-pyrroline-5-carboxylate synthetase. T | 100.0 | |
| PRK06635 | 404 | aspartate kinase; Reviewed | 100.0 | |
| PRK14058 | 268 | acetylglutamate/acetylaminoadipate kinase; Provisi | 100.0 | |
| PRK07431 | 587 | aspartate kinase; Provisional | 100.0 | |
| CHL00202 | 284 | argB acetylglutamate kinase; Provisional | 100.0 | |
| PRK00942 | 283 | acetylglutamate kinase; Provisional | 100.0 | |
| COG0548 | 265 | ArgB Acetylglutamate kinase [Amino acid transport | 100.0 | |
| PRK12353 | 314 | putative amino acid kinase; Reviewed | 100.0 | |
| PLN02418 | 718 | delta-1-pyrroline-5-carboxylate synthase | 100.0 | |
| cd04259 | 295 | AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super | 100.0 | |
| cd04250 | 279 | AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase | 100.0 | |
| cd04245 | 288 | AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki | 100.0 | |
| cd04257 | 294 | AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa | 100.0 | |
| TIGR00657 | 441 | asp_kinases aspartate kinase. The Lys-sensitive en | 100.0 | |
| cd04243 | 293 | AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina | 99.98 | |
| PRK06291 | 465 | aspartate kinase; Provisional | 99.98 | |
| cd04258 | 292 | AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki | 99.98 | |
| PRK08373 | 341 | aspartate kinase; Validated | 99.98 | |
| cd04238 | 256 | AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate | 99.97 | |
| cd04235 | 308 | AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot | 99.97 | |
| TIGR00746 | 310 | arcC carbamate kinase. The seed alignment for this | 99.97 | |
| cd04247 | 306 | AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa | 99.97 | |
| PRK09084 | 448 | aspartate kinase III; Validated | 99.97 | |
| cd04249 | 252 | AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina | 99.97 | |
| cd04251 | 257 | AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina | 99.97 | |
| PRK09034 | 454 | aspartate kinase; Reviewed | 99.97 | |
| PRK05925 | 440 | aspartate kinase; Provisional | 99.97 | |
| cd04240 | 203 | AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin | 99.97 | |
| PF00696 | 242 | AA_kinase: Amino acid kinase family Match to Gluta | 99.97 | |
| PLN02551 | 521 | aspartokinase | 99.97 | |
| TIGR02078 | 327 | AspKin_pair Pyrococcus aspartate kinase subunit, p | 99.96 | |
| PRK12686 | 312 | carbamate kinase; Reviewed | 99.96 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 99.96 | |
| PRK12454 | 313 | carbamate kinase-like carbamoyl phosphate syntheta | 99.96 | |
| cd04237 | 280 | AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) | 99.96 | |
| TIGR00761 | 231 | argB acetylglutamate kinase. This model describes | 99.96 | |
| TIGR01890 | 429 | N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi | 99.96 | |
| PRK08961 | 861 | bifunctional aspartate kinase/diaminopimelate deca | 99.96 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 99.95 | |
| PRK12352 | 316 | putative carbamate kinase; Reviewed | 99.95 | |
| PRK05279 | 441 | N-acetylglutamate synthase; Validated | 99.95 | |
| PRK12354 | 307 | carbamate kinase; Reviewed | 99.95 | |
| cd04236 | 271 | AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA | 99.95 | |
| cd04252 | 248 | AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam | 99.95 | |
| cd04248 | 304 | AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S | 99.94 | |
| PRK09411 | 297 | carbamate kinase; Reviewed | 99.94 | |
| PRK09181 | 475 | aspartate kinase; Validated | 99.93 | |
| PLN02825 | 515 | amino-acid N-acetyltransferase | 99.92 | |
| PRK04531 | 398 | acetylglutamate kinase; Provisional | 99.91 | |
| KOG0456 | 559 | consensus Aspartate kinase [Amino acid transport a | 99.9 | |
| COG2054 | 212 | Uncharacterized archaeal kinase related to asparto | 99.89 | |
| COG0549 | 312 | ArcC Carbamate kinase [Amino acid transport and me | 99.88 | |
| KOG2436 | 520 | consensus Acetylglutamate kinase/acetylglutamate s | 98.44 |
| >PRK14558 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-45 Score=316.95 Aligned_cols=229 Identities=43% Similarity=0.742 Sum_probs=199.3
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 103 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 103 (267)
+++|||+|||+|+++++++++.+.+++++++|+++++.|+++|||||||++++++... +++....+.++..++++|+
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~~---~~~~~~~d~ig~~~~~ln~ 77 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELK---ELSPTRADQIGMLGTVINA 77 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhcc---CCChHHHHHHHHHHHHHHH
Confidence 5799999999999886667999999999999999999999999999999998776532 3555567888888888998
Q ss_pred HHHHHHHHHcCCCeeEeecccc-ccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeecc
Q 024480 104 IFLQATMESIGIPTRVQTAFRM-SEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 182 (267)
Q Consensus 104 ~l~~~~l~~~Gi~~~~~~~~~~-~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDV 182 (267)
.++.++|.++|+++.++..+.. .++ .++..+.+..+++.|.|||++|+.+.+++++|++|+++|..++|++|++||||
T Consensus 78 ~~~~~~l~~~gi~a~~~~~~~~~~~~-~~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdV 156 (231)
T PRK14558 78 LYLKDIFEKSGLKAVIVSQIVNLPSV-EPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKV 156 (231)
T ss_pred HHHHHHHHHcCCCeEEeccccccchh-hhhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecC
Confidence 7778999999999876543211 111 11122446688999999999999888899999999999999999999999999
Q ss_pred CccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 183 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 183 dGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
||||++||+.+|+|+++++|+++|+.+++...||+.|+++|.++|++++|+|+++|+++.+++.|+..||+|.+
T Consensus 157 dGvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 230 (231)
T PRK14558 157 DGIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP 230 (231)
T ss_pred CeeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999975
|
|
| >PRK00358 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=314.96 Aligned_cols=231 Identities=64% Similarity=1.032 Sum_probs=201.7
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 103 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 103 (267)
+++|||||||+++++.+++++.+.+++++++|+++.+.|+++|||||||++++++... ..+++....++++++++++|+
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 79 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGA-AAGMDRATADYMGMLATVMNA 79 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHh-hcCCChhhHHHHHHHHHHHHH
Confidence 4789999999999765567899999999999999999999999999999999887642 235655567888899999999
Q ss_pred HHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 024480 104 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 183 (267)
Q Consensus 104 ~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVd 183 (267)
.+++++|.++|+++..+++........++..+.+.++|++|.|||++++.+.++++||++|+++|.+|+|++|+|+||||
T Consensus 80 ~ll~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVd 159 (231)
T PRK00358 80 LALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVD 159 (231)
T ss_pred HHHHHHHHHcCCCeEEechhhcccccCcccHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcC
Confidence 88889999999998766654443333344445567899999999999877777899999999999999999999999999
Q ss_pred ccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 184 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 184 GVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|||++||+.+|++++|++|+++|+.+.|...||+.+++.|.++|++++|+|+++|+++.++++|+..||+|.
T Consensus 160 GVy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 160 GVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231 (231)
T ss_pred ceEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence 999999999999999999999998777777889999999999999999999999999999999998999984
|
|
| >PRK14556 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=307.23 Aligned_cols=235 Identities=42% Similarity=0.685 Sum_probs=213.4
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+++++|+|++|++|..++++.++.+.+.+++++|+++.+.|+++.||.|||.++++.......|+++...|+++++++++
T Consensus 14 ~~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~i 93 (249)
T PRK14556 14 KLKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMI 93 (249)
T ss_pred hhCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHH
Confidence 47899999999999876556789999999999999999999999999999999998543211357888899999999999
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 181 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTD 181 (267)
|+.+++.+|.+.|+++..+++.....+.++|..+++.+.++.|.|+|+.|+.|.++++||++|+++|.+++||.|+++||
T Consensus 94 Nal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~Td 173 (249)
T PRK14556 94 NALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATT 173 (249)
T ss_pred HHHHHHHHHHHcCCCeEEeeccccCcCCCCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999999999999887777777776677788999999999999888999999999999999999999999999
Q ss_pred cCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 182 VdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|||||++||+++|+|++++++++.|..+.+...|+..|++.+.++|++++|+|+++|++|.+++.|+.+||+|.-
T Consensus 174 VDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 174 VNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL 248 (249)
T ss_pred CCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence 999999999999999999999998877666678899999999999999999999999999999999999999963
|
|
| >COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=298.66 Aligned_cols=234 Identities=60% Similarity=0.960 Sum_probs=218.9
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHH
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATV 100 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 100 (267)
++++++|+|+||++|..++++.+|.+.+.+++++|+++.+.|.++.||.|||.++|++.... .|+++...|++++++++
T Consensus 3 ~~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~-~g~~r~~~D~mGmlaTv 81 (238)
T COG0528 3 PKYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAA-AGMDRVTADYMGMLATV 81 (238)
T ss_pred cceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHH-cCCchhhhhHHHHHHHH
Confidence 56789999999999998766779999999999999999999999999999999999988765 48888899999999999
Q ss_pred HHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEee
Q 024480 101 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 180 (267)
Q Consensus 101 ~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lT 180 (267)
+|+.+++.+|...|+++..++......+.++|..++..+.|+.|.|+|+.|.+++|+.++|+.|++.|.+++||.|+..|
T Consensus 82 mNal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~at 161 (238)
T COG0528 82 MNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKAT 161 (238)
T ss_pred HHHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEec
Confidence 99999999999999999998887776666777777888999999999999988999999999999999999999999999
Q ss_pred c-cCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 181 N-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 181 D-VdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
+ |||||++||+++|+|+.++++||.|+.+.+...|++.|+..+.+++++++++|+++++++.+++.|++.||.|.
T Consensus 162 n~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~ 237 (238)
T COG0528 162 NKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVE 237 (238)
T ss_pred cCCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEec
Confidence 5 99999999999999999999999999988899999999999999999999999999999999999999999986
|
|
| >cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=306.35 Aligned_cols=229 Identities=62% Similarity=0.991 Sum_probs=199.6
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAI 104 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 104 (267)
++|||||||++++++. +++.+.+++++++|+++++.|+++|||||||+++.++.... +++++...+++++.++++|+.
T Consensus 1 ~iViKiGGs~l~~~~~-~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 78 (229)
T cd04239 1 RIVLKLSGEALAGEGG-GIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAA-RGMPRATADYIGMLATVMNAL 78 (229)
T ss_pred CEEEEECcceecCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhh-cCCChhhHHHHHHHHHHHHHH
Confidence 5899999999998764 78899999999999999989999999999999877765433 345555678889999999999
Q ss_pred HHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCc
Q 024480 105 FLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDG 184 (267)
Q Consensus 105 l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdG 184 (267)
++..+|.++|+++..+++.+...+...+..+.+.++++.|.|||++|+.|.++++||++|+++|..|+|++|+|+|||||
T Consensus 79 l~~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdG 158 (229)
T cd04239 79 ALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDG 158 (229)
T ss_pred HHHHHHHHcCCCEEEeCHHHHhhhhccccHHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCc
Confidence 99899999999998766665443322222234668899999999999988888999999999999999999999999999
Q ss_pred cccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 185 VYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 185 Vy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
||++||+.+|++++|++|+++|+.++..+.+|+.+++.+.++|++++|+|+++|+++.++++|+..||+|.
T Consensus 159 vy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 229 (229)
T cd04239 159 VYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229 (229)
T ss_pred ccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence 99999999999999999999998877667789999999999999999999999999999999998999884
|
Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als |
| >TIGR02075 pyrH_bact uridylate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=304.80 Aligned_cols=232 Identities=56% Similarity=0.960 Sum_probs=201.6
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMN 102 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 102 (267)
++++|||||||+|+++.+++++.+.+++++++|+++...|+++|||||||++..++. +..++++..+.+++++++++++
T Consensus 1 ~~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~-a~~~~~~~~~~d~~g~~~~~l~ 79 (233)
T TIGR02075 1 YKRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVS-AKELGIDRVTADYMGMLATVIN 79 (233)
T ss_pred CCEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHH-HHhcCCCCccHHHHHHHHHHHH
Confidence 368999999999998445678999999999999999988899999999999876654 3334565556788999999999
Q ss_pred HHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec-
Q 024480 103 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN- 181 (267)
Q Consensus 103 ~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTD- 181 (267)
..++.++|.++|+++.++++.+.......+..+.+.+++++|+|||++++.|.++++||++|+++|..|+||+|+|+||
T Consensus 80 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~ 159 (233)
T TIGR02075 80 GLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNG 159 (233)
T ss_pred HHHHHHHHHhCCCCcEEeccccCCCCccccCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecc
Confidence 9888899999999998877665442222333345668899999999999878889999999999999999999999999
Q ss_pred cCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 182 VdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|||||++||+.+|+++++++|+++|+.+.+...+|+.+++.|.++|++++|+|+++|++|.++++|+.+||+|.
T Consensus 160 VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 160 VDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred cCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 99999999999999999999999998777777889999999999999999999999999999999999999984
|
This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076. |
| >cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=303.34 Aligned_cols=231 Identities=69% Similarity=1.077 Sum_probs=198.1
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 103 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 103 (267)
+++|||||||++++|++++++.+.+++++++|+++...|+++|||||||++.++.... .++....+.++++++++++|+
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~~-~~~~~~~~~d~~g~~~~~~n~ 79 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAA-EAGMDRATADYMGMLATVINA 79 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchhh-hcCCCchhhhHHHHHHHHHHH
Confidence 5799999999999987778999999999999999988889999999999885342222 234544456778888999999
Q ss_pred HHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 024480 104 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 183 (267)
Q Consensus 104 ~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVd 183 (267)
.++..+|.++|+++.++++.+...+...+..+.+.++++.|+|||++|+.|.+.+++|++|+++|.+|+|++|+++||||
T Consensus 80 ~ll~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVd 159 (231)
T cd04254 80 LALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVD 159 (231)
T ss_pred HHHHHHHHHcCCCeEEEcHHHhhhhhcccCHHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCC
Confidence 88888999999999877766543221111123456889999999999987888899999999999999999999999999
Q ss_pred ccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 184 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 184 GVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|||++||+.+|+++++++|+++|+.+.+...||+++++.|.++|++++|+|+++|++|.++++|+.+||+|.
T Consensus 160 Gvy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 160 GVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred EEEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 999999999999999999999998777778899999999999999999999999999999999998999984
|
The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be |
| >PRK14557 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=294.52 Aligned_cols=240 Identities=43% Similarity=0.731 Sum_probs=200.4
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+++++||||||+++.+++.+.++.+.+++++++|+++.+.|++++||||||.+.++. .++.+++++...|.++++++++
T Consensus 3 ~~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~-~a~~~~~~~~~~D~ig~~g~~l 81 (247)
T PRK14557 3 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGH-LAEEWGIDRVEADNIGTLGTII 81 (247)
T ss_pred cccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHH-HHHhcCCChHHHHHHHHHHHHH
Confidence 367999999999998766567889999999999999999999999999999876543 2333456666789999999999
Q ss_pred HHHHHHHHHHHc-CCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEe-
Q 024480 102 NAIFLQATMESI-GIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA- 179 (267)
Q Consensus 102 ~~~l~~~~l~~~-Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~l- 179 (267)
|+.++..+|... +..+..++.........++...++.+.|++|.|||++|+.|.+++++|++|+++|.+++||.|+++
T Consensus 82 na~ll~~~l~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~t 161 (247)
T PRK14557 82 NSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAK 161 (247)
T ss_pred HHHHHHHHHHhhhCCceeEEeccccccccchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEec
Confidence 999998888874 665543443322222233333446677899999999999889999999999999999999999999
Q ss_pred eccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCCC
Q 024480 180 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 259 (267)
Q Consensus 180 TDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~~ 259 (267)
|||||||++||+.+|+|++|++|++.|+...+...|++.|++.|.++|++++|+|+++|+.|.++++|+.+||+|.+..+
T Consensus 162 tdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~~ 241 (247)
T PRK14557 162 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDAS 241 (247)
T ss_pred CCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCcc
Confidence 49999999999999999999999998875445557889999999999999999999999999999999999999998776
Q ss_pred Ccc
Q 024480 260 STV 262 (267)
Q Consensus 260 ~~~ 262 (267)
...
T Consensus 242 ~~~ 244 (247)
T PRK14557 242 LLV 244 (247)
T ss_pred ccc
Confidence 543
|
|
| >COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=299.11 Aligned_cols=233 Identities=25% Similarity=0.396 Sum_probs=199.9
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChH--HHHHHH
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA--DYIGML 97 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~--~~~~~~ 97 (267)
..+.+++|||+|.|+|++. .+.++.+.+..++++|++|++.|+++|||+ +|+++.++..++ ++.++. ...|++
T Consensus 3 ~~~~~riVvKiGSs~Lt~~-~g~l~~~~l~~l~~~ia~L~~~G~eVilVS-SGAiaaG~~~Lg---~~~rp~~l~~kQA~ 77 (369)
T COG0263 3 LSSARRIVVKIGSSSLTDG-TGGLDRSKLEELVRQVAALHKAGHEVVLVS-SGAIAAGRTRLG---LPKRPKTLAEKQAA 77 (369)
T ss_pred CCcceEEEEEECcceeeCC-CCCcCHHHHHHHHHHHHHHHhCCCEEEEEc-cchhhhChhhcC---CCCCCcchHHHHHH
Confidence 4567899999999999987 457899999999999999999999999997 789998988876 655554 456777
Q ss_pred HHHHHHHHH---HHHHHHcCCCeeEeeccccccccc--hHHHH--HHHHHhhCCCEEEEeCC-----CCCCCCCcHHHHH
Q 024480 98 ATVMNAIFL---QATMESIGIPTRVQTAFRMSEVAE--PYIRR--RAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAA 165 (267)
Q Consensus 98 ~~~~~~~l~---~~~l~~~Gi~~~~~~~~~~~~~~~--~~~~~--~l~~ll~~g~iPIi~g~-----~g~~~~~sD~~Aa 165 (267)
+++.+..|+ .+.|..+|+++ .|.+++.+|+.+ +|.|. .+..+|+.|.|||+|.+ .|..|+|||.+|+
T Consensus 78 AAVGQ~~Lm~~y~~~f~~~g~~v-~QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~LsA 156 (369)
T COG0263 78 AAVGQVRLMQLYEELFARYGIKV-GQILLTRDDFSDRRRYLNARNTLSALLELGVVPIINENDTVATEEIKFGDNDTLSA 156 (369)
T ss_pred HHhCHHHHHHHHHHHHHhcCCee-eEEEeehhhhhhHHHHHHHHHHHHHHHHCCceeeecCCCceeeeeeeecCCchHHH
Confidence 777776654 56699999986 488899888864 35553 35689999999999986 3567999999999
Q ss_pred HHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCH--HHHhh--------cCCCcc--hHHHHHHHHhCCCcEEEE
Q 024480 166 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTS--------KDLSVM--DMTAITLCQENNIPVVVF 233 (267)
Q Consensus 166 ~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~--~e~~~--------lg~g~m--k~~aa~~a~~~Gi~v~I~ 233 (267)
++|..++||.|+++||+||+|++||+.+|+|++|+++.. .|+.. +|+|+| |+.||+.|.++|++++|+
T Consensus 157 ~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~ 236 (369)
T COG0263 157 LVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIA 236 (369)
T ss_pred HHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEe
Confidence 999999999999999999999999999999999998864 23332 478999 999999999999999999
Q ss_pred cCCCCCcHHHHhcCCCcceEEecCC
Q 024480 234 NLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 234 ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
+|.+|+.+.+++.++..||+|.+..
T Consensus 237 ~g~~~~~i~~~~~~~~~GT~F~~~~ 261 (369)
T COG0263 237 SGSKPDVILDALEGEAVGTLFEPQA 261 (369)
T ss_pred cCCCcchHHHHHhCCCCccEEecCC
Confidence 9999999999999999999999655
|
|
| >PRK12314 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=291.71 Aligned_cols=235 Identities=21% Similarity=0.267 Sum_probs=182.9
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEE-ECCchHHhhhHHhcCCCCCCCh--HHHHH
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV-VGGGNIFRGASAAGNSGLDRSS--ADYIG 95 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViV-hGgG~~~~~~~~~~~~~l~~~~--~~~~~ 95 (267)
...+++++|+|||||++++++ ..++.+.+++++++|+++++.|+++||| ||++++++.+ ++.+..+... .+.+.
T Consensus 5 ~~~~~~~iViK~Ggs~l~~~~-~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~--l~~~~~~~~~~~~~a~a 81 (266)
T PRK12314 5 QLENAKRIVIKVGSSTLSYEN-GKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTK--LKLDKRPTSLAEKQALA 81 (266)
T ss_pred hHhhCCEEEEEeCCCeeeCCC-CCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCccccccee--eccccCCCCHHHHHHHH
Confidence 344578999999999999765 3789999999999999999999999987 5557776543 3322222111 12223
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeeEeeccccccccch--HHH--HHHHHHhhCCCEEEEeCC-----CCC--CCCCcHHHH
Q 024480 96 MLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIR--RRAVRHLEKGRVVIFAAG-----TGN--PFFTTDTAA 164 (267)
Q Consensus 96 ~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~--~~~--~~l~~ll~~g~iPIi~g~-----~g~--~~~~sD~~A 164 (267)
+.++.....++.++|.++|+++. |...+.+++..+ +.+ ..+.++++.|+|||++++ .+. .+++||++|
T Consensus 82 a~Gq~~l~~~~~~~~~~~g~~~~-q~llT~~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~A 160 (266)
T PRK12314 82 AVGQPELMSLYSKFFAEYGIVVA-QILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLS 160 (266)
T ss_pred HHhHHHHHHHHHHHHHHcCCeEE-EEEEecccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHH
Confidence 34455555667889999999864 556666666533 222 335578899999999963 222 278999999
Q ss_pred HHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCH--HHHhhc--------CCCcc--hHHHHHHHHhCCCcEEE
Q 024480 165 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTSK--------DLSVM--DMTAITLCQENNIPVVV 232 (267)
Q Consensus 165 a~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~--~e~~~l--------g~g~m--k~~aa~~a~~~Gi~v~I 232 (267)
+++|.+|+|++|+|+|||||||++||+.+|++++|++|++ .|..+. ++|+| |++|++.|.++|++++|
T Consensus 161 a~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I 240 (266)
T PRK12314 161 AIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVL 240 (266)
T ss_pred HHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEE
Confidence 9999999999999999999999999999999999999975 333221 46778 99999999999999999
Q ss_pred EcCCCCCcHHHHhcCCCcceEEecC
Q 024480 233 FNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 233 ~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
+||++|+.+.++++|+..||+|.+.
T Consensus 241 ~~g~~~~~i~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 241 ANGFNPSDILDFLEGESIGTLFAPK 265 (266)
T ss_pred EcCCCchHHHHHHcCCCCceEEccC
Confidence 9999999999999999899999764
|
|
| >PRK13402 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=293.04 Aligned_cols=236 Identities=20% Similarity=0.323 Sum_probs=184.7
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCC-CCCCChHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNS-GLDRSSADYIGMLATV 100 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~-~l~~~~~~~~~~~~~~ 100 (267)
.++++||||||+++++.+ +.++.+.+..++++|+++++.|+++||||||| ++.+...++.. +.+....+.+...++.
T Consensus 4 ~~kriVIKiGgs~L~~~~-~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGa-va~G~~~l~~~~~~~~~~~qalaavGq~ 81 (368)
T PRK13402 4 NWKRIVVKVGSSLLTPHH-QGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGA-VAAGYHKLGFIDRPSVPEKQAMAAAGQG 81 (368)
T ss_pred CCcEEEEEEchhhccCCC-CCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCh-hhcCccccCCCCCCCccHHHHHHHhhHH
Confidence 357999999999998743 47899999999999999999999999999765 55455444311 1111112222233333
Q ss_pred HHHHHHHHHHHHcCCCeeEeeccccccccc--hHH--HHHHHHHhhCCCEEEEeCC-----CCCCCCCcHHHHHHHHHhc
Q 024480 101 MNAIFLQATMESIGIPTRVQTAFRMSEVAE--PYI--RRRAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCAEI 171 (267)
Q Consensus 101 ~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~--~~~--~~~l~~ll~~g~iPIi~g~-----~g~~~~~sD~~Aa~lA~~l 171 (267)
.....+.++|.++|+++. +...+..++.. .|. ++.+..+|+.|+|||++++ .+..|+|||++|+++|.++
T Consensus 82 ~l~~~~~~~f~~~g~~~a-qvLlT~~d~~~~~~y~n~~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~~l 160 (368)
T PRK13402 82 LLMATWSKLFLSHGFPAA-QLLLTHGDLRDRERYINIRNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAALA 160 (368)
T ss_pred HHHHHHHHHHHHCCCeEE-EEEEecchhhhHHHHHHHHHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHHHh
Confidence 333446788999999986 44556666542 343 3445688999999999963 2467899999999999999
Q ss_pred CCcEEEEeeccCccccCCCCCCCCcccccccCH--HHHhh--------cCCCcc--hHHHHHHHHhCCCcEEEEcCCCCC
Q 024480 172 NAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPG 239 (267)
Q Consensus 172 ~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~--~e~~~--------lg~g~m--k~~aa~~a~~~Gi~v~I~ng~~~~ 239 (267)
+||.|+|+|||||||++||+.+|++++|++|++ +|+.+ .|+|+| |++|++.|.++|++++|+|++.|+
T Consensus 161 ~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~ 240 (368)
T PRK13402 161 DADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTAD 240 (368)
T ss_pred CCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCch
Confidence 999999999999999999999999999999986 45443 358899 789999999999999999999999
Q ss_pred cHHHHhcCCCcceEEecCCCC
Q 024480 240 NIAKAIQGERVGTLIGGTWNS 260 (267)
Q Consensus 240 ~i~~~l~g~~~GT~I~~~~~~ 260 (267)
.+.+++.|+..||+|.+...+
T Consensus 241 ~l~~~l~g~~~GT~i~~~~~~ 261 (368)
T PRK13402 241 IFNQLLKGQNPGTYFTPEEKP 261 (368)
T ss_pred HHHHHhcCCCCceEEecCCCC
Confidence 999999999999999876554
|
|
| >PTZ00489 glutamate 5-kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=278.02 Aligned_cols=233 Identities=18% Similarity=0.247 Sum_probs=183.6
Q ss_pred CccCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHH
Q 024480 17 SKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGM 96 (267)
Q Consensus 17 ~~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~ 96 (267)
+....+.+++|||+|||++++++ .++...+..++++++++++ ++++|||| +|++++++..++ +........++
T Consensus 2 ~~~~~~~~riVIKlG~Svit~~~--~~~~~~~~~l~~~i~~l~~-~~~vilVs-sGava~g~~~~~---~~~~~~~~~qa 74 (264)
T PTZ00489 2 ADILKSVKRIVVKVGSSILVDNQ--EIAAHRIEALCRFIADLQT-KYEVILVT-SGAVAAGYTKKE---MDKSYVPNKQA 74 (264)
T ss_pred hhhhhcCCEEEEEeccceeeCCC--CcCHHHHHHHHHHHHHHhc-CCeEEEEe-cChHhcChhhcC---CCccccHHHHH
Confidence 33445688999999999999753 4678899999999999986 79999999 566888877554 33333333455
Q ss_pred HHHHHHHHH---HHHHHHHcCCCeeEeeccccccccc--hHHH--HHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHH
Q 024480 97 LATVMNAIF---LQATMESIGIPTRVQTAFRMSEVAE--PYIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAA 164 (267)
Q Consensus 97 ~~~~~~~~l---~~~~l~~~Gi~~~~~~~~~~~~~~~--~~~~--~~l~~ll~~g~iPIi~g~~-----g~~~~~sD~~A 164 (267)
++++.+..| +.+.|.++|+++. |.+.+..++.. .+.+ +.+.++|+.|.|||+++++ +..|+|||.+|
T Consensus 75 ~aaiGq~~L~~~y~~~f~~~~~~~a-qiLlt~~d~~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lA 153 (264)
T PTZ00489 75 LASMGQPLLMHMYYTELQKHGILCA-QMLLAAYDLDSRKRTINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLS 153 (264)
T ss_pred HHHhCHHHHHHHHHHHHHhCCCeEE-EeeeeccccccchhhHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHH
Confidence 665444333 5677999999985 55566655532 2322 3356899999999999963 33467999999
Q ss_pred HHHHHhcCCcEEEEeeccCccccCCCCCCCCccc---ccccCHHHHhh-------cCCCcc--hHHHHHHHHhCCCcEEE
Q 024480 165 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL---LDTLTYQEVTS-------KDLSVM--DMTAITLCQENNIPVVV 232 (267)
Q Consensus 165 a~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~l---i~~Is~~e~~~-------lg~g~m--k~~aa~~a~~~Gi~v~I 232 (267)
+++|..++||+|+|+|||||||++||+.+|++++ +++++.+++.. .++|+| |++||+.+.++|++++|
T Consensus 154 a~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I 233 (264)
T PTZ00489 154 ALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYL 233 (264)
T ss_pred HHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999999999999987 77888776531 257888 99999999999999999
Q ss_pred EcCCCCCcHHHHhcCC--CcceEEecC
Q 024480 233 FNLNQPGNIAKAIQGE--RVGTLIGGT 257 (267)
Q Consensus 233 ~ng~~~~~i~~~l~g~--~~GT~I~~~ 257 (267)
+||++|+.|.+++.|+ ..||+|.+.
T Consensus 234 ~~g~~~~~i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 234 SSGFHLEKARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred EeCCCchHHHHHHcCCCCCCceEEeec
Confidence 9999999999999875 379999764
|
|
| >cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=280.56 Aligned_cols=230 Identities=20% Similarity=0.222 Sum_probs=180.6
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEE-ECCchHHhhhHHhcCCCC--------------
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV-VGGGNIFRGASAAGNSGL-------------- 86 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViV-hGgG~~~~~~~~~~~~~l-------------- 86 (267)
+.+++|||+|||+|++++++.++.+.+.+++++|++|++.|+++||| ||++++++. .++.++.
T Consensus 7 ~~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~--~l~~~~~~~~~~~~~~~g~~~ 84 (284)
T cd04256 7 HAKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQ--RLRHEILLSSSMRQTLKSGQL 84 (284)
T ss_pred cCCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChH--Hhhhccccccchhhhcccccc
Confidence 46899999999999987645799999999999999999999999955 444566544 3432221
Q ss_pred -C-CChHHHHHHHHHHHHHHH---HHHHHHHcCCCeeEeeccccccccchH--H--HHHHHHHhhCCCEEEEeCCC----
Q 024480 87 -D-RSSADYIGMLATVMNAIF---LQATMESIGIPTRVQTAFRMSEVAEPY--I--RRRAVRHLEKGRVVIFAAGT---- 153 (267)
Q Consensus 87 -~-~~~~~~~~~~~~~~~~~l---~~~~l~~~Gi~~~~~~~~~~~~~~~~~--~--~~~l~~ll~~g~iPIi~g~~---- 153 (267)
. +......+++++..+..| +.+.|..+|+++. |..++..++.++. . ...+..+|+.|+|||+++++
T Consensus 85 ~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~~-q~llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~ 163 (284)
T cd04256 85 KDMPQMELDGRACAAVGQSGLMALYEAMFTQYGITVA-QVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSP 163 (284)
T ss_pred cCCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcHH-HeeeeccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCcccc
Confidence 0 111222456666655544 5667999999875 5566667666432 2 23355789999999999731
Q ss_pred -------C---CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc--------CCCcc
Q 024480 154 -------G---NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVM 215 (267)
Q Consensus 154 -------g---~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l--------g~g~m 215 (267)
+ +.++|||++|+++|.+++||+|+|+|||||||++||+ +|++++|++++..+..++ ++|+|
T Consensus 164 ~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM 242 (284)
T cd04256 164 PPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGM 242 (284)
T ss_pred cccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCc
Confidence 1 2458999999999999999999999999999999996 689999999998665432 57899
Q ss_pred --hHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 216 --DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 216 --k~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|++|+..+.++|++++|+||++|+.+.+++.|+.+||+|.
T Consensus 243 ~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~~ 284 (284)
T cd04256 243 EAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT 284 (284)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEeC
Confidence 8899999999999999999999999999999999999983
|
G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. |
| >PRK05429 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=289.09 Aligned_cols=236 Identities=25% Similarity=0.368 Sum_probs=186.1
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCCh--HHHHHH
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS--ADYIGM 96 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~--~~~~~~ 96 (267)
...+++++|||||||++++++ ++++.+.+.+++++|++++++|+++||||| |++++++..++ +...+ ....++
T Consensus 4 ~~~~~~~iVIKiGGs~l~~~~-~~l~~~~i~~la~~I~~l~~~g~~vViV~s-Gai~~g~~~l~---l~~~~~~~~~~qa 78 (372)
T PRK05429 4 ALSDARRIVVKVGSSLLTGGG-GGLDRARIAELARQIAALRAAGHEVVLVSS-GAVAAGRERLG---LPERPKTLAEKQA 78 (372)
T ss_pred chhhCCEEEEEeChhhccCCC-CCcCHHHHHHHHHHHHHHHHCCCeEEEEcc-cHhhhhHhhcC---CCCCCCchHHHHH
Confidence 334678999999999999863 478999999999999999999999999995 57777665554 33222 222334
Q ss_pred HHHH---HHHHHHHHHHHHcCCCeeEeeccccccccc--hHHH--HHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHH
Q 024480 97 LATV---MNAIFLQATMESIGIPTRVQTAFRMSEVAE--PYIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAA 164 (267)
Q Consensus 97 ~~~~---~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~--~~~~--~~l~~ll~~g~iPIi~g~~-----g~~~~~sD~~A 164 (267)
++.. ....++.++|.++|+++. +...+..++.. .|++ ..+..+++.|+|||+++++ +..++|||++|
T Consensus 79 ~aavGq~~L~~~~~~~l~~~gi~~~-qil~t~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~A 157 (372)
T PRK05429 79 AAAVGQSRLMQAYEELFARYGITVA-QILLTRDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLS 157 (372)
T ss_pred HHHHhHHHHHHHHHHHHHHCCCCEE-EEEeehhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHH
Confidence 4433 233356788999999975 43444444432 2444 2345788999999999632 34679999999
Q ss_pred HHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCH--HHHhh--------cCCCcc--hHHHHHHHHhCCCcEEE
Q 024480 165 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTS--------KDLSVM--DMTAITLCQENNIPVVV 232 (267)
Q Consensus 165 a~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~--~e~~~--------lg~g~m--k~~aa~~a~~~Gi~v~I 232 (267)
+++|.+|+|++|+|+|||||||++||+.+|++++|++|++ +|+.+ .++|+| |++|+..+.++|++++|
T Consensus 158 a~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I 237 (372)
T PRK05429 158 ALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVI 237 (372)
T ss_pred HHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEE
Confidence 9999999999999999999999999999999999999987 44443 257788 88999999999999999
Q ss_pred EcCCCCCcHHHHhcCCCcceEEecCCCC
Q 024480 233 FNLNQPGNIAKAIQGERVGTLIGGTWNS 260 (267)
Q Consensus 233 ~ng~~~~~i~~~l~g~~~GT~I~~~~~~ 260 (267)
+|+++|+.+.++++|+..||+|.+..+.
T Consensus 238 ~~g~~~~~l~~~l~g~~~GT~i~~~~~~ 265 (372)
T PRK05429 238 ASGREPDVLLRLLAGEAVGTLFLPQEKP 265 (372)
T ss_pred EcCCCccHHHHHhcCCCCCEEEeeCCcc
Confidence 9999999999999999999999976554
|
|
| >cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=272.10 Aligned_cols=224 Identities=25% Similarity=0.412 Sum_probs=175.1
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcCCCCCCC--hH---HHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGNSGLDRS--SA---DYIGMLA 98 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~~~l~~~--~~---~~~~~~~ 98 (267)
++|||||||++++++. .++.+.+.+++++|++++++|+++|||||| |++++. .++ +... .. +.+...+
T Consensus 1 ~iViK~GGs~i~~~~~-~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~--~~~---~~~~~~~~~~~~~~~~~G 74 (251)
T cd04242 1 RIVVKVGSSLLTDEDG-GLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQ--RLG---LEKRPKTLPEKQALAAVG 74 (251)
T ss_pred CEEEEeCCCeeeCCCC-CcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChh--hhc---cCcCCCchhHHHHHHHHh
Confidence 5899999999998754 247899999999999999999999999965 555432 222 2221 11 2222334
Q ss_pred HHHHHHHHHHHHHHcCCCeeEeeccccccccch--HHH--HHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHH
Q 024480 99 TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCA 169 (267)
Q Consensus 99 ~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~--~~~--~~l~~ll~~g~iPIi~g~~-----g~~~~~sD~~Aa~lA~ 169 (267)
+.....+++++|.++|+++. +...+..++... +.+ ..+..+|+.|+|||+++++ +..++|+|++|+++|.
T Consensus 75 q~~l~~~~~~~l~~~Gi~~~-q~l~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~ 153 (251)
T cd04242 75 QSLLMALYEQLFAQYGIKVA-QILLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAG 153 (251)
T ss_pred HHHHHHHHHHHHHHcCCeEE-EEEEehhHhcchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHH
Confidence 44444567789999999975 333444444322 211 2345788999999999732 2467899999999999
Q ss_pred hcCCcEEEEeeccCccccCCCCCCCCcccccccC--HHHHhhc--------CCCcc--hHHHHHHHHhCCCcEEEEcCCC
Q 024480 170 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT--YQEVTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQ 237 (267)
Q Consensus 170 ~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is--~~e~~~l--------g~g~m--k~~aa~~a~~~Gi~v~I~ng~~ 237 (267)
+|+|++|+|+|||||||++||+.+|++++|++|+ ++|+.++ ++++| |++++..+.++|++++|+|+++
T Consensus 154 ~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~ 233 (251)
T cd04242 154 LVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRK 233 (251)
T ss_pred HcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 9999999999999999999999999999999999 8876543 57888 7799999999999999999999
Q ss_pred CCcHHHHhcCCCcceEEe
Q 024480 238 PGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 238 ~~~i~~~l~g~~~GT~I~ 255 (267)
|+.+.++|+|+..||+|.
T Consensus 234 ~~~i~~~l~g~~~GT~i~ 251 (251)
T cd04242 234 PDVLLDILAGEAVGTLFL 251 (251)
T ss_pred CCHHHHHHcCCCCCeEeC
Confidence 999999999999999984
|
G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir |
| >cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=263.97 Aligned_cols=211 Identities=30% Similarity=0.508 Sum_probs=176.9
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHh-cCCCCCCChHHHHHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GNSGLDRSSADYIGMLATVMNA 103 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~ 103 (267)
++|||||||++++++ +.+.+++++++|+++.. ++++|||||||++++.+... ...+++....|+++..++.+|.
T Consensus 1 ~iViKlGGs~l~~~~----~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln~ 75 (221)
T cd04253 1 RIVISLGGSVLAPEK----DADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLNA 75 (221)
T ss_pred CEEEEeccceeCCCC----ChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 579999999997542 67899999999998765 78999999999999887543 2234554567888888899999
Q ss_pred HHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 024480 104 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 183 (267)
Q Consensus 104 ~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVd 183 (267)
.++...+. .|+++.+.+ .+.+.++|+.|.|||++|+. +..++|++|+++|.+|+|++|+++||||
T Consensus 76 ~~~~~~l~-~~~~~~~~~------------~~~~~~~l~~g~vpv~~G~~--~~~s~D~~a~~lA~~l~a~~li~~tdVd 140 (221)
T cd04253 76 RLLIAALG-DAYPPVPTS------------YEEALEAMFTGKIVVMGGTE--PGQSTDAVAALLAERLGADLLINATNVD 140 (221)
T ss_pred HHHHHHHh-cCCCcCCCC------------HHHHHHHHHcCCeEEEECCC--CCCccHHHHHHHHHHcCCCEEEEEeCCC
Confidence 88876666 787654321 12456789999999999974 4579999999999999999999999999
Q ss_pred ccccCCCCCCCCcccccccCHHHHhhc--------CC-CcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEE
Q 024480 184 GVYDDNPRRNPNARLLDTLTYQEVTSK--------DL-SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254 (267)
Q Consensus 184 GVy~~dP~~~~~a~li~~Is~~e~~~l--------g~-g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I 254 (267)
|||++||+.+|++++|++|+++|+.++ |+ +.+|+.+++++.++|++++|+|+++|+.|.++|+|+.+||+|
T Consensus 141 GVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I 220 (221)
T cd04253 141 GVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTII 220 (221)
T ss_pred eeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEe
Confidence 999999999999999999999888764 22 245999999999999999999999999999999999999998
Q ss_pred e
Q 024480 255 G 255 (267)
Q Consensus 255 ~ 255 (267)
.
T Consensus 221 ~ 221 (221)
T cd04253 221 E 221 (221)
T ss_pred C
Confidence 4
|
The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi |
| >TIGR01027 proB glutamate 5-kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=279.52 Aligned_cols=231 Identities=28% Similarity=0.408 Sum_probs=181.5
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCCh--HHHHHHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS--ADYIGMLATVM 101 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~ 101 (267)
+++|||||||++++++. .++.+.+.+++++|++++++|+++||||||| .+.++..++ +..++ ....++++...
T Consensus 1 ~riVIKiGgs~l~~~~~-~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~-~~~g~~~lg---~~~~~~~l~~~qa~aa~G 75 (363)
T TIGR01027 1 QRIVVKVGSSSLTGSSG-SLDRSHIAELVEQVAALHAAGHEVVIVSSGA-IAAGFEALG---LPERPKTLAEKQALAAVG 75 (363)
T ss_pred CeEEEEeccceEeCCCC-CcCHHHHHHHHHHHHHHHHCCCeEEEEeCcH-HhcCccccC---CCCCccchHHHHHHHHhC
Confidence 47999999999998654 3899999999999999999999999999854 444554443 43332 22234444433
Q ss_pred HH---HHHHHHHHHcCCCeeEeeccccccccc--hHHHH--HHHHHhhCCCEEEEeCC-----CCCCCCCcHHHHHHHHH
Q 024480 102 NA---IFLQATMESIGIPTRVQTAFRMSEVAE--PYIRR--RAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCA 169 (267)
Q Consensus 102 ~~---~l~~~~l~~~Gi~~~~~~~~~~~~~~~--~~~~~--~l~~ll~~g~iPIi~g~-----~g~~~~~sD~~Aa~lA~ 169 (267)
+. .++.+.|.++|+++. +.+.+..++.. .|.|. .+..+|+.|.|||++.+ .+..++|||++|+++|.
T Consensus 76 q~~l~~~~~~~l~~~Gi~~a-qillt~~d~~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~ 154 (363)
T TIGR01027 76 QVRLMQLYEQLFSQYGIKVA-QILLTRADFSDRERYLNARNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAI 154 (363)
T ss_pred hHHHHHHHHHHHHHcCCeEE-EEEEeccchhhHHHHHHHHHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHH
Confidence 33 345678999999974 54555555543 34442 24578899999999953 23457899999999999
Q ss_pred hcCCcEEEEeeccCccccCCCCCCCCcccccccCHH--HHhh--------cCCCcc--hHHHHHHHHhCCCcEEEEcCCC
Q 024480 170 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ--EVTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQ 237 (267)
Q Consensus 170 ~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~--e~~~--------lg~g~m--k~~aa~~a~~~Gi~v~I~ng~~ 237 (267)
+++||+|+|+|||||||++||+.+|++++|++|++. ++.+ .++|+| |++|+..|.+.|++++|+|+++
T Consensus 155 ~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~ 234 (363)
T TIGR01027 155 LVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSK 234 (363)
T ss_pred HcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence 999999999999999999999999999999999863 2221 367889 7889999999999999999999
Q ss_pred CCcHHHHhcCCCcceEEecCCCC
Q 024480 238 PGNIAKAIQGERVGTLIGGTWNS 260 (267)
Q Consensus 238 ~~~i~~~l~g~~~GT~I~~~~~~ 260 (267)
|+.+.++++|+..||+|.+..+.
T Consensus 235 ~~~l~~~l~g~~~GT~i~~~~~~ 257 (363)
T TIGR01027 235 PEKIADALEGAPVGTLFHAQARR 257 (363)
T ss_pred ccHHHHHhcCCCCcEEEeeCCCC
Confidence 99999999999899999876554
|
Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family. |
| >TIGR02076 pyrH_arch uridylate kinase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=260.14 Aligned_cols=211 Identities=30% Similarity=0.485 Sum_probs=176.9
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHh-cCCCCCCChHHHHHHHHHHHHHH
Q 024480 26 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GNSGLDRSSADYIGMLATVMNAI 104 (267)
Q Consensus 26 iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 104 (267)
+|||||||++++++ +.+.+++++++|++++++ +++|||||||++++.+... ...++.....+++++.++++|..
T Consensus 1 iViKlGGs~l~~~~----~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~~ 75 (221)
T TIGR02076 1 IVISLGGSVLSPEI----DAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNAM 75 (221)
T ss_pred CEEEechhhcCCCC----CHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHHH
Confidence 58999999999752 688999999999999876 8999999999998776432 21334444678888889999999
Q ss_pred HHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCc
Q 024480 105 FLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDG 184 (267)
Q Consensus 105 l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdG 184 (267)
++...|...++++.+.+ .....+.++.|.+||++|+. +..++|++|+++|.+++|++|+++|||||
T Consensus 76 ~l~~ll~~~~~~~~~~~------------~~~~~~~l~~g~ipv~~G~~--~~~s~D~~A~~lA~~l~A~~li~ltdVdG 141 (221)
T TIGR02076 76 LLIAALGDDAYPKVPEN------------FEEALEAMSLGKIVVMGGTH--PGHTTDAVAALLAEFSKADLLINATNVDG 141 (221)
T ss_pred HHHHHHHhcCCCCcCCC------------HHHHHHHHHcCCEEEEcCCC--CCCCcHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 88877877777765321 11345788899999999974 56899999999999999999999999999
Q ss_pred cccCCCCCCCCcccccccCHHHHhhc------CCC---cchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 185 VYDDNPRRNPNARLLDTLTYQEVTSK------DLS---VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 185 Vy~~dP~~~~~a~li~~Is~~e~~~l------g~g---~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
||++||+.+|++++|++|+++|+.++ +.+ .+|+.+++.+.+.|++++|+|+++|+.+.++++|+..||+|.
T Consensus 142 vy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 221 (221)
T TIGR02076 142 VYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTIIE 221 (221)
T ss_pred ccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEeC
Confidence 99999999999999999999887764 234 348999999999999999999999999999999998999984
|
This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP. |
| >cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=268.70 Aligned_cols=222 Identities=22% Similarity=0.325 Sum_probs=173.5
Q ss_pred eEEEEeccccccCCC-CCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCC--C-----hHHHHHH
Q 024480 25 RVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR--S-----SADYIGM 96 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~-~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~--~-----~~~~~~~ 96 (267)
++|||+|||+|++++ ++.++.+.+++++++|++++ |+++|||||||++++.... .+++++ + .....++
T Consensus 1 ~iVIKiGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~--~~g~~~g~~~~~~~~l~~~~~ 76 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAK--EYGLPDGDGSFSAEGVAETHE 76 (252)
T ss_pred CEEEEEeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHHH--HhCCCcCCCchhhhhHHHHHH
Confidence 589999999999875 36789999999999999987 8999999999998765322 234431 1 1222333
Q ss_pred HHHHHHHHHHHHHHHHcCCCeeEeeccccccc--cch-HHH-HHHHHHhhCCCEEEEeCC---CC---CCCCCcHHHHHH
Q 024480 97 LATVMNAIFLQATMESIGIPTRVQTAFRMSEV--AEP-YIR-RRAVRHLEKGRVVIFAAG---TG---NPFFTTDTAAAL 166 (267)
Q Consensus 97 ~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~--~~~-~~~-~~l~~ll~~g~iPIi~g~---~g---~~~~~sD~~Aa~ 166 (267)
....+|.. +.++|.++|+++.++++.+.... ++. .++ +.+.++|+.|+|||++|+ .+ ..++++|++|+.
T Consensus 77 ~~~~ln~~-~~~~l~~~g~~a~~l~~~~~~~~~~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~ 155 (252)
T cd04241 77 AMLELNSI-VVDALLEAGVPAVSVPPSSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVE 155 (252)
T ss_pred HHHHHHHH-HHHHHHHCCCCeEEEChHHeEEecCCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHH
Confidence 33456765 45788889999987766543211 010 122 335689999999999984 11 246899999999
Q ss_pred HHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc----------CCCcc--hHHHHHHHHhCCCcEEEEc
Q 024480 167 RCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----------DLSVM--DMTAITLCQENNIPVVVFN 234 (267)
Q Consensus 167 lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l----------g~g~m--k~~aa~~a~~~Gi~v~I~n 234 (267)
+|.+|+|++|+|+|||||||++|| |++++|++++++|++++ .+|+| |+++|..+.++|++++|+|
T Consensus 156 lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~ 232 (252)
T cd04241 156 LAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFN 232 (252)
T ss_pred HHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 999999999999999999999999 78999999998655432 35788 8999999999999999999
Q ss_pred CCCCCcHHHHhcCCCcceEE
Q 024480 235 LNQPGNIAKAIQGERVGTLI 254 (267)
Q Consensus 235 g~~~~~i~~~l~g~~~GT~I 254 (267)
+++|+.+.++++|+.+||+|
T Consensus 233 g~~~~~l~~~l~g~~~GT~i 252 (252)
T cd04241 233 GDKPENLYRALLGNFIGTRI 252 (252)
T ss_pred CCCHHHHHHHHcCCCCceEC
Confidence 99999999999999899986
|
Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). |
| >cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=261.75 Aligned_cols=226 Identities=21% Similarity=0.309 Sum_probs=176.8
Q ss_pred CCCCCccCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHh-cCCCCCCChH
Q 024480 13 DNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GNSGLDRSSA 91 (267)
Q Consensus 13 ~~~~~~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~-~~~~l~~~~~ 91 (267)
+.|.-..+.--.++|||+|||+|+++ +.+.+++++++|+++++ +++++||||||++++.+... ...+++....
T Consensus 20 ~~~~~~~~~~~~~~ViKiGGSvitdk-----~~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~ 93 (262)
T cd04255 20 LAGKEQFRLLPDLNVVKIGGQSIIDR-----GAEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPTGVL 93 (262)
T ss_pred cccCCceecCCCcEEEEeccceecCC-----cHHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCchHH
Confidence 33444444555679999999999987 35789999999999876 68999999999998654321 1245655667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCC------------CCCCC
Q 024480 92 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTG------------NPFFT 159 (267)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g------------~~~~~ 159 (267)
+..++.+..+|..++.++|..+|+++... .++ ..+.++|+.|+|||++|+++ .+++|
T Consensus 94 ~~~~~aa~~ln~lv~~~~l~~~g~~~i~~-----~~~------~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~ 162 (262)
T cd04255 94 AKLGASVSEQNAEMLATLLAKHGGSKVGH-----GDL------LQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHR 162 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccc-----ccH------HHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCC
Confidence 77888888888887777888889876311 111 24668999999999999732 45789
Q ss_pred cHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc--CCCcchHHH--HHHHHhCCCcEEEEcC
Q 024480 160 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--DLSVMDMTA--ITLCQENNIPVVVFNL 235 (267)
Q Consensus 160 sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l--g~g~mk~~a--a~~a~~~Gi~v~I~ng 235 (267)
+|++|+++|.+++|++|+++|||||||++||+.+|++++|++|++.|+.++ +...|.-.+ ...+.+..++++|+||
T Consensus 163 ~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g 242 (262)
T cd04255 163 TDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNG 242 (262)
T ss_pred cHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCCCCCcHHHHHHHHHhCCCCcEEEEeC
Confidence 999999999999999999999999999999999999999999999887664 233463322 2222333468999999
Q ss_pred CCCCcHHHHhcCCCcceEEe
Q 024480 236 NQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 236 ~~~~~i~~~l~g~~~GT~I~ 255 (267)
++|+++.+++.|+.+||+|+
T Consensus 243 ~~~~~L~~~l~g~~~GT~i~ 262 (262)
T cd04255 243 LVPGNLTRALRGEHVGTIIR 262 (262)
T ss_pred CCCCHHHHHHcCCCCceEeC
Confidence 99999999999999999984
|
The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). |
| >cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=264.09 Aligned_cols=220 Identities=26% Similarity=0.369 Sum_probs=176.2
Q ss_pred EEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhH-HhcC-------CCCCCChHHHHHHHH
Q 024480 27 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-------SGLDRSSADYIGMLA 98 (267)
Q Consensus 27 VIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~-~~~~-------~~l~~~~~~~~~~~~ 98 (267)
|||||||++++ .+.+++++++|+.+++.|+++|||||||++.+... ..+. ...+....+.+...+
T Consensus 1 ViKiGGs~l~~-------~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (248)
T cd02115 1 VIKFGGSSVSS-------EERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMG 73 (248)
T ss_pred CEeeCccccCC-------HHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHH
Confidence 79999999984 46899999999999888999999999998765432 2211 112223334455566
Q ss_pred HHHHHHHHHHHHHHcCCCeeEeecccccccc-------c--hHHHHHHHHHhhCCCEEEEeCCCC--------CCCCCcH
Q 024480 99 TVMNAIFLQATMESIGIPTRVQTAFRMSEVA-------E--PYIRRRAVRHLEKGRVVIFAAGTG--------NPFFTTD 161 (267)
Q Consensus 99 ~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-------~--~~~~~~l~~ll~~g~iPIi~g~~g--------~~~~~sD 161 (267)
+..+..++.++|.++|+++..+.+.+..... . ....+.+.++|+.+.|||++|+.. .+++++|
T Consensus 74 ~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD 153 (248)
T cd02115 74 EGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSD 153 (248)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEchHHcCeEeCCCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHH
Confidence 6777778889999999998877665432211 0 111234667899999999999732 2579999
Q ss_pred HHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCC
Q 024480 162 TAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQP 238 (267)
Q Consensus 162 ~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~ 238 (267)
++|+.+|.+|+|++|+|+|||||||++||+.+|++++|++|+++|+.++ |.+.+|++++..+.++|++++|+|+++|
T Consensus 154 ~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~ 233 (248)
T cd02115 154 STAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENP 233 (248)
T ss_pred HHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCc
Confidence 9999999999999999999999999999999999999999999888765 4555699999999999999999999999
Q ss_pred CcHHHHhcCCCcceEE
Q 024480 239 GNIAKAIQGERVGTLI 254 (267)
Q Consensus 239 ~~i~~~l~g~~~GT~I 254 (267)
+++ ++|.+++.||+|
T Consensus 234 ~~l-~~~~~~~~GT~I 248 (248)
T cd02115 234 GAL-ALFTPDGGGTLI 248 (248)
T ss_pred ccc-cccCCCCCCCCC
Confidence 999 999999899986
|
The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. |
| >COG1608 Predicted archaeal kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=254.00 Aligned_cols=224 Identities=25% Similarity=0.365 Sum_probs=173.0
Q ss_pred EEEEeccccccCCCC-CCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCC-------CCChHHHHHHH
Q 024480 26 VLLKVSGEALAGDHT-QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL-------DRSSADYIGML 97 (267)
Q Consensus 26 iVIKiGGs~l~~~~~-~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l-------~~~~~~~~~~~ 97 (267)
+|+|+|||+||+|+. ++++.+.+++++.+|++ ..-.++|||||||+|+|.+. .++++ ++.-....+..
T Consensus 3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~A--k~~~~~~~~~~~s~~G~~~~~~a 78 (252)
T COG1608 3 IILKLGGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAA--KEFGLEGLKNYLSPLGFSLTHLA 78 (252)
T ss_pred EEEEecceeeecCCCcchhhHHHHHHHHHHHhc--CCcccEEEEecCccccCHHH--HHhCccccccccCccchHHHHHH
Confidence 899999999999984 79999999999999986 12248999999999987653 33344 11112233344
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEeecccc----ccccchHHHHHHHHHhhCCCEEEEeCC----C--CCCCCCcHHHHHHH
Q 024480 98 ATVMNAIFLQATMESIGIPTRVQTAFRM----SEVAEPYIRRRAVRHLEKGRVVIFAAG----T--GNPFFTTDTAAALR 167 (267)
Q Consensus 98 ~~~~~~~l~~~~l~~~Gi~~~~~~~~~~----~~~~~~~~~~~l~~ll~~g~iPIi~g~----~--g~~~~~sD~~Aa~l 167 (267)
...++..+ .++|.+.|+.+++..+.+. +.+...+ -..+.++++.|++|+++|+ . |..++|+|.++.+|
T Consensus 79 m~~L~~~V-~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~-l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~L 156 (252)
T COG1608 79 MLELNSIV-VDALLDAGVRAVSVVPISFSTFNGRILYTY-LEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHL 156 (252)
T ss_pred HHHHHHHH-HHHHHhcCCccccccCcceeecCCceeech-HHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHH
Confidence 44566654 4688889998853222222 1111111 1345689999999999996 2 34569999999999
Q ss_pred HHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhh-c----CCCcc--hHHHHHHHHhCCCcEEEEcCCCCCc
Q 024480 168 CAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS-K----DLSVM--DMTAITLCQENNIPVVVFNLNQPGN 240 (267)
Q Consensus 168 A~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~-l----g~g~m--k~~aa~~a~~~Gi~v~I~ng~~~~~ 240 (267)
|+.|++|+++|+|||||||+.||.+.|+++.++++....... - -||+| |++++....+++.+++|+||++|++
T Consensus 157 A~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~n 236 (252)
T COG1608 157 AKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPEN 236 (252)
T ss_pred HHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHH
Confidence 999999999999999999999999999999998887643221 1 16788 9999999999999999999999999
Q ss_pred HHHHhcCCCcceEEe
Q 024480 241 IAKAIQGERVGTLIG 255 (267)
Q Consensus 241 i~~~l~g~~~GT~I~ 255 (267)
|.++++|+.+||+|.
T Consensus 237 i~~~l~G~~vGT~I~ 251 (252)
T COG1608 237 IYRALRGENVGTRID 251 (252)
T ss_pred HHHHhcCCCCceEec
Confidence 999999999999986
|
|
| >cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=254.95 Aligned_cols=204 Identities=26% Similarity=0.320 Sum_probs=166.5
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCc-hHHhhhHHhcCCCCCCChHHHHHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG-NIFRGASAAGNSGLDRSSADYIGMLATVMNA 103 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 103 (267)
++|+|||||++. +.+.+++++++|+++ +.|+++||||||+ .+++.+..+. .+..+++.++.
T Consensus 1 ~iViK~GGs~l~-------~~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~----------~~~s~Ge~~~~ 62 (227)
T cd04234 1 MVVQKFGGTSVA-------SAERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA----------LLLSFGERLSA 62 (227)
T ss_pred CEEEEECccccC-------CHHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH----------HHHHHHHHHHH
Confidence 579999999998 456899999999999 8899999999774 4544443221 34457788898
Q ss_pred HHHHHHHHHcCCCeeEeeccccccccc-------hH-H-HHHHHHHhhC-CCEEEEeCCCC---C------CCCCcHHHH
Q 024480 104 IFLQATMESIGIPTRVQTAFRMSEVAE-------PY-I-RRRAVRHLEK-GRVVIFAAGTG---N------PFFTTDTAA 164 (267)
Q Consensus 104 ~l~~~~l~~~Gi~~~~~~~~~~~~~~~-------~~-~-~~~l~~ll~~-g~iPIi~g~~g---~------~~~~sD~~A 164 (267)
.++.++|+++|+++..+++.+...... .+ . .+.+.++++. |.|||++||.+ + .+++||++|
T Consensus 63 ~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A 142 (227)
T cd04234 63 RLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSA 142 (227)
T ss_pred HHHHHHHHHCCCCeEEeCHHHCCEEcCCccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHH
Confidence 889999999999998877655422211 11 1 2335578899 99999999622 1 235899999
Q ss_pred HHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcH
Q 024480 165 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNI 241 (267)
Q Consensus 165 a~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i 241 (267)
+++|.+|+|++|+|||||||||+.||+.+|++++|++++++|+.++ |.+.||+.|+++|.++|++++|.|+++|+
T Consensus 143 ~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~-- 220 (227)
T cd04234 143 AALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE-- 220 (227)
T ss_pred HHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC--
Confidence 9999999999999999999999999999999999999999998775 78899999999999999999999999887
Q ss_pred HHHhcCCCcceEEe
Q 024480 242 AKAIQGERVGTLIG 255 (267)
Q Consensus 242 ~~~l~g~~~GT~I~ 255 (267)
..||+|.
T Consensus 221 -------~~gT~I~ 227 (227)
T cd04234 221 -------APGTLIT 227 (227)
T ss_pred -------CCCCEeC
Confidence 5699984
|
AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd |
| >cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=256.91 Aligned_cols=214 Identities=24% Similarity=0.313 Sum_probs=169.1
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhc-CCC--CCCChHHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAG-NSG--LDRSSADYIGMLATV 100 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~-~~~--l~~~~~~~~~~~~~~ 100 (267)
.+||||||+++. +.+.+++++++|+.+.+.|+++|||||| |.....+.... ... .+....+.+...+++
T Consensus 1 ~iViK~GGs~l~-------~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~~~~~~~~~~~i~a~Ge~ 73 (239)
T cd04261 1 LIVQKFGGTSVA-------SIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQ 73 (239)
T ss_pred CEEEEECCcccC-------CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 379999999997 5678999999999999999999999987 55554443221 111 112233444455678
Q ss_pred HHHHHHHHHHHHcCCCeeEeecccccc-----cc--c-hHHH-HHHHHHhhCCCEEEEeCCCC---C------CCCCcHH
Q 024480 101 MNAIFLQATMESIGIPTRVQTAFRMSE-----VA--E-PYIR-RRAVRHLEKGRVVIFAAGTG---N------PFFTTDT 162 (267)
Q Consensus 101 ~~~~l~~~~l~~~Gi~~~~~~~~~~~~-----~~--~-~~~~-~~l~~ll~~g~iPIi~g~~g---~------~~~~sD~ 162 (267)
+++.++.+.|.++|+++.++++.+... +. + .+.+ +.+.+++++|+|||++|+.+ + .+++||+
T Consensus 74 ~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~ 153 (239)
T cd04261 74 VSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDT 153 (239)
T ss_pred HHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHH
Confidence 888888899999999998877655321 11 1 1223 34567899999999998732 1 2459999
Q ss_pred HHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCC
Q 024480 163 AAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPG 239 (267)
Q Consensus 163 ~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~ 239 (267)
+|+.+|.+|+|++|++||||||||++||+.+|+++++++++++|+.++ |.+.+|++|+++|.++|++++|.|+++|+
T Consensus 154 ~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~ 233 (239)
T cd04261 154 SAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE 233 (239)
T ss_pred HHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC
Confidence 999999999999999999999999999999999999999999998874 77788999999999999999999999885
Q ss_pred cHHHHhcCCCcceEEe
Q 024480 240 NIAKAIQGERVGTLIG 255 (267)
Q Consensus 240 ~i~~~l~g~~~GT~I~ 255 (267)
.||+|+
T Consensus 234 ----------~gt~i~ 239 (239)
T cd04261 234 ----------PGTLIT 239 (239)
T ss_pred ----------CCcEeC
Confidence 599884
|
In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and |
| >cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=255.96 Aligned_cols=214 Identities=26% Similarity=0.354 Sum_probs=167.9
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHH-hcCC--CCCCChHHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASA-AGNS--GLDRSSADYIGMLATV 100 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~-~~~~--~l~~~~~~~~~~~~~~ 100 (267)
.+||||||+++. +.+.+++++++|+++++.|+++|||||| |...+.+.. .+.. ..+....+.+.+.++.
T Consensus 1 ~iViK~GGs~l~-------~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~ 73 (239)
T cd04246 1 IIVQKFGGTSVA-------DIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQ 73 (239)
T ss_pred CEEEEECccccC-------CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHH
Confidence 379999999998 4578999999999999889999999985 555444432 2210 1122234445556677
Q ss_pred HHHHHHHHHHHHcCCCeeEeeccccccc-----cc---hHHH-HHHHHHhhCCCEEEEeCCCC---C------CCCCcHH
Q 024480 101 MNAIFLQATMESIGIPTRVQTAFRMSEV-----AE---PYIR-RRAVRHLEKGRVVIFAAGTG---N------PFFTTDT 162 (267)
Q Consensus 101 ~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-----~~---~~~~-~~l~~ll~~g~iPIi~g~~g---~------~~~~sD~ 162 (267)
++..++.+.|+++|+++.++++.+...+ .. ..++ +.+.+++++|.|||++|+.+ . .++++|+
T Consensus 74 ~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~ 153 (239)
T cd04246 74 ISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDT 153 (239)
T ss_pred HHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHH
Confidence 8888888999999999987766543211 11 1123 34567899999999998622 1 2458999
Q ss_pred HHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCC
Q 024480 163 AAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPG 239 (267)
Q Consensus 163 ~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~ 239 (267)
+|+.+|.+|+|++|+|||||||||++||+.+|+++++++++++|+.++ |...||++|++++.++|+|++|.|+++|+
T Consensus 154 ~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~ 233 (239)
T cd04246 154 TAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN 233 (239)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC
Confidence 999999999999999999999999999999999999999999998774 67788999999999999999999998875
Q ss_pred cHHHHhcCCCcceEEe
Q 024480 240 NIAKAIQGERVGTLIG 255 (267)
Q Consensus 240 ~i~~~l~g~~~GT~I~ 255 (267)
.||+|+
T Consensus 234 ----------~gt~i~ 239 (239)
T cd04246 234 ----------PGTLIT 239 (239)
T ss_pred ----------CCcEeC
Confidence 499884
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati |
| >COG0527 LysC Aspartokinases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=272.62 Aligned_cols=220 Identities=26% Similarity=0.334 Sum_probs=180.7
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCch-HHhhhH-Hhc-------------------
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN-IFRGAS-AAG------------------- 82 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~-~~~~~~-~~~------------------- 82 (267)
+++|.||||+++. +.+.++++++.+++..+.|.++|+|++++. ..+.+. .+.
T Consensus 2 ~~iV~KFGGTSva-------~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~ 74 (447)
T COG0527 2 RLIVQKFGGTSVA-------DAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIAS 74 (447)
T ss_pred ceEEEEeCCcccC-------CHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 3899999999998 578999999999999888999999998853 322221 111
Q ss_pred C--CC--------------------------CCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccch-H-
Q 024480 83 N--SG--------------------------LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-Y- 132 (267)
Q Consensus 83 ~--~~--------------------------l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~-~- 132 (267)
. .. .+++..|.+..+++++++.+++.+|++.|+++.++++++....... +
T Consensus 75 el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~ 154 (447)
T COG0527 75 ELILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHG 154 (447)
T ss_pred HHhhcchhhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCccc
Confidence 0 00 1224456677788999999999999999999999988765433221 1
Q ss_pred ------H-HHH-HHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCC
Q 024480 133 ------I-RRR-AVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN 195 (267)
Q Consensus 133 ------~-~~~-l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~ 195 (267)
. .+. +..+++.+.|||++||.| ..+++||++|++||.+|+||+|.+||||||||+.|||..|+
T Consensus 155 ~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~ 234 (447)
T COG0527 155 NARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPD 234 (447)
T ss_pred ccccchhhhhhhHHHHhcCCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCc
Confidence 1 123 556788999999999844 24789999999999999999999999999999999999999
Q ss_pred cccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCCC
Q 024480 196 ARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 259 (267)
Q Consensus 196 a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~~ 259 (267)
|++|++|||+|+.|+ |++.+|++|+.+|.+++||++|.|.++|+ ..||+|..+..
T Consensus 235 Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p~---------~~GTlI~~~~~ 292 (447)
T COG0527 235 ARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPD---------APGTLITAETE 292 (447)
T ss_pred ceEcCccCHHHHHHHHHCCchhcCHHHHHHHHhcCCcEEEEecCCCC---------CCceEEecCCc
Confidence 999999999999875 89999999999999999999999999987 57999997754
|
|
| >PRK08841 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=267.82 Aligned_cols=218 Identities=22% Similarity=0.292 Sum_probs=174.8
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCch-HHhhhHHhc-C-CCC-CCChHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN-IFRGASAAG-N-SGL-DRSSADYIGMLA 98 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~-~~~~~~~~~-~-~~l-~~~~~~~~~~~~ 98 (267)
|+++|+||||+++. +.+.+++++++|+.+.+.|+++|+||||+. ..+.+..+. . ... +++..+.+...+
T Consensus 1 m~~~V~KfGGtsv~-------~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~~~~~~~~~~d~l~s~G 73 (392)
T PRK08841 1 MPLIVQKFGGTSVG-------SIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAG 73 (392)
T ss_pred CCeEEEeECcccCC-------CHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhhccCCCHHHHHHHHHHH
Confidence 45899999999998 568999999999999999999999998854 444432221 1 111 122356666788
Q ss_pred HHHHHHHHHHHHHHcCCCeeEeecccccccc-----ch---HHH-HHHHHHhhCCCEEEEeCCCC---------CCCCCc
Q 024480 99 TVMNAIFLQATMESIGIPTRVQTAFRMSEVA-----EP---YIR-RRAVRHLEKGRVVIFAAGTG---------NPFFTT 160 (267)
Q Consensus 99 ~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-----~~---~~~-~~l~~ll~~g~iPIi~g~~g---------~~~~~s 160 (267)
+.++..+++.+|++.|+++.++++++...+. .. .++ +.+.++++.|.|||++||.+ ..+++|
T Consensus 74 E~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggs 153 (392)
T PRK08841 74 EQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGS 153 (392)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCCh
Confidence 8889999999999999999988876642211 11 122 33557889999999999743 135699
Q ss_pred HHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCC
Q 024480 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQ 237 (267)
Q Consensus 161 D~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~ 237 (267)
|++|+.+|.+|+|++|++||||||||++||+.+|+|+++++|+|+|+.++ |...+|++|+++|.++|+|++|.|+++
T Consensus 154 D~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~ 233 (392)
T PRK08841 154 DTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFE 233 (392)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCC
Confidence 99999999999999999999999999999999999999999999988775 788899999999999999999999986
Q ss_pred CCcHHHHhcCCCcceEEecC
Q 024480 238 PGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 238 ~~~i~~~l~g~~~GT~I~~~ 257 (267)
+. .||+|..+
T Consensus 234 ~~----------~GT~I~~~ 243 (392)
T PRK08841 234 VG----------EGTLIKGE 243 (392)
T ss_pred CC----------CCeEEEec
Confidence 52 59999654
|
|
| >KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=244.96 Aligned_cols=239 Identities=21% Similarity=0.287 Sum_probs=188.3
Q ss_pred ccCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCC----------
Q 024480 18 KPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD---------- 87 (267)
Q Consensus 18 ~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~---------- 87 (267)
+...+.+++|||+|.+++++++++.+-...+..+++++.+|++.|+++++|++ |+++-+.++++...+.
T Consensus 4 ~~~kka~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSS-GaVA~G~qrLr~~~~~s~s~r~~l~~ 82 (285)
T KOG1154|consen 4 AFLKKAYRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSS-GAVAFGRQRLRQELLPSSSMRQTLKP 82 (285)
T ss_pred hhhccceEEEEEecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEec-chhhhhHHHhhhhhccchhHHHhhCC
Confidence 45667889999999999999987778888999999999999999999999984 5655555555421111
Q ss_pred CChHHHHHHHHHHHHHHH---HHHHHHHcCCCeeEeeccccccccch--HH--HHHHHHHhhCCCEEEEeCCC-----CC
Q 024480 88 RSSADYIGMLATVMNAIF---LQATMESIGIPTRVQTAFRMSEVAEP--YI--RRRAVRHLEKGRVVIFAAGT-----GN 155 (267)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l---~~~~l~~~Gi~~~~~~~~~~~~~~~~--~~--~~~l~~ll~~g~iPIi~g~~-----g~ 155 (267)
..+....+++++..+..| +...|.++|+... |.+++..||.+. +. ...+.++|..|.|||+|.++ +.
T Consensus 83 ~~~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~iA-QvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~ 161 (285)
T KOG1154|consen 83 QSELAEKRACAAVGQSGLMALYETLFTQYGITIA-QVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREI 161 (285)
T ss_pred ccchhhHHHHHHhCcchHHHHHHHHHHHhccchh-eeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccCCccc
Confidence 112344556666655544 4566999999865 777888777643 22 23356899999999999863 35
Q ss_pred CCCC---cHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHh---------hcCCCcc--hHHHHH
Q 024480 156 PFFT---TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT---------SKDLSVM--DMTAIT 221 (267)
Q Consensus 156 ~~~~---sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~---------~lg~g~m--k~~aa~ 221 (267)
+|.| ||++||.+|.+++||.|+++|||||+|+.+|... ..++|++.+..+-. +.|+|+| |+.||.
T Consensus 162 ~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~-~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~ 240 (285)
T KOG1154|consen 162 PFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDAD-PSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAV 240 (285)
T ss_pred ccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCC-cceeeeeeccCCCCCccccCccCccCcCcchhhHHHHH
Confidence 6666 9999999999999999999999999999666544 46888888765433 2478999 999999
Q ss_pred HHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCCC
Q 024480 222 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 259 (267)
Q Consensus 222 ~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~~ 259 (267)
.|...|++++|+||..|+.|.+++.|..+||.|.....
T Consensus 241 ~A~~~Gv~viI~~g~~p~~I~~iv~g~kvgt~f~~~~~ 278 (285)
T KOG1154|consen 241 NALNAGVSVIITNGDAPENITDIVEGKKVGTFFEQLKR 278 (285)
T ss_pred HHhcCCceEEEeCCCChHHHHHHHhhhhhhhhhhhccc
Confidence 99999999999999999999999999999999976543
|
|
| >TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=265.06 Aligned_cols=216 Identities=20% Similarity=0.264 Sum_probs=175.7
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCc-hHHhhhHHhcCCCC----CCChHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG-NIFRGASAAGNSGL----DRSSADYIGMLAT 99 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG-~~~~~~~~~~~~~l----~~~~~~~~~~~~~ 99 (267)
++|+||||+++. +.+.+++++++|+++++.|+++|+||||| .+++.+..+...++ +....+.+..+++
T Consensus 2 ~iViK~GGs~~~-------~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~Ge 74 (401)
T TIGR00656 2 LIVQKFGGTSVG-------SGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHGE 74 (401)
T ss_pred cEEEEECCcCcC-------CHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHHH
Confidence 589999999998 56789999999999998999999999995 45555544432222 2334566777888
Q ss_pred HHHHHHHHHHHHHcCCCeeEeeccccccc-----cc-----hHHHHHHHHHhhCCCEEEEeCCCC-----C----CCCCc
Q 024480 100 VMNAIFLQATMESIGIPTRVQTAFRMSEV-----AE-----PYIRRRAVRHLEKGRVVIFAAGTG-----N----PFFTT 160 (267)
Q Consensus 100 ~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-----~~-----~~~~~~l~~ll~~g~iPIi~g~~g-----~----~~~~s 160 (267)
+++..++.++|+++|+++..+++.+...+ .. ....+.+.++++.|.|||++||.+ . .+++|
T Consensus 75 ~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~s 154 (401)
T TIGR00656 75 RLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGS 154 (401)
T ss_pred HHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcH
Confidence 88888899999999999998775543211 10 011144668899999999999632 1 24689
Q ss_pred HHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCC
Q 024480 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQ 237 (267)
Q Consensus 161 D~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~ 237 (267)
|++|+.+|.+|+|++|++||||||||++||+.+|+++++++++++|+.++ |...+|++|+.+|.++++|++|.|+++
T Consensus 155 D~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~ 234 (401)
T TIGR00656 155 DYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFD 234 (401)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCC
Confidence 99999999999999999999999999999999999999999999999875 788889999999999999999999998
Q ss_pred CCcHHHHhcCCCcceEEecC
Q 024480 238 PGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 238 ~~~i~~~l~g~~~GT~I~~~ 257 (267)
|+ .||+|...
T Consensus 235 ~~----------~gT~I~~~ 244 (401)
T TIGR00656 235 PE----------EGTLITNS 244 (401)
T ss_pred CC----------CCeEEEeC
Confidence 85 49999764
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. |
| >cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=251.16 Aligned_cols=214 Identities=27% Similarity=0.363 Sum_probs=169.7
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcC--------------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGN-------------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~-------------------- 83 (267)
++|.||||+++. +.+.++++++.|.+. ..++++|+|+|+ |.+.+.+..+..
T Consensus 1 ~~V~KFGGtSv~-------~~~~~~~v~~iI~~~-~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~~~~~~~~l~~i~~~ 72 (298)
T cd04244 1 RLVMKFGGTSVG-------SAERIRHVADLVGTY-AEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIAGVKDFIEILRLR 72 (298)
T ss_pred CEEEEECcccCC-------CHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 479999999998 678999999999876 457789999888 433322211100
Q ss_pred --------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecccc
Q 024480 84 --------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 125 (267)
Q Consensus 84 --------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~ 125 (267)
..+++...|.+..+++++++.++..+|+++|+++.++++.+.
T Consensus 73 h~~~~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~ 152 (298)
T cd04244 73 HIKAAKEAISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEA 152 (298)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHc
Confidence 011223345555678899999999999999999999887654
Q ss_pred cc-----ccc--------hHHHHHHHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 024480 126 SE-----VAE--------PYIRRRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVD 183 (267)
Q Consensus 126 ~~-----~~~--------~~~~~~l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVd 183 (267)
.. +.+ .+++..+..+++.+.|||++||.+ ..+++||++|+.+|.+|+|++|++|||||
T Consensus 153 ~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~ 232 (298)
T cd04244 153 GIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVD 232 (298)
T ss_pred ceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCC
Confidence 31 111 123334556778899999999732 13679999999999999999999999999
Q ss_pred ccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 184 GVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 184 GVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|||+.||+.+|+++++++++|+|+.++ |.+.+|++|+.+|.++|||++|.|+++|+ ..||+|+
T Consensus 233 Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p~---------~~GT~I~ 298 (298)
T cd04244 233 GVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPE---------APGTLIT 298 (298)
T ss_pred CCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEeeCCCCC---------CCCCEeC
Confidence 999999999999999999999999876 78888999999999999999999999987 6799984
|
The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. |
| >cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=242.65 Aligned_cols=214 Identities=25% Similarity=0.335 Sum_probs=163.1
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHH-----hhhHHhcC-CCCC--CChHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIF-----RGASAAGN-SGLD--RSSADYIG 95 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~-----~~~~~~~~-~~l~--~~~~~~~~ 95 (267)
.+|||||||+++ +.+.+++++++|+++.+.|+++||||+| |..+ +.+..... .+.+ ....+.+.
T Consensus 1 ~~ViK~GGs~l~-------~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~~~~~t~~~~~~~~ 73 (244)
T cd04260 1 IIVQKFGGTSVS-------TKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLM 73 (244)
T ss_pred CEEEEECchhcC-------CHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 379999999998 4568899999999999998876666632 3321 12222111 1222 22344555
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeeEeeccccc-----ccc--c-hHHH-HHHHHHhhCCCEEEEeCC---CCC------CC
Q 024480 96 MLATVMNAIFLQATMESIGIPTRVQTAFRMS-----EVA--E-PYIR-RRAVRHLEKGRVVIFAAG---TGN------PF 157 (267)
Q Consensus 96 ~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-----~~~--~-~~~~-~~l~~ll~~g~iPIi~g~---~g~------~~ 157 (267)
+.+++.+..++.++|+++|+++..+++.+.. .+. + .+++ +.+.++++.|+|||++|+ ++. .+
T Consensus 74 ~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~l~r 153 (244)
T cd04260 74 SCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGR 153 (244)
T ss_pred HHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEEeCC
Confidence 5667777767889999999999987755432 111 1 1122 335678999999999996 222 23
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEc
Q 024480 158 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFN 234 (267)
Q Consensus 158 ~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~n 234 (267)
+++|++|+.+|.+|+|++|+|||||||||++||+.+|++++|++|+++|+.++ |...+|++|++++.+++++++|.|
T Consensus 154 g~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~ 233 (244)
T cd04260 154 GGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRS 233 (244)
T ss_pred CchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEec
Confidence 48999999999999999999999999999999999999999999999998875 677889999999999999999999
Q ss_pred CCCCCcHHHHhcCCCcceEEe
Q 024480 235 LNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 235 g~~~~~i~~~l~g~~~GT~I~ 255 (267)
+++|. .||+|+
T Consensus 234 ~~~~~----------~gt~i~ 244 (244)
T cd04260 234 TMSEN----------PGTLIT 244 (244)
T ss_pred CCCCC----------CCCEeC
Confidence 98764 499884
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet |
| >PRK08210 aspartate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=258.83 Aligned_cols=218 Identities=23% Similarity=0.306 Sum_probs=170.0
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHh-----hhHHhcC---CCCCCChHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFR-----GASAAGN---SGLDRSSADY 93 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~-----~~~~~~~---~~l~~~~~~~ 93 (267)
|+++|||||||++++ .+.+.+++++|+.+.++|+++||||+| |++++ .+..... ...+....+.
T Consensus 1 m~~iViK~GGs~l~~-------~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~~~~~~~~~~~ 73 (403)
T PRK08210 1 MKIIVQKFGGTSVST-------EERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSEISKREQDL 73 (403)
T ss_pred CCeEEEeECCcccCC-------HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhccCCChHHHHH
Confidence 478999999999984 457889999999999999998877754 44321 2211110 1123334566
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccc-----cc---hHHH-HHHHHHhhCCCEEEEeCCCC-----C----
Q 024480 94 IGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AE---PYIR-RRAVRHLEKGRVVIFAAGTG-----N---- 155 (267)
Q Consensus 94 ~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-----~~---~~~~-~~l~~ll~~g~iPIi~g~~g-----~---- 155 (267)
+..+++..+..++.++|.++|+++.++++.+...+ .. ...+ +.+.++++.+.|||++|+.+ .
T Consensus 74 l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l 153 (403)
T PRK08210 74 LMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTL 153 (403)
T ss_pred HHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEe
Confidence 66678888888888999999999998876543211 11 1122 33557889999999999732 1
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEE
Q 024480 156 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVV 232 (267)
Q Consensus 156 ~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I 232 (267)
.++++|++|+.+|.+|+|++|+|||||||||++||+.+|++++|++++++|+.++ |...+|++|+++|.++++|++|
T Consensus 154 ~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i 233 (403)
T PRK08210 154 GRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRI 233 (403)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEE
Confidence 2358999999999999999999999999999999999999999999999998875 7888999999999999999999
Q ss_pred EcCCCCCcHHHHhcCCCcceEEecC
Q 024480 233 FNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 233 ~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
.|++++. .||+|...
T Consensus 234 ~~~~~~~----------~gT~I~~~ 248 (403)
T PRK08210 234 RSTYSDS----------PGTLITSL 248 (403)
T ss_pred EecCCCc----------CCcEEEec
Confidence 9998643 49999764
|
|
| >PLN02512 acetylglutamate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=247.80 Aligned_cols=233 Identities=19% Similarity=0.276 Sum_probs=175.7
Q ss_pred CCCCCc--cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHH-hcC-----C
Q 024480 13 DNGMSK--PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA-AGN-----S 84 (267)
Q Consensus 13 ~~~~~~--~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~-~~~-----~ 84 (267)
+|+... +.++.+++||||||++++++ +....++++|+.+++.|.++|||||||++.+.+.. .+. .
T Consensus 35 ~r~~~pyi~~~~~~tiVIKlGGs~i~d~-------~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~~ 107 (309)
T PLN02512 35 LSEALPFIQRFRGKTVVVKYGGAAMKDP-------ELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKN 107 (309)
T ss_pred HHHHhHHHHHHCCCeEEEEECCeeccCh-------hHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCCC
Confidence 444443 45778999999999999854 35567889999888899999999999998766432 221 2
Q ss_pred CCCCChHHH---HHH-HHHHHHHHHHHHHHHHcCCCeeEeeccccc-----------ccc---ch-HHH-HHHHHHhhCC
Q 024480 85 GLDRSSADY---IGM-LATVMNAIFLQATMESIGIPTRVQTAFRMS-----------EVA---EP-YIR-RRAVRHLEKG 144 (267)
Q Consensus 85 ~l~~~~~~~---~~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-----------~~~---~~-~~~-~~l~~ll~~g 144 (267)
|++...... +.+ ++..+|..++ +.|.++|+++.++++.+.. ++. +. .++ +.+..+|+.|
T Consensus 108 G~rvT~~~~lei~~~~l~g~ln~~lv-~~L~~~Gv~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~~~i~~lL~~g 186 (309)
T PLN02512 108 GLRVTDAETMEVVEMVLVGKVNKSLV-SLINKAGGTAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVLRPLVDDG 186 (309)
T ss_pred CCcCCCHHHHHHHHHHHhhHHHHHHH-HHHHHcCCCeEEeehhhCCEEEEEEcCcCccccccceeeecCHHHHHHHHhCC
Confidence 232222222 222 3446787655 7899999999988766531 111 00 123 3356789999
Q ss_pred CEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCc
Q 024480 145 RVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSV 214 (267)
Q Consensus 145 ~iPIi~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~ 214 (267)
.|||++|+ .+. ..+++|.+|+++|.+|+|++|+|+|||||||+++| +++++|++|+++|+.++ .+|+
T Consensus 187 ~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGG 263 (309)
T PLN02512 187 HIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGG 263 (309)
T ss_pred CEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCc
Confidence 99999996 122 34699999999999999999999999999998764 34789999999887764 3788
Q ss_pred c--hHHHHHHHHhCCCc-EEEEcCCCCCcHH-HHhcCCCcceEEec
Q 024480 215 M--DMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGG 256 (267)
Q Consensus 215 m--k~~aa~~a~~~Gi~-v~I~ng~~~~~i~-~~l~g~~~GT~I~~ 256 (267)
| |++++..+.+.|++ ++|+||+.|+.+. +++.++..||+|.+
T Consensus 264 M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~ 309 (309)
T PLN02512 264 MIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMITG 309 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEeC
Confidence 8 99999999999995 9999999998875 78888889999964
|
|
| >TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=271.78 Aligned_cols=232 Identities=19% Similarity=0.278 Sum_probs=178.5
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCC---------CCChHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL---------DRSSAD 92 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l---------~~~~~~ 92 (267)
+.+++|||+|||+|++++ +.++.+.+.+++++|++|++.|+++|||++ |+.+.++..++.+++ .+....
T Consensus 6 ~~~~iViKiGss~lt~~~-~~~~~~~l~~l~~~i~~l~~~g~~vilVsS-GA~a~G~~~~~~~~~~~~~~~~~~~~~~~~ 83 (715)
T TIGR01092 6 DVKRIVVKVGTAVVTRGD-GRLALGRLGSICEQLSELNSDGREVILVTS-GAVAFGRQRLRHRILVNSSFADLQKPQPEL 83 (715)
T ss_pred cCCEEEEEeCcceeECCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEcc-chHHhchHHhccchhccccccccCCCCchH
Confidence 468999999999999875 478999999999999999999999999653 333334443432221 112223
Q ss_pred HHHHHHHHHHHHH---HHHHHHHcCCCeeEeeccccccccch--HH--HHHHHHHhhCCCEEEEeCCC-----CC-----
Q 024480 93 YIGMLATVMNAIF---LQATMESIGIPTRVQTAFRMSEVAEP--YI--RRRAVRHLEKGRVVIFAAGT-----GN----- 155 (267)
Q Consensus 93 ~~~~~~~~~~~~l---~~~~l~~~Gi~~~~~~~~~~~~~~~~--~~--~~~l~~ll~~g~iPIi~g~~-----g~----- 155 (267)
..+++++..+..| +++.|.++++.+. |.+++..++... +. ...+..+|+.|.|||+++++ +.
T Consensus 84 ~~qa~aa~gq~~L~~~y~~~f~~~~i~~a-Q~Llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~ 162 (715)
T TIGR01092 84 DGKACAAVGQSGLMALYETMFTQLDITAA-QILVTDLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDS 162 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeE-EEEechhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCcccccccccccc
Confidence 3455555555444 4567899999875 666776666533 22 23356789999999999731 11
Q ss_pred --CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHh-h--------cCCCcc--hHHHHHH
Q 024480 156 --PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT-S--------KDLSVM--DMTAITL 222 (267)
Q Consensus 156 --~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~-~--------lg~g~m--k~~aa~~ 222 (267)
.++|||++|+++|.+++||+|+|+|||||||++||+ +|++++|++++..+.. + .++|+| |++|+..
T Consensus 163 ~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~ 241 (715)
T TIGR01092 163 QGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVW 241 (715)
T ss_pred cceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHH
Confidence 168999999999999999999999999999999996 6899999998764322 1 247888 8999999
Q ss_pred HHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 223 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 223 a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
+.++|++++|+|+++++.|.++++|+..||+|.+.
T Consensus 242 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~ 276 (715)
T TIGR01092 242 AAYGGTPVIIASGTAPKNITKVVEGKKVGTLFHED 276 (715)
T ss_pred HHHCCCeEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence 99999999999999999999999999899999753
|
This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region. |
| >PRK06635 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=257.92 Aligned_cols=218 Identities=26% Similarity=0.356 Sum_probs=171.8
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhH-HhcC-CCC-CCChHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGAS-AAGN-SGL-DRSSADYIGMLA 98 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~-~~~~-~~l-~~~~~~~~~~~~ 98 (267)
|+++|+||||+++. +.+.+++++++|+++.+.|+++|+|||| |.+.+.+. .++. .+. +....+.+.+.+
T Consensus 1 m~~iViK~GGs~l~-------~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~G 73 (404)
T PRK06635 1 MALIVQKFGGTSVG-------DVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTG 73 (404)
T ss_pred CCeEEEeECCcccC-------CHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhh
Confidence 46899999999997 5678999999999999889999998886 55554432 2221 111 223345555567
Q ss_pred HHHHHHHHHHHHHHcCCCeeEeecccccccc-----ch---HHH-HHHHHHhhCCCEEEEeCCCC---------CCCCCc
Q 024480 99 TVMNAIFLQATMESIGIPTRVQTAFRMSEVA-----EP---YIR-RRAVRHLEKGRVVIFAAGTG---------NPFFTT 160 (267)
Q Consensus 99 ~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-----~~---~~~-~~l~~ll~~g~iPIi~g~~g---------~~~~~s 160 (267)
+.++..++.++|+++|+++.++++.+...+. .. ..+ +.+.++++.|.|||++||.+ ..+++|
T Consensus 74 e~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~s 153 (404)
T PRK06635 74 EQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGS 153 (404)
T ss_pred HHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCCh
Confidence 7888888889999999999887765542111 10 112 34567899999999999732 134699
Q ss_pred HHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCC
Q 024480 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQ 237 (267)
Q Consensus 161 D~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~ 237 (267)
|++|+++|.+|+|++|++||||||||++||+.+|+++++++++++|+.++ |...+|++|+.++.++|++++|.|+++
T Consensus 154 D~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~ 233 (404)
T PRK06635 154 DTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFS 233 (404)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCC
Confidence 99999999999999999999999999999999999999999999998875 677789999999999999999999885
Q ss_pred CCcHHHHhcCCCcceEEecC
Q 024480 238 PGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 238 ~~~i~~~l~g~~~GT~I~~~ 257 (267)
+. .||+|...
T Consensus 234 ~~----------~gT~i~~~ 243 (404)
T PRK06635 234 DN----------PGTLITGE 243 (404)
T ss_pred CC----------CCCEEeeC
Confidence 52 59999764
|
|
| >PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=244.29 Aligned_cols=215 Identities=21% Similarity=0.277 Sum_probs=166.7
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhH-HhcC-----C---C--CCCCh---
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-----S---G--LDRSS--- 90 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~-~~~~-----~---~--l~~~~--- 90 (267)
|+||||||+++.++ .+++++|+.+.+.|.++|||||||++.+.+. +.+. . | ++.+.
T Consensus 1 ~~ViK~GG~~l~~~----------~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~ 70 (268)
T PRK14058 1 MIVVKIGGSVGIDP----------EDALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRET 70 (268)
T ss_pred CEEEEEChHHhhCc----------HHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHH
Confidence 68999999999753 2568999999999999999999999876643 2221 0 2 22222
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHcCCCeeEeeccccccc-------------------cchH------HH-HHHHHHhhC
Q 024480 91 ADYIG-MLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-------------------AEPY------IR-RRAVRHLEK 143 (267)
Q Consensus 91 ~~~~~-~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-------------------~~~~------~~-~~l~~ll~~ 143 (267)
.+.+. .++ .+|..++ ++|.++|+++.++++.+...+ +..| ++ +.+..++++
T Consensus 71 l~~~~~a~~-~ln~~lv-~~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~ 148 (268)
T PRK14058 71 LEVFIMAMA-LINKQLV-ERLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKA 148 (268)
T ss_pred HHHHHHHHH-HHHHHHH-HHHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHC
Confidence 23333 344 7888776 589999999988776553211 0011 22 345688999
Q ss_pred CCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcc
Q 024480 144 GRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVM 215 (267)
Q Consensus 144 g~iPIi~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~m 215 (267)
|+|||++|+ .|. .++++|.+|+++|.+|+|++|+|+|||||||++||. ++++|++++++|+.++ .+|+|
T Consensus 149 g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM 225 (268)
T PRK14058 149 GYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGM 225 (268)
T ss_pred CCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCcc
Confidence 999999985 222 358999999999999999999999999999999883 4689999999887765 57888
Q ss_pred --hHHHHHHHHhCCC-cEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 216 --DMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 216 --k~~aa~~a~~~Gi-~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|++++..+.++|+ +++|+|+++|+++.++++|+ ||+|.+
T Consensus 226 ~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~--GT~I~~ 267 (268)
T PRK14058 226 KKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGE--GTVIVN 267 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCC--ceEEec
Confidence 9999999999999 69999999999999999875 999964
|
|
| >PRK07431 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=266.56 Aligned_cols=218 Identities=24% Similarity=0.331 Sum_probs=173.7
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcCCCCCC----ChHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGNSGLDR----SSADYIGML 97 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~~~l~~----~~~~~~~~~ 97 (267)
|+++|+||||+++. +.+.+++++++|+++.+.|+++|||||| |.+.+.+..+.. ++.. ...+.+...
T Consensus 1 m~~iViKfGGss~~-------~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~-~~t~~~~~~~~~~~ls~ 72 (587)
T PRK07431 1 MALIVQKFGGTSVG-------SVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAK-EISSNPPRREMDMLLST 72 (587)
T ss_pred CCeEEEEECchhcC-------CHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHH-HhccCCCHHHHHHHHHH
Confidence 46899999999997 6789999999999999999999999996 666655544321 1211 123444445
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEeeccccccccch--------HHH-HHHHHHhhCCCEEEEeCCCCC-----------CC
Q 024480 98 ATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--------YIR-RRAVRHLEKGRVVIFAAGTGN-----------PF 157 (267)
Q Consensus 98 ~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~--------~~~-~~l~~ll~~g~iPIi~g~~g~-----------~~ 157 (267)
++.++..+++.+|.++|+++.++++.+...+... .++ +.+.++++.|.|||++|+.|. .+
T Consensus 73 Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgr 152 (587)
T PRK07431 73 GEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGR 152 (587)
T ss_pred hHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCC
Confidence 6778888888899999999998876654222110 112 346678999999999986331 24
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEc
Q 024480 158 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFN 234 (267)
Q Consensus 158 ~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~n 234 (267)
+++|++|+++|.+|+|++|++||||||||++||+.+|++++|++++++|+.++ |.++||++|++++.++|+|++|.|
T Consensus 153 ggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~ 232 (587)
T PRK07431 153 GGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRS 232 (587)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEec
Confidence 67999999999999999999999999999999999999999999999998875 888999999999999999999999
Q ss_pred CCCCCcHHHHhcCCCcceEEecCC
Q 024480 235 LNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 235 g~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
++. + ..||+|.+..
T Consensus 233 ~~~-~---------~~GT~i~~~~ 246 (587)
T PRK07431 233 SWS-D---------APGTLVTSPP 246 (587)
T ss_pred CCC-C---------CCCeEEEeCC
Confidence 872 2 3599998653
|
|
| >CHL00202 argB acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=241.55 Aligned_cols=226 Identities=16% Similarity=0.228 Sum_probs=172.5
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhH-HhcC-----CCCCCChHH
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-----SGLDRSSAD 92 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~-~~~~-----~~l~~~~~~ 92 (267)
+.++.+++|||+||+++.++ .....++++|+.|+..|.++|||||||++.+... +.+. .|++.+..+
T Consensus 19 ~~~~~~~~VIk~gG~~~~~~-------~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~rvT~~~ 91 (284)
T CHL00202 19 QKFRGRIMVIKYGGAAMKNL-------ILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKV 91 (284)
T ss_pred HHHcCCeEEEEEChHHhcCc-------chHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeECCcccCCHH
Confidence 45677999999999998642 3456899999999999999999999999876543 2221 344333333
Q ss_pred H---HHH-HHHHHHHHHHHHHHHHcCCCeeEeeccccccc--------cch------HHH-HHHHHHhhCCCEEEEeCC-
Q 024480 93 Y---IGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEV--------AEP------YIR-RRAVRHLEKGRVVIFAAG- 152 (267)
Q Consensus 93 ~---~~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~--------~~~------~~~-~~l~~ll~~g~iPIi~g~- 152 (267)
. +.+ ++..+|..++ ++|.++|+++.++++.+...+ ... .++ +.+..+|++|+|||+++.
T Consensus 92 ~l~~~~~~l~g~ln~~lv-~~L~~~Gv~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~ 170 (284)
T CHL00202 92 TMEIVEMVLAGKVNKDLV-GSINANGGKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVA 170 (284)
T ss_pred HHHHHHHHHhhHHHHHHH-HHHHhCCCCeeeeeeccCCEEEEEeCCCcccccceeEEecCHHHHHHHHHCCCEEEECCCc
Confidence 2 222 4456787765 688999999998877653211 001 123 335678999999999984
Q ss_pred ---CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHHH
Q 024480 153 ---TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAIT 221 (267)
Q Consensus 153 ---~g~~-~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa~ 221 (267)
.|.. ++|+|++|+.+|.+|+|++|+|+|||||||+++ .+| .++|++++++|+.++ .+|+| |+++|.
T Consensus 171 ~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~--~d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~ 247 (284)
T CHL00202 171 ADHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADI--NDP-NSLISTLNIKEARNLASTGIISGGMIPKVNCCI 247 (284)
T ss_pred cCCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCC--CCC-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 2333 479999999999999999999999999999853 123 379999999887764 36888 899999
Q ss_pred HHHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEEe
Q 024480 222 LCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIG 255 (267)
Q Consensus 222 ~a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I~ 255 (267)
.+.++|++ ++|+||+.|+.+ .++|++++.||+|.
T Consensus 248 ~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 248 RALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred HHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 99999996 899999999974 78999999999985
|
|
| >PRK00942 acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=243.36 Aligned_cols=225 Identities=23% Similarity=0.307 Sum_probs=172.4
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHH-hcC-----CCCCCChH-
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA-AGN-----SGLDRSSA- 91 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~-~~~-----~~l~~~~~- 91 (267)
++++++++||||||++++++ +.+..++++|+.+++.|.++|||||+|++.+.+.. .+. .+++....
T Consensus 19 ~~~~~~~iViK~GGs~l~~~-------~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g~~~t~~~ 91 (283)
T PRK00942 19 QRFMGKTIVIKYGGNAMTDE-------ELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDAE 91 (283)
T ss_pred HHHcCCeEEEEEChHHhcCc-------chHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCCEecCCHH
Confidence 45678899999999999864 35678999999999999999999999998766443 321 12222222
Q ss_pred --HHHHH-HHHHHHHHHHHHHHHHcCCCeeEeecccccccc--------------c-hHHH-HHHHHHhhCCCEEEEeCC
Q 024480 92 --DYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA--------------E-PYIR-RRAVRHLEKGRVVIFAAG 152 (267)
Q Consensus 92 --~~~~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~--------------~-~~~~-~~l~~ll~~g~iPIi~g~ 152 (267)
+...+ ++..+|..++ ++|.++|+++..+++.+...+. . ..++ +.+..+|++|.|||+++.
T Consensus 92 ~l~~~~~a~~G~l~~~i~-~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~ 170 (283)
T PRK00942 92 TMEVVEMVLAGKVNKELV-SLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPI 170 (283)
T ss_pred HHHHHHHHHcCchHHHHH-HHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcCc
Confidence 22222 2235777655 7899999998877765432110 0 0123 335688999999999974
Q ss_pred ----CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHH
Q 024480 153 ----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAI 220 (267)
Q Consensus 153 ----~g-~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa 220 (267)
.| ..++++|.+|+++|.+|+|++|+|+|||||||++ ++++|++|+++|+.++ .+|+| |+++|
T Consensus 171 ~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a 244 (283)
T PRK00942 171 GVGEDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAA 244 (283)
T ss_pred EECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHH
Confidence 22 2358999999999999999999999999999986 3789999999987764 36788 89999
Q ss_pred HHHHhCCC-cEEEEcCCCCCc-HHHHhcCCCcceEEecC
Q 024480 221 TLCQENNI-PVVVFNLNQPGN-IAKAIQGERVGTLIGGT 257 (267)
Q Consensus 221 ~~a~~~Gi-~v~I~ng~~~~~-i~~~l~g~~~GT~I~~~ 257 (267)
..+.++|+ +++|+|++.|++ +.++++|+.+||+|.+.
T Consensus 245 ~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 283 (283)
T PRK00942 245 LDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVPD 283 (283)
T ss_pred HHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEecC
Confidence 99999998 599999999999 78999999999999763
|
|
| >COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=234.83 Aligned_cols=222 Identities=24% Similarity=0.343 Sum_probs=175.2
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHh-hhHHhcC-----CCCCCChH---H
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR-GASAAGN-----SGLDRSSA---D 92 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~-~~~~~~~-----~~l~~~~~---~ 92 (267)
++|++|||+||+++.+ .+.+++++++|+.|+..|.+.|||||||++-. .+.+.+. .|++.+.. +
T Consensus 1 ~~k~~VIK~GG~~~~~-------~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tle 73 (265)
T COG0548 1 RGKTIVIKLGGSAMED-------ENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLE 73 (265)
T ss_pred CCceEEEEECceeecC-------chHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHH
Confidence 3689999999999984 35689999999999999999999999998654 3444442 45554443 3
Q ss_pred HHHH-HHHHHHHHHHHHHHHHcCCCeeEeecccccccc-----------chH------HHHH-HHHHhhCCCEEEEeCC-
Q 024480 93 YIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-----------EPY------IRRR-AVRHLEKGRVVIFAAG- 152 (267)
Q Consensus 93 ~~~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-----------~~~------~~~~-l~~ll~~g~iPIi~g~- 152 (267)
...+ ++...|..++ +.|+.+|.+++.+++.+..-+. -.| +|.. +..++++++|||+++.
T Consensus 74 vv~mvl~G~vNk~iv-a~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia 152 (265)
T COG0548 74 VVEMVLGGTVNKEIV-ARLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIA 152 (265)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecce
Confidence 3333 5556788766 6888899988888776632110 111 3454 4578999999999984
Q ss_pred ---CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---C--CCcc--hHHHHH
Q 024480 153 ---TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D--LSVM--DMTAIT 221 (267)
Q Consensus 153 ---~g~~-~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g--~g~m--k~~aa~ 221 (267)
+|.. ++++|++|+.+|.+|+|++|+++|||+|||+++|. | +++++++.+|+.++ + +++| |+++|.
T Consensus 153 ~~~~G~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~ 228 (265)
T COG0548 153 VDEDGETLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIPKVEAAL 228 (265)
T ss_pred ECCCCcEEeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHHHHHHHH
Confidence 4444 48999999999999999999999999999998753 2 69999999988875 3 5788 899999
Q ss_pred HHHhCCCc-EEEEcCCCCCcHH-HHhcCCCcceEEe
Q 024480 222 LCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIG 255 (267)
Q Consensus 222 ~a~~~Gi~-v~I~ng~~~~~i~-~~l~g~~~GT~I~ 255 (267)
.|+++|++ ++|+||+.++.+. ++|++++.||.|.
T Consensus 229 ~A~~~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~ 264 (265)
T COG0548 229 EALESGVRRVHIISGRVPHSLLLELFTRDGIGTMIV 264 (265)
T ss_pred HHHHhCCCeEEEecCCCcchHHHHHhcCCCcceEec
Confidence 99999995 9999999999966 6899999999986
|
|
| >PRK12353 putative amino acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=243.73 Aligned_cols=228 Identities=21% Similarity=0.266 Sum_probs=163.9
Q ss_pred ccceEEEEeccccccCCCC-CCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchH-HhhhHHhcC---CC--CCCChHHH-
Q 024480 22 KWQRVLLKVSGEALAGDHT-QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNI-FRGASAAGN---SG--LDRSSADY- 93 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~-~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~-~~~~~~~~~---~~--l~~~~~~~- 93 (267)
.++++||||||++|++++. .+++.+.+.+++++|+.+++.|+++|||||||++ ++.+..... ++ ++..+.+.
T Consensus 1 ~~~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (314)
T PRK12353 1 MMKKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKNKVPAMPLDVC 80 (314)
T ss_pred CCcEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCCCCCCchhHHH
Confidence 3789999999999998764 5689999999999999999999999999999876 433222111 11 11111221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHcCCCee-----Eeecccccccc---------------------------------ch
Q 024480 94 ----IGMLATVMNAIFLQATMESIGIPTR-----VQTAFRMSEVA---------------------------------EP 131 (267)
Q Consensus 94 ----~~~~~~~~~~~l~~~~l~~~Gi~~~-----~~~~~~~~~~~---------------------------------~~ 131 (267)
.++++..++. .+.+.|..+|+... .+.+++.++.. +.
T Consensus 81 ~a~~qg~l~~~l~~-~~~~~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (314)
T PRK12353 81 GAMSQGYIGYHLQN-ALRNELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGRG 159 (314)
T ss_pred HHHHhHHHHHHHHH-HHHHHHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCce
Confidence 1223333343 34567888877322 12222222200 01
Q ss_pred H------------HHHH-HHHHhhCCCEEEEeCCCCC-------------CCCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 024480 132 Y------------IRRR-AVRHLEKGRVVIFAAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGV 185 (267)
Q Consensus 132 ~------------~~~~-l~~ll~~g~iPIi~g~~g~-------------~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGV 185 (267)
+ ++.+ +..+|+.|+|||++|+.+. .++|+|.+|+++|.+|+||+|+|+||||||
T Consensus 160 ~r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGV 239 (314)
T PRK12353 160 YRRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKV 239 (314)
T ss_pred eEeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccc
Confidence 1 2233 4568999999999975321 147889999999999999999999999999
Q ss_pred ccCCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHH--hCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 186 YDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 186 y~~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~--~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|+++| +|++++|+++++.|+.++ ++|+| |+++|..+. +.|++++|+| ++.+.++++|+ .||+|.
T Consensus 240 y~~~~--~~~a~~i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~GT~i~ 313 (314)
T PRK12353 240 YINFG--KPNQKKLDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-AGTVIV 313 (314)
T ss_pred cCCCC--CCCCeECcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-CCeEec
Confidence 99766 488999999999876643 46788 889998877 6788999997 78888999998 899996
Q ss_pred c
Q 024480 256 G 256 (267)
Q Consensus 256 ~ 256 (267)
+
T Consensus 314 ~ 314 (314)
T PRK12353 314 K 314 (314)
T ss_pred C
Confidence 4
|
|
| >PLN02418 delta-1-pyrroline-5-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=267.49 Aligned_cols=232 Identities=22% Similarity=0.310 Sum_probs=179.0
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCC--------C--CCCh
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSG--------L--DRSS 90 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~--------l--~~~~ 90 (267)
.+++++|+||||++|++.+ +.++.+.+.+++++|+++++.|+++|||+| |+.+.+...++... + +...
T Consensus 13 ~~~~~iViK~G~ssl~~~~-~~~~~~~i~~l~~~i~~l~~~g~~vvlVsS-ga~~~g~~~l~~~~~~~~~~~~~~~~~~~ 90 (718)
T PLN02418 13 RDVKRVVIKVGTAVVTRDD-GRLALGRLGALCEQIKELNSDGYEVILVSS-GAVGVGRQRLRYRRLVNSSFADLQKPQME 90 (718)
T ss_pred hhCCEEEEEeCCCeecCCC-CCccHHHHHHHHHHHHHHHHCCCEEEEEec-chHHHHHHHHhhhhhhhcccccCCCCcch
Confidence 3578999999999998754 368899999999999999999999999985 55444433332101 1 1223
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccch--HH--HHHHHHHhhCCCEEEEeCCCC-----C----
Q 024480 91 ADY--IGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YI--RRRAVRHLEKGRVVIFAAGTG-----N---- 155 (267)
Q Consensus 91 ~~~--~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~--~~--~~~l~~ll~~g~iPIi~g~~g-----~---- 155 (267)
.+. +.+.++.....++.++|+++|+++. +...+.+++..+ +. .+.+..+|+.|.|||+++++. .
T Consensus 91 ~~~qa~aa~Gq~~l~~~~~~~f~~~g~~~~-qillT~~~~~~~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~ 169 (718)
T PLN02418 91 LDGKACAAVGQSELMALYDTLFSQLDVTAS-QLLVTDSDFRDPDFRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYED 169 (718)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCeEE-EEEecHhHhcchhHhHhHHHHHHHHHHCCCEEEEcCCCCcccccccccc
Confidence 342 2335555666678899999999765 445665665422 22 234567899999999998521 1
Q ss_pred ---CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHh---------hcCCCcc--hHHHHH
Q 024480 156 ---PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT---------SKDLSVM--DMTAIT 221 (267)
Q Consensus 156 ---~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~---------~lg~g~m--k~~aa~ 221 (267)
.++|||++|+++|.+++|++|+|+|||||||++||+ +|++++|++++..+.. ..++|+| |++|+.
T Consensus 170 ~~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~ 248 (718)
T PLN02418 170 SSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAV 248 (718)
T ss_pred ccCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHH
Confidence 356899999999999999999999999999999997 6899999999754321 1258899 899999
Q ss_pred HHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 222 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 222 ~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
.+.++|++++|+||++|+.+.++|+|+..||+|.+
T Consensus 249 ~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 283 (718)
T PLN02418 249 NAASAGIPVVITSGYALDNIRKVLRGERVGTLFHQ 283 (718)
T ss_pred HHHHCCCcEEEeCCCCcchHHHHhcCCCCceEecc
Confidence 99999999999999999999999999999999976
|
|
| >cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=241.27 Aligned_cols=215 Identities=24% Similarity=0.255 Sum_probs=167.3
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh----c------------C----
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA----G------------N---- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~----~------------~---- 83 (267)
++|.||||+++. +.+.++++++.|.+..+++.++|+|.|+ |.+.+.+..+ . .
T Consensus 1 ~~V~KFGGtSv~-------~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~l~~i~~~~~~ 73 (295)
T cd04259 1 WVVLKFGGTSVS-------SRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLN 73 (295)
T ss_pred CEEEEeCccccC-------CHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 469999999998 6789999999888755667788888888 3222111000 0 0
Q ss_pred ------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc----ccc
Q 024480 84 ------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVA 129 (267)
Q Consensus 84 ------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~----~~~ 129 (267)
..++++..|.+..+++++++.+++.+|++.|+++.++++++.. ++.
T Consensus 74 ~~~~L~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~ 153 (295)
T cd04259 74 LAEQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLG 153 (295)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeeccccc
Confidence 0122334566667899999999999999999999988765531 111
Q ss_pred ---chH---------HHHHHHHHhhC-CCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 024480 130 ---EPY---------IRRRAVRHLEK-GRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 187 (267)
Q Consensus 130 ---~~~---------~~~~l~~ll~~-g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~ 187 (267)
..| ....+.+.++. +.|||++||.| ..+++||++|+.+|.+|+|+.|++||||||||+
T Consensus 154 ~~~~~~~~a~v~~~~~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt 233 (295)
T cd04259 154 GETMNYLSARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFT 233 (295)
T ss_pred ccccccccceehhhhhHHHHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 011 12334555654 67999999843 246899999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 188 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 188 ~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
+||+.+|++++|++++|+|+.++ |...+|++|+++|.++|||++|.|+++|+ ..||+|+
T Consensus 234 ~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~I~ 295 (295)
T cd04259 234 ANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPE---------LSGTLIT 295 (295)
T ss_pred CCCCCCCCCeEeceeCHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCC---------CCCcEeC
Confidence 99999999999999999998875 77788999999999999999999999987 7799984
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. |
| >cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=241.70 Aligned_cols=225 Identities=21% Similarity=0.303 Sum_probs=170.9
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhH-HhcC-----CCCCCChH-
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-----SGLDRSSA- 91 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~-~~~~-----~~l~~~~~- 91 (267)
+.++.+++||||||++++++ +.+..++++++.+++.|.++|||||||++.+.+. +.+. .|++....
T Consensus 10 ~~~~~~~~ViKlGGs~i~~~-------~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~~ 82 (279)
T cd04250 10 QKFRGKTVVIKYGGNAMKDE-------ELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEE 82 (279)
T ss_pred HHHcCCEEEEEEChHHhcCc-------cHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCHH
Confidence 34667899999999999854 3567888999988888999999999999876543 3221 12222222
Q ss_pred --HHHHH-HHHHHHHHHHHHHHHHcCCCeeEeecccccccc--------------chH------HH-HHHHHHhhCCCEE
Q 024480 92 --DYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA--------------EPY------IR-RRAVRHLEKGRVV 147 (267)
Q Consensus 92 --~~~~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~--------------~~~------~~-~~l~~ll~~g~iP 147 (267)
+...+ ++..+|..+ .+.|.++|+++.++++.+...+. ..+ ++ +.+.++|+.|.||
T Consensus 83 ~~~~~~~~~~g~ln~~l-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IP 161 (279)
T cd04250 83 TMEIVEMVLVGKVNKEI-VSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIP 161 (279)
T ss_pred HHHHHHHHHcCchHHHH-HHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeE
Confidence 22222 223677775 57899999999988765431110 011 22 3356789999999
Q ss_pred EEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--
Q 024480 148 IFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM-- 215 (267)
Q Consensus 148 Ii~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m-- 215 (267)
|+++. .+. .++|+|.+|+++|.+|+|++|+|+|||||||++||+ ++++|++++++|+.++ .+|+|
T Consensus 162 Vi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~ 238 (279)
T cd04250 162 VIAPVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIP 238 (279)
T ss_pred EEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHH
Confidence 99985 122 247999999999999999999999999999999884 3799999999887654 47888
Q ss_pred hHHHHHHHHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEE
Q 024480 216 DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLI 254 (267)
Q Consensus 216 k~~aa~~a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I 254 (267)
|+++|..+.++|++ ++|+|+++|+++ .+++++++.||.|
T Consensus 239 Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 239 KVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 89999999999986 999999999975 6899998899975
|
In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A |
| >cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=238.31 Aligned_cols=212 Identities=21% Similarity=0.235 Sum_probs=167.6
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-c-------hHHhhhHHhc----C---------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-G-------NIFRGASAAG----N--------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G-------~~~~~~~~~~----~--------- 83 (267)
|.|.||||+++. +.+.++++++.|.. ++.++++|+++ | .+.+.+..+- .
T Consensus 1 m~V~KFGGtSv~-------~~~~i~~v~~ii~~---~~~~~vvVvSA~~~~~~~~~~vTd~L~~~~~~~~~~~~~~~~~~ 70 (288)
T cd04245 1 MKVVKFGGSSLA-------SAEQFQKVKAIVKA---DPERKIVVVSAPGKRFKDDTKVTDLLILYAEAVLAGEDTESIFE 70 (288)
T ss_pred CEEEEECcCccC-------CHHHHHHHHHHHHh---cCCCEEEEEcCCCCCCCchhhHHHHHHHHHHHHhcCcchHHHHH
Confidence 359999999998 57788999888874 24678888887 4 2333321110 0
Q ss_pred ----------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecccccccc
Q 024480 84 ----------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA 129 (267)
Q Consensus 84 ----------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~ 129 (267)
...+++..|.+...++++++.+++.+|++.|+++..+++++.+.+.
T Consensus 71 ~i~~~h~~~~~~L~~~~~~~~~i~~~~~~l~~~~~~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t 150 (288)
T cd04245 71 AIVDRYAEIADELGLPMSILEEIAEILENLANLDYANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVV 150 (288)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceee
Confidence 0011223455667889999999999999999999988876653221
Q ss_pred -chH--------HHHHHHHHhhCCCEEEEeCCCCC---------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCC
Q 024480 130 -EPY--------IRRRAVRHLEKGRVVIFAAGTGN---------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR 191 (267)
Q Consensus 130 -~~~--------~~~~l~~ll~~g~iPIi~g~~g~---------~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~ 191 (267)
..+ ..+.+.+.++.+.|||++||.|. +++++|+.|+.+|.+|+|+.+.+||||||||++||+
T Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr 230 (288)
T cd04245 151 TDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPR 230 (288)
T ss_pred cCCccccccchhhHHHHHHHHhCCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCC
Confidence 111 12345677788899999998642 468999999999999999999999999999999999
Q ss_pred CCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 192 RNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 192 ~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
.+|+|+.++++||+|+.++ |...||+.|+.+|.+++||++|.|.++|+ ..||+|.
T Consensus 231 ~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~Ipi~v~n~~~p~---------~~GT~I~ 288 (288)
T cd04245 231 IVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPE---------APGTLIV 288 (288)
T ss_pred CCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCCCcEEEeeCCCCC---------CCCceeC
Confidence 9999999999999999885 88999999999999999999999999987 6799984
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. |
| >cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=238.74 Aligned_cols=214 Identities=25% Similarity=0.316 Sum_probs=165.5
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcC--------------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGN-------------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~-------------------- 83 (267)
|.|.||||+++. +.+.++++++.|.+.. ++.++|+|+++ |.+.+.+..+..
T Consensus 1 m~V~KFGGtSv~-------~~~~i~~v~~iI~~~~-~~~~~vvVvSA~~gvTd~L~~~~~~~~~~~~~~~~~l~~i~~~h 72 (294)
T cd04257 1 MKVLKFGGTSLA-------NAERIRRVADIILNAA-KQEQVAVVVSAPGKVTDLLLELAELASSGDDAYEDILQELESKH 72 (294)
T ss_pred CEEEEeCccccC-------CHHHHHHHHHHHHhhc-cCCCEEEEEcCCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 469999999998 5678999999998755 45688888887 433222111000
Q ss_pred -------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc
Q 024480 84 -------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 126 (267)
Q Consensus 84 -------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~ 126 (267)
..+++...|.+..+++++++.+++.+|++.|+++.++++.+.-
T Consensus 73 ~~~~~~l~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i 152 (294)
T cd04257 73 LDLITELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDARELI 152 (294)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHee
Confidence 0112223345556788999999999999999999988765531
Q ss_pred ----cccc-----hHHHHHHHHHhhC-CCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 024480 127 ----EVAE-----PYIRRRAVRHLEK-GRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 187 (267)
Q Consensus 127 ----~~~~-----~~~~~~l~~ll~~-g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~ 187 (267)
.... ....+.+.++++. +.|||++||.+ ..+++||++|+++|..|+|++|++||||||||+
T Consensus 153 ~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt 232 (294)
T cd04257 153 VTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYS 232 (294)
T ss_pred EecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCC
Confidence 1110 1112344555555 89999999843 246899999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 188 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 188 ~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
.||+.+|+|+++++|+|+|+.++ |+..+|++|+.+|.++|||++|.|+++|+ ..||+|.
T Consensus 233 ~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ipi~i~~~~~p~---------~~GT~I~ 294 (294)
T cd04257 233 ADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPE---------APGTLIS 294 (294)
T ss_pred CCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCCEEEeeCCCCC---------CCCCEeC
Confidence 99999999999999999998874 88889999999999999999999999987 6799984
|
These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act |
| >TIGR00657 asp_kinases aspartate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=250.33 Aligned_cols=217 Identities=24% Similarity=0.324 Sum_probs=171.0
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcC---CCC--------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGN---SGL-------------- 86 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~---~~l-------------- 86 (267)
++|+||||+++. +.+.+.++++.|....+.|+++|+|||| |.+.+.+..+.. .+-
T Consensus 2 ~~V~KFGGssv~-------~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (441)
T TIGR00657 2 LIVQKFGGTSVG-------NAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIE 74 (441)
T ss_pred CEEEEeCcccCC-------CHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 579999999998 5789999999999888888999999988 444444322210 000
Q ss_pred --------------------------CCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccc-----cch----
Q 024480 87 --------------------------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AEP---- 131 (267)
Q Consensus 87 --------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-----~~~---- 131 (267)
+....+.+..+++++++.++..+|+++|+++..+++.+...+ .+.
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~ 154 (441)
T TIGR00657 75 ILERLIPQAIAEELKRLLDAELVLEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVII 154 (441)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecH
Confidence 011233444568889999999999999999988877654221 111
Q ss_pred HHH-HHHHHHhhCCCEEEEeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccc
Q 024480 132 YIR-RRAVRHLEKGRVVIFAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 201 (267)
Q Consensus 132 ~~~-~~l~~ll~~g~iPIi~g~~g-----~----~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~ 201 (267)
..+ +.+.++++.|.|||++||.+ . .++++|++|+++|.+|+|++|++||||||||++||+.+|+++++++
T Consensus 155 ~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~ 234 (441)
T TIGR00657 155 EILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDE 234 (441)
T ss_pred hhhHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCc
Confidence 112 33557889999999999722 1 2468999999999999999999999999999999999999999999
Q ss_pred cCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 202 LTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 202 Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
++++|+.++ |...+|++|+.++.++++|++|.|+++|+ ..||+|.+.
T Consensus 235 is~~ea~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~---------~~GT~I~~~ 284 (441)
T TIGR00657 235 ISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPE---------APGTLIVAS 284 (441)
T ss_pred cCHHHHHHHHhcCCcccCHHHHHHHHHcCCeEEEecCCCCC---------CCceEEEeC
Confidence 999998875 77788999999999999999999999886 569999865
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis. |
| >cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-31 Score=235.74 Aligned_cols=213 Identities=26% Similarity=0.348 Sum_probs=164.5
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-c---C----------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-G---N---------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-~---~---------------- 83 (267)
|.|.||||+++. +.+.++++++.|.... +.++++|+++ |.+.+.+..+ . .
T Consensus 1 m~V~KFGGtSv~-------~~~~i~~v~~iI~~~~--~~~~vvVvSA~~gvTd~L~~~~~~a~~~~~~~~~~l~~i~~~h 71 (293)
T cd04243 1 MKVLKFGGTSVA-------SAERIRRVADIIKSRA--SSPVLVVVSALGGVTNRLVALAELAASGDDAQAIVLQEIRERH 71 (293)
T ss_pred CEEEEECccccC-------CHHHHHHHHHHHHHhc--CCCEEEEEcCCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 479999999998 6788999998887643 6688888888 4322221110 0 0
Q ss_pred -------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc
Q 024480 84 -------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 126 (267)
Q Consensus 84 -------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~ 126 (267)
..+++...+.+...++++++.+++.+|++.|+++.++++...-
T Consensus 72 ~~~~~~L~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i 151 (293)
T cd04243 72 LDLIKELLSGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELL 151 (293)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeE
Confidence 0012233355556788999999999999999999988765431
Q ss_pred c----ccch---HH--HHHHHHHhhC-CCEEEEeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 024480 127 E----VAEP---YI--RRRAVRHLEK-GRVVIFAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYD 187 (267)
Q Consensus 127 ~----~~~~---~~--~~~l~~ll~~-g~iPIi~g~~g-----~----~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~ 187 (267)
. .... +. .+.+..+++. +.|||++||.+ . .+++||++|+.+|.+++|++|++||||||||+
T Consensus 152 ~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt 231 (293)
T cd04243 152 LTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYT 231 (293)
T ss_pred EecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCC
Confidence 1 1111 11 2234556665 89999999843 1 35789999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 188 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 188 ~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
+||+.+|++++|++++|+|+.++ |...+|+.|+.+|.+++||++|.|+++|+ ..||+|.
T Consensus 232 ~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~i~i~~~~~p~---------~~GT~I~ 293 (293)
T cd04243 232 ADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPE---------APGTLIS 293 (293)
T ss_pred CCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCC---------CCCCEeC
Confidence 99999999999999999998874 88889999999999999999999999987 6799984
|
These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK- |
| >PRK06291 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-31 Score=249.73 Aligned_cols=217 Identities=25% Similarity=0.322 Sum_probs=172.1
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcC--------------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGN-------------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~-------------------- 83 (267)
++|.||||+++. +.+.++++++.|.+..++++++|+|.++ |.+.+.+..+.+
T Consensus 2 ~~V~KFGGtSv~-------~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (465)
T PRK06291 2 RLVMKFGGTSVG-------DGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRDIAKVKDFIADLRE 74 (465)
T ss_pred cEEEEeCcccCC-------CHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 479999999998 5789999999998776678889999988 432222111000
Q ss_pred ----------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecc
Q 024480 84 ----------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 123 (267)
Q Consensus 84 ----------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~ 123 (267)
..++++..|.+..+++.+++.++..+|+++|+++.+++++
T Consensus 75 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~ 154 (465)
T PRK06291 75 RHYKAIEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGG 154 (465)
T ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchH
Confidence 0112233456667889999999999999999999998876
Q ss_pred ccccc-----c--------chHHHHHHHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeec
Q 024480 124 RMSEV-----A--------EPYIRRRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATN 181 (267)
Q Consensus 124 ~~~~~-----~--------~~~~~~~l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTD 181 (267)
+.+.+ . ..++.+.+..+++.|.|||++||.+ ..+++||++|+++|.+|+|++|++|||
T Consensus 155 ~~~i~t~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~td 234 (465)
T PRK06291 155 EAGIITDSNFGNARPLPKTYERVKERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTD 234 (465)
T ss_pred HCcEEecCCCCceeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEEC
Confidence 64211 1 1123334556788999999999722 235799999999999999999999999
Q ss_pred cCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 182 VdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
|||||++||+.+|+++++++++|+|+.++ |...+|++|+.+|.++|||++|.|+++|+ ..||+|...
T Consensus 235 V~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~---------~~gt~i~~~ 304 (465)
T PRK06291 235 VDGVMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPE---------FPGTLITSD 304 (465)
T ss_pred CCCCCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCC---------CCceEEEec
Confidence 99999999999999999999999998875 78888999999999999999999999886 679999754
|
|
| >cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.4e-31 Score=233.64 Aligned_cols=212 Identities=24% Similarity=0.279 Sum_probs=164.6
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh----cC----------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA----GN---------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~----~~---------------- 83 (267)
|.|.||||+++. +.+.++++++.|... +.++|+|+++ |.+.+.+..+ ..
T Consensus 1 m~V~KFGGtSv~-------~~~~i~~v~~ii~~~---~~~~vVVVSA~~~vTd~L~~~~~~~~~~~~~~~~~~l~~l~~~ 70 (292)
T cd04258 1 MVVAKFGGTSVA-------DYAAMLRCAAIVKSD---ASVRLVVVSASAGVTNLLVALADAAESGEEIESIPQLHEIRAI 70 (292)
T ss_pred CEEEEECccccC-------CHHHHHHHHHHHhcc---CCCEEEEEeCCCCchHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 479999999998 577889998888753 5678888888 4322221100 00
Q ss_pred -----------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc--
Q 024480 84 -----------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS-- 126 (267)
Q Consensus 84 -----------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-- 126 (267)
..++++..|.+..+++++++.+++.+|++.|+++.++++.+..
T Consensus 71 h~~~~~~L~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t 150 (292)
T cd04258 71 HFAILNRLGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRT 150 (292)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEe
Confidence 0112234566777899999999999999999999988875541
Q ss_pred --ccc--c---hHHHHHH---HHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 024480 127 --EVA--E---PYIRRRA---VRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 187 (267)
Q Consensus 127 --~~~--~---~~~~~~l---~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~ 187 (267)
.+. + ....+.+ .+.+..+.|||++||.| ..+++||++|+.+|.+|+|+++++||||||||+
T Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~ 230 (292)
T cd04258 151 DSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYT 230 (292)
T ss_pred cCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCC
Confidence 111 1 1122222 23345678999999844 246899999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 188 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 188 ~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
+||+.+|+++++++++|+|+.++ |...+|+.+..++.+++||++|.|.++|+ ..||+|+
T Consensus 231 ~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~~~~ipi~i~~~~~p~---------~~GT~I~ 292 (292)
T cd04258 231 TDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPE---------AGGTLIT 292 (292)
T ss_pred CCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHHHcCCcEEEEeCCCCC---------CCCceeC
Confidence 99999999999999999999875 88899999999999999999999999987 7799984
|
AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. |
| >PRK08373 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=236.40 Aligned_cols=217 Identities=22% Similarity=0.297 Sum_probs=166.6
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-c----------------
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-G---------------- 82 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-~---------------- 82 (267)
|..+++|.|||||++.+ .++++++.|+.. .+++++|+|+|+ |.+.+.+..+ .
T Consensus 1 ~~~~m~V~KFGGsSv~~---------~~~~v~~ii~~~-~~~~~vvVVVSA~~gvTd~L~~l~~~~~~~~l~~i~~~h~~ 70 (341)
T PRK08373 1 MVEKMIVVKFGGSSVRY---------DFEEALELVKYL-SEENEVVVVVSALKGVTDKLLKLAETFDKEALEEIEEIHEE 70 (341)
T ss_pred CCCCCEEEEECCcchHh---------HHHHHHHHHHHH-hcCCCEEEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45678999999999972 467788877743 457899999988 4333222111 0
Q ss_pred ---CC-------------------CC-CCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc----cccchH---
Q 024480 83 ---NS-------------------GL-DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVAEPY--- 132 (267)
Q Consensus 83 ---~~-------------------~l-~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~----~~~~~~--- 132 (267)
.. .+ +++..|.+..+++++++.+++.+|.++|+++.++++++.- .+....
T Consensus 71 ~~~~L~~~~~~~~~~l~~~~~~~~~~~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~ 150 (341)
T PRK08373 71 FAKRLGIDLEILSPYLKKLFNSRPDLPSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDI 150 (341)
T ss_pred HHHHhccchhhHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeech
Confidence 00 11 1234577778999999999999999999999988765431 111111
Q ss_pred ----HH-HHHHHHhhCCCEEEEeCCCCC--------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccc
Q 024480 133 ----IR-RRAVRHLEKGRVVIFAAGTGN--------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 199 (267)
Q Consensus 133 ----~~-~~l~~ll~~g~iPIi~g~~g~--------~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li 199 (267)
.+ +.+.++++.|.|||++||.+. .+++||++|+.+|.+|+|++++|||||||||++||+.+|+|+++
T Consensus 151 ~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i 230 (341)
T PRK08373 151 KKSKRNVKILYELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLI 230 (341)
T ss_pred hhhhhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEc
Confidence 11 235578899999999998542 34689999999999999999999999999999999999999999
Q ss_pred cccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCC
Q 024480 200 DTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 200 ~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
++++|+|+.++ |...+++.|..+|.+ ++|++|.|.++|+ .||+|....
T Consensus 231 ~~isy~Ea~ela~~Gakvlhp~ai~~a~~-~Ipi~v~~t~~~~----------~GT~I~~~~ 281 (341)
T PRK08373 231 PYLSYDEALIAAKLGMKALHWKAIEPVKG-KIPIIFGRTRDWR----------MGTLVSNES 281 (341)
T ss_pred ccCCHHHHHHHHHCcChhhhHHHHHHHHc-CCcEEEecCCCCC----------CCcEEecCC
Confidence 99999999875 677779999999999 9999999987663 599997543
|
|
| >cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=232.47 Aligned_cols=215 Identities=25% Similarity=0.317 Sum_probs=163.8
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHh-cC-----CCCCCCh---HHHHHH
Q 024480 26 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GN-----SGLDRSS---ADYIGM 96 (267)
Q Consensus 26 iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~-~~-----~~l~~~~---~~~~~~ 96 (267)
+||||||++++++ +.+.+++++|+.+++.|.++|||||+|++.+.+.+. +. .+++... .+...+
T Consensus 1 ~ViKlGGs~l~~~-------~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~ 73 (256)
T cd04238 1 VVIKYGGSAMKDE-------ELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEM 73 (256)
T ss_pred CEEEEChHHhcCc-------cHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHH
Confidence 5899999999854 467889999999988999999999999987665432 21 1222111 233333
Q ss_pred -HHHHHHHHHHHHHHHHcCCCeeEeecccccccc-c---------hH------HH-HHHHHHhhCCCEEEEeCC----CC
Q 024480 97 -LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-E---------PY------IR-RRAVRHLEKGRVVIFAAG----TG 154 (267)
Q Consensus 97 -~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-~---------~~------~~-~~l~~ll~~g~iPIi~g~----~g 154 (267)
++..+|..+ .++|.++|+++.++++.+...+. + .| ++ +.+..+|++|.|||+++. .+
T Consensus 74 a~~g~ln~~i-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~~~~~~g 152 (256)
T cd04238 74 VLAGKVNKEL-VSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDG 152 (256)
T ss_pred HHcCchHHHH-HHHHHhCCCCCCCcccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCcEECCCC
Confidence 324677776 57899999998877765532110 0 01 22 335688999999999984 12
Q ss_pred -CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHHHHHHhC
Q 024480 155 -NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQEN 226 (267)
Q Consensus 155 -~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa~~a~~~ 226 (267)
..++++|++|+++|.+|+|++|+|||||||||++ +++++++++++|+.++ .+|+| |+++|..+.++
T Consensus 153 ~~~~~~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~ 226 (256)
T cd04238 153 ETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEG 226 (256)
T ss_pred cEEEECHHHHHHHHHHHcCCCEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHh
Confidence 2468999999999999999999999999999986 2689999999887654 36788 89999999998
Q ss_pred CC-cEEEEcCCCCCcHHHHhcC-CCcceEE
Q 024480 227 NI-PVVVFNLNQPGNIAKAIQG-ERVGTLI 254 (267)
Q Consensus 227 Gi-~v~I~ng~~~~~i~~~l~g-~~~GT~I 254 (267)
|+ +++|+|++.|++|.++|.+ ++.||+|
T Consensus 227 g~~~v~I~~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 227 GVRKVHIIDGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred CCCEEEEeCCCCCcHHHHHHhcCCCCCCCC
Confidence 87 5999999999999999987 5689975
|
Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). |
| >cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=229.27 Aligned_cols=224 Identities=27% Similarity=0.357 Sum_probs=166.8
Q ss_pred eEEEEeccccccCCCC---CCCCHHHHHHHHHHHHHHHHCCCeEEEEECCch----HHhhhHHhc----CCCCCCChHHH
Q 024480 25 RVLLKVSGEALAGDHT---QNIDPKITMAIAREVASVTRLGIEVAIVVGGGN----IFRGASAAG----NSGLDRSSADY 93 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~---~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~----~~~~~~~~~----~~~l~~~~~~~ 93 (267)
++|||+||++|..++. ...+.+.++..+++|+++.+.|++++||||+|+ +.++..... .+.++....+.
T Consensus 1 rivialgGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~~ 80 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMS 80 (308)
T ss_pred CEEEEecHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcchh
Confidence 5899999999986542 467889999999999999999999999999995 433333221 12344444566
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEeecccccccc--------------ch------------------------H---
Q 024480 94 IGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA--------------EP------------------------Y--- 132 (267)
Q Consensus 94 ~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~--------------~~------------------------~--- 132 (267)
.++++.+++. .+.+.|.++|++....+.++...+. .. |
T Consensus 81 ~G~ig~~~~~-al~~~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrv 159 (308)
T cd04235 81 QGMIGYMLQQ-ALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV 159 (308)
T ss_pred hHHHHHHHHH-HHHHHHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceee
Confidence 7788887744 4678899889876544433321000 00 1
Q ss_pred ---------HHHH-HHHHhhCCCEEEEeCCCCCC-------------CCCcHHHHHHHHHhcCCcEEEEeeccCccccCC
Q 024480 133 ---------IRRR-AVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 189 (267)
Q Consensus 133 ---------~~~~-l~~ll~~g~iPIi~g~~g~~-------------~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~d 189 (267)
++.+ +..+|++|+|||++|..|++ ++|+|++|+++|.+++||+|+++|||||||+++
T Consensus 160 V~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~ 239 (308)
T cd04235 160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINF 239 (308)
T ss_pred eCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCC
Confidence 1123 34689999999999764432 367799999999999999999999999999965
Q ss_pred CCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhC-CCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 190 PRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 190 P~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~-Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
| +|++++|++|+++|+.++ ++|+| |+++|..+++. +.+++|.+ ++.+.++|+|+ .||+|.
T Consensus 240 ~--~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i~~aL~G~-~GT~I~ 308 (308)
T cd04235 240 G--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGK-AGTVIV 308 (308)
T ss_pred C--CCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence 4 588999999999887654 46788 88888766665 56789876 67889999998 799983
|
Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK). |
| >TIGR00746 arcC carbamate kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=228.86 Aligned_cols=224 Identities=21% Similarity=0.332 Sum_probs=156.7
Q ss_pred ceEEEEeccccccCCCC-C--CCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcC----CCCCCChHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHT-Q--NIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN----SGLDRSSADYIGM 96 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~-~--~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~----~~l~~~~~~~~~~ 96 (267)
|++|||+||++|.++++ . .++.+.++.++++|++|+++|+++|||||+|.+.... .++. ..++..+.+.+.+
T Consensus 1 ~riViklGgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~-~l~~~~~~~~~~~~p~~~~~A 79 (310)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNL-LLQNQAADSEVPAMPLDVLGA 79 (310)
T ss_pred CeEEEEECHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHH-HhccccccccCCCCcchHHHH
Confidence 68999999999997542 2 4668899999999999999999999999998865332 2221 1122223344333
Q ss_pred -----HHHHHHHHHHHHHHHHcCCCee-----Eeecccccc--ccch-------H-------------------------
Q 024480 97 -----LATVMNAIFLQATMESIGIPTR-----VQTAFRMSE--VAEP-------Y------------------------- 132 (267)
Q Consensus 97 -----~~~~~~~~l~~~~l~~~Gi~~~-----~~~~~~~~~--~~~~-------~------------------------- 132 (267)
++..++. .+.+.|..+|++.. .|..++..| |..| |
T Consensus 80 ~~qg~lg~~~~~-~l~~~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~r 158 (310)
T TIGR00746 80 MSQGMIGYMLQQ-ALNNELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWR 158 (310)
T ss_pred hhHHHHHHHHHH-HHHHHHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcce
Confidence 3333322 23445558886542 244444433 2110 0
Q ss_pred -----------HHHH-HHHHhhCCCE---------EEEeCCCC----CCCCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 024480 133 -----------IRRR-AVRHLEKGRV---------VIFAAGTG----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 187 (267)
Q Consensus 133 -----------~~~~-l~~ll~~g~i---------PIi~g~~g----~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~ 187 (267)
++.+ +..+|++|.+ ||++.+.. ..++|+|.+|+++|.+|+||+|+|+|||||||+
T Consensus 159 rvv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~ 238 (310)
T TIGR00746 159 RVVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYI 238 (310)
T ss_pred EeecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeC
Confidence 1223 4468999984 44433211 125799999999999999999999999999998
Q ss_pred CCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhC-CCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 188 DNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 188 ~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~-Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
++ .+|++++|++++++|+.++ ++|+| |++||..+++. +.+++|++ ++.+.++++|+ .||+|.
T Consensus 239 ~~--~~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 239 NY--GKPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-AGTRVT 309 (310)
T ss_pred CC--CCCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence 64 3688999999999887653 46888 88999665555 56899987 68899999999 899996
|
The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff. |
| >cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=230.42 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccc-------cchH---HHHHHHHHh-h-CCCEEEEeCCCC----
Q 024480 91 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-------AEPY---IRRRAVRHL-E-KGRVVIFAAGTG---- 154 (267)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-------~~~~---~~~~l~~ll-~-~g~iPIi~g~~g---- 154 (267)
.|.+..+++++++.+++.+|++.|+++.++++++.-.. ...+ +.+.+...+ + .+.|||++||.|
T Consensus 125 ~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~ 204 (306)
T cd04247 125 KDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPG 204 (306)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEecCCC
Confidence 35556688899999999999999999998876554111 1111 122222333 2 568999999843
Q ss_pred -----CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhC
Q 024480 155 -----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQEN 226 (267)
Q Consensus 155 -----~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~ 226 (267)
..+++||++|+++|..|+|+++++||||||||++||+.+|+|++|++|+|+|+.++ |...+|++++.+|.++
T Consensus 205 G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~ 284 (306)
T cd04247 205 GLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKA 284 (306)
T ss_pred CCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHc
Confidence 24689999999999999999999999999999999999999999999999998876 7889999999999999
Q ss_pred CCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 227 NIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 227 Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
+||++|.|.++|+ ..||+|.+
T Consensus 285 ~Ipi~i~nt~~P~---------~~GT~I~~ 305 (306)
T cd04247 285 RIPIRIKNVENPR---------GEGTVIYP 305 (306)
T ss_pred CCcEEEecCCCCC---------CCCcEEcC
Confidence 9999999999987 67999975
|
Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. |
| >PRK09084 aspartate kinase III; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=243.06 Aligned_cols=213 Identities=22% Similarity=0.251 Sum_probs=166.9
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhc-C-------------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAG-N------------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~-~------------------- 83 (267)
|+|.||||+++. +.+.++++++.|++ ++.++|+|+++ |.+.+.+..+- .
T Consensus 1 m~V~KFGGtSv~-------~~e~i~~v~~ii~~---~~~~~vvVVSA~~~~Td~L~~~~~~~~~~~~~~~~~~~i~~~h~ 70 (448)
T PRK09084 1 LVVAKFGGTSVA-------DFDAMNRSADIVLS---NPNTRLVVLSASAGVTNLLVALAEGAEPGDERLALLDEIRQIQY 70 (448)
T ss_pred CEEEEECccCcC-------CHHHHHHHHHHHhc---CCCCEEEEEcCCCCchHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 579999999998 67889999998875 46788888888 53332221110 0
Q ss_pred ---------------------------C----CCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc----cc
Q 024480 84 ---------------------------S----GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EV 128 (267)
Q Consensus 84 ---------------------------~----~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~----~~ 128 (267)
. .++++..|.+...++++++.++..+|+++|+++.++++.+.- .+
T Consensus 71 ~~~~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~ 150 (448)
T PRK09084 71 AILDRLGDPNVVREEIERLLENITVLAEAASLATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRF 150 (448)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHhhhhcCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCC
Confidence 0 122334566667889999999999999999999988765441 11
Q ss_pred cc--h---HHH----HHHHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCC
Q 024480 129 AE--P---YIR----RRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNP 190 (267)
Q Consensus 129 ~~--~---~~~----~~l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP 190 (267)
.. + ... +.+.++++.+ |||++||.| ..+++||++|+++|..|+|+++++||||||||++||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP 229 (448)
T PRK09084 151 GRAEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDP 229 (448)
T ss_pred CcccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCC
Confidence 11 1 111 2233456777 999999843 246899999999999999999999999999999999
Q ss_pred CCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 191 RRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 191 ~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
+.+|+|+++++|+|+|+.++ |...+|+.+..++.++++|++|.|+++|+ ..||+|...
T Consensus 230 ~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~---------~~GT~I~~~ 290 (448)
T PRK09084 230 RIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPE---------AGGTWICND 290 (448)
T ss_pred CCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEEeCCCCC---------CCceEEecC
Confidence 99999999999999999875 78889999999999999999999999886 679999764
|
|
| >cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=226.62 Aligned_cols=214 Identities=19% Similarity=0.211 Sum_probs=158.6
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHH-CCCeEEEEECCchHHhhhHH-hcC-----CCCCCChH---HHHH
Q 024480 26 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRGASA-AGN-----SGLDRSSA---DYIG 95 (267)
Q Consensus 26 iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~-~g~~vViVhGgG~~~~~~~~-~~~-----~~l~~~~~---~~~~ 95 (267)
+|||||||++++ .+.+++++++|+.+.. .|.++|||||+|++.+.+.+ .+. ++++.... +.+.
T Consensus 1 ~ViK~GGs~l~~-------~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~ 73 (252)
T cd04249 1 LVIKLGGALLET-------EAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYIT 73 (252)
T ss_pred CEEEEChHHhcC-------hhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHH
Confidence 589999999974 3578899999998754 56899999999998765432 221 23332222 2222
Q ss_pred H-HHHHHHHHHHHHHHHHcCCCeeEeeccccccc---------c---c-hHHH-HHHHHHhhCCCEEEEeCC----CC-C
Q 024480 96 M-LATVMNAIFLQATMESIGIPTRVQTAFRMSEV---------A---E-PYIR-RRAVRHLEKGRVVIFAAG----TG-N 155 (267)
Q Consensus 96 ~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~---------~---~-~~~~-~~l~~ll~~g~iPIi~g~----~g-~ 155 (267)
+ ++..+|..+++.. .++|+++.++++.+...+ . + ..++ +.+.++++.|.|||+++. .| .
T Consensus 74 ~~~~~~~n~~lv~~l-~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~ 152 (252)
T cd04249 74 GALAGTANKQLMAQA-IKAGLKPVGLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQL 152 (252)
T ss_pred HHHcCcccHHHHHHH-HhCCCCceeeeccCCCEEEEEEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCE
Confidence 2 2356777777544 579999988776643211 0 0 0122 335678999999999984 22 3
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHHHHHHhCC-
Q 024480 156 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENN- 227 (267)
Q Consensus 156 ~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa~~a~~~G- 227 (267)
.++++|++|+++|..|+|+ ++|+|||||||++|| ++|++++++|+.++ .+++| |++++..+++.+
T Consensus 153 ~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~ 225 (252)
T cd04249 153 MNVNADQAATAIAQLLNAD-LVLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLR 225 (252)
T ss_pred eeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCC
Confidence 4689999999999999999 789999999998764 68999999887664 36788 788887776664
Q ss_pred CcEEEEcCCCCCcHHHHhcCCCcceEE
Q 024480 228 IPVVVFNLNQPGNIAKAIQGERVGTLI 254 (267)
Q Consensus 228 i~v~I~ng~~~~~i~~~l~g~~~GT~I 254 (267)
++++|+|++.|+.+.++|+|+..||+|
T Consensus 226 ~~v~I~~g~~~~~l~~~l~g~~~GT~I 252 (252)
T cd04249 226 RGIDIASWQYPEQLTALLAGEPVGTKI 252 (252)
T ss_pred CeEEEEeCCCccHHHHHHcCCCCCcCC
Confidence 689999999999999999999999986
|
There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK). |
| >cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=226.51 Aligned_cols=206 Identities=23% Similarity=0.354 Sum_probs=157.1
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhH-HhcC--------CCC--CCC---hH
Q 024480 26 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN--------SGL--DRS---SA 91 (267)
Q Consensus 26 iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~-~~~~--------~~l--~~~---~~ 91 (267)
+|||||||++++ +++++++|+.+ |.++|||||||++.+... +.+. .|+ +.+ ..
T Consensus 1 ~VIKlGGs~l~~----------~~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l 67 (257)
T cd04251 1 IVVKIGGSVVSD----------LDKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETL 67 (257)
T ss_pred CEEEEChHHhhC----------hHHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHH
Confidence 589999999983 25788999887 889999999999876543 2221 132 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccc-------------------cchH------HH-HHHHHHhhCCC
Q 024480 92 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-------------------AEPY------IR-RRAVRHLEKGR 145 (267)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-------------------~~~~------~~-~~l~~ll~~g~ 145 (267)
+.+.+..+.+|..++ +.|.++|+++.++++.+...+ +..| ++ +.+..+|++|+
T Consensus 68 ~~~~~a~~~ln~~iv-~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~ 146 (257)
T cd04251 68 EVFVMVMGLINKKIV-ARLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGY 146 (257)
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCC
Confidence 333444477888766 599999999988776543110 0001 23 33567899999
Q ss_pred EEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcc--
Q 024480 146 VVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVM-- 215 (267)
Q Consensus 146 iPIi~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~m-- 215 (267)
|||++++ .|. .++++|++|+++|.+|+|++|+|+|||||||++ ++++++++++|+.++ .+++|
T Consensus 147 vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~ 219 (257)
T cd04251 147 LPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKR 219 (257)
T ss_pred eEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHH
Confidence 9999985 222 358999999999999999999999999999973 679999999887765 36788
Q ss_pred hHHHHHHHHhCCCc-EEEEcCCCCCcHHHHhcCCCcceEE
Q 024480 216 DMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLI 254 (267)
Q Consensus 216 k~~aa~~a~~~Gi~-v~I~ng~~~~~i~~~l~g~~~GT~I 254 (267)
|++++..+.++|++ ++|++++.|+++.++|.|+ ||+|
T Consensus 220 Kl~aa~~a~~~gv~~v~i~~g~~~~~l~~~l~g~--gT~i 257 (257)
T cd04251 220 KLLAAAEAVEGGVREVVIGDARADSPISSALNGG--GTVI 257 (257)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCccHHHHHHcCC--CcCC
Confidence 99999999999994 9999999999999999875 9975
|
This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK). |
| >PRK09034 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=239.35 Aligned_cols=214 Identities=21% Similarity=0.236 Sum_probs=166.9
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-ch-------HHhhhHHhcC-------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GN-------IFRGASAAGN------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~-------~~~~~~~~~~------------- 83 (267)
|.|.||||+++. +.+.++++++.|.+ ++.++|+|+++ |. +.+.+..+..
T Consensus 1 m~V~KFGGtSv~-------~~~~i~~v~~ii~~---~~~~~vvVVSA~~~~~~~~~~~Td~L~~~~~~~~~~~~~~~~~~ 70 (454)
T PRK09034 1 MKVVKFGGSSLA-------SAEQFKKVLNIVKS---DPERKIVVVSAPGKRFKEDTKVTDLLILYAEAVLAGEDYEDIFE 70 (454)
T ss_pred CEEEEeCccccC-------CHHHHHHHHHHHhc---cCCCEEEEEcCCcCCCCCccChHHHHHHHHHHHhcCCcHHHHHH
Confidence 469999999998 56788888888864 35678888887 31 3332211100
Q ss_pred ----------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecccccccc
Q 024480 84 ----------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA 129 (267)
Q Consensus 84 ----------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~ 129 (267)
...+++..|.+...++++++.+++.+|++.|+++.++++++.+.+.
T Consensus 71 ~~~~~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t 150 (454)
T PRK09034 71 AIIARYAEIAKELGLDADILEKIEEILEHLANLASRNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIV 150 (454)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEe
Confidence 0112234466677889999999999999999999988876653221
Q ss_pred c-hH--------HHHHHHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCC
Q 024480 130 E-PY--------IRRRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR 191 (267)
Q Consensus 130 ~-~~--------~~~~l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~ 191 (267)
. .+ ..+.+.+.+..+.|||++||.| ..++++|+.|+++|.+|+|+.+.+||||||||++||+
T Consensus 151 ~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr 230 (454)
T PRK09034 151 TDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPR 230 (454)
T ss_pred cCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCC
Confidence 1 11 0122344555778999999843 2468999999999999999999999999999999999
Q ss_pred CCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 192 RNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 192 ~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
.+|+|++++++||+|+.++ |...||++|+.+|.+++||++|.|.++|+ ..||+|..+
T Consensus 231 ~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~Ipi~v~~~~~p~---------~~GT~I~~~ 290 (454)
T PRK09034 231 IVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPE---------DPGTLIVPD 290 (454)
T ss_pred CCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCCCEEEEcCCCCC---------CCccEEEec
Confidence 9999999999999999885 88999999999999999999999999886 679999754
|
|
| >PRK05925 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=238.10 Aligned_cols=215 Identities=16% Similarity=0.189 Sum_probs=165.7
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-c------------------
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-G------------------ 82 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-~------------------ 82 (267)
|.++|.||||+++. +.+.++++++.|.+ . .++++|+++ |.+.+.+..+ .
T Consensus 1 ~~~~V~KFGGtSv~-------~~e~i~~v~~ii~~---~-~~~vVVvSA~~~~Td~L~~~~~~a~~~~~~~~~~i~~~~~ 69 (440)
T PRK05925 1 MAPLVYKFGGTSLG-------TAESIRRVCDIICK---E-KPSFVVVSAVAGVTDLLEEFCRLSKGKREALTEKIREKHE 69 (440)
T ss_pred CCcEEEEECccccC-------CHHHHHHHHHHHhc---C-CCEEEEECCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45789999999998 56788888888864 2 467777778 4333222110 0
Q ss_pred ----C--------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccc--------
Q 024480 83 ----N--------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-------- 130 (267)
Q Consensus 83 ----~--------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~-------- 130 (267)
. ..+++...|.+..+++++++.+++.+|++.|+++.++++++......
T Consensus 70 ~~~~~l~~~~~~~~~~~~L~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~ 149 (440)
T PRK05925 70 EIAKELGIEFSLSPWWERLEHFEDVEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPD 149 (440)
T ss_pred HHHHHhhcchhhhHHHHHHHHHHHhCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccC
Confidence 0 01123344556678899999999999999999999887755421111
Q ss_pred -hHHHHHHHH-HhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccc
Q 024480 131 -PYIRRRAVR-HLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 199 (267)
Q Consensus 131 -~~~~~~l~~-ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li 199 (267)
....+.+.+ .++.+.|||++||.| ..+++||++|+++|.+++|+.|++||||||||++||+.+|+|++|
T Consensus 150 ~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i 229 (440)
T PRK05925 150 LALMQTAWHELALQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLI 229 (440)
T ss_pred HHHHHHHHHHhhccCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEe
Confidence 112233333 345778999999843 257999999999999999999999999999999999999999999
Q ss_pred cccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 200 DTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 200 ~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
++++|+|+.++ |...+++.++++|.++|+|++|.|+++|+ +.||+|.+.
T Consensus 230 ~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~Ipi~I~~~~~p~---------~~GT~i~~~ 281 (440)
T PRK05925 230 PELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVT---------KGGTWIYAS 281 (440)
T ss_pred eEECHHHHHHHHhCCCCcCCHHHHHHHHHCCCcEEEecCCCCC---------CCccEEecC
Confidence 99999998876 77788999999999999999999999987 579999764
|
|
| >cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=216.78 Aligned_cols=192 Identities=23% Similarity=0.349 Sum_probs=151.5
Q ss_pred EEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhc-CCCCCCChHHHHHHHHHHHHHHH
Q 024480 27 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIF 105 (267)
Q Consensus 27 VIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~l 105 (267)
|||+|||++. + +..+.+.++++. |++++||.|||.|++.++... ..|+++...|+++++++++|+.+
T Consensus 1 vvKiGGsl~~-------~---~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~ 68 (203)
T cd04240 1 VVKIGGSLIR-------E---AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYL 68 (203)
T ss_pred CEEEcccccc-------c---HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 7999999865 2 345555565543 789999999999987765432 36788889999999999999976
Q ss_pred HHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCC------C---CCCCCCcHHHHHHHHHhcCCcEE
Q 024480 106 LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG------T---GNPFFTTDTAAALRCAEINAEVV 176 (267)
Q Consensus 106 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~------~---g~~~~~sD~~Aa~lA~~l~Ad~L 176 (267)
++..+...+.. ...++..+++.|.+||+.+. . ..+++++|++|+++|..|+|++|
T Consensus 69 l~~~~~~~~~~----------------~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~L 132 (203)
T cd04240 69 LADLEPRLVAR----------------TLAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRL 132 (203)
T ss_pred HhccCCccccC----------------CHHHHHHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEE
Confidence 64222211100 01245678899999999985 1 13569999999999999999999
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCC-CcceEE
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-RVGTLI 254 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~-~~GT~I 254 (267)
+++|||||||++| ++++++++..|+.. .+.|+..+++.+.++|++++|+|+++|+++.+++.|+ .+||+|
T Consensus 133 i~ltdVdGVy~~d------a~~i~~i~~~e~~~--~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~I 203 (203)
T cd04240 133 VIVTDVDGIYEKD------GKLVNEIAAAELLG--ETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI 203 (203)
T ss_pred EEEeCCccccCCC------CcCccccCHHHhCC--CCeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence 9999999999864 78999999887653 5667776778889999999999999999999999998 789975
|
Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily. |
| >PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=220.78 Aligned_cols=202 Identities=27% Similarity=0.383 Sum_probs=146.1
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCCh------HHH----
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS------ADY---- 93 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~------~~~---- 93 (267)
|++|||||||+++++ +.+ +.+++++|+.+.+.|+++|||||+|.+++.+... +++.+.. .+.
T Consensus 1 k~~ViK~GGs~l~~~-----~~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~ 72 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDK-----DEE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEK--YGIEPKFVDGSRVTDIETGL 72 (242)
T ss_dssp SEEEEEE-HHGHSSH-----SHH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH--CTHTTSEETHHCHBHHHHHH
T ss_pred CeEEEEECchhhCCc-----hHH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHh--ccCCcccchhhhhhhhhhhH
Confidence 689999999999953 125 9999999999999999999999999988776543 2232211 110
Q ss_pred -H-HHHHHHHHH-----HHHHHHHHHcCCCeeEeeccccccccc-----hHHHHHHHHHhhCCCEEEEeCCC-----CC-
Q 024480 94 -I-GMLATVMNA-----IFLQATMESIGIPTRVQTAFRMSEVAE-----PYIRRRAVRHLEKGRVVIFAAGT-----GN- 155 (267)
Q Consensus 94 -~-~~~~~~~~~-----~l~~~~l~~~Gi~~~~~~~~~~~~~~~-----~~~~~~l~~ll~~g~iPIi~g~~-----g~- 155 (267)
. ..+...++. .+ ...+..++..+....+.+.+.... ....+.+.++|++|.|||++|+. |.
T Consensus 73 ~~~~~~~~~l~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~ 151 (242)
T PF00696_consen 73 IITMAAAAELNRDALLDEI-VSAGERLGAHAVGLSLSDGGISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEV 151 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHCTHHEEEHHHTGGTEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTE
T ss_pred HHHHHHhhccccchhHHHH-HHhhhhhhHHHHhhhhhcccchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCc
Confidence 1 112222333 33 356777787766444333211110 11234467889999999999862 32
Q ss_pred ---CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhcC------CCcc--hHHHH-HHH
Q 024480 156 ---PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKD------LSVM--DMTAI-TLC 223 (267)
Q Consensus 156 ---~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg------~g~m--k~~aa-~~a 223 (267)
+++++|++|+++|.+|+|++|+|||||||||++||+.+|+++++++|+++|+.++. +++| |+.++ +.+
T Consensus 152 ~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~ 231 (242)
T PF00696_consen 152 TTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAA 231 (242)
T ss_dssp EEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999998764 7788 44554 555
Q ss_pred HhCCCcEEEEc
Q 024480 224 QENNIPVVVFN 234 (267)
Q Consensus 224 ~~~Gi~v~I~n 234 (267)
.+++++++|+|
T Consensus 232 ~~~~~~v~I~n 242 (242)
T PF00696_consen 232 EEGGIPVHIIN 242 (242)
T ss_dssp HHTTSEEEEEE
T ss_pred HcCCCcEEEeC
Confidence 55688999986
|
In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A .... |
| >PLN02551 aspartokinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=238.89 Aligned_cols=219 Identities=23% Similarity=0.274 Sum_probs=168.0
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh----cC------------
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA----GN------------ 83 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~----~~------------ 83 (267)
++.-++|.||||+++. +.+.++++++.|.+.. ..++|+|+++ |.+.+.+..+ ..
T Consensus 49 ~~~~~~V~KFGGtSv~-------~~e~i~~v~~iI~~~~--~~~~vVVvSA~~~~Td~L~~~~~~a~~~~~~~~~~~~~l 119 (521)
T PLN02551 49 EKQLTVVMKFGGSSVA-------SAERMREVADLILSFP--DERPVVVLSAMGKTTNNLLLAGEKAVSCGVTNVSEIEEL 119 (521)
T ss_pred ccCceEEEEECCCccC-------CHHHHHHHHHHHHhcC--CCCEEEEEcCCCCchHHHHHHHHHHhhccccchhhHHHH
Confidence 3344579999999998 6789999999888643 2457777777 4332222110 00
Q ss_pred --------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecccc
Q 024480 84 --------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 125 (267)
Q Consensus 84 --------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~ 125 (267)
..++++..|.+..+++++++.+++.+|++.|+++.++++++.
T Consensus 120 ~~i~~~h~~~~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~ 199 (521)
T PLN02551 120 SAIRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDI 199 (521)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHc
Confidence 012233456677788999999999999999999998887665
Q ss_pred ccc-----cchHH----HHHHHH----Hh-hCCCEEEEeCCCCC----------CCCCcHHHHHHHHHhcCCcEEEEeec
Q 024480 126 SEV-----AEPYI----RRRAVR----HL-EKGRVVIFAAGTGN----------PFFTTDTAAALRCAEINAEVVLKATN 181 (267)
Q Consensus 126 ~~~-----~~~~~----~~~l~~----ll-~~g~iPIi~g~~g~----------~~~~sD~~Aa~lA~~l~Ad~Li~lTD 181 (267)
+.+ ....+ .+.+.+ .+ +.+.|||++||.|. .+++||+.|+.+|.+|+|+++.+|||
T Consensus 200 gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tD 279 (521)
T PLN02551 200 GFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKD 279 (521)
T ss_pred ceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeC
Confidence 321 11111 122222 22 35689999998441 36899999999999999999999999
Q ss_pred cCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 182 VdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
|||||+.||+.+|+|++++++||+|+.++ |...+|+++..+|.+++||++|.|.++|+ ..||+|...
T Consensus 280 V~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~pa~~~~Ipi~vknt~~p~---------~~GT~I~~~ 349 (521)
T PLN02551 280 VDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPT---------APGTLITKT 349 (521)
T ss_pred CCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHCCceEEEEecCCCC---------CCCcEEecc
Confidence 99999999999999999999999999886 89999999999999999999999999886 679999754
|
|
| >TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=222.17 Aligned_cols=209 Identities=22% Similarity=0.309 Sum_probs=153.0
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh--------------------cC
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA--------------------GN 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~--------------------~~ 83 (267)
|+|+|||||++.+ .++++++.|....+ +.++++|+|| |.+.+.+..+ ..
T Consensus 1 m~V~KFGGsSv~~---------~~~~v~~ii~~~~~-~~~~vVVVSA~~gvTd~L~~~~~~~~~~~l~~i~~~h~~~~~~ 70 (327)
T TIGR02078 1 MIVVKFGGSSVRY---------AFEEALELVKSLSE-EKRVIVVVSALKGITDCLIRYANTFDKSAALEIEEIYEEFAKE 70 (327)
T ss_pred CEEEEECCcchHH---------HHHHHHHHHHHHhc-CCCEEEEeCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999972 37888888876543 6788988888 3222211100 00
Q ss_pred CCC-------------------CCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc----cccc-----hH--H
Q 024480 84 SGL-------------------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVAE-----PY--I 133 (267)
Q Consensus 84 ~~l-------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~----~~~~-----~~--~ 133 (267)
.+. ++...|.+..+++++++.++. .|+++.++++++.- .+.+ +. .
T Consensus 71 L~~~~~~~~~~l~~~~~~~~l~~~~~~d~I~s~GE~lSa~Lla-----~gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~ 145 (327)
T TIGR02078 71 LGVDLNILSPYLKELFNPPDLPKEALRDYILSLGERLSAVIFA-----EGINGKVVDPWDIFFAKGDFGNAFIDIKKSKR 145 (327)
T ss_pred hccchhhhHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHH-----ccCCcEEEcHHHHhccCCcCCceeechhhhHh
Confidence 111 122456677788887876654 47887776654431 1111 11 1
Q ss_pred H-HHHHHHhhCCCEEEEeCCCCC--------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCH
Q 024480 134 R-RRAVRHLEKGRVVIFAAGTGN--------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY 204 (267)
Q Consensus 134 ~-~~l~~ll~~g~iPIi~g~~g~--------~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~ 204 (267)
+ +.+.++++.|.|||++||.+. .+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|
T Consensus 146 ~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy 225 (327)
T TIGR02078 146 NAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSY 225 (327)
T ss_pred hHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCH
Confidence 1 234567889999999998542 3468999999999999999999999999999999999999999999999
Q ss_pred HHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCC
Q 024480 205 QEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 205 ~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
+|+.++ |...+|+.|++++.++|+|++|.|.++|. .||+|....
T Consensus 226 ~Ea~ela~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~~----------~GT~I~~~~ 272 (327)
T TIGR02078 226 EEIKIAAKLGMKALQWKAADLAKEYKIPVLFGRTRDWR----------MGTLISNRS 272 (327)
T ss_pred HHHHHHHHCCchhhHHHHHHHHHHCCCeEEEEeCCCcC----------CCcEEecCC
Confidence 998765 66677999999999999999999998763 599997543
|
This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between. |
| >PRK12686 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=217.48 Aligned_cols=226 Identities=19% Similarity=0.276 Sum_probs=161.2
Q ss_pred cceEEEEeccccccCCCC-CCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHh-hhH-Hh--cCCCCCCChHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHT-QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR-GAS-AA--GNSGLDRSSADYIGML 97 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~-~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~-~~~-~~--~~~~l~~~~~~~~~~~ 97 (267)
|+++|||+||+++.+.+. .+...+.++..+++|+.|.+.|+++||+||+|++.- .+. .. .....+..++|.+.+.
T Consensus 2 ~~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a~ 81 (312)
T PRK12686 2 KEKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVAM 81 (312)
T ss_pred CCEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhhh
Confidence 678999999999987542 334566889999999999999999999999998542 211 11 1112455677776654
Q ss_pred HH-----HHHHHHHHHHHHHcCCCeeE-----eecccccc---------------------------------ccchH--
Q 024480 98 AT-----VMNAIFLQATMESIGIPTRV-----QTAFRMSE---------------------------------VAEPY-- 132 (267)
Q Consensus 98 ~~-----~~~~~l~~~~l~~~Gi~~~~-----~~~~~~~~---------------------------------~~~~~-- 132 (267)
.. .++.. +.+.|..+++.... +...+..| ..+.|
T Consensus 82 sqg~iGy~~~q~-l~~~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~rr 160 (312)
T PRK12686 82 SQGMIGYWLQNA-LNNELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRR 160 (312)
T ss_pred ccchhhHHHHHH-HHHHHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCeEE
Confidence 43 23332 34566666654221 22222111 00011
Q ss_pred ----------HHHH-HHHHhhCCCEEEEeCCCC------------C-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccC
Q 024480 133 ----------IRRR-AVRHLEKGRVVIFAAGTG------------N-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDD 188 (267)
Q Consensus 133 ----------~~~~-l~~ll~~g~iPIi~g~~g------------~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~ 188 (267)
++.+ +..+|++|+|||.+|..| . .++|+|.+|++||.+|+||+|+|+|||||||++
T Consensus 161 vV~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~ 240 (312)
T PRK12686 161 VVPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN 240 (312)
T ss_pred eeCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC
Confidence 2334 457899999988775311 1 267999999999999999999999999999985
Q ss_pred CCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhC--CCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 189 NPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQEN--NIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 189 dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~--Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|. +|++++|++++.+|+.++ ++|+| |++||..+.+. |.+++|++ ++.+.++|+|+ .||+|.
T Consensus 241 -~~-~p~ak~I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~~aL~G~-~GT~I~ 311 (312)
T PRK12686 241 -FN-KPNQQKLDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQAKEALAGN-AGTHIT 311 (312)
T ss_pred -CC-CCCCeECCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence 54 578999999999887654 46889 99999998865 56788887 68888999998 799995
|
|
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=244.86 Aligned_cols=216 Identities=22% Similarity=0.210 Sum_probs=165.8
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-cC-----------------
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-GN----------------- 83 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-~~----------------- 83 (267)
|++.|.||||+++. +.+.++++++.|.+..+.+ +++|+++ |.+.+.+..+ ..
T Consensus 10 M~~~V~KFGGtSv~-------~~e~i~~v~~iI~~~~~~~--~vVVVSA~~~~Td~L~~~~~~~~~~~~~~~~~l~~i~~ 80 (810)
T PRK09466 10 MGRQLHKFGGSSLA-------DAKCYRRVAGILAEYSQPD--DLVVVSAAGKTTNQLISWLKLSQTDRLSAHQVQQTLRR 80 (810)
T ss_pred ceeEEEEECccccC-------CHHHHHHHHHHHhhhccCC--EEEEEcCCCCCHHHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 45789999999998 6789999999888654433 5666667 4332221110 00
Q ss_pred ----------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecccccc--
Q 024480 84 ----------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE-- 127 (267)
Q Consensus 84 ----------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~-- 127 (267)
..++++..|.+..+++++++.+++.+|++.|+++.++++++.-.
T Consensus 81 ~h~~~~~~L~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~~~ 160 (810)
T PRK09466 81 YQQDLIEGLLPAEQARSLLSRLISDLERLAALLDGGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAE 160 (810)
T ss_pred HHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHhhccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHheecC
Confidence 00122334555568889999999999999999999887654311
Q ss_pred -ccchH-----HHHHHHHHhhC--CCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCC
Q 024480 128 -VAEPY-----IRRRAVRHLEK--GRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNP 190 (267)
Q Consensus 128 -~~~~~-----~~~~l~~ll~~--g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP 190 (267)
..... ..+.+.+.+.. +.+||++||.| ..+++||++|+.+|.+|+|+++.+||||||||++||
T Consensus 161 ~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDP 240 (810)
T PRK09466 161 RAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADP 240 (810)
T ss_pred CCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCc
Confidence 10111 12334455543 47999999844 246899999999999999999999999999999999
Q ss_pred CCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 191 RRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 191 ~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|.+|+|+++++|||+|+.++ |...+|+++..+|.+++||++|.|.++|+ ..||+|..
T Consensus 241 r~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~Ipi~V~ntf~p~---------~~GT~I~~ 300 (810)
T PRK09466 241 RKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPE---------QGSTRIER 300 (810)
T ss_pred ccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCCeEEEecCCCCC---------CCceEEec
Confidence 99999999999999999875 89999999999999999999999999886 67999975
|
|
| >PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=213.42 Aligned_cols=227 Identities=24% Similarity=0.355 Sum_probs=162.8
Q ss_pred cceEEEEeccccccCCCC-CCCC--HHHHHHHHHHHHHHHHCCCeEEEEECCch----HHhhhHHhcCCCCCCChHHHH-
Q 024480 23 WQRVLLKVSGEALAGDHT-QNID--PKITMAIAREVASVTRLGIEVAIVVGGGN----IFRGASAAGNSGLDRSSADYI- 94 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~-~~~~--~~~l~~l~~~I~~l~~~g~~vViVhGgG~----~~~~~~~~~~~~l~~~~~~~~- 94 (267)
|+++||++||++|...+. .+.. .+.++..+++|+++.++|++++|+||+|+ +..+.......+.+..+.|.+
T Consensus 2 ~~~ivvalgGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~ 81 (313)
T PRK12454 2 KKRIVIALGGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAG 81 (313)
T ss_pred CceEEEEeChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhh
Confidence 479999999999987543 2222 35899999999999999999999999998 333333332113444455543
Q ss_pred ----HHHHHHHHHHHHHHHHHHcCCCeeEeecccc-----cc--ccc-------------------------------hH
Q 024480 95 ----GMLATVMNAIFLQATMESIGIPTRVQTAFRM-----SE--VAE-------------------------------PY 132 (267)
Q Consensus 95 ----~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~-----~~--~~~-------------------------------~~ 132 (267)
++++..++.. +.+.|..+|++....+.++. .| |.. .|
T Consensus 82 a~sqG~igy~l~~a-l~~~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~g~ 160 (313)
T PRK12454 82 AMTQGWIGYMIQQA-LRNELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGW 160 (313)
T ss_pred hhhhHHHHHHHHHH-HHHHHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCCce
Confidence 4455555443 46788888986544443332 11 000 00
Q ss_pred ------------HHHH-HHHHhhCCCEEEEeCCCCCC-------------CCCcHHHHHHHHHhcCCcEEEEeeccCccc
Q 024480 133 ------------IRRR-AVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVY 186 (267)
Q Consensus 133 ------------~~~~-l~~ll~~g~iPIi~g~~g~~-------------~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy 186 (267)
++.+ +..+|++|.|||++|..|.+ ++|+|.+|+++|.+|+||+|+|+|||||||
T Consensus 161 RrvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy 240 (313)
T PRK12454 161 RRVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVY 240 (313)
T ss_pred EEEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceee
Confidence 1223 45789999999999754322 357899999999999999999999999999
Q ss_pred cCCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhCC-CcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 187 DDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 187 ~~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~G-i~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
++ |. +|++++|++++.+|+.++ .+|+| |+++|..+.+.| .+++|++ ++.+.++|+|+ .||+|.+
T Consensus 241 ~~-~~-~p~~~~i~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~-~GT~I~~ 313 (313)
T PRK12454 241 LN-YG-KPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGK-TGTRIIP 313 (313)
T ss_pred CC-CC-CCCCeEccccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence 86 32 578999999999887653 36778 889997766665 5799985 67888999998 7999963
|
|
| >cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-28 Score=213.31 Aligned_cols=220 Identities=21% Similarity=0.309 Sum_probs=159.0
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCCChH-
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSA- 91 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~~~~- 91 (267)
+.++.+++|||+||+++.++ .+++++++|+.+.+.|+++|||||||++... +.+.+. .|++.++.
T Consensus 14 ~~~~~~~~VIKlGG~ai~~~--------~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~RvT~~~ 85 (280)
T cd04237 14 NAHRGKTFVIAFGGEAVAHP--------NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAA 85 (280)
T ss_pred HHhCCCEEEEEEChHHhcCc--------hHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcCcCCHH
Confidence 34567899999999999742 4578999999999999999999999987654 333332 24433332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHcCCCeeEee-----ccc-----cc--------cc---cc-hHHHHH-HHHHhhCCCE
Q 024480 92 --DYIGMLATVMNAIFLQATMESIGIPTRVQT-----AFR-----MS--------EV---AE-PYIRRR-AVRHLEKGRV 146 (267)
Q Consensus 92 --~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~-----~~~-----~~--------~~---~~-~~~~~~-l~~ll~~g~i 146 (267)
+...+....++..+ .+.|+ .|+++.+++ ..+ .. ++ ++ ..++.+ +..+|++|++
T Consensus 86 ~l~~~~~~~g~v~~~l-~~~l~-~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~i 163 (280)
T cd04237 86 ALECVKEAAGAVRLEI-EALLS-MGLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSI 163 (280)
T ss_pred HHHHHHHHHHHHHHHH-HHHHH-hhccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCE
Confidence 22333334456554 45665 366654221 111 00 00 00 012333 5578999999
Q ss_pred EEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---C---CCcc
Q 024480 147 VIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D---LSVM 215 (267)
Q Consensus 147 PIi~g~----~g~~-~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g---~g~m 215 (267)
||+++. .|.. ++++|.+|+.||.+|+|++|+|+|||||||++ +++++++++.+|+.++ + +++|
T Consensus 164 pv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM 237 (280)
T cd04237 164 VLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDT 237 (280)
T ss_pred EEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCH
Confidence 999973 2333 47999999999999999999999999999974 3689999998887764 2 6889
Q ss_pred --hHHHHHHHHhCCC-cEEEEcCCCCCcHH-HHhcCCCcceEE
Q 024480 216 --DMTAITLCQENNI-PVVVFNLNQPGNIA-KAIQGERVGTLI 254 (267)
Q Consensus 216 --k~~aa~~a~~~Gi-~v~I~ng~~~~~i~-~~l~g~~~GT~I 254 (267)
|+++|..+.+.|+ +++|++++.|+.+. +++..++.||+|
T Consensus 238 ~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 238 ARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 8999999999999 59999999999887 577788889975
|
Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). |
| >TIGR00761 argB acetylglutamate kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=209.63 Aligned_cols=193 Identities=22% Similarity=0.278 Sum_probs=143.8
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhH-HhcC-----CCCCCChH---HHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-----SGLDRSSA---DYIG 95 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~-~~~~-----~~l~~~~~---~~~~ 95 (267)
++||||||+++++ . +.+++++|+.+++.|.++|||||+|++.+.+. .++. .+++.... +...
T Consensus 1 ~~ViK~GGs~l~~-------~--~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~ 71 (231)
T TIGR00761 1 TIVIKIGGAAISD-------L--LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVE 71 (231)
T ss_pred CEEEEEChHHHhc-------c--HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHH
Confidence 5899999999984 1 78999999999999999999999998776543 2221 12222221 2222
Q ss_pred H-HHHHHHHHHHHHHHHHcCCCeeEeeccccccc-----c---ch------HHH-HHHHHHhhCCCEEEEeCC----CC-
Q 024480 96 M-LATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----A---EP------YIR-RRAVRHLEKGRVVIFAAG----TG- 154 (267)
Q Consensus 96 ~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-----~---~~------~~~-~~l~~ll~~g~iPIi~g~----~g- 154 (267)
+ +++.+|..++ ++|.++|+++.++++.+...+ . .+ .++ +.+.+++++|+|||++|+ .|
T Consensus 72 ~~~~g~~~~~i~-~~L~~~G~~a~~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~~~~~~g~ 150 (231)
T TIGR00761 72 MVLIGQVNKELV-ALLNKHGINAIGLTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSLALTAEGQ 150 (231)
T ss_pred HHHhcchHHHHH-HHHHhCCCCcccccCCCCCEEEEEECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCCccCCCCc
Confidence 2 3446787666 589999999987765542111 0 00 123 345688999999999995 12
Q ss_pred CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---C--CCcc--hHHHHHHHHhCC
Q 024480 155 NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D--LSVM--DMTAITLCQENN 227 (267)
Q Consensus 155 ~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g--~g~m--k~~aa~~a~~~G 227 (267)
..++++|++|+.+|.+|+|++|+|||||||||++||+ ++|++|+++|+.++ + +++| |+++|..+.+.|
T Consensus 151 ~~~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~g 225 (231)
T TIGR00761 151 ALNVNADTAAGALAAALGAEKLVLLTDVPGILNGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGG 225 (231)
T ss_pred EEEeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcC
Confidence 2358999999999999999999999999999998773 69999999887664 3 7888 899999999999
Q ss_pred Cc-EEE
Q 024480 228 IP-VVV 232 (267)
Q Consensus 228 i~-v~I 232 (267)
++ ++|
T Consensus 226 v~~v~i 231 (231)
T TIGR00761 226 VKSVHI 231 (231)
T ss_pred CCEEEC
Confidence 97 554
|
This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model. |
| >TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=225.96 Aligned_cols=224 Identities=17% Similarity=0.217 Sum_probs=161.7
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCCChH-
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSA- 91 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~~~~- 91 (267)
+.++.+++|||+||++++++ .+..++++|+.|...|.++|||||||+..+. +...+. .|++.+..
T Consensus 13 ~~~~~~~~ViK~GG~~~~~~--------~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~ 84 (429)
T TIGR01890 13 NAHRGKTFVVGLGGELVEGG--------NLGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRVTDEA 84 (429)
T ss_pred HHhCCCEEEEEEChhhccCc--------cHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHH
Confidence 45788999999999999753 2358999999999999999999999986544 333332 34544433
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHcCCCeeE-----eeccccc-------------c---ccc-hHHHHH-HHHHhhCCCE
Q 024480 92 --DYIGMLATVMNAIFLQATMESIGIPTRV-----QTAFRMS-------------E---VAE-PYIRRR-AVRHLEKGRV 146 (267)
Q Consensus 92 --~~~~~~~~~~~~~l~~~~l~~~Gi~~~~-----~~~~~~~-------------~---~~~-~~~~~~-l~~ll~~g~i 146 (267)
+...+++..+|..+. +.|++. +++.+ ++..+.. + .++ ..++.+ +..+|+.|+|
T Consensus 85 ~l~~~~~~~g~vn~~l~-~~l~~~-~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~i 162 (429)
T TIGR01890 85 SLEQAQQAAGTLRLAIE-ARLSMS-LSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSI 162 (429)
T ss_pred HHHHHHHHhChHHHHHH-HHHHhc-CCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCe
Confidence 334445556777655 566655 33222 1111110 1 111 013444 4578999999
Q ss_pred EEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCc-c--
Q 024480 147 VIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSV-M-- 215 (267)
Q Consensus 147 PIi~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~-m-- 215 (267)
||+++. .|. .++|+|.+|+.||.+|+|++|+|+|||||||++ ++++|++|+.+|+.++ ..++ |
T Consensus 163 pvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~ 236 (429)
T TIGR01890 163 VLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDP------DGTLAAELSPQEVESLAERLGSETTRR 236 (429)
T ss_pred EEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCCcHH
Confidence 999983 232 458999999999999999999999999999963 2679999998877654 1233 3
Q ss_pred hHHHHHHHHhCCC-cEEEEcCCCCCcHHH-HhcCCCcceEEecCC
Q 024480 216 DMTAITLCQENNI-PVVVFNLNQPGNIAK-AIQGERVGTLIGGTW 258 (267)
Q Consensus 216 k~~aa~~a~~~Gi-~v~I~ng~~~~~i~~-~l~g~~~GT~I~~~~ 258 (267)
|++++..|.+.|+ +++|+|++.|+++.. ++..++.||+|..+.
T Consensus 237 kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~ 281 (429)
T TIGR01890 237 LLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEA 281 (429)
T ss_pred HHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccc
Confidence 8999999999998 599999999999875 567788899998754
|
This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate. |
| >PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=241.69 Aligned_cols=219 Identities=23% Similarity=0.263 Sum_probs=167.1
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-c------------------
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-G------------------ 82 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-~------------------ 82 (267)
|+++|.||||+++. +.+.++++++.|++..+++.++|+|+|+ |.+.+.+..+ .
T Consensus 7 ~~~~V~KFGGtSv~-------~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~ 79 (861)
T PRK08961 7 DRWVVLKFGGTSVS-------RRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGAGDSASRVAAIRQRH 79 (861)
T ss_pred CCcEEEEECccccC-------CHHHHHHHHHHHHhhcccCCCEEEEEeCCCCchHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 57889999999998 5678999999998766678888888888 4333222111 0
Q ss_pred -----CCC--------------------------CCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecccccccc--
Q 024480 83 -----NSG--------------------------LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-- 129 (267)
Q Consensus 83 -----~~~--------------------------l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-- 129 (267)
..+ ++++..+.+...++++++.+++.+|++.|+++.++++.+.....
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~ 159 (861)
T PRK08961 80 RELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQ 159 (861)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCc
Confidence 000 11222233335778899999999999999999988765431111
Q ss_pred ------chH--------HHHHHH-HHhhCC-CEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCc
Q 024480 130 ------EPY--------IRRRAV-RHLEKG-RVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDG 184 (267)
Q Consensus 130 ------~~~--------~~~~l~-~ll~~g-~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdG 184 (267)
.++ .+..+. .+++.+ .|||++||.| ..+++||++|+.+|.+|+|++|++||||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~G 239 (861)
T PRK08961 160 PNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPG 239 (861)
T ss_pred cccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 011 122233 344444 5999999844 247899999999999999999999999999
Q ss_pred cccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 185 VYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 185 Vy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
||++||+.+|+++++++++++|+.++ |...+|++|+++|.++||+++|.|+++|+ ..||+|..+
T Consensus 240 v~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~~---------~~gT~I~~~ 306 (861)
T PRK08961 240 MFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPD---------LSGTSIDGD 306 (861)
T ss_pred cccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCCC---------CCccEEeCC
Confidence 99999999999999999999998875 67788999999999999999999999885 579999754
|
|
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=237.08 Aligned_cols=216 Identities=25% Similarity=0.293 Sum_probs=165.9
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhc----C----------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAG----N---------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~----~---------------- 83 (267)
|.|.||||+++. +.+.++++++.|.+..+. .++|+|+|+ |.+.+.+..+- .
T Consensus 1 m~V~KFGGtSv~-------~~~~i~~v~~iI~~~~~~-~~~vVVVSA~~~vTd~L~~~~~~~~~~~~~~~~~~~~~~~~h 72 (819)
T PRK09436 1 MRVLKFGGTSVA-------NAERFLRVADIIESNARQ-EQVAVVLSAPAKVTNHLVAMIEKAAKGDDAYPEILDAERIFH 72 (819)
T ss_pred CEEEEeCccccC-------CHHHHHHHHHHHHhhccc-CCEEEEEcCCcCcHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 469999999998 678999999999876544 577888878 43322221100 0
Q ss_pred ---------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccc
Q 024480 84 ---------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR 124 (267)
Q Consensus 84 ---------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~ 124 (267)
..++++..|.+..+++++++.+++.+|++.|+++.++++.+
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~ 152 (819)
T PRK09436 73 ELLDGLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPRE 152 (819)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHH
Confidence 00112223445567889999999999999999999887644
Q ss_pred ccc----ccc-----hHHHHHHHHHh-hCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 024480 125 MSE----VAE-----PYIRRRAVRHL-EKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGV 185 (267)
Q Consensus 125 ~~~----~~~-----~~~~~~l~~ll-~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGV 185 (267)
.-. +.+ ....+.+.+++ +.+.|||++||.+ ..+++||++|+++|.+|+|+.|++|||||||
T Consensus 153 ~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGv 232 (819)
T PRK09436 153 LLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGV 232 (819)
T ss_pred eEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCce
Confidence 311 111 11223344444 4688999999843 1467899999999999999999999999999
Q ss_pred ccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 186 YDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 186 y~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
|++||+.+|+|++|++++|+|+.++ |+..+|++|+.+|.++|||++|.|+++|+ ..||+|...
T Consensus 233 yt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~---------~~GT~I~~~ 298 (819)
T PRK09436 233 YTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQ---------APGTLIGAE 298 (819)
T ss_pred ECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCceEEEccCCCCC---------CCceEEEec
Confidence 9999999999999999999998875 88889999999999999999999999887 679999764
|
|
| >PRK12352 putative carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=206.85 Aligned_cols=226 Identities=18% Similarity=0.236 Sum_probs=158.6
Q ss_pred ceEEEEeccccccCCCC-CCC--CHHHHHHHHHHHHHHHHCCCeEEEEECCchHH-hhhHHhcC----CCCCCChHHHHH
Q 024480 24 QRVLLKVSGEALAGDHT-QNI--DPKITMAIAREVASVTRLGIEVAIVVGGGNIF-RGASAAGN----SGLDRSSADYIG 95 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~-~~~--~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~-~~~~~~~~----~~l~~~~~~~~~ 95 (267)
|++|||+||+++.+++. .++ ..+.+..++++|+.|+..|+++|||||+|++. ..+.+.+. .|++..+.+...
T Consensus 3 k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~~g~rvt~~~~~v 82 (316)
T PRK12352 3 ELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANCV 82 (316)
T ss_pred cEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCcccccCCCCCCCHHHHH
Confidence 69999999999976431 222 33688999999999999999999999999854 33333221 245555555322
Q ss_pred -----HHHHHHHHHHHHHHHHHcCCCee-------Eeecccc---------c----------------cc------cch-
Q 024480 96 -----MLATVMNAIFLQATMESIGIPTR-------VQTAFRM---------S----------------EV------AEP- 131 (267)
Q Consensus 96 -----~~~~~~~~~l~~~~l~~~Gi~~~-------~~~~~~~---------~----------------~~------~~~- 131 (267)
.++..+++.|. +.|..+|..+. .++..+. + +. .+.
T Consensus 83 ~~~~g~i~~~i~~~L~-~~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~ 161 (316)
T PRK12352 83 ADTQGGIGYLIQQALN-NRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGY 161 (316)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCe
Confidence 23345666544 67777774421 1121110 0 00 000
Q ss_pred -----------HHHHH-HHHHhhCCCE---------EEEeCCCCC-----CCCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 024480 132 -----------YIRRR-AVRHLEKGRV---------VIFAAGTGN-----PFFTTDTAAALRCAEINAEVVLKATNVDGV 185 (267)
Q Consensus 132 -----------~~~~~-l~~ll~~g~i---------PIi~g~~g~-----~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGV 185 (267)
.++.+ +..+|++|+| ||+.+..+. .++|+|.+|+.+|.+|+||+|+|+|||+||
T Consensus 162 rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV 241 (316)
T PRK12352 162 RRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKV 241 (316)
T ss_pred EEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhh
Confidence 12334 4578999999 444432221 237899999999999999999999999999
Q ss_pred ccCCCCCCCCcccccccCHHHHhhc---C---CCcc--hHHHHHHHHhCCC-cEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 186 YDDNPRRNPNARLLDTLTYQEVTSK---D---LSVM--DMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 186 y~~dP~~~~~a~li~~Is~~e~~~l---g---~g~m--k~~aa~~a~~~Gi-~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|.++| +|++++|++++..|+.++ | .++| |+++|..+++.|+ +++|++ ++.+.++|+|+ .||+|..
T Consensus 242 ~~d~~--~~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 242 CIHFG--KPQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHIIK 315 (316)
T ss_pred ccCCC--CCCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHHHHHHcCC-CCeEEEe
Confidence 98765 367789999999987764 2 4678 8999988888888 599996 77899999998 8999964
|
|
| >PRK05279 N-acetylglutamate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-27 Score=220.19 Aligned_cols=223 Identities=20% Similarity=0.293 Sum_probs=160.4
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCCChH-
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSA- 91 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~~~~- 91 (267)
+.++.+++|||+||+++.++ .+.+++++|+.+.+.|.++|||||||+.... +.+.+. .|++.+..
T Consensus 21 ~~~~~~~~VIk~GG~~l~~~--------~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~ 92 (441)
T PRK05279 21 NAHRGKTFVIMLGGEAIAHG--------NFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKGLRVTDAA 92 (441)
T ss_pred HHhCCCEEEEEECchhccCh--------hHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCCcccCCHH
Confidence 34667899999999999753 3578999999999999999999999986544 333332 34433332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHcCCCeeEeec-----cccc-------------c---ccc-hHHHHH-HHHHhhCCCE
Q 024480 92 --DYIGMLATVMNAIFLQATMESIGIPTRVQTA-----FRMS-------------E---VAE-PYIRRR-AVRHLEKGRV 146 (267)
Q Consensus 92 --~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~-----~~~~-------------~---~~~-~~~~~~-l~~ll~~g~i 146 (267)
+...+....+|..+ .+.|+ .|+++.++.+ .+.. + .++ ..++.+ +..+|++|+|
T Consensus 93 ~l~~~~~~~g~v~~~l-~~~l~-~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~i 170 (441)
T PRK05279 93 ALECVKQAAGELRLDI-EARLS-MGLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAI 170 (441)
T ss_pred HHHHHHHHHHHHHHHH-HHHHh-ccCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCe
Confidence 22333333456654 45665 5877654221 1100 0 010 012333 4578999999
Q ss_pred EEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc------C--CC
Q 024480 147 VIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------D--LS 213 (267)
Q Consensus 147 PIi~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l------g--~g 213 (267)
||+++. .|. .++|+|.+|+.||.+|+|++|+|+|||||||++ ++++|++++.+|+.++ + +|
T Consensus 171 pV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~g 244 (441)
T PRK05279 171 VLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNS 244 (441)
T ss_pred EEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCc
Confidence 999873 222 357999999999999999999999999999963 3689999998877643 1 57
Q ss_pred cc--hHHHHHHHHhCCC-cEEEEcCCCCCcHHHHh-cCCCcceEEecC
Q 024480 214 VM--DMTAITLCQENNI-PVVVFNLNQPGNIAKAI-QGERVGTLIGGT 257 (267)
Q Consensus 214 ~m--k~~aa~~a~~~Gi-~v~I~ng~~~~~i~~~l-~g~~~GT~I~~~ 257 (267)
+| |++++..+.++|+ +++|++++.|+++...| ..++.||+|..+
T Consensus 245 gM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~ 292 (441)
T PRK05279 245 GTARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME 292 (441)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence 88 8999999999999 59999999999998655 445689999875
|
|
| >PRK12354 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=203.86 Aligned_cols=227 Identities=23% Similarity=0.285 Sum_probs=152.8
Q ss_pred eEEEEeccccccCCCC-CCCC--HHHHHHHHHHHHHHHHCCCeEEEEECCchH-HhhhHHhcCCC-CCCChHHHHHH---
Q 024480 25 RVLLKVSGEALAGDHT-QNID--PKITMAIAREVASVTRLGIEVAIVVGGGNI-FRGASAAGNSG-LDRSSADYIGM--- 96 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~-~~~~--~~~l~~l~~~I~~l~~~g~~vViVhGgG~~-~~~~~~~~~~~-l~~~~~~~~~~--- 96 (267)
++|||+||++|.+++. .+.. .+.+++.+++|+++.+ |+++||+||+|++ +..+.....+. .+..+.+.+.+
T Consensus 2 ~iVialGGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~pl~~~~a~sq 80 (307)
T PRK12354 2 RIVVALGGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYKDVTPYPLDVLGAETE 80 (307)
T ss_pred eEEEEeccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhcCCCCCCcchhccccc
Confidence 6899999999998763 4555 4589999999999988 8999999999996 53322221111 13344554332
Q ss_pred --HHHHHHHHHHHHHHHHcCCCeeE-eecccccc---------c-----------------------cc----------h
Q 024480 97 --LATVMNAIFLQATMESIGIPTRV-QTAFRMSE---------V-----------------------AE----------P 131 (267)
Q Consensus 97 --~~~~~~~~l~~~~l~~~Gi~~~~-~~~~~~~~---------~-----------------------~~----------~ 131 (267)
.+..++.. +.+.|....+.+.. +..++.+| + .+ |
T Consensus 81 g~iGy~l~q~-l~~~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg~g~rrVv~SP~P 159 (307)
T PRK12354 81 GMIGYMLEQE-LGNLLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDGDYFRRVVPSPRP 159 (307)
T ss_pred chHHHHHHHH-HHHHhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecCCceEEEecCCCC
Confidence 22223322 23445433333221 22222111 0 00 0
Q ss_pred --HHHHH-HHHHhhCCCEEEEeC---------CCC-----CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCC
Q 024480 132 --YIRRR-AVRHLEKGRVVIFAA---------GTG-----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP 194 (267)
Q Consensus 132 --~~~~~-l~~ll~~g~iPIi~g---------~~g-----~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~ 194 (267)
.++.+ +..+|++|+|||.+| +.+ ..++|+|.+|+.||.+|+||+|+|+|||||||++++ .|
T Consensus 160 ~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p 237 (307)
T PRK12354 160 KRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KP 237 (307)
T ss_pred cceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CC
Confidence 01223 457899999755543 212 125799999999999999999999999999999753 57
Q ss_pred CcccccccCHHHHhhc--CCCcc--hHHHHHHHHhC-CCcEEEEcCCCCCcHHHHhcCCCcceEEecCCC
Q 024480 195 NARLLDTLTYQEVTSK--DLSVM--DMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 259 (267)
Q Consensus 195 ~a~li~~Is~~e~~~l--g~g~m--k~~aa~~a~~~-Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~~ 259 (267)
++++|++++.+|+.++ .+|+| |++||..+++. +.+++|.+ ++.+.++|.|+ .||+|.+...
T Consensus 238 ~~k~i~~it~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~~---~~~l~~al~G~-~GT~I~~~~~ 303 (307)
T PRK12354 238 TQRAIAQATPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIGS---LEDIQAILAGE-AGTRISPETA 303 (307)
T ss_pred CCeECCCCCHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEECC---HHHHHHHHCCC-CceEEecCCC
Confidence 8899999999988765 57888 99999776665 44688853 56788999987 7999987544
|
|
| >cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=203.53 Aligned_cols=208 Identities=10% Similarity=0.110 Sum_probs=155.2
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMN 102 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 102 (267)
.+.+|||+||+++. +.+.+..++++|+.|++.|.++|||||||+.....-. +......-..+. ..|
T Consensus 35 ~~f~VIK~GG~~~~-------~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~------~~~~~~~~~v~~-~~n 100 (271)
T cd04236 35 PAFAVLEVDHSVFR-------SLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS------DLELQAARSRLV-KDC 100 (271)
T ss_pred CCEEEEEEChhhhc-------CchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc------CCcchheehhHH-HHH
Confidence 57899999999997 3457889999999999999999999999986433211 111111111222 456
Q ss_pred HHHHHHHHHHcCCCeeEeecccc----------ccccc-hHHHHH-HHHHhhCCCEEEEeCC----CCC-CCCCcHHHHH
Q 024480 103 AIFLQATMESIGIPTRVQTAFRM----------SEVAE-PYIRRR-AVRHLEKGRVVIFAAG----TGN-PFFTTDTAAA 165 (267)
Q Consensus 103 ~~l~~~~l~~~Gi~~~~~~~~~~----------~~~~~-~~~~~~-l~~ll~~g~iPIi~g~----~g~-~~~~sD~~Aa 165 (267)
..++ +.|+++|+++.++++... ...++ ..++.+ +..+|++|+|||+++. .|. .++++|.+|+
T Consensus 101 ~~Lv-~~L~~~G~~A~gl~g~~~~i~a~~~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~ 179 (271)
T cd04236 101 KTLV-EALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTT 179 (271)
T ss_pred HHHH-HHHHhCCCCeeeecCccceEEEEEcccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHH
Confidence 6654 688999999988765410 00010 113444 5578999999999984 233 3589999999
Q ss_pred HHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCH-HHHhhc---C--CCcc-----hHHHHHHHHhCCCcEEEEc
Q 024480 166 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY-QEVTSK---D--LSVM-----DMTAITLCQENNIPVVVFN 234 (267)
Q Consensus 166 ~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~-~e~~~l---g--~g~m-----k~~aa~~a~~~Gi~v~I~n 234 (267)
.+|.+|+|++|+|+||++|||++ ++++|++++. .|+.++ | +++| |++++..+...|+.|+|++
T Consensus 180 ~lA~aL~A~KLIfltd~~GV~~~------~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~ 253 (271)
T cd04236 180 AIAKALQPIKVIFLNRSGGLRDQ------KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS 253 (271)
T ss_pred HHHHHcCCCEEEEEeCCcceECC------CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC
Confidence 99999999999999999999974 2579999995 777654 3 5667 7788899999999999997
Q ss_pred CCCCCcHH-HHhcCCCcceEE
Q 024480 235 LNQPGNIA-KAIQGERVGTLI 254 (267)
Q Consensus 235 g~~~~~i~-~~l~g~~~GT~I 254 (267)
|+.+. ++|..++.||.|
T Consensus 254 ---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 254 ---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred ---hHHHHHHHhccCCCCCcC
Confidence 56554 789888899975
|
Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF). |
| >cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP) | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=199.59 Aligned_cols=210 Identities=16% Similarity=0.211 Sum_probs=150.2
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHH-hcC-----CCCCCChH---HHHHH
Q 024480 26 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA-AGN-----SGLDRSSA---DYIGM 96 (267)
Q Consensus 26 iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~-~~~-----~~l~~~~~---~~~~~ 96 (267)
.|||+||+.+++ .+.+++++|+.|++.|.++|||||||++.+.+.+ .+. .|++.+.. +...+
T Consensus 1 ~ViKiGG~~~~~---------~l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~ 71 (248)
T cd04252 1 AVIKVGGAIIED---------DLDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARK 71 (248)
T ss_pred CEEEEChhhhhc---------cHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHH
Confidence 389999999873 2688999999999999999999999998766533 221 23322222 23333
Q ss_pred HHHHHHHHHHHHHHHHcCCCeeEeecccc-------cccc---c-hHHHHH-HHHHhhCCCEEEEeCC----CCC-CCCC
Q 024480 97 LATVMNAIFLQATMESIGIPTRVQTAFRM-------SEVA---E-PYIRRR-AVRHLEKGRVVIFAAG----TGN-PFFT 159 (267)
Q Consensus 97 ~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~-------~~~~---~-~~~~~~-l~~ll~~g~iPIi~g~----~g~-~~~~ 159 (267)
....+|..++ +.|.++|+++.++++... .++. + ..++.+ +..+|+.|+|||++|. .|. .++|
T Consensus 72 al~~vn~~iv-~~l~~~g~~a~~l~~~~~~a~~~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvn 150 (248)
T cd04252 72 VFLEENLKLV-EALERNGARARPITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVN 150 (248)
T ss_pred HHHHHHHHHH-HHHHhCCCCcccccCceEEEEECcCccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEEC
Confidence 3336777765 678889999887543211 0111 1 012333 5579999999999984 232 3589
Q ss_pred cHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHH-HHhhc---C--CCcc--hHHHHHHHHhC--CC-
Q 024480 160 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ-EVTSK---D--LSVM--DMTAITLCQEN--NI- 228 (267)
Q Consensus 160 sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~-e~~~l---g--~g~m--k~~aa~~a~~~--Gi- 228 (267)
+|.+|+.+|.+|+|++|+|+|||||||++ ++++|++++.. +..++ + +++| |++++..+.+. ++
T Consensus 151 aD~~A~~lA~aL~a~kli~ltdv~GV~~~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~ 224 (248)
T cd04252 151 ADVAAGELARVLEPLKIVFLNETGGLLDG------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSS 224 (248)
T ss_pred HHHHHHHHHHHcCCCeEEEEECCcccCCC------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCce
Confidence 99999999999999999999999999974 25799999864 44333 2 6788 88988888876 44
Q ss_pred cEEEEcCCCCCcHH-HHhcCCCcceEE
Q 024480 229 PVVVFNLNQPGNIA-KAIQGERVGTLI 254 (267)
Q Consensus 229 ~v~I~ng~~~~~i~-~~l~g~~~GT~I 254 (267)
.++|++ ++++. +++..++.||+|
T Consensus 225 ~v~i~~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 225 SVSITS---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred EEEEEC---CchHHHHHhcCCCCCccC
Confidence 488887 57776 567777789975
|
The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th |
| >cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=196.59 Aligned_cols=150 Identities=14% Similarity=0.140 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHh----hCCCEEEEeCCCC--------CCCCCcHHH
Q 024480 96 MLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL----EKGRVVIFAAGTG--------NPFFTTDTA 163 (267)
Q Consensus 96 ~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll----~~g~iPIi~g~~g--------~~~~~sD~~ 163 (267)
.+++++++.+++.+|++.|+++..+++..+........++.+.+.+ ..+.|||++||.+ ..+++||++
T Consensus 138 S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itTLGRGGSDyT 217 (304)
T cd04248 138 SLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSGDMTLDERISEAFRDIDPRDELPIVTGYAKCAEGLMREFDRGYSEMT 217 (304)
T ss_pred hhCHHHHHHHHHHHHHHCCCCeEEECcccccccCCCCcHHHHHHHHHhhccCCcEEEeCCccCCCCCCEEEcCCCcHHHH
Confidence 4556788888999999999999875543332111000112232222 3578999999832 246899999
Q ss_pred HHHHHHhcCCcEEEEeeccCccccCCCCCC--CCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCC
Q 024480 164 AALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQP 238 (267)
Q Consensus 164 Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~--~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~ 238 (267)
|+.+|.+|+|+++.+||||+ ||+.||+.+ |+++.|+++||+|+.++ |...+|++|++++.+++||++|.|.++|
T Consensus 218 As~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IPi~Vkntf~P 296 (304)
T cd04248 218 FSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEP 296 (304)
T ss_pred HHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCeEEEecCCCC
Confidence 99999999999999999996 999999999 58999999999999876 8889999999999999999999999988
Q ss_pred CcHHHHhcCCCcceEEe
Q 024480 239 GNIAKAIQGERVGTLIG 255 (267)
Q Consensus 239 ~~i~~~l~g~~~GT~I~ 255 (267)
+ ..||+|+
T Consensus 297 ~---------~~GTlIt 304 (304)
T cd04248 297 D---------HPGTLIT 304 (304)
T ss_pred C---------CCCceeC
Confidence 7 6799984
|
Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. |
| >PRK09411 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-25 Score=193.03 Aligned_cols=223 Identities=22% Similarity=0.268 Sum_probs=159.2
Q ss_pred ceEEEEeccccccCCCC-CCCCH--HHHHHHHHHHHHHHHCCCeEEEEECCchHHhh----hHHhcCCCCCCChHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHT-QNIDP--KITMAIAREVASVTRLGIEVAIVVGGGNIFRG----ASAAGNSGLDRSSADYIGM 96 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~-~~~~~--~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~----~~~~~~~~l~~~~~~~~~~ 96 (267)
+++||.+||++|...+. .+... ..++..++.|+.+.++ |++||+||.|++.-. ..... ..+..++|.+.+
T Consensus 2 ~~iVvAlGGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~~--~~~~~pld~~~a 78 (297)
T PRK09411 2 KTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAWK--EVEPYPLDVLVA 78 (297)
T ss_pred CeEEEEcCchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhhc--CCCCCCchhhhh
Confidence 68999999999976542 33333 4888999999999988 999999999985411 11111 235567787776
Q ss_pred HHHHHHHHHHHHHHHHcCCCeeEee-----cccccc--c------------------------------cchH-------
Q 024480 97 LATVMNAIFLQATMESIGIPTRVQT-----AFRMSE--V------------------------------AEPY------- 132 (267)
Q Consensus 97 ~~~~~~~~l~~~~l~~~Gi~~~~~~-----~~~~~~--~------------------------------~~~~------- 132 (267)
...-+--++++++|...++.....+ ..+..| | ++.|
T Consensus 79 ~sqG~iGy~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP 158 (297)
T PRK09411 79 ESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASP 158 (297)
T ss_pred hcccHHHHHHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCC
Confidence 6554455567788877775432222 222111 0 0001
Q ss_pred -----HHHH-HHHHhhCCCEEEEeCC---------CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCc
Q 024480 133 -----IRRR-AVRHLEKGRVVIFAAG---------TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA 196 (267)
Q Consensus 133 -----~~~~-l~~ll~~g~iPIi~g~---------~g-~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a 196 (267)
++.+ +..++++|+|||.+|. .+ ..++|+|.+|+.||.+|+||+|+|+|||||||+++ .+|++
T Consensus 159 ~P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~--~~p~~ 236 (297)
T PRK09411 159 QPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENW--GTPQQ 236 (297)
T ss_pred CCcceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCC--CCCCC
Confidence 1233 4578999999777642 12 23689999999999999999999999999999864 36788
Q ss_pred ccccccCHHHHhhc--CCCcc--hHHHHHHHHh-CCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 197 RLLDTLTYQEVTSK--DLSVM--DMTAITLCQE-NNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 197 ~li~~Is~~e~~~l--g~g~m--k~~aa~~a~~-~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
++|++++.+|+.++ .+|+| |+++|..+.+ .|.+++|.+ ++.+.+++.|+ .||+|.
T Consensus 237 ~~I~~it~~e~~~~~~~~GgM~pKVeAA~~~v~~~g~~a~I~~---l~~~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 237 RAIRHATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGA---LSRIEETLAGE-AGTCIS 296 (297)
T ss_pred cCCCCcCHHHHHHhccCCCCcHHHHHHHHHHHHhCCCeEEECC---hhHHHHHHCCC-CCeEEe
Confidence 99999999998765 46778 9999866555 466788865 67788999998 799985
|
|
| >PRK09181 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-25 Score=208.41 Aligned_cols=156 Identities=11% Similarity=0.112 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhh----CCCEEEEeCCCC--------CCCCC
Q 024480 92 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE----KGRVVIFAAGTG--------NPFFT 159 (267)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~----~g~iPIi~g~~g--------~~~~~ 159 (267)
|.+...++++++.+++.+|++.|+++.++++.....-......+++.+.++ .+.|||++||.+ ..+++
T Consensus 140 D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTLGRGG 219 (475)
T PRK09181 140 EMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDDDDPLTLDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTFDRGY 219 (475)
T ss_pred HHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccCCcccchHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEecCCCh
Confidence 334446778999999999999999998755422211001112334444444 578999999842 24689
Q ss_pred cHHHHHHHHHhcCCcEEEEeeccCccccCCCCCC--CCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEc
Q 024480 160 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFN 234 (267)
Q Consensus 160 sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~--~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~n 234 (267)
||++|+.+|.+|+|+++.+||||+ ||++|||.+ |+|++|++|||+|+.|+ |...+|+++..+|.+++||++|.|
T Consensus 220 SDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~n 298 (475)
T PRK09181 220 SEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKN 298 (475)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEec
Confidence 999999999999999999999997 999999999 68999999999999886 899999999999999999999999
Q ss_pred CCCCCcHHHHhcCCCcceEEecC
Q 024480 235 LNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 235 g~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
.++|+ ..||+|...
T Consensus 299 t~~p~---------~~GT~I~~~ 312 (475)
T PRK09181 299 TFEPE---------HPGTLITKD 312 (475)
T ss_pred CCCCC---------CCCeEEecC
Confidence 99886 679999754
|
|
| >PLN02825 amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=197.90 Aligned_cols=225 Identities=16% Similarity=0.219 Sum_probs=161.3
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHh-hhHHhcC-----CCCCCChHH
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR-GASAAGN-----SGLDRSSAD 92 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~-~~~~~~~-----~~l~~~~~~ 92 (267)
+.++.+++|||+||+++.+ . .+..++.+|+.|+..|.++|||||||++.. .+...+. .|++.+..+
T Consensus 13 ~~~rgktfVIk~gG~~l~~-------~-~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RVTd~~ 84 (515)
T PLN02825 13 QGHRGSTFVVVISGEVVAG-------P-HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRITDSA 84 (515)
T ss_pred HHHCCCEEEEEECchhhcC-------c-hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHH
Confidence 4567899999999999974 2 578999999999999999999999998544 3444432 344444333
Q ss_pred H---HHHHHHHHHHHHHHH--------HHHHcCCCe----eEeeccccc-------------ccc---c-hHHHHH-HHH
Q 024480 93 Y---IGMLATVMNAIFLQA--------TMESIGIPT----RVQTAFRMS-------------EVA---E-PYIRRR-AVR 139 (267)
Q Consensus 93 ~---~~~~~~~~~~~l~~~--------~l~~~Gi~~----~~~~~~~~~-------------~~~---~-~~~~~~-l~~ 139 (267)
. ...++..++..+.+. .|+++|.++ ..++..+.. |+. + ..++.. +..
T Consensus 85 ~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~ 164 (515)
T PLN02825 85 ALQASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKE 164 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHH
Confidence 2 233455566665532 357788876 333332211 111 0 013444 457
Q ss_pred HhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---C
Q 024480 140 HLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D 211 (267)
Q Consensus 140 ll~~g~iPIi~g~----~g~~-~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g 211 (267)
+|+.|.|||+++. +|.. ++++|.+|+.+|.+|+|++|||+||++ ++++ ++++|++++.+|+.++ +
T Consensus 165 ~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~~~ 237 (515)
T PLN02825 165 RLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIRKR 237 (515)
T ss_pred HHhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHHhh
Confidence 8999999999984 4444 489999999999999999999999977 5543 3578999998775532 0
Q ss_pred ------------------------C--------------------------------C-------------------cc-
Q 024480 212 ------------------------L--------------------------------S-------------------VM- 215 (267)
Q Consensus 212 ------------------------~--------------------------------g-------------------~m- 215 (267)
. . ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (515)
T PLN02825 238 AKQSEIAANYVKAVGGEDYSYSLGLDSVNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEERLSRLN 317 (515)
T ss_pred hhcchhhhhhhhhccccccccccccccccccccccccccccccccccccccccccccCcccccccccccccchhhchhhh
Confidence 0 0 11
Q ss_pred ----hHHHHHHHHhCCCc-EEEEcCCCCCcHH-HHhcCCCcceEEecCC
Q 024480 216 ----DMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGGTW 258 (267)
Q Consensus 216 ----k~~aa~~a~~~Gi~-v~I~ng~~~~~i~-~~l~g~~~GT~I~~~~ 258 (267)
++.+|..|.+.||+ +|++++..++.+. ++|+.+++||.|..+.
T Consensus 318 ~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~~~ 366 (515)
T PLN02825 318 GYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIASDM 366 (515)
T ss_pred hHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEeccCh
Confidence 37788899999996 9999999999987 7999999999998653
|
|
| >PRK04531 acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=192.94 Aligned_cols=194 Identities=19% Similarity=0.256 Sum_probs=140.6
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCCChHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSADYIGM 96 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~~~~~~~~~ 96 (267)
.+++|||+||+++.+ .+..++++|+.|+..|.++|||||||++.+. +...+. .|++.+..+.+..
T Consensus 36 ~~~~VIKiGG~~l~~---------~~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~G~RVTd~~tl~v 106 (398)
T PRK04531 36 ERFAVIKVGGAVLRD---------DLEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVNGLRVTSPEALAI 106 (398)
T ss_pred CcEEEEEEChHHhhc---------CHHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEECCEecCCHHHHHH
Confidence 489999999999873 2478999999999999999999999986544 333331 2333333332221
Q ss_pred HH---HHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHH
Q 024480 97 LA---TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRC 168 (267)
Q Consensus 97 ~~---~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~----~g~~-~~~sD~~Aa~lA 168 (267)
.- ...|..++. .+..+|+.|+|||+++. .|.. ++++|.+|+.+|
T Consensus 107 v~~~l~~vn~~lv~----------------------------~I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA 158 (398)
T PRK04531 107 VRKVFQRSNLDLVE----------------------------AVESSLRAGSIPVIASLGETPSGQILNINADVAANELV 158 (398)
T ss_pred HHHHHHHHHHHHHH----------------------------HHHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHH
Confidence 11 122222211 14578999999999874 2333 489999999999
Q ss_pred HhcCCcEEEEeeccCccccCCCCCCCCcccccccCH-HHHhhc-----CCCcc--hHHHHHHHHhCCCcEEEEcCCCCCc
Q 024480 169 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY-QEVTSK-----DLSVM--DMTAITLCQENNIPVVVFNLNQPGN 240 (267)
Q Consensus 169 ~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~-~e~~~l-----g~g~m--k~~aa~~a~~~Gi~v~I~ng~~~~~ 240 (267)
.+|+|++|+|+|||+|||+.+ +++|++|+. +|...+ -+++| |++++..+++....+++++...|++
T Consensus 159 ~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~ 232 (398)
T PRK04531 159 SALQPYKIIFLTGTGGLLDAD------GKLISSINLSTEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSD 232 (398)
T ss_pred HHcCCCEEEEEECCCCccCCC------CCCcccCCHHHHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCH
Confidence 999999999999999999743 679999986 344433 25788 8999999886544578888888999
Q ss_pred HHH-HhcCCCcceEEecCCC
Q 024480 241 IAK-AIQGERVGTLIGGTWN 259 (267)
Q Consensus 241 i~~-~l~g~~~GT~I~~~~~ 259 (267)
+.. ++..++.||+|....+
T Consensus 233 Ll~eLft~~G~GT~I~~g~~ 252 (398)
T PRK04531 233 LAKELFTHKGSGTLVRRGER 252 (398)
T ss_pred HHHHHccCCCCCeEEecCCc
Confidence 885 5566678999987543
|
|
| >KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=185.85 Aligned_cols=165 Identities=23% Similarity=0.312 Sum_probs=133.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccch-H-----HH---HHHHHHh-----hCCCEEEEeCC
Q 024480 87 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-Y-----IR---RRAVRHL-----EKGRVVIFAAG 152 (267)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~-~-----~~---~~l~~ll-----~~g~iPIi~g~ 152 (267)
+.++.|++..+++.++.++++++|+.+|.++...+.+........ + +. ....+++ ..+.+||++||
T Consensus 188 t~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvTGf 267 (559)
T KOG0456|consen 188 TLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVTGF 267 (559)
T ss_pred chhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEeec
Confidence 334556666778889999999999999999987666554332211 0 00 1111221 35789999998
Q ss_pred CC----------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHH
Q 024480 153 TG----------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTA 219 (267)
Q Consensus 153 ~g----------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~a 219 (267)
.| ..++.+|..|+.+|.+|++|.+.+|.|||||++.||++.|.|++++.++++|+.|+ |...+|+.+
T Consensus 268 ~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~s 347 (559)
T KOG0456|consen 268 LGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHPFS 347 (559)
T ss_pred cccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhccccc
Confidence 44 24689999999999999999999999999999999999999999999999999886 888999999
Q ss_pred HHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCCCC
Q 024480 220 ITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS 260 (267)
Q Consensus 220 a~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~~~ 260 (267)
++++.+..||++|-|..+|- ..||.|+++...
T Consensus 348 M~~~~~~~IPvRvKN~~NP~---------~~GTvI~~d~~m 379 (559)
T KOG0456|consen 348 MRPAREGRIPVRVKNSYNPT---------APGTVITPDRDM 379 (559)
T ss_pred cchhhccCcceEeecCCCCC---------CCceEeccchhh
Confidence 99999999999999998886 789999986543
|
|
| >COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-22 Score=159.42 Aligned_cols=198 Identities=21% Similarity=0.303 Sum_probs=146.7
Q ss_pred EEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhc-CCCCCCChHHHHHHHHHHHHHHH
Q 024480 27 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIF 105 (267)
Q Consensus 27 VIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~l 105 (267)
|||.|||...+ ....+-+.+..+ +.++.+|.|||.|++..++.. +.+++....+++...++-+...+
T Consensus 3 vVk~~Gs~~~~---------~~~~~~~ale~~---~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~ 70 (212)
T COG2054 3 VVKKGGSGVAE---------RAAAVKEALENL---QRSILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFY 70 (212)
T ss_pred eEEecCCChHH---------HHHHHHHHHHhh---cceEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 78888886542 223333333333 347999999999998776553 26788889999988888766666
Q ss_pred HHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCC------C---CCCCCCcHHHHHHHHHhcCCcEE
Q 024480 106 LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG------T---GNPFFTTDTAAALRCAEINAEVV 176 (267)
Q Consensus 106 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~------~---g~~~~~sD~~Aa~lA~~l~Ad~L 176 (267)
+++.......... .+. ....+.+..||+-++ + -.|.++||.+|.++|++++|.++
T Consensus 71 lad~~~~~~~~tv----~ep------------~~~i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~v 134 (212)
T COG2054 71 LADLASRFVTDTV----TEP------------EDGIKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEV 134 (212)
T ss_pred HHhhhccccccee----ech------------hhccCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEE
Confidence 6544332221111 111 123344556666653 1 14679999999999999999999
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCC-cceEEe
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGER-VGTLIG 255 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~-~GT~I~ 255 (267)
++.|||||||+.+|+ ++++++|+..|+.. |...+++..-+.+.+++++++++||..|+++.++++|++ +||+|.
T Consensus 135 v~aTDVdGI~~~~~~----~kLv~eI~A~dl~~-~~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Iv 209 (212)
T COG2054 135 VKATDVDGIYEEDPK----GKLVREIRASDLKT-GETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIV 209 (212)
T ss_pred EEEecCCcccccCCc----chhhhhhhHhhccc-CcccccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceEEEe
Confidence 999999999998764 68999999988765 556778888899999999999999999999999999975 699997
Q ss_pred cC
Q 024480 256 GT 257 (267)
Q Consensus 256 ~~ 257 (267)
+.
T Consensus 210 g~ 211 (212)
T COG2054 210 GG 211 (212)
T ss_pred CC
Confidence 63
|
|
| >COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-21 Score=164.75 Aligned_cols=227 Identities=25% Similarity=0.367 Sum_probs=158.0
Q ss_pred ceEEEEeccccccCCCC-C--CCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh----HHhc-CCCCCCChHHHHH
Q 024480 24 QRVLLKVSGEALAGDHT-Q--NIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA----SAAG-NSGLDRSSADYIG 95 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~-~--~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~----~~~~-~~~l~~~~~~~~~ 95 (267)
+++||.+||++|-..++ . ....+.++..+++|+.+.++|+++||.||.|++.-.+ ..+. ..+.+..++|.+.
T Consensus 1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~ 80 (312)
T COG0549 1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLV 80 (312)
T ss_pred CeEEEEecchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccccCCCCccHHHHh
Confidence 47999999999976643 2 2346788899999999999999999999999854221 1111 1234556777766
Q ss_pred HHHHHHHHHH----HHHHHHHcCCCee---E--eecccccc--c-------------------------------cchH-
Q 024480 96 MLATVMNAIF----LQATMESIGIPTR---V--QTAFRMSE--V-------------------------------AEPY- 132 (267)
Q Consensus 96 ~~~~~~~~~l----~~~~l~~~Gi~~~---~--~~~~~~~~--~-------------------------------~~~~- 132 (267)
++..-+--++ +.+.|..+|++.. . +..++..| | ++.|
T Consensus 81 AmsQG~IGy~l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~R 160 (312)
T COG0549 81 AMSQGMIGYMLQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGYR 160 (312)
T ss_pred HhhhhHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCee
Confidence 5443222222 3455666786321 1 12222111 0 0001
Q ss_pred -----------HHH-HHHHHhhCCCEEEEeCCCCC-------------CCCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 024480 133 -----------IRR-RAVRHLEKGRVVIFAAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYD 187 (267)
Q Consensus 133 -----------~~~-~l~~ll~~g~iPIi~g~~g~-------------~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~ 187 (267)
++. .+..++++|.++|..|..|. .++|.|..++.||.+++||.|+++||||+||-
T Consensus 161 RVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~ 240 (312)
T COG0549 161 RVVPSPKPVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYV 240 (312)
T ss_pred EecCCCCCccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchhee
Confidence 222 35578899999998875332 25899999999999999999999999999998
Q ss_pred CCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHH-HHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 188 DNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAIT-LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 188 ~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~-~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
...+ |+.+.+++++.+|+.++ ..|.| |++||. ++...|-+++|.+ .+.+.++|.|+ .||.|.+
T Consensus 241 n~gk--p~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~ 312 (312)
T COG0549 241 NFGK--PNQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP 312 (312)
T ss_pred cCCC--ccchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHHhccC-CCcEecC
Confidence 8753 67789999999997653 35667 888875 5555567799986 67888999997 6999863
|
|
| >KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-06 Score=80.01 Aligned_cols=167 Identities=16% Similarity=0.233 Sum_probs=99.4
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHh-cC-----CCCCCChHHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GN-----SGLDRSSADYIGML 97 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~-~~-----~~l~~~~~~~~~~~ 97 (267)
+.+|+|-|+...+ +.++.++..++-++..|.+.|||||.|..-..+-.. +. .+++.+..+.+++.
T Consensus 96 ~fvV~~~g~~~~t---------~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~~ 166 (520)
T KOG2436|consen 96 KFVVIKSGEAIST---------SLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQAA 166 (520)
T ss_pred eEEEEeccccccc---------chHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHHh
Confidence 3455555554433 356788899999999999999999999865443222 21 12233333333332
Q ss_pred HH----HHHHHHHHHHHHHcCCCeeEeecccc-------c--ccc--chH--------HH-HHHHHHhhCCCEEEEeCC-
Q 024480 98 AT----VMNAIFLQATMESIGIPTRVQTAFRM-------S--EVA--EPY--------IR-RRAVRHLEKGRVVIFAAG- 152 (267)
Q Consensus 98 ~~----~~~~~l~~~~l~~~Gi~~~~~~~~~~-------~--~~~--~~~--------~~-~~l~~ll~~g~iPIi~g~- 152 (267)
-+ ..|..++ ..|++.|-.+++.+.-.. . .+. ..| ++ +.+..+++.|.+|++..-
T Consensus 167 ~~~~~~E~n~~lv-~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla 245 (520)
T KOG2436|consen 167 KESVSLEANLNLV-INLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLA 245 (520)
T ss_pred hhcchhhhhhHHH-HHHHHhhceeccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhc
Confidence 22 1233333 467777766554332211 0 000 001 12 235578899999998863
Q ss_pred ---CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHH
Q 024480 153 ---TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE 206 (267)
Q Consensus 153 ---~g~~-~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e 206 (267)
.|+. .++.|.+|..+|..|+|+++++++|+.=+...+ +..++-+...|
T Consensus 246 ~TaSGqvlnvNa~~~a~elA~~L~~~kli~l~d~g~~l~e~------ge~~S~l~l~~ 297 (520)
T KOG2436|consen 246 ATASGQVLNVNADEVAGELALALGPDKLILLMDKGRILKEN------GEDISSLILQE 297 (520)
T ss_pred ccCccceEEeeHHHHhhHHHhccCcceeEEecccccccccC------cccccccccch
Confidence 3443 489999999999999999999999983333333 34455554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 267 | ||||
| 3ek5_A | 243 | Unique Gtp-Binding Pocket And Allostery Of Ump Kina | 9e-71 | ||
| 3nwy_A | 281 | Structure And Allosteric Regulation Of The Uridine | 8e-68 | ||
| 1z9d_A | 252 | Crystal Structure Of A Putative Uridylate Kinase (U | 7e-64 | ||
| 4a7w_A | 240 | Crystal Structure Of Uridylate Kinase From Helicoba | 3e-60 | ||
| 2a1f_A | 247 | Crystal Structure Of Uridylate Kinase Length = 247 | 4e-60 | ||
| 2bnd_A | 241 | The Structure Of E.Coli Ump Kinase In Complex With | 4e-58 | ||
| 2bne_A | 241 | The Structure Of E. Coli Ump Kinase In Complex With | 5e-58 | ||
| 1ybd_A | 239 | Crystal Structure Analysis Of Uridylate Kinase From | 2e-56 | ||
| 2bnf_A | 241 | The Structure Of E. Coli Ump Kinase In Complex With | 3e-53 | ||
| 2jjx_A | 255 | The Crystal Structure Of Ump Kinase From Bacillus A | 8e-50 | ||
| 2va1_A | 256 | Crystal Structure Of Ump Kinase From Ureaplasma Par | 9e-43 | ||
| 2ij9_A | 219 | Crystal Structure Of Uridylate Kinase From Archaeog | 2e-16 | ||
| 2brx_A | 244 | Ump Kinase From Pyrococcus Furiosus Without Ligands | 1e-12 | ||
| 2ji5_A | 227 | Structure Of Ump Kinase From Pyrococcus Furiosus Co | 2e-12 | ||
| 2j4j_A | 226 | Crystal Structure Of Uridylate Kinase From Sulfolob | 2e-11 | ||
| 2bmu_A | 226 | Ump Kinase From Pyrococcus Furiosus Complexed With | 2e-08 | ||
| 2bri_A | 225 | Ump Kinase From Pyrococcus Furiosus Complexed With | 2e-08 | ||
| 3ll9_A | 269 | X-Ray Structures Of Isopentenyl Phosphate Kinase Le | 3e-07 | ||
| 4f6t_B | 268 | The Crystal Structure Of The Molybdenum Storage Pro | 2e-06 | ||
| 2ogx_B | 270 | The Crystal Structure Of The Molybdenum Storage Pro | 6e-06 | ||
| 3c1n_C | 473 | Crystal Structure Of Allosteric Inhibition Threonin | 3e-04 | ||
| 2hmf_A | 469 | Structure Of A Threonine Sensitive Aspartokinase Fr | 3e-04 |
| >pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From A Gram- Negative Phytopathogen Bacterium Length = 243 | Back alignment and structure |
|
| >pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine Monophosphate Kinase From Mycobacterium Tuberculosis Length = 281 | Back alignment and structure |
|
| >pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase (Ump-Kinase) From Streptococcus Pyogenes Length = 252 | Back alignment and structure |
|
| >pdb|4A7W|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter Pylori Length = 240 | Back alignment and structure |
|
| >pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase Length = 247 | Back alignment and structure |
|
| >pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp Length = 241 | Back alignment and structure |
|
| >pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump Length = 241 | Back alignment and structure |
|
| >pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From Neisseria Meningitidis Length = 239 | Back alignment and structure |
|
| >pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp Length = 241 | Back alignment and structure |
|
| >pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus Anthracis (Ba1797) Length = 255 | Back alignment and structure |
|
| >pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum Length = 256 | Back alignment and structure |
|
| >pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus Fulgidus Length = 219 | Back alignment and structure |
|
| >pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands Length = 244 | Back alignment and structure |
|
| >pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed With Utp Length = 227 | Back alignment and structure |
|
| >pdb|2J4J|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus Solfataricus In Complex With Ump And Amppcp To 2.1 Angstrom Resolution Length = 226 | Back alignment and structure |
|
| >pdb|2BMU|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its Substrate Ump And Its Substrate Analog Amppnp Length = 226 | Back alignment and structure |
|
| >pdb|2BRI|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its Substrate Analog Amppnp Length = 225 | Back alignment and structure |
|
| >pdb|3LL9|A Chain A, X-Ray Structures Of Isopentenyl Phosphate Kinase Length = 269 | Back alignment and structure |
|
| >pdb|4F6T|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein (Mosto) From Azotobacter Vinelandii Loaded With Various Polyoxometalates Length = 268 | Back alignment and structure |
|
| >pdb|2OGX|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein From Azotobacter Vinelandii Loaded With Polyoxotungstates (Wsto) Length = 270 | Back alignment and structure |
|
| >pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine-Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473 | Back alignment and structure |
|
| >pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240 | Back alignment and structure |
|---|
Score = 316 bits (811), Expect = e-110
Identities = 123/240 (51%), Positives = 172/240 (71%), Gaps = 3/240 (1%)
Query: 16 MSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 75
+K K RVL+K SGEALAGD+ ID + IA+E+ S+ IEV IV+GGGNI
Sbjct: 2 QAKIKNK--RVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNII 59
Query: 76 RGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRR 135
RG SAA + R+S DY+GMLATV+NA+ +Q +E IG+ TRVQ+A + E+ E YI R
Sbjct: 60 RGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYR 119
Query: 136 RAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN 195
+A+RHLEKGRVVIF AGTGNPFFTTDTAA LR EI +++++KAT VDG+YD +P + +
Sbjct: 120 KAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKD 179
Query: 196 ARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGER-VGTLI 254
A+ LDTL+Y + D+ VMD TAI+L ++N +P+VV N+ + GN+ + I+ ++ V +++
Sbjct: 180 AKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239
|
| >2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247 | Back alignment and structure |
|---|
Score = 316 bits (811), Expect = e-110
Identities = 110/240 (45%), Positives = 167/240 (69%), Gaps = 3/240 (1%)
Query: 16 MSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 75
+S+P YK R+LLK+SGEAL G+ IDP I +A E+ + +G+EV++V+GGGN+F
Sbjct: 3 LSQPIYK--RILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLF 60
Query: 76 RGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRR 135
RGA A +G++R D++GMLATVMN + ++ ++ + ++ +AF+++ + + Y
Sbjct: 61 RGAKLA-KAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWS 119
Query: 136 RAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN 195
A++ L + RVVIF+AGTGNPFFTTD+ A LR EI A+VVLKAT VDGVYD +P +NP+
Sbjct: 120 EAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPD 179
Query: 196 ARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255
A+L L+Y EV K+L VMD++A TL +++ +P+ VFN+ +PG + + + G GT I
Sbjct: 180 AKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC 239
|
| >3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243 | Back alignment and structure |
|---|
Score = 316 bits (810), Expect = e-110
Identities = 124/243 (51%), Positives = 178/243 (73%), Gaps = 3/243 (1%)
Query: 14 NGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN 73
N MS+ SY+ R+LLK+SGEAL GD IDPK+ +A EV + G +VA+V+GGGN
Sbjct: 2 NAMSELSYR--RILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGN 59
Query: 74 IFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYI 133
IFRGA A SG+DR + D++GMLATV+NA+ +Q +E +G RV +A ++++V E +I
Sbjct: 60 IFRGAGLAA-SGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFI 118
Query: 134 RRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN 193
RRRA+RHLEKGR+ IFAAGTGNPFFTTD+ AALR EI A+++LKAT VDGVYD +P+++
Sbjct: 119 RRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKH 178
Query: 194 PNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 253
+A D+LTY EV + L VMD A L +++++P+ +F +++PG + + + G ++GTL
Sbjct: 179 SDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTL 238
Query: 254 IGG 256
+ G
Sbjct: 239 VQG 241
|
| >1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239 | Back alignment and structure |
|---|
Score = 307 bits (787), Expect = e-106
Identities = 123/239 (51%), Positives = 172/239 (71%), Gaps = 3/239 (1%)
Query: 16 MSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 75
+ YK RVLLK+SGE+L G I+ + E+A V ++G++V IVVGGGNIF
Sbjct: 2 TQQIKYK--RVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIF 59
Query: 76 RGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRR 135
RG SA +DR++ADY+GM+ATVMNA+ L+ E++GI RVQ+A M ++AE Y R
Sbjct: 60 RGVSAQ-AGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARP 118
Query: 136 RAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN 195
+A+++LE+G+VVIFAAGTGNPFFTTDTAAALR AE+N +V+LKATNVDGVY +P+++P+
Sbjct: 119 KAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPS 178
Query: 196 ARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
A +T+T+ E K+L VMD TA LC+E + +VVF + + G++ + I GE GTL+
Sbjct: 179 ATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV 237
|
| >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270 | Back alignment and structure |
|---|
Score = 305 bits (784), Expect = e-105
Identities = 50/261 (19%), Positives = 102/261 (39%), Gaps = 12/261 (4%)
Query: 3 SMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLG 62
S++ + + ++K+ G+++ + P + E+ + R
Sbjct: 16 SLTDPQLQAAAAAAADFRILPDATVIKIGGQSVIDRGRAAVYP-----LVDEIVAA-RKN 69
Query: 63 IEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQT 121
++ I G G R + GL +G NA L + GIP
Sbjct: 70 HKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQNAAMLGQLLAKHGIPVVGGA 129
Query: 122 AFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGN-PFFTTDTAAALRCAEINAEVVLKAT 180
++ + + ++ + A G P + TD L + + ++
Sbjct: 130 GLSAVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVK 189
Query: 181 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL--SVMDMTAITLCQ--ENNIPVVVFNLN 236
+ DG+Y NP+ + +A + ++ E+ +K L S+++ + L Q ++ V V N
Sbjct: 190 DEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGL 249
Query: 237 QPGNIAKAIQGERVGTLIGGT 257
PGN+ +A+ GE VGT+I +
Sbjct: 250 VPGNLTRALAGEHVGTIITAS 270
|
| >2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256 | Back alignment and structure |
|---|
Score = 304 bits (781), Expect = e-105
Identities = 88/254 (34%), Positives = 151/254 (59%), Gaps = 3/254 (1%)
Query: 2 SSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRL 61
SS + + QR+++K+SG L + + ID +A ++ +++
Sbjct: 3 SSHHHHHHSSGLVPRGSHMMRKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKK 62
Query: 62 GIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQT 121
I V+IV+GGGNI+RG+ A +DR+ AD +GM+AT++N + L+ + + + T V +
Sbjct: 63 YI-VSIVLGGGNIWRGSIAK-ELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLS 120
Query: 122 AFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 181
A + ++ + +EK +V+IF AGTG P+FTTD+ AA+R AE + ++L N
Sbjct: 121 AIKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKN 180
Query: 182 -VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGN 240
VDGVYD +P+ NPNA+ + +T+ +++L VMD TA+ LCQENNI ++VFN+++P
Sbjct: 181 GVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNA 240
Query: 241 IAKAIQGERVGTLI 254
I ++ + T++
Sbjct: 241 IVDVLEKKNKYTIV 254
|
| >1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252 | Back alignment and structure |
|---|
Score = 303 bits (778), Expect = e-105
Identities = 123/236 (52%), Positives = 171/236 (72%), Gaps = 2/236 (0%)
Query: 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 81
K+QR+L+K+SGEALAG+ ID AIA+E+A V G+++A+V+GGGN++RG AA
Sbjct: 6 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAA 65
Query: 82 GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 141
++G+DR ADY GML TVMNA+ + +++ G+ TRVQTA M VAEPYIR RA+RHL
Sbjct: 66 -DAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHL 124
Query: 142 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLD 200
EK R+V+F AG G+P+F+TDT AALR AEI A+ +L A N VDGVY+ +P+++ NA D
Sbjct: 125 EKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFD 184
Query: 201 TLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256
LT+ EV + L +MD TA TL +N+I +VVFN+N+ GNI + + GE +GT +
Sbjct: 185 ELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN 240
|
| >2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255 | Back alignment and structure |
|---|
Score = 300 bits (769), Expect = e-103
Identities = 101/244 (41%), Positives = 145/244 (59%), Gaps = 3/244 (1%)
Query: 13 DNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG 72
+ ++RVL+K+SG ALA + + K IA E+ S+ LGIEV+IV+GGG
Sbjct: 2 AHHHHHHMRPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGG 61
Query: 73 NIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQ-ATMESIGIPTRVQTAFRMSEVAEP 131
NIFRG A G+DR AD IG L T++N++ L+ RV T+ + VAEP
Sbjct: 62 NIFRGHLAE-EWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEP 120
Query: 132 YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNP 190
YIR RAV HL+ G +VIF G G PF TTD + R E+N++ +L A VDGV+ +P
Sbjct: 121 YIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDP 180
Query: 191 RRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERV 250
+ N +A++ L Y +V +++ VMD A+ L ++ N+P VFN ++PG + + GE V
Sbjct: 181 KHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHV 240
Query: 251 GTLI 254
GTLI
Sbjct: 241 GTLI 244
|
| >2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244 | Back alignment and structure |
|---|
Score = 299 bits (767), Expect = e-103
Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 30/249 (12%)
Query: 16 MSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 75
+ + S+ R++ + G L + N D IA ++ V+ EVA+VVGGG +
Sbjct: 14 VPRGSHM--RIVFDIGGSVLVPE---NPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLA 67
Query: 76 RG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIR 134
R A + D+IG+ T NA+ L A + P V E +
Sbjct: 68 RKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPV----------VVEDFWE 117
Query: 135 RRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP 194
L+K I G +P TTD AAL + A++++ TNVDGVY +P+++P
Sbjct: 118 AWKAVQLKK----IPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDP 173
Query: 195 NARLLDTLTYQEV---------TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 245
A+ + + +E+ + SV+D A + + I +V ++ + I
Sbjct: 174 TAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVI 233
Query: 246 QGERVGTLI 254
+G+ GT I
Sbjct: 234 KGDHNGTTI 242
|
| >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281 | Back alignment and structure |
|---|
Score = 300 bits (770), Expect = e-103
Identities = 123/253 (48%), Positives = 169/253 (66%), Gaps = 2/253 (0%)
Query: 2 SSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRL 61
+ S + + RVLLK+ GE G +DP + +AR++A V R
Sbjct: 29 APASKPEPASTGAASAAQLSGYSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRG 87
Query: 62 GIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQT 121
G+++A+V+GGGN FRGA G++R+ +DY+GML TVMN++ LQ +E GI TRVQT
Sbjct: 88 GVQIAVVIGGGNFFRGAQLQ-QLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQT 146
Query: 122 AFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 181
A M +VAEPY+ RAVRHLEKGRVVIF AG G P+F+TDT AA R EI A+VVL A
Sbjct: 147 AITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKA 206
Query: 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNI 241
VDGV+ ++PR NP A LL ++++EV + L V D TA +LC +N +P++VFNL GNI
Sbjct: 207 VDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNI 266
Query: 242 AKAIQGERVGTLI 254
A+A++GE++GTL+
Sbjct: 267 ARAVRGEKIGTLV 279
|
| >2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226 | Back alignment and structure |
|---|
Score = 291 bits (746), Expect = e-100
Identities = 57/241 (23%), Positives = 107/241 (44%), Gaps = 30/241 (12%)
Query: 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN 83
++LK+SG+ D + + + + + + G V IV GGG+ R A
Sbjct: 2 NIILKISGKFFDED-----NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLARE 56
Query: 84 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 143
G+ + D +G+ A+ +NA + +++ + P ++
Sbjct: 57 IGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHV------------PQSLEEFIQDWSH 104
Query: 144 GRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT 203
G+VV+ G P +T AAL +++ ++ ATNVDGVY+ +PR + +L+ LT
Sbjct: 105 GKVVV--TGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLT 162
Query: 204 YQE----------VTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 253
Q+ V + ++D AI + + + I V+V N + I ++GE V ++
Sbjct: 163 TQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSI 222
Query: 254 I 254
I
Sbjct: 223 I 223
|
| >2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219 | Back alignment and structure |
|---|
Score = 276 bits (708), Expect = 1e-94
Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 33/241 (13%)
Query: 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN 83
+V+L + G L+ + + A+ + SV + +V +VVGGG + R +A
Sbjct: 2 KVVLSLGGSVLSNE------SEKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARE 54
Query: 84 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 143
G + DYIG+ AT +NA+ L +A + P A +
Sbjct: 55 LGASETFCDYIGIAATRLNAMLLI-------------SAIPSAAKKVPVDFMEAEELSKL 101
Query: 144 GRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT 203
RVV+ G P TTD AAL I A+V + ATNVDGVY +P+ + +A D L+
Sbjct: 102 YRVVVM--GGTFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLS 159
Query: 204 YQEVTSKDL---------SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
Q++ V+D+ A + + + I V P NI KA++GE VGT+I
Sbjct: 160 PQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL-GTPENIMKAVKGEAVGTVI 218
Query: 255 G 255
Sbjct: 219 A 219
|
| >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276 | Back alignment and structure |
|---|
Score = 224 bits (572), Expect = 3e-73
Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 46/273 (16%)
Query: 8 GVTLNDNGMSKPSY--KWQRVL-----LKVSGEALAGDHTQNIDPKITMAIAREVASVTR 60
TL D +++P + R+L +K+ G + + + E+ +
Sbjct: 17 RQTLQDRDLTRPVAGKRPIRLLPWLQVVKIGGRVMDRG------ADAILPLVEELRKLLP 70
Query: 61 LGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRV 119
+ I+ G G R + G + GL S + N L A + S G+
Sbjct: 71 -EHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSY-- 127
Query: 120 QTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAA----------GTGNPFFTTDTAAALRCA 169
V P + + HL R V+ +A G+ P DT A L
Sbjct: 128 --------VEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLAD 179
Query: 170 EINAEVVLKATNVDGVYDDNPRR--NPNARLLDTLTYQEVTSK------DLSVMDMTAIT 221
A + NVDG+Y +P AR L + ++ D +++D+ A
Sbjct: 180 AFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATA 239
Query: 222 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
V V N PG + A++GE VGTLI
Sbjct: 240 RH---IERVQVVNGLVPGRLTAALRGEHVGTLI 269
|
| >3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Length = 266 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 3e-49
Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 35/260 (13%)
Query: 25 RVLLKVSGEALAG-DHTQNIDPKITMAIAREVASVTRL------GIEVAIVVGGGNIFRG 77
+LK+ G L+ + +I IA E+ + I++ +V GGG
Sbjct: 8 LTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHP 67
Query: 78 ASAAGNSGLDRSSADYIGMLATVM---------NAIFLQATMESIGIPTRVQTAFRMSEV 128
A ++ +I M N I + +Q + +
Sbjct: 68 V-AKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFG 126
Query: 129 AEPYIRRRAVRHLEKGRVVIFAAG-------TGNPFFTTDTAAALRCAEINAEVVLKATN 181
+ A++ + K +V G G + D E+ A+++L AT+
Sbjct: 127 DKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATD 186
Query: 182 VDGVYDDNPRRNPNARLLDTLTYQEVTS--KDLSVMDMTA-----ITLCQENNIPVVVFN 234
VDGV DN + +D ++ + + +D+T I + ++N VFN
Sbjct: 187 VDGVLIDNKP----IKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFN 242
Query: 235 LNQPGNIAKAIQGERVGTLI 254
N+ NI KA+ GE GT I
Sbjct: 243 GNKANNIYKALLGEVEGTEI 262
|
| >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* Length = 286 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 2e-17
Identities = 40/263 (15%), Positives = 78/263 (29%), Gaps = 32/263 (12%)
Query: 24 QRVLLKVSGEALA-GDHTQNIDPKITMAIAREVASVTRLGIEVAIVV-GGGNIFRGASAA 81
+ +KV G + D ++D AR A + +++ GGG GA
Sbjct: 24 DFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRD 83
Query: 82 GNSGLDRSSADYIGMLATVMNAI---FLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAV 138
+S S A V +++ + A P +R +
Sbjct: 84 HDSTHAFSLAGLTEATFEVKKRWAEKLRGIGVDAFPLQL---AAMCTLRNGIPQLRSEVL 140
Query: 139 -RHLEKGRV------VIFAAGTGNPFFTTDTAAALRCAEINAEV-VLKATNVDGVYDDNP 190
L+ G + +F F++D + + + V+ T+VDG+ D
Sbjct: 141 RDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGA 200
Query: 191 RRNPNARLLDTLTYQEV--TSKDLSVMDMT--------AITLCQENNIPVVVFNLNQPGN 240
+ +D + ++ S D T A+ C + + +
Sbjct: 201 GGDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSD 260
Query: 241 I------AKAIQGERVGTLIGGT 257
+ + T I T
Sbjct: 261 LEFLTAPFSSWPAHVRSTRITTT 283
|
| >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 4e-17
Identities = 47/260 (18%), Positives = 90/260 (34%), Gaps = 40/260 (15%)
Query: 22 KWQRVLLKVSGEALAGDHT-QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA 80
+ ++LK+ G + + +I + ++ ++ VV GG F G
Sbjct: 2 PFTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSF-GHIK 56
Query: 81 AGNSGL----DRSSADYIGMLATVM---NAIFLQATMESIGIPTRVQ---TAFRMSEVAE 130
A GL + S+ ++ M + + + A M +G+ + +A R
Sbjct: 57 AMEFGLPGPKNPRSSIGYSIVHRDMENLDLMVIDA-MIEMGMRP-ISVPISALRYDG--- 111
Query: 131 PYIRRRAVRHLEKGRVV-------IFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 183
+ V ++ D A + +V + T+VD
Sbjct: 112 -RFDYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVD 170
Query: 184 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT---------AITLCQENNIPVVVFN 234
G+Y +P+RNP+A LL + + D D+T + + V + N
Sbjct: 171 GIYSKDPKRNPDAVLLRDID--TNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLIN 228
Query: 235 LNQPGNIAKAIQGERVGTLI 254
N P I + +GT+I
Sbjct: 229 GNHPERIGDIGKESFIGTVI 248
|
| >3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 269 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 5e-16
Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 50/274 (18%)
Query: 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN 83
++LK+ G + ++ + R + + ++V G F G AG
Sbjct: 3 HMIILKLGGSVITRKDSEEPAIDRD-NLERIASEIGNASPSSLMIVHGAGSF-GHPFAGE 60
Query: 84 SGLDRSSADYIGM----------------LATVMNAIFLQATMESIGI-PTRVQTAFRMS 126
+ + + L + + L + ++ + P+ A
Sbjct: 61 YRIGSEIENEEDLRRRRFGFALTQNWVKKLNSHVCDALLAEGIPAVSMQPSAFIRAHAGR 120
Query: 127 EVAEPYIRRRAVRHLEKGRV--VIF-------AAGTGNPFFTTDTAAALRCAEINAEVVL 177
+ +R + + V++ + D + E V+
Sbjct: 121 IS---HADISLIRSYLEEGMVPVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLMPERVI 177
Query: 178 KATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMD----------M----TAITLC 223
T+VDGVY NP+++P+ARLLD + + DL +D M + L
Sbjct: 178 LGTDVDGVYTRNPKKHPDARLLDVIGSLD----DLESLDGTLNTDVTGGMVGKIRELLLL 233
Query: 224 QENNIPVVVFNLNQPGNIAKAIQGERV-GTLIGG 256
E + + N PGNI +A+ GE V GT I G
Sbjct: 234 AEKGVESEIINAAVPGNIERALLGEEVRGTRITG 267
|
| >3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Length = 446 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 5e-11
Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 26/181 (14%)
Query: 101 MNAIFLQATMESIGIPTRVQTAFRMS-EVAEPYIRRRAVRHLEKGRVVI---FAAGTGNP 156
+N + L + + I F S E + + + F + N
Sbjct: 119 LNGVILAKYLNAEFIDAAEVIFFDKSGCFDEKKSYEKIKEKVLSCNKAVIPGFYGSSFNG 178
Query: 157 FFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK 210
T D ++ A +NA++ T+V G +PR N + + ++Y+E+
Sbjct: 179 DVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELR-- 236
Query: 211 DLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKT 265
+LS V+ AI +++ IP+ + N N+P GTLI + ++
Sbjct: 237 ELSYMGATVLHEEAIFPVKDSGIPINIKNTNKP---------SDPGTLILSDTHKEINLG 287
Query: 266 L 266
Sbjct: 288 T 288
|
| >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 52/262 (19%)
Query: 27 LLKVSGEALAGDHTQNIDP--KITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNS 84
L+ ++ G+ + +D I AI + + E+ ++ + A+A S
Sbjct: 48 LVALAEGLEPGERFEKLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAAALATS 107
Query: 85 GLDRSSADYIGMLATVMNAIFLQATMESIGIPT---------RVQTAFRMSEVAEPYIRR 135
+ D + +M+ + + + R F +E +
Sbjct: 108 P---ALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAE 164
Query: 136 RAVRHL---EKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVD 183
A L +VI F TT D AAL ++A V T+V
Sbjct: 165 LAALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVP 224
Query: 184 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT----------AITLCQENNIPVVVF 233
G+Y +PR A+ +D + + E +M + ++IPV V
Sbjct: 225 GIYTTDPRVVSAAKRIDEIAFAE-------AAEMATFGAKVLHPATLLPAVRSDIPVFVG 277
Query: 234 NLNQPGNIAKAIQGERVGTLIG 255
+ P GTL+
Sbjct: 278 SSKDP---------RAGGTLVC 290
|
| >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A Length = 367 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 4e-10
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 22/111 (19%)
Query: 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDM--- 217
D +AL A+ +L T+ G+Y +PR NP A L+ +V D ++ +
Sbjct: 150 DNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIK-----DVYGIDDALRAIAGD 204
Query: 218 --------------TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
A + I ++ ++PG I ++G VGTL
Sbjct: 205 SVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLF 255
|
| >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 3e-09
Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 40/184 (21%)
Query: 101 MNAIFLQATMESIGIPTR----------VQTAFRMSEVAEPYIRRRAVRH----LEKGRV 146
++ A + +IG+ R F ++ E A R + V
Sbjct: 150 LSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAV 209
Query: 147 VI----FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA 196
I G TT D A + + + +VDGV +P A
Sbjct: 210 PIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRA 269
Query: 197 RLLDTLTYQEVTSKDLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVG 251
+ LT+ E +L+ V+ ++ +E IPV V N P + G
Sbjct: 270 TPVPYLTFDEAA--ELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNP---------KAPG 318
Query: 252 TLIG 255
T+I
Sbjct: 319 TIIT 322
|
| >2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 Length = 251 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 4e-08
Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 24/112 (21%)
Query: 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDM--- 217
D+ +A +A++++ +++DG YD NP +A+ L+ ++T +
Sbjct: 143 DSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLE-----KITHIKEEWLQATIK 197
Query: 218 --------------TAITLCQENNIPVVVFNLNQPGNIAKAIQ--GERVGTL 253
A E+N + + + + + GTL
Sbjct: 198 TGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTL 249
|
| >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 8e-07
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 21/111 (18%)
Query: 139 RHLEKGRVVIFA----AGTGNPFFTT------DT-AAALRCAEINAEVVLKATNVDGVYD 187
L++G++ I A TT DT A AL A +NA+V ++VDGVY
Sbjct: 123 EALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAA-LNADVCEIYSDVDGVYT 181
Query: 188 DNPRRNPNARLLDTLTYQE------VTSKDLSVMDMTAITLCQENNIPVVV 232
+PR PNA+ L+ L+++E V SK ++ + ++ + N+P+ V
Sbjct: 182 ADPRIVPNAQKLEKLSFEEMLELAAVGSK---ILVLRSVEYARAFNVPLRV 229
|
| >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 26/114 (22%)
Query: 139 RHLEKGRVVIFA-------AGTGNPFFTT------DT-AAALRCAEINAEVVLKATNVDG 184
HL +G+VV+ A TT DT A AL A + A+ T+V G
Sbjct: 123 HHLREGKVVVVAGFQGISSVEHLE--ITTLGRGGSDTSAVALAAA-LKADFCEIYTDVPG 179
Query: 185 VYDDNPRRNPNARLLDTLTYQE------VTSKDLSVMDMTAITLCQENNIPVVV 232
+ +PR P A+L+ +T E + +K V+ A+ + + IP+VV
Sbjct: 180 ILTTDPRLVPEAQLMAEITCDEMLELASLGAK---VLHPRAVEIARNYGIPLVV 230
|
| >3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* Length = 456 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-05
Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 43/170 (25%)
Query: 48 TMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLAT-----VMN 102
++ A++ A R E A+ R A + G T V++
Sbjct: 111 SLGQAQQFAGTVRSRFEAALCGSVSGFAR---APSVPLVS-------GNFLTARPIGVID 160
Query: 103 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFA----AGTGNPF- 157
++ G+ + TA +R L+ G +V + G F
Sbjct: 161 GTDMEYA----GVIRKTDTAA---------LR----FQLDAGNIVWMPPLGHSYGGKTFN 203
Query: 158 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV 207
AAA + AE ++ T DG+ + L +TL+ QE
Sbjct: 204 LDMVQAAASVAVSLQAEKLVYLTLSDGISRP------DGTLAETLSAQEA 247
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 41.5 bits (96), Expect = 6e-05
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 13/41 (31%)
Query: 135 RRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEV 175
++A++ L+ + ++A D+A AL A I A +
Sbjct: 19 KQALKKLQ-ASLKLYA-----D----DSAPAL--A-IKATM 46
|
| >1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 Length = 314 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 1e-04
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 20/98 (20%)
Query: 128 VAEPYIRR----RAVRHLEKGRVVIFAAGTGNP--------------FFTTDTAAALRCA 169
V P + ++ L + V++ A+G G D A
Sbjct: 165 VPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAE 224
Query: 170 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV 207
E+NA++ + T+V+G + L + +E+
Sbjct: 225 EVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEEL 260
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 1e-04
Identities = 40/327 (12%), Positives = 93/327 (28%), Gaps = 102/327 (31%)
Query: 13 DNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG 72
D + Y+++ +L N D K + + + S E+ ++
Sbjct: 8 DFETGEHQYQYKDIL-----SVFEDAFVDNFDCKDVQDMPKSILSKE----EIDHIIMSK 58
Query: 73 N-------IFRGASAAGNSGLDR-----SSADYIGMLATVMNAIFLQATMESIGIPTRVQ 120
+ +F + + + +Y L + + Q +M + +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 121 TAFRMSEVAEPY--IR-------RRAVRHLEKGR-VVIFA-AGTGNPFFTTDTAAALRCA 169
+ ++V Y R R+A+ L + V+I G+G T
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---TWVALDVCLSY 174
Query: 170 EI-----------------NAEVVLKA-----TNVDGVY------DDNPRRNPNA----- 196
++ + E VL+ +D + N + ++
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 197 -RLLDTLTYQE------------------------VTSKDLSVMDMTAITLCQENNIPVV 231
RLL + Y+ +T++ V D ++ +I +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLD 292
Query: 232 ----VFNLNQPGNI-AKAIQGERVGTL 253
++ ++ K + R L
Sbjct: 293 HHSMTLTPDEVKSLLLKYL-DCRPQDL 318
|
| >3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803} Length = 317 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 5e-04
Identities = 37/269 (13%), Positives = 69/269 (25%), Gaps = 83/269 (30%)
Query: 15 GMSKPSYKWQRVLLKVSGEAL---AGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71
GMS + V++ + G A+ + K A E+ + + G +V + G
Sbjct: 1 GMSAG----KTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGN 56
Query: 72 G----NIFRGASAAGNS----GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 123
G I AA L A G + M + + + P T
Sbjct: 57 GPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIG-YMMSQAMDNVFCANNEPANCVTCV 115
Query: 124 RMSEV-----------------------------------------------AEPYIRR- 135
+ V P
Sbjct: 116 TQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEI 175
Query: 136 ---RAVRHLEKGRVVIFAAGTGNP--------------FFTTDTAAALRCAEINAEVVLK 178
++ L V++ G D A +L +N++ ++
Sbjct: 176 VEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMI 235
Query: 179 ATNVDGVYDDNPRRNPNARLLDTLTYQEV 207
T+V + P+ R L+ + E+
Sbjct: 236 LTDVLNACINYK--KPDERKLEEIKLSEI 262
|
| >2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* Length = 310 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 8e-04
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV 207
D A+ ++A+ ++ T VD V + P+ + L +T E+
Sbjct: 210 DFASEKLAELVDADALVILTGVDYVCIN--YGKPDEKQLTNVTVAEL 254
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 267 | |||
| 3nwy_A | 281 | Uridylate kinase; allosterically activated form, A | 100.0 | |
| 3ek6_A | 243 | Uridylate kinase; UMPK unique GTP B site, alloster | 100.0 | |
| 1ybd_A | 239 | Uridylate kinase; alpha/beta/alpha fold, hexamer, | 100.0 | |
| 2a1f_A | 247 | Uridylate kinase; PYRH, structural genomics, PSI, | 100.0 | |
| 4a7w_A | 240 | Uridylate kinase; transferase; HET: GTP; 1.80A {He | 100.0 | |
| 1z9d_A | 252 | Uridylate kinase, UK, UMP kinase; structural genom | 100.0 | |
| 2va1_A | 256 | Uridylate kinase; UMPK, transferase, pyrimidine bi | 100.0 | |
| 2jjx_A | 255 | Uridylate kinase, UMP kinase; structural genomics, | 100.0 | |
| 2j4j_A | 226 | Uridylate kinase; transferase, nucleoside monophos | 100.0 | |
| 2brx_A | 244 | Uridylate kinase; UMP kinase, amino acid kinase, p | 100.0 | |
| 2j5v_A | 367 | Glutamate 5-kinase; proline biosynthesis, gamma gl | 100.0 | |
| 2ij9_A | 219 | Uridylate kinase; structural genomics, protein str | 100.0 | |
| 3ll9_A | 269 | Isopentenyl phosphate kinase; mevalonate biosynthe | 100.0 | |
| 2ako_A | 251 | Glutamate 5-kinase; structural genomics, PSI, prot | 100.0 | |
| 3ll5_A | 249 | Gamma-glutamyl kinase related protein; alternate m | 100.0 | |
| 2ogx_A | 276 | Molybdenum storage protein subunit alpha; open alp | 100.0 | |
| 2ap9_A | 299 | NAG kinase, acetylglutamate kinase, AGK; structura | 100.0 | |
| 2ogx_B | 270 | Molybdenum storage protein subunit beta; open alph | 100.0 | |
| 2rd5_A | 298 | Acetylglutamate kinase-like protein; protein-prote | 100.0 | |
| 2v5h_A | 321 | Acetylglutamate kinase; amino-acid biosynthesis, t | 100.0 | |
| 3k4o_A | 266 | Isopentenyl phosphate kinase; small molecule kinas | 100.0 | |
| 3d40_A | 286 | FOMA protein; fosfomycin, antibiotic resistance, k | 100.0 | |
| 3l76_A | 600 | Aspartokinase; allostery, ACT domains, kinase tran | 100.0 | |
| 3ab4_A | 421 | Aspartokinase; aspartate kinase, concerted inhibit | 100.0 | |
| 2bty_A | 282 | Acetylglutamate kinase; N-acetyl-L-glutamate kinas | 100.0 | |
| 2egx_A | 269 | Putative acetylglutamate kinase; struc genomics, N | 100.0 | |
| 2buf_A | 300 | Acetylglutamate kinase; acetyglutamate kinase, ADP | 100.0 | |
| 1gs5_A | 258 | Acetylglutamate kinase; carbamate kinase, amino ac | 100.0 | |
| 2we5_A | 310 | Carbamate kinase 1; arginine catabolism, arginine | 100.0 | |
| 2e9y_A | 316 | Carbamate kinase; transferase, structural genomics | 100.0 | |
| 3l86_A | 279 | Acetylglutamate kinase; ARGB, amino-acid biosynthe | 100.0 | |
| 1e19_A | 314 | Carbamate kinase-like carbamoylphosphate synthetas | 100.0 | |
| 2cdq_A | 510 | Aspartokinase; aspartate kinase, amino acid metabo | 100.0 | |
| 3c1m_A | 473 | Probable aspartokinase; allosteric inhibition, thr | 99.98 | |
| 3d2m_A | 456 | Putative acetylglutamate synthase; protein-COA-Glu | 99.98 | |
| 2j0w_A | 449 | Lysine-sensitive aspartokinase 3; feedback inhibit | 99.97 | |
| 3tvi_A | 446 | Aspartokinase; structural genomics, ACT domains, r | 99.97 | |
| 4axs_A | 332 | Carbamate kinase; oxidoreductase; 2.50A {Mycoplasm | 99.97 | |
| 3zzh_A | 307 | Acetylglutamate kinase; transferase, arginine bios | 99.97 | |
| 3kzf_A | 317 | Carbamate kinase; arginine dihydrolase pathway, gi | 99.96 | |
| 4ab7_A | 464 | Protein Arg5,6, mitochondrial; transferase, argini | 99.96 | |
| 3s6g_A | 460 | N-acetylglutamate kinase / N-acetylglutamate SYNT; | 99.96 | |
| 3s6k_A | 467 | Acetylglutamate kinase; synthase, transferase; 2.8 | 99.94 |
| >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-48 Score=341.42 Aligned_cols=236 Identities=52% Similarity=0.868 Sum_probs=206.3
Q ss_pred ccCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHH
Q 024480 18 KPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGML 97 (267)
Q Consensus 18 ~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (267)
....+++++|||+||++|++++ +.++.+.+.+++++|++++++|+++|||||||++++++.... .+++....++++++
T Consensus 45 ~~~~~~krIViKlGGs~L~~~~-~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~~-~gl~~~~~d~~g~l 122 (281)
T 3nwy_A 45 AQLSGYSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQ-LGMERTRSDYMGML 122 (281)
T ss_dssp --CCCCSEEEEEECGGGGGTTS-SSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTTT-TTCCHHHHHHHHHH
T ss_pred ccCCcCcEEEEEEchhhccCCC-CCCCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHHh-cCCCccchhHHHHH
Confidence 3445689999999999999766 578999999999999999999999999999999988874322 35776677889999
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEE
Q 024480 98 ATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVL 177 (267)
Q Consensus 98 ~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li 177 (267)
++++|+.+++++|.++|+++..|++++..++.++|++.+++++|++|+|||++++.|+++++||++|+++|.+|+||+|+
T Consensus 123 at~~n~~~l~~~L~~~Gi~a~~~~~~~~~~~~~~~~~~~~l~lL~~g~IpVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~Li 202 (281)
T 3nwy_A 123 GTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVL 202 (281)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESSCCGGGSEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecccccccccccchHHHHHHHHcCCeEEEECCCCCCCCCHHHHHHHHHHHcCCCEEE
Confidence 99999988999999999999889999988887777777766899999999999988889999999999999999999999
Q ss_pred EeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 178 KATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 178 ~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|+|||||||++||+.+|++++|+++++.|+.+.|.+.||+.|+..|.++|++++|+|+++|+.|.++|+|+.+||+|.
T Consensus 203 ilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 203 MAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp EEESSSSCBCC-----CCCCBCSEECHHHHHTTTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred EeeccCccccCCCCcCCCCeEcccccHHHHHHcCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 999999999999999999999999999998776777889999999999999999999999999999999999999996
|
| >3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-48 Score=335.79 Aligned_cols=234 Identities=50% Similarity=0.891 Sum_probs=208.9
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+++++|||+|||+|++++++.++.+.+++++++|++++++|+++|||||||++++++.. ...+++..+.++++++++++
T Consensus 8 ~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~-~~~g~~~~~~d~~g~l~t~~ 86 (243)
T 3ek6_A 8 SYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGL-AASGMDRVTGDHMGMLATVI 86 (243)
T ss_dssp SCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTT-SCSSSCHHHHHHHHHHHHHH
T ss_pred cCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH-HHcCCCCCCHHHHHHHHHHH
Confidence 47899999999999987766799999999999999999999999999999998655422 22457666678889999999
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 181 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTD 181 (267)
|+.++.++|.+.|+++..+++++...+.+++..+.+.++|++|+|||++|+.|.++++||++|+++|.+|+||+|+|+||
T Consensus 87 N~~~l~~al~~~G~~a~~~~~~~~~~v~~~~~~~~~~~lL~~g~IpVv~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTd 166 (243)
T 3ek6_A 87 NALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATK 166 (243)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCBTTTBEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHcCCCeEEechhhcCcccCcCCHHHHHHHHHCCcEEEEECCCCCCcCChHHHHHHHHHHcCCCEEEEEeC
Confidence 99888899999999999888887654444444455778999999999999888899999999999999999999999999
Q ss_pred cCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 182 VdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|||||++||+.+|++++|++++++|+.+.|.+.||++|+..|.++|++++|+|+++|+.+.++|+|+.+||+|.+
T Consensus 167 VdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 167 VDGVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp SSSCBSSCGGGCTTCCBCSEECHHHHHHHTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred CCccCCCCCCCCCCceecccccHHHHHhCCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 999999999999999999999999987777889999999999999999999999999999999999999999986
|
| >1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=331.54 Aligned_cols=234 Identities=52% Similarity=0.875 Sum_probs=208.7
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+++++|||||||++++++++.++.+.+.+++++|+.+++.|+++|||||||++++++. +..++++..+.+.++++++.+
T Consensus 6 ~~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~GgG~~~~g~~-~~~~~~~~~~~~~~~~~~~~~ 84 (239)
T 1ybd_A 6 KYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVS-AQAGSMDRATADYMGMMATVM 84 (239)
T ss_dssp SCSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH-HHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhchh-HHHcCCCCccHHHHHHHHHHH
Confidence 4689999999999997655578999999999999999999999999999999987764 122356666677888899999
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 181 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTD 181 (267)
|..++.++|.++|+++.++++.+..++.+.|.+.+.+++|+.|.|||++++.|.+++++|++|+++|.+|+||+|+||||
T Consensus 85 ~~~l~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ipVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~liilTd 164 (239)
T 1ybd_A 85 NALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATN 164 (239)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCBSSSCEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHHHHHcCCCeEEEeeecccccccchhHHHHHHHHhCCcEEEEECCccCCCCCcHHHHHHHHHhcCCCEEEEeeC
Confidence 99887899999999998888887766655555555558899999999999888889999999999999999999999999
Q ss_pred cCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 182 VdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|||||++||+.+|++++|++++++|+.++|.++||++|+++|.++|++++|+|+++|+.+.++|+|+..||+|.+
T Consensus 165 VdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~m~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 165 VDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 239 (239)
T ss_dssp SSSCBSSCGGGCTTCCBCSEEEHHHHHHTTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred CCccCCCCCCCCCCCeEccccCHHHHHHhcccccCHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence 999999999999999999999999998888899999999999999999999999999999999999989999964
|
| >2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-47 Score=331.61 Aligned_cols=235 Identities=45% Similarity=0.799 Sum_probs=203.3
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+++++|||||||++++++++.++.+.+.+++++|+.+++.|+++|||||||++++++. +..++++.++.+.++++++.+
T Consensus 7 ~~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~-~~~~g~~~~~~d~~~~~~~~~ 85 (247)
T 2a1f_A 7 IYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAK-LAKAGMNRVVGDHMGMLATVM 85 (247)
T ss_dssp SCSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHH-HHHTTCCHHHHHHHHHHHHHH
T ss_pred cccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchh-HHHcCCCCCcHHHHHHHHHHH
Confidence 4789999999999997544578999999999999999999999999999999977764 222457777788888899999
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 181 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTD 181 (267)
|..++.++|.++|+++.++++.+..++.++|.+.++.++|+.|.|||++|+.|.+++++|++|+++|.+|+||+|+||||
T Consensus 86 ~~~ll~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~liilTD 165 (247)
T 2a1f_A 86 NGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATK 165 (247)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHHTTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCCeEEecccccccccchhhHHHHHHHHhCCCEEEEeCCcCCCCCCcHHHHHHHHHhCCCCEEEEEeC
Confidence 99878899999999998898887766654566666678899999999999878889999999999999999999999999
Q ss_pred cCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 182 VdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
|||||++||+.+|++++|++++++|+.++|.++||++|+.+|.++|++++|+|+++|+.+.++++|+.+||+|...
T Consensus 166 VdGvy~~dP~~~p~a~~i~~i~~~e~~~~g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~ 241 (247)
T 2a1f_A 166 VDGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG 241 (247)
T ss_dssp SSSCBCC-------CCBCSEECHHHHHHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC
T ss_pred CCcccCCCCCCCCCCeEcccCCHHHHHHcCccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEeec
Confidence 9999999999999999999999999988888999999999999999999999999999999999999999999753
|
| >4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-47 Score=328.40 Aligned_cols=233 Identities=53% Similarity=0.848 Sum_probs=201.0
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCC-CCCChHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSG-LDRSSADYIGMLATV 100 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~-l~~~~~~~~~~~~~~ 100 (267)
+++++|||+|||+++++.++.++.+.+++++++|+++++.|+++|||||||++++++... ..| ++....+.+++++++
T Consensus 6 ~~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~~~-~~G~~~~~~~~~~~~la~~ 84 (240)
T 4a7w_A 6 KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAA-QGGIIRRTSGDYMGMLATV 84 (240)
T ss_dssp CCCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC----------CCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhHHH-hcCCCCCCCHHHHHHHHHH
Confidence 368999999999999755567899999999999999999999999999999998776532 245 555566788889999
Q ss_pred HHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEee
Q 024480 101 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 180 (267)
Q Consensus 101 ~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lT 180 (267)
+|+.+++++|.++|++++.+++.+.....+++..+.+.++|++|+|||++|+.|.++++||++|+++|.+|+||+|+|||
T Consensus 85 ~n~~l~~~~l~~~G~~av~lt~~d~~~~~~~~~~~~i~~lL~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lT 164 (240)
T 4a7w_A 85 INAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKAT 164 (240)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHHTTCEEEEESTTSCTTSCHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEecHHHcCcccCcCcHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHcCCCEEEEcc
Confidence 99999989999999999988877765443433334567899999999999988888999999999999999999999999
Q ss_pred ccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCC-CcceEEe
Q 024480 181 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-RVGTLIG 255 (267)
Q Consensus 181 DVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~-~~GT~I~ 255 (267)
||||||++||+.+|++++|++++++|+.+.|.++||++|+..|.++|++++|+|+++|+++.+++.|+ ++||.|.
T Consensus 165 dVdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i~ 240 (240)
T 4a7w_A 165 KVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK 240 (240)
T ss_dssp SSSSEESSCTTTCTTCCEESEECHHHHHHSSCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEEC
T ss_pred CCCceECCCCCCCCCCeEcceecHHHHHhcCccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceeeC
Confidence 99999999999999999999999999888889999999999999999999999999999999988876 5799983
|
| >1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=328.86 Aligned_cols=240 Identities=50% Similarity=0.835 Sum_probs=208.6
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+++++|||||||++++++++.++.+.+.+++++|+.+++.|+++|||||||+++.++. +.+.+++.++.+.++++++.+
T Consensus 6 ~~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~-~~~lg~~~~~~~~~~~~~~~~ 84 (252)
T 1z9d_A 6 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEP-AADAGMDRVQADYTGMLGTVM 84 (252)
T ss_dssp SCSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-HHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccch-HHHcCCCCCchHHHHHHHHHH
Confidence 4689999999999997544578999999999999999999999999999999876653 112357766777788889999
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEee-
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT- 180 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lT- 180 (267)
|..++.++|.++|+++.++++.+..++.++|++.++.++|+.|+|||++|+.|.+++++|++|+++|.+|+||+|+|+|
T Consensus 85 ~~~ll~~al~~~G~~~~~~~~~~~~~~~~~~~~~~~~~lL~~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilT~ 164 (252)
T 1z9d_A 85 NALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKN 164 (252)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSCBTTTBEECCHHHHHHHHHTTCEEEEESTTSCTTCCHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCCeEEEeccccccccCcchHHHHHHHHhCCCEEEEeCCcCCCCCChHHHHHHHHHhcCCCEEEEecC
Confidence 9987889999999999888887766554446666667889999999999987888999999999999999999999999
Q ss_pred ccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCCCC
Q 024480 181 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS 260 (267)
Q Consensus 181 DVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~~~ 260 (267)
||||||++||+.+|++++|++|++.|+.+.+.++||++|++.|.++|++++|+|+++|+.+.++|+|+..||+|.++.--
T Consensus 165 DVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~ 244 (252)
T 1z9d_A 165 GVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKVCD 244 (252)
T ss_dssp SCCSCBSSCTTTCTTCCBCSEEEHHHHHTTTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC---
T ss_pred CCCeeeCCCCCCCCCCeEeeEecHHHHHhccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCCCC
Confidence 99999999999999999999999999988888999999999999999999999999999999999999899999876554
Q ss_pred cc
Q 024480 261 TV 262 (267)
Q Consensus 261 ~~ 262 (267)
.+
T Consensus 245 ~~ 246 (252)
T 1z9d_A 245 EG 246 (252)
T ss_dssp --
T ss_pred Cc
Confidence 44
|
| >2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-47 Score=330.63 Aligned_cols=234 Identities=36% Similarity=0.642 Sum_probs=200.7
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHH
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLAT 99 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~ 99 (267)
.++++++|||+||+++++++++.++.+.+.+++++|++++ .|+++|||||||++++++. +..++++..+.+.++++++
T Consensus 21 ~~~~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~-~g~~vVlVhGgG~~~~~~~-~~~~g~~~~~~~~~~~l~~ 98 (256)
T 2va1_A 21 MMRKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKIS-KKYIVSIVLGGGNIWRGSI-AKELDMDRNLADNMGMMAT 98 (256)
T ss_dssp --CCSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHT-TTSEEEEEECCTTTCCHHH-HHHTTCCHHHHHHHHHHHH
T ss_pred hhhcCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEECCcHHhccch-HHHcCCCCCchhHHHHHHH
Confidence 3467899999999999986545789999999999999999 8999999999999977754 2224577666777888888
Q ss_pred HHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEe
Q 024480 100 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA 179 (267)
Q Consensus 100 ~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~l 179 (267)
.+|..++.++|.++|+++..+++++...+.++|++.++.++|+.|+|||++|..|.++++||++|+++|.+|+||+|+|+
T Consensus 99 ~~n~~l~~~~l~~~Gi~a~~~~~~t~~~~~~~~~~~~~~~lL~~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~Liil 178 (256)
T 2va1_A 99 IINGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMG 178 (256)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEESSCCTTTCEECCHHHHHHHHHTTCEEEEESTTSSSSCCHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEeeeecccccchhhHHHHHHHHhCCcEEEEECCCCCCCCChhHHHHHHHHhCCCCEEEEe
Confidence 99998878999999999988988887777666766666789999999999998788999999999999999999999999
Q ss_pred ec-cCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 180 TN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 180 TD-VdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|| |||||++||+.+|++++|++|+++|+.+++.++||++|+..|.++|++++|+|+++|+.+.++|+|+..||+|.
T Consensus 179 TD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 179 KNGVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp ESSCCSBCSCC--------CBSEEEHHHHHHHTCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred ecccCeEEcCCCCCCCCCEEccEEcHHHHHHhccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 99 99999999999999999999999998877778999999999999999999999999999999999998999996
|
| >2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=316.21 Aligned_cols=236 Identities=43% Similarity=0.744 Sum_probs=204.7
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+.+++|||||||++++++++.++.+.+++++++|+.+++.|+++|||||||++.+++. +..+++++...+.++++++.+
T Consensus 11 ~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~~~~~-~~~~g~~~~~~~~~~~~~~~~ 89 (255)
T 2jjx_A 11 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHL-AEEWGIDRVEADNIGTLGTII 89 (255)
T ss_dssp BCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-HHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHHhhhH-HHHcCCCCCChHHHhHHHHHH
Confidence 5689999999999997654678999999999999999999999999999999865553 222356655556778888889
Q ss_pred HHHHHHHHHHH-cCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEee
Q 024480 102 NAIFLQATMES-IGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 180 (267)
Q Consensus 102 ~~~l~~~~l~~-~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lT 180 (267)
|+.++.++|.+ +|+++.++++.+...+.+++....+.++|+.|+|||++|..|++++++|++|+++|.+|+||+|+|||
T Consensus 90 ~~~ll~~~l~~~~Gi~a~~l~~~~~~~v~~~~~~~~~~~lL~~g~IpVi~gg~g~~~vttD~~Aa~lA~~l~Ad~liilT 169 (255)
T 2jjx_A 90 NSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAK 169 (255)
T ss_dssp HHHHHHHHHHHHCSSCEEEEESSCCCSSSEECCHHHHHHHHHTTCEEEEESTTSCSSCCSHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHhhcCCceEEecHHHcCcccCcccHHHHHHHHhCCcEEEEeCCCCCCccchHHHHHHHHHhcCCCEEEEEe
Confidence 99878899999 99999888876655443344444555889999999999766678899999999999999999999999
Q ss_pred -ccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCC
Q 024480 181 -NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 181 -DVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
||||||++||+.+|++++|++|+++|+.++|.++|++.|++.+.++|++++|+|+++|+.+.++|.|+..||+|.++.
T Consensus 170 ~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~G~~~m~~~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~~ 248 (255)
T 2jjx_A 170 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDA 248 (255)
T ss_dssp SSCCSCBSSCTTTCSSCCBCSEEEHHHHHHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESSC
T ss_pred CCcCeeECCCCCCCCCCeEeeEecHHHHHHcCCccCHHHHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecCc
Confidence 999999999999999999999999999888999999999999988999999999999999999999988999998753
|
| >2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=296.02 Aligned_cols=214 Identities=25% Similarity=0.425 Sum_probs=184.2
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHH-hcCCCCCCChHHHHHHHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA-AGNSGLDRSSADYIGMLATVMN 102 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 102 (267)
+++|||||||+++++ +.+.+++++++|+.+++.|+++|||||||++++++.. +...++++.+.++++++++.+|
T Consensus 1 ~~iViK~GGs~l~~~-----~~~~~~~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 75 (226)
T 2j4j_A 1 MNIILKISGKFFDED-----NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLN 75 (226)
T ss_dssp CEEEEEECTHHHHTC-----CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEeccccccCC-----CHHHHHHHHHHHHHHHhCCCeEEEEECcchHhchhHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 379999999999864 5679999999999999889999999999999888522 2334577667788888999999
Q ss_pred HHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeecc
Q 024480 103 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 182 (267)
Q Consensus 103 ~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDV 182 (267)
+.+++++|.++|++. + .+ ..+.+.++|+.|.|||++| |.+++++|++|+++|.+|+||+|+|||||
T Consensus 76 ~~l~~~~l~~~g~~~---~-----~~----~~~~i~~ll~~g~ipVi~g--g~~~~~~D~~Aa~lA~~l~Ad~liilTdV 141 (226)
T 2j4j_A 76 AYLVMFSLQDLAYMH---V-----PQ----SLEEFIQDWSHGKVVVTGG--FQPGQSTAAVAALVAEASSSKTLVVATNV 141 (226)
T ss_dssp HHHHHHHHTTSBCSC---C-----CS----SHHHHHHHHTTSSBEEECC--CSTTSCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHHhCCCC---C-----cC----CHHHHHHHHHCCCEEEEcC--CCCCCCcHHHHHHHHHhcCCCEEEEeecc
Confidence 998888999999854 1 11 1234668899999999999 67899999999999999999999999999
Q ss_pred CccccCCCCCCCCcccccccCHHHHhhc----C--CC----cchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcce
Q 024480 183 DGVYDDNPRRNPNARLLDTLTYQEVTSK----D--LS----VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGT 252 (267)
Q Consensus 183 dGVy~~dP~~~~~a~li~~Is~~e~~~l----g--~g----~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT 252 (267)
||||++||+.+|++++|+++++.|+.++ | ++ .+|++|+.+|.++|++++|+|+++|+.+.++|+|+..||
T Consensus 142 dGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT 221 (226)
T 2j4j_A 142 DGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSS 221 (226)
T ss_dssp SSCBSSCTTTSSSCCBCSEEEHHHHHHHHC----------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCE
T ss_pred ceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCce
Confidence 9999999999999999999999998765 3 23 459999999999999999999999999999999999999
Q ss_pred EEec
Q 024480 253 LIGG 256 (267)
Q Consensus 253 ~I~~ 256 (267)
+|.+
T Consensus 222 ~i~~ 225 (226)
T 2j4j_A 222 IIEP 225 (226)
T ss_dssp EEEC
T ss_pred EEee
Confidence 9975
|
| >2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-42 Score=298.04 Aligned_cols=220 Identities=26% Similarity=0.400 Sum_probs=185.5
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhH-HhcCCCCCCChHHHHHHH
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGML 97 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~-~~~~~~l~~~~~~~~~~~ 97 (267)
+..+++++||||||+++++++ ++.+.+.+++++|+.+++ |+++|||||||++++++. .+...+++....+.++++
T Consensus 15 ~~~~~k~iViKlGGs~l~~~~---~~~~~i~~~~~~i~~l~~-g~~vViV~GgG~~~~~~~~~~~~~gl~~~~~~~~~~~ 90 (244)
T 2brx_A 15 PRGSHMRIVFDIGGSVLVPEN---PDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQ 90 (244)
T ss_dssp ----CCEEEEEECHHHHCSSS---CCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred hhhcccEEEEEechhhcCCCC---CCHHHHHHHHHHHHHHhC-CCeEEEEECccHHHhchHHHHHHcCCCcccHHHHHHH
Confidence 345578999999999998653 788999999999999999 999999999999988842 233356777677888889
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEE
Q 024480 98 ATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVL 177 (267)
Q Consensus 98 ~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li 177 (267)
++.+|+.+++++|.++|++. . . +..+.+.++|+.|+|||++| |.+++++|++|+++|.+|+||+|+
T Consensus 91 ~~~~~~~l~~~~l~~~g~~~---~-----~----~~~~~i~~lL~~g~IpVi~g--g~~~~~~D~~Aa~lA~~l~Ad~li 156 (244)
T 2brx_A 91 ITRANAMLLIAALREKAYPV---V-----V----EDFWEAWKAVQLKKIPVMGG--THPGHTTDAVAALLAEFLKADLLV 156 (244)
T ss_dssp HHHHHHHHHHHHHGGGBCSS---C-----B----CSHHHHHHHHHTTCBCEECC--CSTTCCHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCC---C-----c----CCHHHHHHHHhCCCEEEEcC--CCCCCCchHHHHHHHHHcCCCEEE
Confidence 99999998888899999754 1 1 11234568999999999999 778899999999999999999999
Q ss_pred EeeccCccccCCCCCCCCcccccccCHHHHhhc----CC-----CcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCC
Q 024480 178 KATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----DL-----SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE 248 (267)
Q Consensus 178 ~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l----g~-----g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~ 248 (267)
|||||||||++||+.+|++++|++|++.|+.++ |. +.+++.|++.+.+.+++++|+|+++|+.+.++|+|+
T Consensus 157 ilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~ 236 (244)
T 2brx_A 157 VITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGD 236 (244)
T ss_dssp EECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTC
T ss_pred EEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCC
Confidence 999999999999999999999999999988765 32 344888899999899999999999999999999999
Q ss_pred CcceEEec
Q 024480 249 RVGTLIGG 256 (267)
Q Consensus 249 ~~GT~I~~ 256 (267)
..||+|.+
T Consensus 237 ~~GT~i~~ 244 (244)
T 2brx_A 237 HNGTTIEP 244 (244)
T ss_dssp SSSEEECC
T ss_pred CCceEecC
Confidence 89999964
|
| >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=296.84 Aligned_cols=233 Identities=20% Similarity=0.303 Sum_probs=161.3
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCC--ChHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR--SSADYIGMLAT 99 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~--~~~~~~~~~~~ 99 (267)
+++++|||||||++++++ +.++.+.+.+++++|+.+++.|+++||||||| ++.++..++ ++. ...+..+++++
T Consensus 3 ~~k~iVIKiGGs~l~~~~-~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGg-i~~g~~~lg---~~~~~~~l~~~qa~aa 77 (367)
T 2j5v_A 3 DSQTLVVKLGTSVLTGGS-RRLNRAHIVELVRQCAQLHAAGHRIVIVTSGA-IAAGREHLG---YPELPATIASKQLLAA 77 (367)
T ss_dssp CCCEEEEEECHHHHTTTS-SSCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHHHHHHT---SCCCCSSHHHHHHHHH
T ss_pred CCCEEEEEECcHHhcCCC-CCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCH-HHHHHHHcC---CCCCCCCHHHHHHHHH
Confidence 468999999999999764 46899999999999999999999999999776 555666655 443 34455555543
Q ss_pred HH---HHHHHHHHHHHcCCCeeEeeccccccccc--hHHHH--HHHHHhhCCCEEEEeCC-----CCCCCCCcHHHHHHH
Q 024480 100 VM---NAIFLQATMESIGIPTRVQTAFRMSEVAE--PYIRR--RAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALR 167 (267)
Q Consensus 100 ~~---~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~--~~~~~--~l~~ll~~g~iPIi~g~-----~g~~~~~sD~~Aa~l 167 (267)
.. ...++.++|.++|+++. +...+..++.. .+++. .+.++|+.|.|||++++ .+..++|||++|+++
T Consensus 78 vGq~~l~~~~~~~l~~~G~~~~-qvllt~~d~~~~~r~~n~~~~i~~LL~~g~IPIv~end~v~~~el~~gd~D~lAa~v 156 (367)
T 2j5v_A 78 VGQSRLIQLWEQLFSIYGIHVG-QMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALA 156 (367)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEE-EEEECGGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCCGGGCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCceE-EEEEecccccCceEEEhHHHHHHHHHHCCCEEEECCCCceecccccCCCHHHHHHHH
Confidence 32 23456788999999986 55555555543 24443 35578999999999954 235689999999999
Q ss_pred HHhcCCcEEEEeeccCccccCCCCCCCCcccccccCH--HHHhhc--------CCCcc--hHHHHHHHHhCCCcEEEEcC
Q 024480 168 CAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTSK--------DLSVM--DMTAITLCQENNIPVVVFNL 235 (267)
Q Consensus 168 A~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~--~e~~~l--------g~g~m--k~~aa~~a~~~Gi~v~I~ng 235 (267)
|.+++||+|+|||||||||++||+.+|++++|+++++ +|+.++ |+++| |++|++.|.++|++++|+|+
T Consensus 157 A~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g 236 (367)
T 2j5v_A 157 AILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAG 236 (367)
T ss_dssp HHHHTCSEEEEEECC------------------------------------------CHHHHHHHHHHHHTTCEEEEEET
T ss_pred HHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcC
Confidence 9999999999999999999999999999999999999 776653 57789 77999999999999999999
Q ss_pred CCCCcHHHHhcCCCcceEEecCCCC
Q 024480 236 NQPGNIAKAIQGERVGTLIGGTWNS 260 (267)
Q Consensus 236 ~~~~~i~~~l~g~~~GT~I~~~~~~ 260 (267)
++|+.+.+++.|+..||+|.+...+
T Consensus 237 ~~~~~L~~~l~g~~~GT~i~~~~~~ 261 (367)
T 2j5v_A 237 SKPGVIGDVMEGISVGTLFHAQATP 261 (367)
T ss_dssp TSTTHHHHHHHTCCCSEEECCCSSC
T ss_pred CCchHHHHHhcCCCCcEEEEcCccc
Confidence 9999999999999999999876544
|
| >2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=277.44 Aligned_cols=209 Identities=33% Similarity=0.468 Sum_probs=174.5
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHH-hcCCCCCCChHHHHHHHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA-AGNSGLDRSSADYIGMLATVMN 102 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 102 (267)
+++|||||||+++++ .+.+.+++++|+.+++ |+++|||||||++++++.. +...++++.+.+.++++++.+|
T Consensus 1 ~~iViK~GGs~l~~~------~~~~~~~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ 73 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNE------SEKIREFAKTIESVAQ-QNQVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLN 73 (219)
T ss_dssp CEEEEEECSSTTTTC------HHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEeChhhhCCh------HHHHHHHHHHHHHHcC-CCEEEEEECcchHhcchHHHHHHcCCCccchHHHHHHHHHHH
Confidence 379999999999842 6789999999999998 9999999999999888421 2334677777888888999999
Q ss_pred HHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeecc
Q 024480 103 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 182 (267)
Q Consensus 103 ~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDV 182 (267)
..+++.+|+. ++. + . +...+.+.++|+.|.|||++| |.+++++|++|+++|.+|+||+|+|+|||
T Consensus 74 ~~l~~~~~~~-~~~---~-----~----~~~~~~i~~ll~~g~ipVi~~--g~~~~~~D~~Aa~lA~~l~Ad~li~lTdV 138 (219)
T 2ij9_A 74 AMLLISAIPS-AAK---K-----V----PVDFMEAEELSKLYRVVVMGG--TFPGHTTDATAALLAEFIKADVFINATNV 138 (219)
T ss_dssp HHHHHHHCTT-BCS---S-----C----CSSHHHHHHHHTTCSEEEECC--CSSSSCTHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHH-hcC---C-----C----cCCHHHHHHHHHCCCEEEEeC--CCCCCCchHHHHHHHHHcCCCeEEEeeCC
Confidence 9988766643 221 1 0 111234668999999999999 67889999999999999999999999999
Q ss_pred CccccCCCCCCCCcccccccCHHHHhhc----CC--C---cchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceE
Q 024480 183 DGVYDDNPRRNPNARLLDTLTYQEVTSK----DL--S---VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 253 (267)
Q Consensus 183 dGVy~~dP~~~~~a~li~~Is~~e~~~l----g~--g---~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~ 253 (267)
||||++||+.+|++++|+++++.|+.++ |. + .+|+.|++.+.+.+++++|+|+ +|+.+.++|+|+..||+
T Consensus 139 dGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~ 217 (219)
T 2ij9_A 139 DGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTV 217 (219)
T ss_dssp SSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEE
T ss_pred CceecCCCCCCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeE
Confidence 9999999999999999999999998765 32 3 3488999999999999999999 99999999999989999
Q ss_pred Ee
Q 024480 254 IG 255 (267)
Q Consensus 254 I~ 255 (267)
|.
T Consensus 218 i~ 219 (219)
T 2ij9_A 218 IA 219 (219)
T ss_dssp EC
T ss_pred eC
Confidence 84
|
| >3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=278.18 Aligned_cols=227 Identities=24% Similarity=0.315 Sum_probs=173.7
Q ss_pred cceEEEEeccccccCCC-CCC-CCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcCCCCCCCh-------HH
Q 024480 23 WQRVLLKVSGEALAGDH-TQN-IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSS-------AD 92 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~-~~~-~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~~~l~~~~-------~~ 92 (267)
.|++|||+||+++++++ +.. ++.+.+.+++++|+.++ +.++|||||||++++.+ .+. ++.... .+
T Consensus 2 ~k~iVIKlGG~~l~~~~~~~~~~~~~~l~~l~~~i~~l~--~~~~vlVhGGG~~~~~~~~~~---gi~~~~~~~~g~~~~ 76 (269)
T 3ll9_A 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNAS--PSSLMIVHGAGSFGHPFAGEY---RIGSEIENEEDLRRR 76 (269)
T ss_dssp -CCEEEEECHHHHEECCSSSCEECHHHHHHHHHHHHHHC--CSSEEEEECCGGGTHHHHHHH---TTTSCCCSHHHHHHH
T ss_pred CCEEEEEEChhheecCccccccccHHHHHHHHHHHHHhc--CCCEEEEECCcHHHHHHHHHc---CCCcccccCcccccc
Confidence 57899999999999876 356 89999999999999886 57999999999987654 233 343211 11
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHcCCCeeEeecccccccc--c-hHHH-HHHHHHhhCCCEEEEeCC-----C--C-C
Q 024480 93 YIGMLAT-----VMNAIFLQATMESIGIPTRVQTAFRMSEVA--E-PYIR-RRAVRHLEKGRVVIFAAG-----T--G-N 155 (267)
Q Consensus 93 ~~~~~~~-----~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~--~-~~~~-~~l~~ll~~g~iPIi~g~-----~--g-~ 155 (267)
+.++..+ .+|+. +.++|.++|+++.++++.+...+. + .+++ +.+.++|++|+|||++|+ . + .
T Consensus 77 ~~G~rvT~~~~~~ln~~-l~~~L~~~G~~a~~l~g~~~~~~~~g~v~~v~~~~i~~lL~~g~ipVi~~~~~~~~~~~g~~ 155 (269)
T 3ll9_A 77 RFGFALTQNWVKKLNSH-VCDALLAEGIPAVSMQPSAFIRAHAGRISHADISLIRSYLEEGMVPVVYGDVVLDSDRRLKF 155 (269)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHTTCCEEECCGGGTEEEETTEEEEECCHHHHHHHHTTCEEEEECEEEEBSCTTTSE
T ss_pred cchhhHHHHHHHHHHHH-HHHHHHHCCCcEEEEcchHcCeEecCeeeeecHHHHHHHHHCCCEEEECCCEEecccccCcc
Confidence 2333333 37775 567999999999988776543211 1 1122 346689999999999984 2 2 2
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc--------CCCcc--hHHHHHHHHh
Q 024480 156 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVM--DMTAITLCQE 225 (267)
Q Consensus 156 ~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l--------g~g~m--k~~aa~~a~~ 225 (267)
.++++|++|+++|.+|+||+|+|||||||||++||+.+|++++|+++++.|+.++ .+++| |+++|..+.+
T Consensus 156 ~~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~ 235 (269)
T 3ll9_A 156 SVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAE 235 (269)
T ss_dssp EEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHHHH
T ss_pred eecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999999999999999999887543 35678 9999999999
Q ss_pred CCCcEEEEcCCCCCcHHHHhcCCCc-ceEEe
Q 024480 226 NNIPVVVFNLNQPGNIAKAIQGERV-GTLIG 255 (267)
Q Consensus 226 ~Gi~v~I~ng~~~~~i~~~l~g~~~-GT~I~ 255 (267)
+|++++|+|++.|+.+.++|+|+.+ ||+|.
T Consensus 236 ~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 236 KGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp TTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred CCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 9999999999999999999999998 99997
|
| >2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-38 Score=273.77 Aligned_cols=224 Identities=16% Similarity=0.193 Sum_probs=174.6
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCC-ChHHHHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR-SSADYIGMLATVM 101 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 101 (267)
+|++|||+||++++ ++. +++.+.+++++++|+.+++. +++||||||| ...++..++ +.. +..+. ++++...
T Consensus 1 ~k~iViKlGGs~l~-~~~-~~~~~~~~~~~~~i~~l~~~-~~vVlVhgGg-~~~~~~~~g---~~~~~~~~~-~~l~~~~ 72 (251)
T 2ako_A 1 MKRIVVKVGSHVIS-EEN-TLSFERLKNLVAFLAKLMEK-YEVILVTSAA-ISAGHTKLD---IDRKNLINK-QVLAAIG 72 (251)
T ss_dssp -CEEEEEECHHHHB-CSS-SBCHHHHHHHHHHHHHHHHH-SEEEEEECCH-HHHHHHHCC---CCSSSHHHH-HHHHHHH
T ss_pred CCEEEEEeCcceeC-CCC-CCCHHHHHHHHHHHHHHHhC-CCEEEEECCH-HHHHHHHhC---CccCCchHH-HHHHHHH
Confidence 37899999999999 543 57889999999999999887 9999999877 444555554 332 23332 3344333
Q ss_pred HH---HHHHHHHHHcCCCeeEeeccccccccc--hHHHH-H-HHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHH
Q 024480 102 NA---IFLQATMESIGIPTRVQTAFRMSEVAE--PYIRR-R-AVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCA 169 (267)
Q Consensus 102 ~~---~l~~~~l~~~Gi~~~~~~~~~~~~~~~--~~~~~-~-l~~ll~~g~iPIi~g~~-----g~~~~~sD~~Aa~lA~ 169 (267)
+. .++.++|.++|+++. +...+..++.. .+++. . +..+|+.|+|||+++++ +..++++|++|+++|.
T Consensus 73 q~~l~~~~~~~l~~~G~~~~-~i~~~~~~~~~~~~~~~~~~~i~~ll~~g~ipVi~~~d~v~~~~~~~~~~D~~Aa~lA~ 151 (251)
T 2ako_A 73 QPFLISVYNELLAKFNKLGG-QILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATH 151 (251)
T ss_dssp HHHHHHHHHHHHGGGTCCEE-EEEECTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCCHHHHBTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEE-EEEeccchhcCcceEehHHHHHHHHHHCCCEEEEeCCCceeecceeecCchHHHHHHHH
Confidence 32 235678999999976 33333333322 23433 3 55789999999999642 2347899999999999
Q ss_pred hcCCcEEEEeeccCccccCCCCCCCCcccccccCHH--HHhhc--------CCCcc--hHHHHHHHHhCCCcEEEEcCCC
Q 024480 170 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ--EVTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQ 237 (267)
Q Consensus 170 ~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~--e~~~l--------g~g~m--k~~aa~~a~~~Gi~v~I~ng~~ 237 (267)
+|+||+|+|||||||||++||+.+|++++|+++++. |+.++ ++++| |++|+..|.++|++++|+|+++
T Consensus 152 ~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~ 231 (251)
T 2ako_A 152 FFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFD 231 (251)
T ss_dssp HTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred hcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 999999999999999999999999999999999998 76543 46777 8999999999999999999999
Q ss_pred CCcHHH--HhcCCCcceEEe
Q 024480 238 PGNIAK--AIQGERVGTLIG 255 (267)
Q Consensus 238 ~~~i~~--~l~g~~~GT~I~ 255 (267)
|+.+.+ +|+|+..||+|.
T Consensus 232 ~~~l~~~~~~~g~~~GT~i~ 251 (251)
T 2ako_A 232 LSVAKTFLLEDKQIGGTLFE 251 (251)
T ss_dssp CHHHHHHHHSCCCCSSEEEC
T ss_pred hhhhhhhHHhcCCCCceEeC
Confidence 999999 999998999984
|
| >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=275.69 Aligned_cols=222 Identities=19% Similarity=0.278 Sum_probs=172.6
Q ss_pred cceEEEEeccccccCCC-CCCCCHHHHHHHHHHHHHHHHCCCeEE-EEECCchHHhhh-HHhcCCCCCCCh--HHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGIEVA-IVVGGGNIFRGA-SAAGNSGLDRSS--ADYIGML 97 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~-~~~~~~~~l~~l~~~I~~l~~~g~~vV-iVhGgG~~~~~~-~~~~~~~l~~~~--~~~~~~~ 97 (267)
+|++|||+||+++++++ ++.++.+.+++++++|+. |+++| ||||||++++.+ .++ ++++.. .+...+.
T Consensus 3 ~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~----G~~vv~lVhGGG~~~~~~~~~~---gi~~~~~~~d~~gl~ 75 (249)
T 3ll5_A 3 FTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSFGHIKAMEF---GLPGPKNPRSSIGYS 75 (249)
T ss_dssp -CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT----CTTEEEEEECCGGGTHHHHHHH---TCSEECCHHHHHHHH
T ss_pred ceEEEEEECccEEecCcccccchHHHHHHHHHHHhc----CCceEEEEECccHHHHHHHHHh---CCCcCCCccccccHH
Confidence 78999999999999865 467899999999999975 89999 999999997763 333 455432 2333322
Q ss_pred H-----HHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCC----C--CCCCCcHHHHHH
Q 024480 98 A-----TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGT----G--NPFFTTDTAAAL 166 (267)
Q Consensus 98 ~-----~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~----g--~~~~~sD~~Aa~ 166 (267)
. ..+|+.++ ++|.++|+++.++++.+.....+. ..+.+.++|++|+|||++|+. + ..++++|++|++
T Consensus 76 ~t~~~~~~ln~~~v-~~l~~~G~~a~~l~~~~~~~~g~v-~~~~i~~ll~~g~ipVi~~~~~~~~~~~~~~~~~D~~Aa~ 153 (249)
T 3ll5_A 76 IVHRDMENLDLMVI-DAMIEMGMRPISVPISALRYDGRF-DYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMAD 153 (249)
T ss_dssp HHHHHHHHHHHHHH-HHHHHTTCCEEECCGGGSCBSSSB-CCHHHHHHHHTTCEEEEECEEEEEETTEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHCCCcEEEEcHHHcccccEE-cHHHHHHHHHCCCEEEECCCEEEcCCCceeeecHHHHHHH
Confidence 2 26777766 789999999998877665433332 113466899999999999741 1 246899999999
Q ss_pred HHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhh-----cCCCcc--hHHHHHHH-HhCCCcEEEEcCCCC
Q 024480 167 RCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS-----KDLSVM--DMTAITLC-QENNIPVVVFNLNQP 238 (267)
Q Consensus 167 lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~-----lg~g~m--k~~aa~~a-~~~Gi~v~I~ng~~~ 238 (267)
+|.+|+||+|+|+|||||||++||+.+|++++++++.. ++.. ..+|+| |+++|..+ .++|++++|+||++|
T Consensus 154 lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~~-~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~ 232 (249)
T 3ll5_A 154 MAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDT-NITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHP 232 (249)
T ss_dssp HHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEECC-CC-------------HHHHHHHHHHHTTCTTCEEEEETTSG
T ss_pred HHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHHH-HHhcccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCCh
Confidence 99999999999999999999999999999999999952 2221 246788 89999998 899999999999999
Q ss_pred CcHHHHhcCCCc-ceEEe
Q 024480 239 GNIAKAIQGERV-GTLIG 255 (267)
Q Consensus 239 ~~i~~~l~g~~~-GT~I~ 255 (267)
+++.+ |.|+.+ ||+|.
T Consensus 233 ~~l~~-l~g~~~~GT~i~ 249 (249)
T 3ll5_A 233 ERIGD-IGKESFIGTVIR 249 (249)
T ss_dssp GGGGG-TTSTTCCSEEEC
T ss_pred hHHHH-hCCCCCCCEEeC
Confidence 99999 999988 99984
|
| >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=272.33 Aligned_cols=216 Identities=24% Similarity=0.300 Sum_probs=177.1
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhc-CCCCCCChHHHHHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNA 103 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~ 103 (267)
++||||||| ++++ +.+.+.+++++|+.++ .|+++|||||||++++.+...+ ..+++....+.+++.++.+|.
T Consensus 41 ~iVIKiGGs-l~~~-----~~~~l~~l~~~I~~l~-~G~~vVlV~GGg~~~~~~~~~~~~~gl~~~~l~~v~~~~~~~n~ 113 (276)
T 2ogx_A 41 LQVVKIGGR-VMDR-----GADAILPLVEELRKLL-PEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNG 113 (276)
T ss_dssp EEEEEECHH-HHTT-----THHHHHHHHHHHHHHT-TTCEEEEEECCTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEChh-hcCC-----CHHHHHHHHHHHHHHh-CCCeEEEEECcHHHHHHHHhccCcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999 8853 2678999999999998 7999999999999877654332 145655556666666777888
Q ss_pred HHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCC-----C-----CCCCCcHHHHHHHHHhcCC
Q 024480 104 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGT-----G-----NPFFTTDTAAALRCAEINA 173 (267)
Q Consensus 104 ~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~-----g-----~~~~~sD~~Aa~lA~~l~A 173 (267)
.+++..+.+.|++.... ....+.+.++|++|+|||++|+. + .+++++|++|+++|.+|+|
T Consensus 114 ~l~~~ll~~~g~~~v~~----------~~~~~~i~~lL~~g~IpVi~~~~~~~~~e~~G~~~~~~~~D~~Aa~lA~~l~A 183 (276)
T 2ogx_A 114 HILAAMLASEGVSYVEH----------PTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGA 183 (276)
T ss_dssp HHHHHHHGGGTCCBCCH----------HHHHHHHHHHHHHSSEEEEESSCTTGGGCCSSSSSCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCcccc----------cChHHHHHHHHhCCCEEEEcCCcccccccccCCcCCCCChHHHHHHHHHHcCC
Confidence 87776666788864311 11123356889999999999952 1 2579999999999999999
Q ss_pred cEEEEeeccCccccCCCC--CCCCcccccccCHHHHhhc-CCCcchHHHHHHHH--hCCCcEEEEcCCCCCcHHHHhcCC
Q 024480 174 EVVLKATNVDGVYDDNPR--RNPNARLLDTLTYQEVTSK-DLSVMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGE 248 (267)
Q Consensus 174 d~Li~lTDVdGVy~~dP~--~~~~a~li~~Is~~e~~~l-g~g~mk~~aa~~a~--~~Gi~v~I~ng~~~~~i~~~l~g~ 248 (267)
|+|+|||||||||++||+ .+|++++|+++++.|+.++ ++++|++++...+. +.|++++|+|+++|+.+.++|.|+
T Consensus 184 d~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~ 263 (276)
T 2ogx_A 184 AGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGE 263 (276)
T ss_dssp SEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSCSCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTC
T ss_pred CEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHhCcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCC
Confidence 999999999999999998 8999999999999999887 78999777766655 568899999999999999999999
Q ss_pred CcceEEecC
Q 024480 249 RVGTLIGGT 257 (267)
Q Consensus 249 ~~GT~I~~~ 257 (267)
..||+|.++
T Consensus 264 ~~GT~i~~~ 272 (276)
T 2ogx_A 264 HVGTLIRTG 272 (276)
T ss_dssp CCSEEEECS
T ss_pred CCceEEccC
Confidence 899999865
|
| >2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=273.07 Aligned_cols=229 Identities=19% Similarity=0.214 Sum_probs=178.8
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCCC---h
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRS---S 90 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~~---~ 90 (267)
.++++++||||||++++ +.+.+..++++|+.+++.|+++|||||||++.+. +..++. .+++.. +
T Consensus 22 ~~~~k~iViKlGGs~l~-------~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~~~g~R~t~~~~ 94 (299)
T 2ap9_A 22 QLHGKVVVVKYGGNAMT-------DDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEGDFKGGFRVTTPEV 94 (299)
T ss_dssp HHTTCEEEEEECTHHHH-------SHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCCCCSSSSCCBCHHH
T ss_pred HhCCCeEEEEECchhhC-------CchHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCcccccCCcccCCHHH
Confidence 35678999999999998 4568889999999999999999999999986544 333331 122222 2
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHcCCCeeEeecccccccc-ch-------------H------HH-HHHHHHhhCCCEEE
Q 024480 91 ADYIGML-ATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-EP-------------Y------IR-RRAVRHLEKGRVVI 148 (267)
Q Consensus 91 ~~~~~~~-~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-~~-------------~------~~-~~l~~ll~~g~iPI 148 (267)
.+.+.++ ...++.. ++++|.++|+++..++..+...+. ++ | ++ +.+.++|++|+|||
T Consensus 95 l~~~~~~~~G~l~~~-l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpV 173 (299)
T 2ap9_A 95 LDVARMVLFGQVGRE-LVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPV 173 (299)
T ss_dssp HHHHHHHHHHTHHHH-HHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhhHHHHH-HHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHhCCCeEE
Confidence 3334443 2245665 568999999999887765532111 00 0 22 34568999999999
Q ss_pred EeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcc--hHH
Q 024480 149 FAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVM--DMT 218 (267)
Q Consensus 149 i~g~----~g~~~-~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~m--k~~ 218 (267)
++++ .|..+ +++|++|+++|.+|+||+|+|||||||||++||+ ++++|++|+++|+.++ ++|+| |++
T Consensus 174 v~~v~~~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl~ 250 (299)
T 2ap9_A 174 VSTLAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKVE 250 (299)
T ss_dssp EESEEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHHH
T ss_pred ECCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHHH
Confidence 9985 24444 5999999999999999999999999999999997 4789999999998764 78899 788
Q ss_pred HHHHHHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEEecCCC
Q 024480 219 AITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGTWN 259 (267)
Q Consensus 219 aa~~a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I~~~~~ 259 (267)
|+..+.++|++ ++|+|+++|+++ .++|+|++.||+|.++..
T Consensus 251 aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~~~ 293 (299)
T 2ap9_A 251 ACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRGEG 293 (299)
T ss_dssp HHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECCCS
T ss_pred HHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecCCC
Confidence 99999999998 999999999997 789999999999987653
|
| >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=265.18 Aligned_cols=225 Identities=20% Similarity=0.323 Sum_probs=172.0
Q ss_pred CCCccCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcC-CCCCCChHHH
Q 024480 15 GMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN-SGLDRSSADY 93 (267)
Q Consensus 15 ~~~~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~-~~l~~~~~~~ 93 (267)
.++..+|..+++|||+|||+++++ +.+.+.+++++|+.+++. +++|||||||.+++.+..++. .+++....+.
T Consensus 28 ~~~~~~~m~~~iVIKlGGs~l~~~-----~~~~~~~la~~I~~l~~~-~~vVlVhGGg~~~~~~~~~~~~~g~~~~~~~~ 101 (270)
T 2ogx_B 28 AAADFRILPDATVIKIGGQSVIDR-----GRAAVYPLVDEIVAARKN-HKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQ 101 (270)
T ss_dssp TSCCCCSSTTEEEEEECTTTTGGG-----CHHHHHHHHHHHHHHTTT-CEEEEEECCCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred ccchhhhccCeEEEEechHHhCCC-----CHHHHHHHHHHHHHHhcC-CcEEEEECChHHHHHHHHHHHhcCCChHHHHH
Confidence 344455655699999999999864 267899999999999876 899999999998876554331 3454333444
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCC------------CCCCCcH
Q 024480 94 IGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTG------------NPFFTTD 161 (267)
Q Consensus 94 ~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g------------~~~~~sD 161 (267)
..+.+..++..+++++|.++|++.. +..++. .+.++|++|+|||++|+.+ ++++++|
T Consensus 102 ~~~~a~G~~~l~~~~~l~~~G~~~v-----t~~d~~------~i~~lL~~g~ipVi~g~~g~~~~~~~~~~g~~~~~~~D 170 (270)
T 2ogx_B 102 LGSSVADQNAAMLGQLLAKHGIPVV-----GGAGLS------AVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTD 170 (270)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCCBC-----CSSTTC------HHHHHCTTCCEEEEECSCTTGGGCCCCSSSSSCSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcee-----cHhhHH------HHHHHHhCCCEEEEeCCccccccccccccccCCCCCcH
Confidence 4444444566666777888898732 112221 2567999999999998621 3569999
Q ss_pred HHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhcC-C-CcchHHHHHHH--HhCCCcEEEEcCCC
Q 024480 162 TAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKD-L-SVMDMTAITLC--QENNIPVVVFNLNQ 237 (267)
Q Consensus 162 ~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg-~-g~mk~~aa~~a--~~~Gi~v~I~ng~~ 237 (267)
++|+++|.+|+||+|+|+|||||||++||+.+|++++|++++++|+.++. . ..++......+ +..+++++|+|+++
T Consensus 171 ~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g~~~~ggm~~kl~aa~~~~~v~I~~g~~ 250 (270)
T 2ogx_B 171 AGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLV 250 (270)
T ss_dssp HHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCCCTTSCHHHHHHHHHCSSCCEEEEEETTS
T ss_pred HHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcCCCcccHHHHHHHHHhhcCCcEEEEeCCC
Confidence 99999999999999999999999999999999999999999999988762 1 23443222222 23577999999999
Q ss_pred CCcHHHHhcCCCcceEEec
Q 024480 238 PGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 238 ~~~i~~~l~g~~~GT~I~~ 256 (267)
|+.+.++|+|+..||+|.+
T Consensus 251 ~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 251 PGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp TTHHHHHHTTCCCSEEEEC
T ss_pred chHHHHHHcCCCCCeEecC
Confidence 9999999999999999975
|
| >2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=269.46 Aligned_cols=226 Identities=16% Similarity=0.301 Sum_probs=176.3
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-----CCCCC---Ch
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDR---SS 90 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-----~~l~~---~~ 90 (267)
.++.+++||||||++++ +.+.+.+++++|+.+++.|+++|||||||++.+.. ..++. .+++. .+
T Consensus 33 ~~~~k~iVIKlGGs~l~-------~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~~~g~R~t~~~~ 105 (298)
T 2rd5_A 33 KFRGKTIVVKYGGAAMT-------SPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATT 105 (298)
T ss_dssp HTTTCEEEEEECTHHHH-------CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHH
T ss_pred HhcCCEEEEEECchhhC-------ChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCccccCCcccCCHHH
Confidence 36688999999999998 45688999999999999999999999998876443 33331 11111 23
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHcCCCeeEeeccccc-----------cccc----hHHHH-HHHHHhhCCCEEEEeCC-
Q 024480 91 ADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMS-----------EVAE----PYIRR-RAVRHLEKGRVVIFAAG- 152 (267)
Q Consensus 91 ~~~~~~~~-~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-----------~~~~----~~~~~-~l~~ll~~g~iPIi~g~- 152 (267)
.+.++++. ..+|.. +...|.++|+++..+++.+.. |+.. .+++. .+.++|++|+|||++++
T Consensus 106 l~~~~~~~~G~~n~~-l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~ 184 (298)
T 2rd5_A 106 MEIVSMVLVGKVNKN-LVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVA 184 (298)
T ss_dssp HHHHHHHHHHTHHHH-HHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECGGGHHHHHHTTCEEEEESEE
T ss_pred HHHHHHHHhchHHHH-HHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECHHHHHHHHhCCCEEEEcCee
Confidence 45555543 345654 567999999998877654321 1110 11232 35679999999999984
Q ss_pred ---CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHHH
Q 024480 153 ---TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAIT 221 (267)
Q Consensus 153 ---~g~~~-~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa~ 221 (267)
.|..+ +++|++|+++|.+|+||+|+|+|||||||++||+ | +++|++|+++|+.++ ++++| |++|+.
T Consensus 185 ~~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~aa~ 261 (298)
T 2rd5_A 185 ADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCI 261 (298)
T ss_dssp ECTTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHHHHH
T ss_pred ECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHHHHH
Confidence 34444 5999999999999999999999999999999997 4 899999999988764 46778 789999
Q ss_pred HHHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEEec
Q 024480 222 LCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGG 256 (267)
Q Consensus 222 ~a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I~~ 256 (267)
.+.++|++ ++|+|++.|+.+ .++|+|+..||+|.+
T Consensus 262 ~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 262 RSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp HHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred HHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 99999998 999999999999 799999999999964
|
| >2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-36 Score=269.23 Aligned_cols=227 Identities=18% Similarity=0.280 Sum_probs=176.2
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-----CCCC---CCh
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLD---RSS 90 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-----~~l~---~~~ 90 (267)
.++++++|||+||++++ +.+.+.+++++|+.+++.|+++|||||||++.+.. ..++. .|++ +.+
T Consensus 46 ~~~~k~iVIKlGGs~l~-------~~~~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~~g~Rvt~~~~ 118 (321)
T 2v5h_A 46 QFAGRTVVVKYGGAAMK-------QEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADT 118 (321)
T ss_dssp HTTTCEEEEEECTHHHH-------SHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCBSSSSBCBCHHH
T ss_pred HhCCCeEEEEECchhhC-------CchHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCccccCCcccCCHHH
Confidence 36788999999999998 45688999999999999999999999999876543 33331 1121 123
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHcCCCeeEeeccccc----------cccc----hHHH-HHHHHHhhCCCEEEEeCC--
Q 024480 91 ADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMS----------EVAE----PYIR-RRAVRHLEKGRVVIFAAG-- 152 (267)
Q Consensus 91 ~~~~~~~~-~~~~~~l~~~~l~~~Gi~~~~~~~~~~~----------~~~~----~~~~-~~l~~ll~~g~iPIi~g~-- 152 (267)
.+.+++++ ..+|.. +..+|.++|+++..++..+.. ++.. ..++ +.+.++|++|+|||+++.
T Consensus 119 l~~~~~~~~G~in~~-l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~ 197 (321)
T 2v5h_A 119 MEVVEMVLVGRVNKD-IVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAA 197 (321)
T ss_dssp HHHHHHHHHHTHHHH-HHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEECGGGTHHHHHTTCEEEEESEEE
T ss_pred HHHHHHHHhChHHHH-HHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEecHHHHHHHHHCCCeEEEeCceE
Confidence 45555443 345664 567899999998776544321 2211 0122 235579999999999963
Q ss_pred --CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHHHH
Q 024480 153 --TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITL 222 (267)
Q Consensus 153 --~g~~~-~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa~~ 222 (267)
.|..+ +|+|++|+++|.+|+||+|+|+|||||||++||+ ++++|++|+++|+.++ ++++| |++|+..
T Consensus 198 ~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~Aa~~ 274 (321)
T 2v5h_A 198 DENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIR 274 (321)
T ss_dssp CTTSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHHHHHH
T ss_pred CCCCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHHHHHH
Confidence 33445 4999999999999999999999999999999997 5899999999988764 46789 7899999
Q ss_pred HHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEEecC
Q 024480 223 CQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGT 257 (267)
Q Consensus 223 a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I~~~ 257 (267)
|.++|++ ++|+|++.|+.+ .++|+++..||+|.++
T Consensus 275 a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~ 311 (321)
T 2v5h_A 275 SLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 311 (321)
T ss_dssp HHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred HHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence 9999998 999999999998 7899998899999864
|
| >3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=266.25 Aligned_cols=219 Identities=22% Similarity=0.233 Sum_probs=168.9
Q ss_pred eEEEEeccccccCCC-CCCCCHHHHHHHHHHHHHHHHCC------CeEEEEECCchHHhhh-HHhcCCCCCCC---hHHH
Q 024480 25 RVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLG------IEVAIVVGGGNIFRGA-SAAGNSGLDRS---SADY 93 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~-~~~~~~~~l~~l~~~I~~l~~~g------~~vViVhGgG~~~~~~-~~~~~~~l~~~---~~~~ 93 (267)
++|||+||++|++++ ++.++.+.+++++++|+++++.| .++|||||||++++.+ .+++ +.+. +.+.
T Consensus 8 ~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~i~~l~~~G~~~~~~~~vVlVhGGG~~~~~~~~~lg---i~~~~~~~~~~ 84 (266)
T 3k4o_A 8 LTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYL---KIEDGKKIFIN 84 (266)
T ss_dssp EEEEEECTTSSCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHGGGE---EECSSSEEECC
T ss_pred EEEEEEchHHeeCCCccCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEeCchHHHHHHHHHcC---CCcccCccccc
Confidence 699999999999865 46899999999999999998878 9999999999998773 4443 4443 1121
Q ss_pred --HHHHH-----HHHHHHHHHHHHHHcCCCeeEeeccccccccc-hHHH-HHHHHHhhCCCEEEEeCC-----C-CCCCC
Q 024480 94 --IGMLA-----TVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-PYIR-RRAVRHLEKGRVVIFAAG-----T-GNPFF 158 (267)
Q Consensus 94 --~~~~~-----~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~-~~~~-~~l~~ll~~g~iPIi~g~-----~-g~~~~ 158 (267)
.++.. ..+|+. +.++|.++|+++.++++.+...... .+++ +.+.++|++|+|||++++ . +..++
T Consensus 85 ~~~G~r~T~~a~~~ln~~-l~~~l~~~G~~a~~l~~~d~~~~~~g~~v~~~~i~~lL~~g~ipVi~~~~~~~~~g~~~~~ 163 (266)
T 3k4o_A 85 MEKGFWEIQRAMRRFNNI-IIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRII 163 (266)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHTTTCCEEEECGGGTCEESSSCBCCCHHHHHHHHTTCEEEEECEEEEESSSCEEEE
T ss_pred ccCceeHHHHHHHHHHHH-HHHHHHHCCCcEEEeeHHHcCcccCceEecHHHHHHHHHCCCEEEEeCCEEEcCCCCeeee
Confidence 22222 237776 5678999999999887765432210 1222 346689999999999984 1 24578
Q ss_pred CcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhh-----------cCCCcc--hHHHHHHHHh
Q 024480 159 TTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS-----------KDLSVM--DMTAITLCQE 225 (267)
Q Consensus 159 ~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~-----------lg~g~m--k~~aa~~a~~ 225 (267)
++|++|+++|.+|+||+|+|+||||||| .||+ ++++++..|+.+ .++|+| |++++..+.+
T Consensus 164 ~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~------~i~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~a~~ 236 (266)
T 3k4o_A 164 SGDDIVPYLANELKADLILYATDVDGVL-IDNK------PIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKC 236 (266)
T ss_dssp CHHHHHHHHHHHHTCSEEEEEESSSSSB-SSSS------BCSEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHcCCCEEEEEecCCeEE-eCCe------ecCcCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999 7775 455555432221 246778 8999988776
Q ss_pred CCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 226 NNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 226 ~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
+++|+|++.|+.+.++|+|+.+||+|.+.
T Consensus 237 ---~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 237 ---RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp ---EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred ---CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 99999999999999999999999999874
|
| >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-37 Score=271.83 Aligned_cols=229 Identities=16% Similarity=0.173 Sum_probs=166.1
Q ss_pred cceEEEEeccccccCCC-CCCCCHHHHHHHHHHHHHHHHCCC-eEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHH-H
Q 024480 23 WQRVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGI-EVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLA-T 99 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~-~~~~~~~~l~~l~~~I~~l~~~g~-~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~-~ 99 (267)
.+++||||||+++++++ ++.++.+.+.+++++|+.+++.|+ ++|||||||++++.+.. ..+++....+.....+ .
T Consensus 23 ~~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l~--~~~~~~~~~~~~~~vt~g 100 (286)
T 3d40_A 23 PDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIR--DHDSTHAFSLAGLTEATF 100 (286)
T ss_dssp CSEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC--------------CCTTHHHHHHHH
T ss_pred CCEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH--HcCCCcccchhcchhhHH
Confidence 45899999999999875 357899999999999999999898 79999999998766532 1233322211111111 2
Q ss_pred HHHHHHHHHHHHHcCCCeeEeeccccccc----cchHHHHHHHHHhhCCCEEEEeCCC-----CC-CCCCcHHHHHHHHH
Q 024480 100 VMNAIFLQATMESIGIPTRVQTAFRMSEV----AEPYIRRRAVRHLEKGRVVIFAAGT-----GN-PFFTTDTAAALRCA 169 (267)
Q Consensus 100 ~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~----~~~~~~~~l~~ll~~g~iPIi~g~~-----g~-~~~~sD~~Aa~lA~ 169 (267)
.++. .+.++|.++|+++..+.+.+.. + ......+.+.++|++|+|||++|+. +. +++++|++|+++|.
T Consensus 101 ~l~~-~l~~~l~~~G~~a~~l~~~~~~-~t~dg~~~~~~~~i~~lL~~g~IpVi~gd~~~~~~g~~~~~~~D~~Aa~lA~ 178 (286)
T 3d40_A 101 EVKK-RWAEKLRGIGVDAFPLQLAAMC-TLRNGIPQLRSEVLRDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLP 178 (286)
T ss_dssp HHHH-HHHHHHHHTTCCEEECCGGGTE-EEETTEEEECCSHHHHHHHTTCEEEEECEEEEBTTSCEEEECGGGHHHHTTT
T ss_pred HHHH-HHHHHHHHcCCcEEEEEeecCC-cccCCeEEehHHHHHHHHHCcCEEEEcCCeEEcCCCCEEeeCHHHHHHHHHH
Confidence 2343 3567899999998766543321 1 0000012356899999999999841 22 46999999999999
Q ss_pred h-cCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----------CCCcc--hHHHHHHHHhCCCcEEEEcC
Q 024480 170 E-INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----------DLSVM--DMTAITLCQENNIPVVVFNL 235 (267)
Q Consensus 170 ~-l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----------g~g~m--k~~aa~~a~~~Gi~v~I~ng 235 (267)
+ |+||+|+|+|||||||++||+ ++++|++|++.|+.++ ++++| |++|+..+.++|++++|+|+
T Consensus 179 ~~l~Ad~LiilTDVdGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g 255 (286)
T 3d40_A 179 MVEGRLRVVTLTDVDGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRG 255 (286)
T ss_dssp TCCSCEEEEEEESSSSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred hhCCCCEEEEecCCCeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHHHHHHHHHHCCCcEEEEeC
Confidence 9 999999999999999999998 7899999998753322 46888 78999999999999999999
Q ss_pred CCCCcHHHHhcC-----CCc-ceEEecCC
Q 024480 236 NQPGNIAKAIQG-----ERV-GTLIGGTW 258 (267)
Q Consensus 236 ~~~~~i~~~l~g-----~~~-GT~I~~~~ 258 (267)
++|+.+.++|.+ +++ ||.|....
T Consensus 256 ~~p~~l~~l~t~~~~~~~~~~~t~i~~~~ 284 (286)
T 3d40_A 256 DPGSDLEFLTAPFSSWPAHVRSTRITTTA 284 (286)
T ss_dssp CTTCCCGGGGSCGGGSCTTCCCEEEEC--
T ss_pred CCCCcHHHHhcCcccCcccccceeeeecc
Confidence 999999999999 776 99998643
|
| >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=283.26 Aligned_cols=219 Identities=22% Similarity=0.260 Sum_probs=176.7
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-cC--CCCCCChHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-GN--SGLDRSSADYIGMLA 98 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-~~--~~l~~~~~~~~~~~~ 98 (267)
|+++|+||||++++ +.+.+++++++|+++++.|+++|||||| |...+.+..+ .. ...+.+..+.+...+
T Consensus 1 m~~iViK~GGssl~-------~~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~~~~~~~~~~d~l~s~G 73 (600)
T 3l76_A 1 MALIVQKFGGTSVG-------TVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQISPNPCRREMDMLLSTG 73 (600)
T ss_dssp -CEEEEEECSGGGS-------SHHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CceEEEEeCCCCcC-------CHHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhhccCCCHHHHHHHHHHh
Confidence 57899999999998 5689999999999999999999999999 8776664432 11 111122334445567
Q ss_pred HHHHHHHHHHHHHHcCCCeeEeeccccccccchH--------HH-HHHHHHhhCCCEEEEeCCC-----C------CCCC
Q 024480 99 TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--------IR-RRAVRHLEKGRVVIFAAGT-----G------NPFF 158 (267)
Q Consensus 99 ~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~--------~~-~~l~~ll~~g~iPIi~g~~-----g------~~~~ 158 (267)
+.++..+++.+|+++|+++.++++++...+...+ ++ +.+.++|+.|.|||++||. | ..++
T Consensus 74 e~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~i~~ll~~g~IpVv~Gf~g~~~~g~~~~~tlgrG 153 (600)
T 3l76_A 74 EQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGKVVVVAGFQGISSVEHLEITTLGRG 153 (600)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-------CCEEEECCHHHHHTTTCEEEEECEEEC----CEEEECCCTT
T ss_pred HHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCCceeccccHHHHHHHHhCCCEEEEECCeecCCCCCEEEecCCCC
Confidence 7789999999999999999988876653221111 11 3356789999999998862 2 2356
Q ss_pred CcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcC
Q 024480 159 TTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNL 235 (267)
Q Consensus 159 ~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng 235 (267)
+||++|+++|.+|+||+|++||||||||++||+.+|++++|++++++|+.++ |.++|+++|+++|.++|+|++|.|+
T Consensus 154 gsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~a~~~a~~~gipv~I~n~ 233 (600)
T 3l76_A 154 GSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSS 233 (600)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHTCCEEEEET
T ss_pred ChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHHHHHHHHHCCCeEEEEEC
Confidence 7999999999999999999999999999999999999999999999998875 8999999999999999999999999
Q ss_pred CCCCcHHHHhcCCCcceEEecCC
Q 024480 236 NQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 236 ~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
+++ ..||+|.+..
T Consensus 234 ~~~----------~~GT~I~~~~ 246 (600)
T 3l76_A 234 WSD----------EPGTKVVAPP 246 (600)
T ss_dssp TCC----------SCCEEEECCC
T ss_pred CCC----------CCCeEEecCC
Confidence 864 4799998654
|
| >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=270.66 Aligned_cols=218 Identities=22% Similarity=0.313 Sum_probs=168.6
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC-CchHHhhhHHh-cC--CCCCCChHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG-GGNIFRGASAA-GN--SGLDRSSADYIGMLA 98 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG-gG~~~~~~~~~-~~--~~l~~~~~~~~~~~~ 98 (267)
|+++|+||||++++ +.+.+++++++|+.+++.|+++||||| +|.+.+.+... +. ...+.+..+.+.+.+
T Consensus 1 m~~iViK~GGssl~-------~~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~~~~~~~~d~~~a~G 73 (421)
T 3ab4_A 1 MALVVQKYGGSSLE-------SAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVPPAREMDMLLTAG 73 (421)
T ss_dssp -CEEEEEECSGGGS-------SHHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEChhHhC-------CHHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhccCCCHHHHHHHHHHH
Confidence 57899999999998 567999999999999999999999997 46665544322 11 112233455555677
Q ss_pred HHHHHHHHHHHHHHcCCCeeEeecccccccc-chH-------HH-HHHHHHhhCCCEEEEeCCC------CC----CCCC
Q 024480 99 TVMNAIFLQATMESIGIPTRVQTAFRMSEVA-EPY-------IR-RRAVRHLEKGRVVIFAAGT------GN----PFFT 159 (267)
Q Consensus 99 ~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-~~~-------~~-~~l~~ll~~g~iPIi~g~~------g~----~~~~ 159 (267)
+.++..++.++|+++|+++.++++.+...+. +++ ++ +.+.++|+.|.|||++|+. |. .+++
T Consensus 74 e~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~i~~~l~~g~ipVv~g~~g~~~~~g~~~tlgrg~ 153 (421)
T 3ab4_A 74 ERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALDEGKICIVAGFQGVNKETRDVTTLGRGG 153 (421)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECCCC-----------------CCHHHHHHHHHTTCEEEC------------------CC
T ss_pred HHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeeechhhHHHHHHHHhCCCEEEEeCCcCcCCCCCceEEeCCCC
Confidence 7888888889999999999887765542111 111 11 3456789999999999872 22 2459
Q ss_pred cHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCC
Q 024480 160 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLN 236 (267)
Q Consensus 160 sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~ 236 (267)
+|++|+++|.+|+||+|++||||||||++||+.+|++++|++|+++|+.++ |.+.||++|+.+|.++|+|++|.|++
T Consensus 154 sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~~~a~~~gi~v~I~n~~ 233 (421)
T 3ab4_A 154 SDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSY 233 (421)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcCCcCchHHHHHHHHHcCCCEEEecCc
Confidence 999999999999999999999999999999999999999999999998875 78889999999999999999999998
Q ss_pred CCCcHHHHhcCCCcceEEecC
Q 024480 237 QPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 237 ~~~~i~~~l~g~~~GT~I~~~ 257 (267)
+| ..||+|.++
T Consensus 234 ~~----------~~GT~I~~~ 244 (421)
T 3ab4_A 234 SN----------DPGTLIAGS 244 (421)
T ss_dssp SC----------CCCEEECSC
T ss_pred CC----------CCCeEEEec
Confidence 87 479999865
|
| >2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-35 Score=259.07 Aligned_cols=222 Identities=20% Similarity=0.251 Sum_probs=172.0
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCC---ChH
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDR---SSA 91 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~---~~~ 91 (267)
++++++||||||++++ +.+.+.+++++|+.+++.|+++|||||||++.+. +..++. .+++. .+.
T Consensus 19 ~~~~~iViKlGGs~l~-------~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~~~~~~~~g~r~t~~~~l 91 (282)
T 2bty_A 19 FYGKTFVIKFGGSAMK-------QENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEKTM 91 (282)
T ss_dssp HTTCEEEEEECSHHHH-------SHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCBSSSSBCBCHHHH
T ss_pred hcCCeEEEEECchhhC-------ChhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCCccccCCcccCCHHHH
Confidence 5578999999999998 4568899999999999999999999999986644 333331 12221 234
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHcCCCeeEeeccccc-----------cccc----hHHH-HHHHHHhhCCCEEEEeCC--
Q 024480 92 DYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMS-----------EVAE----PYIR-RRAVRHLEKGRVVIFAAG-- 152 (267)
Q Consensus 92 ~~~~~~~-~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-----------~~~~----~~~~-~~l~~ll~~g~iPIi~g~-- 152 (267)
+.++++. ..++.. ++++|.++|+++..+++.+.. ++.. .+++ +.+.++|++|.|||++++
T Consensus 92 ~~~~~~~~G~~~~~-l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~~~i~~ll~~g~IpVi~~v~~ 170 (282)
T 2bty_A 92 EIVEMVLVGKINKE-IVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGI 170 (282)
T ss_dssp HHHHHHHHHTHHHH-HHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEESEEE
T ss_pred HHHHHHHhhHHHHH-HHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecHHHHHHHHHCCCEEEECCCcc
Confidence 4444443 234554 668999999998877654321 1111 1233 335689999999999984
Q ss_pred --CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHHHH
Q 024480 153 --TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITL 222 (267)
Q Consensus 153 --~g~~~-~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa~~ 222 (267)
.|..+ +|+|++|+++|.+|+||+|+|||||||||++ | ++|++++++|+.++ .+++| |++|+..
T Consensus 171 ~~~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~-----~--~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~ 243 (282)
T 2bty_A 171 GEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD-----G--KLISTLTPDEAEELIRDGTVTGGMIPKVECAVS 243 (282)
T ss_dssp CSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET-----T--EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHH
T ss_pred CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC-----c--hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 23344 5999999999999999999999999999996 2 89999999998764 35678 8999999
Q ss_pred HHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEEecC
Q 024480 223 CQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGT 257 (267)
Q Consensus 223 a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I~~~ 257 (267)
+.++|++ ++|+|++.|+.+ .++|+++..||+|.++
T Consensus 244 a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 280 (282)
T 2bty_A 244 AVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL 280 (282)
T ss_dssp HHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred HHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence 9999998 999999999998 7899998899999865
|
| >2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-34 Score=253.67 Aligned_cols=225 Identities=17% Similarity=0.258 Sum_probs=172.8
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCC---Ch
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDR---SS 90 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~---~~ 90 (267)
.++++++|||+||+++++ .+.+..++++|+.+++.|+++|||||||++.+. +..++. .|++. .+
T Consensus 23 ~~~~k~iVIKlGGs~l~~-------~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~~g~rvt~~~~ 95 (300)
T 2buf_A 23 RFVGKTLVIKYGGNAMES-------EELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAAT 95 (300)
T ss_dssp HHTTCEEEEEECCTTTTS-------SHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCCBSSSSBCBCHHH
T ss_pred HhcCCeEEEEECchhhCC-------chHHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccccCCeecCCHHH
Confidence 356789999999999985 357889999999999999999999999987643 333331 12221 23
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHcCCCeeEeeccccc----------------------cccc----hHHHHH-HHHHhh
Q 024480 91 ADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMS----------------------EVAE----PYIRRR-AVRHLE 142 (267)
Q Consensus 91 ~~~~~~~~-~~~~~~l~~~~l~~~Gi~~~~~~~~~~~----------------------~~~~----~~~~~~-l~~ll~ 142 (267)
.+.+++++ ..++. .+++.|.++|+++..+++.+.. ++.. .+++.+ +.++|+
T Consensus 96 l~~~~~~~~G~~~~-~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~ 174 (300)
T 2buf_A 96 MDVVEMVLGGQVNK-DIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVK 174 (300)
T ss_dssp HHHHHHHHHHTHHH-HHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEECHHHHHHHHH
Confidence 45555543 23444 4668899999998776654221 1110 123434 557899
Q ss_pred CCCEEEEeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CC
Q 024480 143 KGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DL 212 (267)
Q Consensus 143 ~g~iPIi~g~----~g~~~-~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~ 212 (267)
+|.|||+++. .|..+ +++|++|+++|.+|+||+|+|+|||||||++ ++++|+++++.|+.++ ++
T Consensus 175 ~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ 248 (300)
T 2buf_A 175 GDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIY 248 (300)
T ss_dssp TTCEEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSC
T ss_pred CCCEEEEcCceeCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCC
Confidence 9999999963 33444 5999999999999999999999999999986 3789999999988765 46
Q ss_pred Ccc--hHHHHHHHHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEEecCC
Q 024480 213 SVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGTW 258 (267)
Q Consensus 213 g~m--k~~aa~~a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I~~~~ 258 (267)
++| |++|+..+.++|++ ++|+|++.|+.+ .++|+++..||+|.++.
T Consensus 249 ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~~ 298 (300)
T 2buf_A 249 GGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNRK 298 (300)
T ss_dssp TTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECCC
T ss_pred CccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeCC
Confidence 789 77999999999998 999999999998 68999988999998654
|
| >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=246.51 Aligned_cols=218 Identities=19% Similarity=0.190 Sum_probs=168.0
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEECCchHHhhhHH-hcC-----CCCCCChHHHH-
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI-EVAIVVGGGNIFRGASA-AGN-----SGLDRSSADYI- 94 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~-~vViVhGgG~~~~~~~~-~~~-----~~l~~~~~~~~- 94 (267)
|+++||||||++++ +.+.+.+++++|+.+.+.|. ++|||||+|++.+.+.. ++. .+++....+.+
T Consensus 2 m~~~ViK~GGs~l~-------~~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~~~~~glr~t~~~~l~ 74 (258)
T 1gs5_A 2 MNPLIIKLGGVLLD-------SEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQID 74 (258)
T ss_dssp CCCEEEEECGGGGG-------CHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCEETTEECBCHHHHH
T ss_pred CccEEEEEChhHhC-------ChHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCcceeCCEeeCCHHHHH
Confidence 56899999999998 46789999999999877655 59999999987765432 221 23332333444
Q ss_pred ---HHHHHHHHHHHHHHHHHHcCCCeeEeeccccccc------------cch-HHH-HHHHHHhhCCCEEEEeCC----C
Q 024480 95 ---GMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV------------AEP-YIR-RRAVRHLEKGRVVIFAAG----T 153 (267)
Q Consensus 95 ---~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~------------~~~-~~~-~~l~~ll~~g~iPIi~g~----~ 153 (267)
.++++.+|+.++ +.|.++|+++..+++.+...+ ++. .++ +.+.++|++|.|||++|+ .
T Consensus 75 ~~~~~l~~~~n~~l~-~~l~~~G~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g~~~~ 153 (258)
T 1gs5_A 75 IITGALAGTANKTLL-AWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDE 153 (258)
T ss_dssp HHHHHHHTHHHHHHH-HHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTT
T ss_pred HHHHHHhccchHHHH-HHHHHCCCCeEEEeecCCCEEEEEEcCCCCCCcCceeEECHHHHHHHHHCCCEEEEeCCcCCCC
Confidence 345667888777 478999999998876653211 100 112 346689999999999986 3
Q ss_pred CC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHHHHHH-
Q 024480 154 GN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQ- 224 (267)
Q Consensus 154 g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa~~a~- 224 (267)
|. .++++|++|+++|.+|+|| |+|||||||||++| +++|++++++|+.++ .+++| |+.++..++
T Consensus 154 g~~~~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~ 226 (258)
T 1gs5_A 154 GQLMNVNADQAATALAATLGAD-LILLSDVSGILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAAR 226 (258)
T ss_dssp SCEEECCHHHHHHHHHHHHTCE-EEEEESSSSCBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHH
T ss_pred CcEEEecHHHHHHHHHHHhCCc-EEEEeCCCceECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 33 3689999999999999999 99999999999975 579999999998765 36778 667776654
Q ss_pred hCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 225 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 225 ~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
+.+++++|+|+++|+.+.++|+|+..||+|.
T Consensus 227 ~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 227 TLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp HHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred hCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 5688999999999999999999999999996
|
| >2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=249.84 Aligned_cols=224 Identities=15% Similarity=0.202 Sum_probs=164.0
Q ss_pred cceEEEEeccccccCCCCCCCCH----HHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC---CCCCCChHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDP----KITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN---SGLDRSSADYI 94 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~----~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~---~~l~~~~~~~~ 94 (267)
++++|||+||++++++ ..+. +.+++++++|+.+++.|+++|||||||++.+.+ ..++. ...+..+.+.+
T Consensus 2 ~k~iVIKlGGs~l~~~---~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~~~~~~~~~~~~~~l~~~ 78 (310)
T 2we5_A 2 GKKMVVALGGNAILSN---DASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSEKNPAMPLDTC 78 (310)
T ss_dssp CCEEEEECCGGGGCCS---SCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTCSSSSCCCCHHHH
T ss_pred CcEEEEEEChHHhcCC---CCChHHHHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhHHHHHcCCCCCCCCCHHHHHHH
Confidence 4689999999999862 2343 789999999999999999999999999877653 23331 11233455555
Q ss_pred HHH-----HHHHHHHHHHHHHHHcCCCeeEee--------------------------cccc-----ccc------cchH
Q 024480 95 GML-----ATVMNAIFLQATMESIGIPTRVQT--------------------------AFRM-----SEV------AEPY 132 (267)
Q Consensus 95 ~~~-----~~~~~~~l~~~~l~~~Gi~~~~~~--------------------------~~~~-----~~~------~~~~ 132 (267)
.+. +..++.. +...|.+.|++....+ ..+. ..+ .+.|
T Consensus 79 ~a~~~G~l~~~i~~a-l~~~l~~~g~~~~v~~~l~~~~v~~~d~~f~~~~~~vg~~~t~~da~~l~~~~~~~~~~~~~~~ 157 (310)
T 2we5_A 79 VAMTQGSIGYWLSNA-LNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGW 157 (310)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHTTCCCCEEEBCCEEEECTTCHHHHSCCEEEEEEECHHHHHHHHTTTCCEEECTTSCE
T ss_pred HHHhhhHHHHHHHHH-HHHHHHhcCCchhhHhhhhhhcccccchhhcccCceeEEeccHHHHHHHHhccccccccCCcce
Confidence 432 2223322 4466888888641111 0010 001 0001
Q ss_pred ------------HHHH-HHHHhhCCCEEEEeCCCC-----------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccC
Q 024480 133 ------------IRRR-AVRHLEKGRVVIFAAGTG-----------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDD 188 (267)
Q Consensus 133 ------------~~~~-l~~ll~~g~iPIi~g~~g-----------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~ 188 (267)
++.+ +.++|++|+|||++|+.| ..++|+|++|+++|.+|+||+|+|+|||||||+
T Consensus 158 ~~vv~sp~~i~~v~~~~i~~lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~- 236 (310)
T 2we5_A 158 RKVVPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCI- 236 (310)
T ss_dssp EEEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEETTTTEECCCCCCHHHHHHHHHHHTTCSEEEEECSCSSCEE-
T ss_pred eeccCCcccceeehHHHHHHHHHCCCEEEEECCCCCCCcCCCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeCchHhhC-
Confidence 2333 557999999999995432 235899999999999999999999999999999
Q ss_pred CCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhCCC--cEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 189 NPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQENNI--PVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 189 dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~Gi--~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|| .+|++++|+++++.|+.++ ++|+| |++||..+.++|+ +++|++ ++.+.++|+|+..||+|.
T Consensus 237 dp-~~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 237 NY-GKPDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp ST-TSTTCEECCEEEHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBCCSEEEE
T ss_pred CC-CCCCCeECCEEcHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCCCCeEEe
Confidence 78 5889999999999988764 34778 8999999999999 799997 566888999988999996
|
| >2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=249.04 Aligned_cols=227 Identities=18% Similarity=0.191 Sum_probs=166.6
Q ss_pred cceEEEEeccccccCCCC-CC--CCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-CC-CCCChHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHT-QN--IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-SG-LDRSSADYIGM 96 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~-~~--~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-~~-l~~~~~~~~~~ 96 (267)
++++|||+||++++++++ .+ ++.+.+.+++++|+.+++.|+++|||||||.+.+.+ ..++. .. -++.+.+.+++
T Consensus 4 ~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~~~~~t~~~~l~~~~~ 83 (316)
T 2e9y_A 4 GRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEALPPERPRQPLYIATA 83 (316)
T ss_dssp CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHTSCTTSCCCCHHHHHH
T ss_pred CCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCCCCCCCCHHHHHHHHH
Confidence 468999999999996542 22 233799999999999999999999999999877643 33331 11 12344565544
Q ss_pred H-----HHHHHHHHHHHHHHHcCCCe--------eEeeccccc---------cc------------------cc------
Q 024480 97 L-----ATVMNAIFLQATMESIGIPT--------RVQTAFRMS---------EV------------------AE------ 130 (267)
Q Consensus 97 ~-----~~~~~~~l~~~~l~~~Gi~~--------~~~~~~~~~---------~~------------------~~------ 130 (267)
. +..++. .+.+.|.++|+++ ..++..+.. .+ .+
T Consensus 84 ~~~G~i~~~l~~-~l~~~l~~~g~~a~~~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r 162 (316)
T 2e9y_A 84 MTQAWIGLLLKH-SLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFR 162 (316)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHTTCCCCCCEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEE
T ss_pred HHHhHHHHHHHH-HHHHHHHhcCCCccccceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccce
Confidence 2 223444 4567888999985 223322210 00 00
Q ss_pred -----h----HHHHH-HHHHhhCCCEEEEeCCCC--------------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccc
Q 024480 131 -----P----YIRRR-AVRHLEKGRVVIFAAGTG--------------NPFFTTDTAAALRCAEINAEVVLKATNVDGVY 186 (267)
Q Consensus 131 -----~----~~~~~-l~~ll~~g~iPIi~g~~g--------------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy 186 (267)
+ .++.+ +.++|++|+|||++|++| ..++|+|++|+++|.+|+||+|+|+|||||||
T Consensus 163 ~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~~~~~g~~~g~~~~id~D~~Aa~lA~~l~Ad~LiilTdVdGVy 242 (316)
T 2e9y_A 163 RVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVA 242 (316)
T ss_dssp EEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEEECTTSCEEECSCCCCHHHHHHHHHHHTTCSEEEEEESSSSCE
T ss_pred ecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCeeECCCCCeecceeeeCHHHHHHHHHHHcCCCEEEEEeCchHhh
Confidence 0 02333 557899999999985422 12359999999999999999999999999999
Q ss_pred cCCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhCCC-cEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 187 DDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 187 ~~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~Gi-~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
+ ||+ +|++++|++++++|+.++ ++|+| |+++|..+.++|+ +++|+| ++.+.++|+| ..||+|.+
T Consensus 243 ~-dp~-~p~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 243 V-NYG-REGERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGS---LEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp E-TTT-STTCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEE---STTHHHHHTT-SSSEEEEC
T ss_pred C-CCC-CCCCcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECc---HHHHHHHHcC-CCCeEEec
Confidence 9 784 799999999999988764 35778 8999999999999 799987 5668899998 78999974
|
| >3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-32 Score=239.02 Aligned_cols=212 Identities=22% Similarity=0.285 Sum_probs=153.5
Q ss_pred CCCccCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCch-HHhhhHHhcC-----CCCCC
Q 024480 15 GMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-----SGLDR 88 (267)
Q Consensus 15 ~~~~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~-~~~~~~~~~~-----~~l~~ 88 (267)
.++.+.|+ |++|||+||+++++. +.+++++|+.|++.|+++|||||||+ +...+.+++. .|++.
T Consensus 29 ~~~~~~m~-k~iVIKiGGs~l~~~---------~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg~~~~~~~G~Rv 98 (279)
T 3l86_A 29 QMGRGSMK-DIIVIKIGGVASQQL---------SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQVPVKKINGLRV 98 (279)
T ss_dssp ------CC-CEEEEEECTTGGGSC---------CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEEC
T ss_pred ccccccCC-ceEEEEEChHHHHhH---------HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcCCCCccCCCccc
Confidence 35566665 799999999999842 46799999999999999999999986 4445555542 11111
Q ss_pred Ch---HHHHHH-HHHHHHHHHHHHHHHHcCCCeeEeeccccc-----cccc-hH--------HH-HHHHHHhhCCCEEEE
Q 024480 89 SS---ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMS-----EVAE-PY--------IR-RRAVRHLEKGRVVIF 149 (267)
Q Consensus 89 ~~---~~~~~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-----~~~~-~~--------~~-~~l~~ll~~g~iPIi 149 (267)
+. .+.+++ ++..+|.. +.++|.++|+++..+++.+.. ++.. .| ++ +.+.++|++|+|||+
T Consensus 99 td~~~l~~v~~~l~G~ln~~-i~~~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi 177 (279)
T 3l86_A 99 TSKDDMVLVSHALLDLVGKN-LQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINKRVIEEFLENRQIPIL 177 (279)
T ss_dssp BCHHHHHHHHHHHHHTTHHH-HHHHHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEECHHHHHHHHHTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhhHHHHHHHHhCCcEEEE
Confidence 11 222222 33345554 557999999999877655432 1110 11 23 335689999999999
Q ss_pred eCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hH
Q 024480 150 AAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DM 217 (267)
Q Consensus 150 ~g~----~g~~~-~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~ 217 (267)
+|. .|..+ +|+|++|+++|.+|+||+|+|+|||||||+ ++++|++++++|+.++ ++|+| |+
T Consensus 178 ~~v~~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl 250 (279)
T 3l86_A 178 ASLGYSKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKI 250 (279)
T ss_dssp ESEEECTTSCEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHH
T ss_pred CCcEECCCCCEeecCHHHHHHHHHHHcCCCEEEEEeCCCcccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHH
Confidence 983 23334 699999999999999999999999999995 3689999999887654 46888 89
Q ss_pred HHHHHHHhCCCc-EEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 218 TAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 218 ~aa~~a~~~Gi~-v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
+||..|.++|++ ++|+|++.+ ||+|..
T Consensus 251 ~aa~~a~~~Gv~~v~I~~~~~~------------GT~i~~ 278 (279)
T 3l86_A 251 ESAAKTVAAGVGQVLIGDNLLT------------GTLITA 278 (279)
T ss_dssp HHHHHHHHTTCSEEEEESSSSC------------SEEEEC
T ss_pred HHHHHHHHcCCCEEEEeccCCC------------CeEEec
Confidence 999999999998 999998742 899964
|
| >1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=244.34 Aligned_cols=227 Identities=19% Similarity=0.267 Sum_probs=161.8
Q ss_pred cceEEEEeccccccCCCC---CCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC---C-CCCCChHHHH
Q 024480 23 WQRVLLKVSGEALAGDHT---QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN---S-GLDRSSADYI 94 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~---~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~---~-~l~~~~~~~~ 94 (267)
++++|||+||++++++++ ..++.+.+++++++|+.+++.|+++|||||||++... +...+. . ..+..+.+..
T Consensus 2 ~k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~~~~~~~~~~l~~~ 81 (314)
T 1e19_A 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQATYGIPAQPMDVA 81 (314)
T ss_dssp CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_pred CCEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCccccCCCChhHHHHH
Confidence 478999999999996542 1245679999999999999999999999999875432 222210 0 1234455554
Q ss_pred HHH-----HHHHHHHHHHHHHHHcCCCe--------eEeecccc---------cc-------------c-----cc---h
Q 024480 95 GML-----ATVMNAIFLQATMESIGIPT--------RVQTAFRM---------SE-------------V-----AE---P 131 (267)
Q Consensus 95 ~~~-----~~~~~~~l~~~~l~~~Gi~~--------~~~~~~~~---------~~-------------~-----~~---~ 131 (267)
.+. +..++. ++.+.|.++|+++ ..++..+. +. . .+ .
T Consensus 82 ~a~~~G~i~~~l~~-~l~~~l~~~gi~a~~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~ 160 (314)
T 1e19_A 82 GAMSQGWIGYMIQQ-ALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRG 160 (314)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSC
T ss_pred HHHHhhHHHHHHHH-HHHHHHHHcCCchhhhhhheeeeecccchhhccccccccceecHHHhhhhhhhcCcccccccccc
Confidence 332 223433 3567889999985 22222220 00 0 00 0
Q ss_pred H------------HHHH-HHHHhhCCCEEEEeCCCC-------------CCCCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 024480 132 Y------------IRRR-AVRHLEKGRVVIFAAGTG-------------NPFFTTDTAAALRCAEINAEVVLKATNVDGV 185 (267)
Q Consensus 132 ~------------~~~~-l~~ll~~g~iPIi~g~~g-------------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGV 185 (267)
| ++.+ +.++|++|+|||++|+.| ..++|+|++|+++|.+|+||+|+|+||||||
T Consensus 161 ~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGv 240 (314)
T 1e19_A 161 WRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGA 240 (314)
T ss_dssp EEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred ccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeEECCCCcceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEE
Confidence 0 1233 568999999988874311 1358999999999999999999999999999
Q ss_pred ccCCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHH-HHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 186 YDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITL-CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 186 y~~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~-a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|++|| +|++++|++++++|+.++ ++|+| |+++|.. +.+.+++++|+|+ +.+.++|+| +.||+|.+
T Consensus 241 y~~~p--~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~---~~l~~~~~g-~~GT~i~~ 314 (314)
T 1e19_A 241 ALYYG--TEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEALEG-KTGTQVLP 314 (314)
T ss_dssp EETTT--STTCEECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEG---GGHHHHHTT-SSSEEEEC
T ss_pred ECCCC--CCCCeECCEECHHHHHHHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecH---HHHHHHHcC-CCCeEEcC
Confidence 99998 588999999999988764 35788 7788866 5556778999984 568899988 48999964
|
| >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=254.17 Aligned_cols=219 Identities=21% Similarity=0.266 Sum_probs=171.3
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-cC----------------
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-GN---------------- 83 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-~~---------------- 83 (267)
+++++|.||||+++. +.+.++++++.|.+. .++++|+|+|+ |.+.+.+..+ ..
T Consensus 25 ~~~~~V~KFGGTSva-------~~e~i~~va~iI~~~--~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~~~~~~~~~~~~ 95 (510)
T 2cdq_A 25 KGITCVMKFGGSSVA-------SAERMKEVADLILTF--PEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELS 95 (510)
T ss_dssp CCCCEEEEECTGGGS-------SHHHHHHHHHHHHHC--TTCCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCHHHH
T ss_pred CCCeEEEEECCcccC-------CHHHHHHHHHHHHhc--cCCCEEEEEcCCCCCchHHHHHHHHHhhccccchhHHHHHH
Confidence 356799999999998 678999999988643 34678888888 5333322111 00
Q ss_pred -------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc
Q 024480 84 -------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 126 (267)
Q Consensus 84 -------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~ 126 (267)
...+++..|.+.++++.+++.++..+|+++|+++.++++.+.+
T Consensus 96 ~i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~ 175 (510)
T 2cdq_A 96 IIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIG 175 (510)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTT
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHee
Confidence 1112234566677889999999999999999999988887652
Q ss_pred cc-----cc------hH--HHHHHHH-HhhCCCEEEEeCCCC----C------CCCCcHHHHHHHHHhcCCcEEEEeecc
Q 024480 127 EV-----AE------PY--IRRRAVR-HLEKGRVVIFAAGTG----N------PFFTTDTAAALRCAEINAEVVLKATNV 182 (267)
Q Consensus 127 ~~-----~~------~~--~~~~l~~-ll~~g~iPIi~g~~g----~------~~~~sD~~Aa~lA~~l~Ad~Li~lTDV 182 (267)
.+ .. .+ ..+.+.+ +++.|.|||++||.| + .+++||++|+++|.+|+|++|++||||
T Consensus 176 l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~TDV 255 (510)
T 2cdq_A 176 FITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDV 255 (510)
T ss_dssp CEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred EEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEeCC
Confidence 11 11 11 2234454 678999999998632 1 356799999999999999999999999
Q ss_pred CccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCC
Q 024480 183 DGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 183 dGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
||||++||+.+|++++|++|+|+|+.++ |.++||++|+.+|.++|+|++|.|+++|+ ..||+|.+..
T Consensus 256 dGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~---------~~GT~I~~~~ 325 (510)
T 2cdq_A 256 DGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPK---------APGTIITKTR 325 (510)
T ss_dssp SSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTT---------SCCEEEESCC
T ss_pred CCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCC---------CCCeEEeccc
Confidence 9999999999999999999999998876 88999999999999999999999999986 6799998753
|
| >3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=250.79 Aligned_cols=223 Identities=19% Similarity=0.237 Sum_probs=163.9
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCC---Ch
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDR---SS 90 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~---~~ 90 (267)
.++++++|||+||++++++ + +..++++|+.+++.|+++|||||||++.+. +..++. .|++. .+
T Consensus 40 ~~~~~~iViK~GG~~l~~~-------~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~ 111 (456)
T 3d2m_A 40 QMRGTTLVAGIDGRLLEGG-------T-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHYCRGLRVTDETS 111 (456)
T ss_dssp HHTTCEEEEEECGGGGTST-------H-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTTTCCCCCGGGCCCBCHHH
T ss_pred HhcCCEEEEEEChHHhcCc-------h-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHCCCCCEeeCCeecCCHHH
Confidence 3668899999999999853 2 789999999999999999999999987543 333321 11221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCe----eEeeccccc-------------ccc---c-hHHH-HHHHHHhhCCCEEE
Q 024480 91 ADYIGMLATVMNAIFLQATMESIGIPT----RVQTAFRMS-------------EVA---E-PYIR-RRAVRHLEKGRVVI 148 (267)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~l~~~Gi~~----~~~~~~~~~-------------~~~---~-~~~~-~~l~~ll~~g~iPI 148 (267)
.+.+++.+..++..+ .+.|. +|+++ +.+++.+.. |+. + .+++ +.+.++|++|.|||
T Consensus 112 l~~~~~~~G~~~~~l-~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~ipI 189 (456)
T 3d2m_A 112 LGQAQQFAGTVRSRF-EAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVW 189 (456)
T ss_dssp HHHHHHHHHHHHHHH-HHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhHHHHHH-HHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECHHHHHHHHHCCCeEE
Confidence 344444344556544 56787 88877 323222210 111 0 1233 33568999999999
Q ss_pred EeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcc--hHH
Q 024480 149 FAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVM--DMT 218 (267)
Q Consensus 149 i~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~m--k~~ 218 (267)
++++ .|. .++|+|++|+.+|.+|+||+|+|+|||||||++ ++++|++|++.|+.++ |.|+| |++
T Consensus 190 i~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~ 263 (456)
T 3d2m_A 190 MPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLIS 263 (456)
T ss_dssp ECSEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHH
T ss_pred ECCcccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHHH
Confidence 9974 233 458999999999999999999999999999985 4789999999988765 45778 889
Q ss_pred HHHHHHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEEecCC
Q 024480 219 AITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGTW 258 (267)
Q Consensus 219 aa~~a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I~~~~ 258 (267)
||..|.++|++ ++|+|++.|+.+ .++++++..||+|.++.
T Consensus 264 aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~~ 305 (456)
T 3d2m_A 264 SAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEA 305 (456)
T ss_dssp HHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECCC
T ss_pred HHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeeccc
Confidence 99999999996 999999999998 57788888999998654
|
| >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-31 Score=246.79 Aligned_cols=216 Identities=20% Similarity=0.208 Sum_probs=164.9
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcC------------------
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGN------------------ 83 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~------------------ 83 (267)
|+++|.||||+++. +.+.++++++.|.+ ...++|+|+|+ |.+.+.+..+..
T Consensus 2 m~~~V~KFGGTSv~-------~~e~i~~va~ii~~---~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~i~~i~~~~ 71 (449)
T 2j0w_A 2 SEIVVSKFGGTSVA-------DFDAMNRSADIVLS---DANVRLVVLSASAGITNLLVALAEGLEPGERFEKLDAIRNIQ 71 (449)
T ss_dssp -CCEEEEECSGGGS-------SHHHHHHHHHHHTS---CTTEEEEEECCCTTHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCccCC-------CHHHHHHHHHHHHh---cCCCEEEEeCCCCchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 67899999999998 67888898888854 33588888888 544333222110
Q ss_pred ----CCC--------------------------C--CChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecccc----cc
Q 024480 84 ----SGL--------------------------D--RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM----SE 127 (267)
Q Consensus 84 ----~~l--------------------------~--~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~----~~ 127 (267)
..+ . ++..|.+.+.++.++..++..+|+++|+++.++++.+. .+
T Consensus 72 ~~i~~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~l~t~~~ 151 (449)
T 2j0w_A 72 FAILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDR 151 (449)
T ss_dssp HHHHTTSSSTHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSC
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHheeecCC
Confidence 001 1 23346666788899999999999999999998887665 11
Q ss_pred cc--chH---HH---HHHH-HHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCC
Q 024480 128 VA--EPY---IR---RRAV-RHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 189 (267)
Q Consensus 128 ~~--~~~---~~---~~l~-~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~d 189 (267)
+. +.+ .. .+++ .++ .+.|||++||.+ ..+++||++|+++|.+|+||+|++||||||||++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~l~-~~~IpVv~Gf~g~~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~D 230 (449)
T 2j0w_A 152 FGRAEPDIAALAELAALQLLPRL-NEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTD 230 (449)
T ss_dssp TTSCCBCHHHHHHHHHHHTHHHH-HHSEEEEESSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSC
T ss_pred CCCccccHhHhHHHHHHHHHHHh-cCCEEEEeCCeeeCCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCC
Confidence 11 111 11 1222 344 445999998632 23567999999999999999999999999999999
Q ss_pred CCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCC
Q 024480 190 PRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 190 P~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
|+.+|++++|++++++|+.++ |.+.||++|+.+|.++|++++|.|+++|+ ..||+|.+..
T Consensus 231 Pr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~a~~~gi~v~I~~~~~p~---------~~GT~I~~~~ 293 (449)
T 2j0w_A 231 PRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPR---------AGGTLVCNKT 293 (449)
T ss_dssp TTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTT---------SCCEEEESCC
T ss_pred CCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHHHHHCCCeEEEEECCCCC---------CCeeEEeccc
Confidence 999999999999999998876 77888889999999999999999999986 6799998753
|
| >3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=242.24 Aligned_cols=211 Identities=20% Similarity=0.254 Sum_probs=159.2
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-ch-------HHhhhHHh-cC--CC-------
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GN-------IFRGASAA-GN--SG------- 85 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~-------~~~~~~~~-~~--~~------- 85 (267)
+|.|.|||||++. +.+.++++++.|.+ .+.++|+|.|+ |. ..+.+..+ .. .+
T Consensus 3 ~m~V~KFGGtSva-------~~e~i~~Va~iI~~---~~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~~~~~~~~ 72 (446)
T 3tvi_A 3 KIVVTKFGGSSLA-------DSNQFKKVKGIIDS---DANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNGIPFDDVF 72 (446)
T ss_dssp -CEEEEECGGGGS-------SHHHHHHHHHHHTT---CTTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred ccEEEEeCccccC-------CHHHHHHHHHHHHh---cCCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcCccHHHHH
Confidence 5799999999998 67889999988875 46788888888 62 32222111 00 00
Q ss_pred ---------------CC----------------CChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccc----
Q 024480 86 ---------------LD----------------RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE---- 130 (267)
Q Consensus 86 ---------------l~----------------~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~---- 130 (267)
++ .+..|++...++++++.+++.+|.+ .++++++......
T Consensus 73 ~~i~~~~~~i~~~L~~~~~~~~~l~~~~~~l~~~~~~D~lls~GE~lS~~lla~~l~a-----~~~~~~~~~~~~~~~~~ 147 (446)
T 3tvi_A 73 KLISQRYTEIVSELNIDMDIAYYLEKVKKNIENGASSDYAASRGEYLNGVILAKYLNA-----EFIDAAEVIFFDKSGCF 147 (446)
T ss_dssp HHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTC-----EECCGGGTCBBCC--CB
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCccHHHHHHhHHHHHHHHHHHHhcc-----eeECHHHheeeCCCCce
Confidence 10 0345667778999999999888753 3444443322211
Q ss_pred --hHHHHHHHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccc
Q 024480 131 --PYIRRRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 199 (267)
Q Consensus 131 --~~~~~~l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li 199 (267)
....+.+.++|+.|.|||++||.| ..+++||++|+++|.+|+|++|++||||||||++||+.+|++++|
T Consensus 148 ~~~~~~~~l~~~l~~~~v~Vv~Gf~g~~~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i 227 (446)
T 3tvi_A 148 DEKKSYEKIKEKVLSCNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTI 227 (446)
T ss_dssp CHHHHHHHHHHHTTTCSSEECCCSEEECTTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBC
T ss_pred ehHhhHHHHHHHHhcCCeEEeeCceecCCCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEc
Confidence 112244668899999999999732 245789999999999999999999999999999999999999999
Q ss_pred cccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCC
Q 024480 200 DTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 200 ~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
++++|+|+.++ |.++||++|+++|.++|||++|.|+++|+ ..||+|.+..
T Consensus 228 ~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~i~~~~ 280 (446)
T 3tvi_A 228 SKISYKELRELSYMGATVLHEEAIFPVKDSGIPINIKNTNKPS---------DPGTLILSDT 280 (446)
T ss_dssp SEEEHHHHHHTTTC----CCSTTTHHHHHSSCCEEEEETTBTT---------SCCEEEECTT
T ss_pred ceeCHHHHHHHHhCCCCcchHHHHHHHHHcCCeEEEecCCCCC---------CCCEEEecCC
Confidence 99999999886 78899999999999999999999999886 6799998754
|
| >4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-30 Score=229.36 Aligned_cols=229 Identities=19% Similarity=0.258 Sum_probs=154.8
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHH----hhhHHhcC--CCCCCChHH
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF----RGASAAGN--SGLDRSSAD 92 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~----~~~~~~~~--~~l~~~~~~ 92 (267)
...+||++|||+||++|++... ...+.++.++++|+.|.+.|+++|||||||++. ..+..++. .+.+..+.+
T Consensus 20 d~K~MkRIVIklGGnAL~~~~~--~q~~~~~~~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~~~~~~~~~~l~ 97 (332)
T 4axs_A 20 DDKHMSRIVIALGGNALGDNPS--QQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFA 97 (332)
T ss_dssp ------CEEEEECGGGGCSSHH--HHHHHTHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTTTTSCCCCCCHH
T ss_pred cccCcceEEEEEChhhcCCChH--HHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhccccCCCCCchhH
Confidence 4567889999999999975311 124677889999999999999999999998742 23333321 223333444
Q ss_pred HHHH-----HHHHHHHHHHHHHHHHcCCCeeEee-----cccccc--------------------------------ccc
Q 024480 93 YIGM-----LATVMNAIFLQATMESIGIPTRVQT-----AFRMSE--------------------------------VAE 130 (267)
Q Consensus 93 ~~~~-----~~~~~~~~l~~~~l~~~Gi~~~~~~-----~~~~~~--------------------------------~~~ 130 (267)
...+ .+..++.. +.+.|..+|+.....+ .++..| ..+
T Consensus 98 ~~~a~tqg~ig~~l~~~-l~~~l~~~gi~~~v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~~~~~~~~~~~~~ 176 (332)
T 4axs_A 98 EAGGMSQGYIGYHMLTA-ISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEANNPNSVIVEDAGR 176 (332)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHTTCCCCEEECCCEEEECTTCHHHHSCCEECSCCCC--------CTTSCCC-----
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCCcceeeeeeeeeecccchhhhCcCceeccccCHHHHHHHHhcCCEEEEccCC
Confidence 4332 22233333 3466777887532221 111111 000
Q ss_pred hH------------HHHH-HHHHhhCCCEEEEeCCC------------C-CCCCCcHHHHHHHHHhcCCcEEEEeeccCc
Q 024480 131 PY------------IRRR-AVRHLEKGRVVIFAAGT------------G-NPFFTTDTAAALRCAEINAEVVLKATNVDG 184 (267)
Q Consensus 131 ~~------------~~~~-l~~ll~~g~iPIi~g~~------------g-~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdG 184 (267)
.| ++.. +..++++|+|||..|.. | ..++|+|.+|+.+|.+++||+|+|+|||||
T Consensus 177 g~rrvV~sp~p~~ive~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~LiiLTdV~g 256 (332)
T 4axs_A 177 GFRKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDY 256 (332)
T ss_dssp ---CEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEEEECSCSS
T ss_pred CceEECCCCCCceeecHHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEEEEecCCc
Confidence 00 2233 45788999998865421 1 246999999999999999999999999999
Q ss_pred cccCCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhCCC--cEEEEcCCCCCcHHHHhcCCCcceEE
Q 024480 185 VYDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQENNI--PVVVFNLNQPGNIAKAIQGERVGTLI 254 (267)
Q Consensus 185 Vy~~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~Gi--~v~I~ng~~~~~i~~~l~g~~~GT~I 254 (267)
||+++|+ |++++|++++.+|+.++ ++|+| |++||..+.+.|. .++|.+ ++.+.++++|+ .||+|
T Consensus 257 v~~~~~~--~~~~~i~~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~---~~~~~~~l~g~-~GT~I 330 (332)
T 4axs_A 257 VYVDFNK--PTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIAD---LSKVEDALKGL-SGTKI 330 (332)
T ss_dssp CEESTTS--TTCEECSSCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEEC---STTHHHHTTTS-SSEEE
T ss_pred eEcCCCC--cchhhcccCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHCCC-CCcEE
Confidence 9998874 77899999999988754 46788 9999999988876 466654 56788999997 79999
Q ss_pred ec
Q 024480 255 GG 256 (267)
Q Consensus 255 ~~ 256 (267)
..
T Consensus 331 vA 332 (332)
T 4axs_A 331 IA 332 (332)
T ss_dssp BC
T ss_pred eC
Confidence 63
|
| >3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=226.34 Aligned_cols=218 Identities=15% Similarity=0.206 Sum_probs=160.6
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-----CCCCCC---hHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDRS---SADYI 94 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-----~~l~~~---~~~~~ 94 (267)
+++|||+||+++++ .+++++++|+.+++.|.++|||||||++.+.+ .+++. .|++.+ +.+.+
T Consensus 49 ~~iViK~GGsv~~~---------~~~~~~~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~~~~G~RvTd~~~l~vv 119 (307)
T 3zzh_A 49 QFAVIKVGGAIISD---------NLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVV 119 (307)
T ss_dssp CCEEEEECHHHHHH---------SHHHHHHHHHHHHHBTCCEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHHHH
T ss_pred CEEEEEEChHHhhc---------hHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHcCCCccccCCeecCCHHHHHHH
Confidence 78999999998863 26899999999999999999999999987654 33331 222222 23445
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEeecc--ccc-----ccc---c-hHHH-HHHHHHhhCCCEEEEeCC----CCC-CC
Q 024480 95 GMLATVMNAIFLQATMESIGIPTRVQTAF--RMS-----EVA---E-PYIR-RRAVRHLEKGRVVIFAAG----TGN-PF 157 (267)
Q Consensus 95 ~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~--~~~-----~~~---~-~~~~-~~l~~ll~~g~iPIi~g~----~g~-~~ 157 (267)
.+....+|..++ ++|.+.|+++.++++- ... ++. + ..++ +.+..+|++|+|||++|+ .|. .+
T Consensus 120 ~m~~~~vn~~lv-~~L~~~G~~Av~l~gg~~~a~~~~~~d~g~~G~i~~v~~~~i~~lL~~g~IpVi~~~g~~~~G~~~~ 198 (307)
T 3zzh_A 120 RKCFLEQNLKLV-TALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLN 198 (307)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCCEEEECSSSEEEEESCHHHHBSBEEEEEECCHHHHHHHHHTCEEEECCCEECTTCBEEB
T ss_pred HHHHHHHHHHHH-HHHHhCCCCeeEEcCCcEEEEecCccccCccccccccCHHHHHHHHHCCCEEEEeCCeECCCCcEEe
Confidence 454446787765 7899999999987641 111 110 0 0122 346689999999999985 232 35
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHH-Hhhc-----CCCcc--hHHHHHHHHh---C
Q 024480 158 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE-VTSK-----DLSVM--DMTAITLCQE---N 226 (267)
Q Consensus 158 ~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e-~~~l-----g~g~m--k~~aa~~a~~---~ 226 (267)
+++|++|+++|.+|+||+|+|+|||||||++ |++++|+++++.| +.++ .+|+| |+++++.|.+ .
T Consensus 199 i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa~~a~~~v~~ 273 (307)
T 3zzh_A 199 VNADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPR 273 (307)
T ss_dssp CCHHHHHHHHHHHHCCSEEEEECSSCSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHSCT
T ss_pred cCHHHHHHHHHHhCCCCEEEEEeCCcceecC-----CCCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999985 4689999999975 4332 46788 7776555544 4
Q ss_pred CCcEEEEcCCCCCcH-HHHhcCCCcceEEecCCC
Q 024480 227 NIPVVVFNLNQPGNI-AKAIQGERVGTLIGGTWN 259 (267)
Q Consensus 227 Gi~v~I~ng~~~~~i-~~~l~g~~~GT~I~~~~~ 259 (267)
|.+++|++ ++.+ .+++.+++.||+|.+..+
T Consensus 274 g~~v~I~~---~~~ll~elft~~g~GT~I~~~~~ 304 (307)
T 3zzh_A 274 SSSVAIIN---VQDLQKELFTDSGAGTMIRRGYK 304 (307)
T ss_dssp TCCEEEEC---GGGHHHHHHSCCCCSEEEECCC-
T ss_pred CeEEEEeC---ccHHHHHHhcCCCCcEEEecCCc
Confidence 88899998 7776 468889999999987543
|
| >3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-29 Score=220.98 Aligned_cols=227 Identities=17% Similarity=0.260 Sum_probs=160.2
Q ss_pred cceEEEEeccccccCCC-CCC--CCHHHHHHHHHHHHHHHHCCCeEEEEECCchHH----hhhHHhcCCCCCCChHHHHH
Q 024480 23 WQRVLLKVSGEALAGDH-TQN--IDPKITMAIAREVASVTRLGIEVAIVVGGGNIF----RGASAAGNSGLDRSSADYIG 95 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~-~~~--~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~----~~~~~~~~~~l~~~~~~~~~ 95 (267)
.|++||++||++|...+ +.+ ...+.++..+++|+.+.++|+++||+||+|++. .+...+. ...+..+.|.+.
T Consensus 5 ~~~ivvalgGnal~~~g~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~-~~~~~~pld~~~ 83 (317)
T 3kzf_A 5 GKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAA-GVSPEMPLHVCG 83 (317)
T ss_dssp CCEEEEECCSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTT-SSSCCCCHHHHH
T ss_pred CCEEEEEcChhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhcc-ccCCCCCccccC
Confidence 36899999999996422 112 245678899999999999999999999998643 2222121 123445666654
Q ss_pred -----HHHHHHHHHHHHHHHHHcCCCeeEeeccccc-----c---------------------cc-ch------------
Q 024480 96 -----MLATVMNAIFLQATMESIGIPTRVQTAFRMS-----E---------------------VA-EP------------ 131 (267)
Q Consensus 96 -----~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-----~---------------------~~-~~------------ 131 (267)
+++..++.. +.+.|..+|++....+..+.- | +. ++
T Consensus 84 A~sqG~igy~l~~a-l~~~l~~~g~~~~v~t~itq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~~~~~ed~grg 162 (317)
T 3kzf_A 84 AMSQGFIGYMMSQA-MDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRG 162 (317)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEECC--------------------------C
T ss_pred chhhHHHHHHHHHH-HHHHHHhcCCCCceeEEEEEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccCCeEeecCCCC
Confidence 344445332 457788889875544443321 0 00 00
Q ss_pred H------------HH-HHHHHHhhCCCEEEEeCCCC-------------CCCCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 024480 132 Y------------IR-RRAVRHLEKGRVVIFAAGTG-------------NPFFTTDTAAALRCAEINAEVVLKATNVDGV 185 (267)
Q Consensus 132 ~------------~~-~~l~~ll~~g~iPIi~g~~g-------------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGV 185 (267)
| ++ +.+..+|++|+|||++|+.| ..++|+|++|+.+|.+|+||+|+|+||||||
T Consensus 163 ~RrvV~sP~P~~iVe~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGV 242 (317)
T 3kzf_A 163 WRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNA 242 (317)
T ss_dssp CCCEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSC
T ss_pred eeeecCCCCCcceECHHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCee
Confidence 0 12 23557899999966653221 2368899999999999999999999999999
Q ss_pred ccCCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhCC-CcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 186 YDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 186 y~~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~G-i~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|+ ||+ +|++++|++++++|+.++ ++|+| |++||..+.+.| .+++|+|+ +.+.++|+|+ .||+|.+
T Consensus 243 y~-dp~-~p~a~~I~~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~---~~l~~~l~G~-~GT~I~~ 316 (317)
T 3kzf_A 243 CI-NYK-KPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNGK-CGTRIIK 316 (317)
T ss_dssp EE-SSS-CSSCEECCEEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCG---GGHHHHHTTS-SSEEEEC
T ss_pred eC-CCC-CCCCeECcCcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcch---HHHHHHHCCC-CCeEEec
Confidence 99 898 689999999999987754 35788 899999887654 57999995 5677999998 7999986
Q ss_pred C
Q 024480 257 T 257 (267)
Q Consensus 257 ~ 257 (267)
+
T Consensus 317 d 317 (317)
T 3kzf_A 317 D 317 (317)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=228.79 Aligned_cols=216 Identities=15% Similarity=0.194 Sum_probs=160.2
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-----CCCCCCh---HHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDRSS---ADYI 94 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-----~~l~~~~---~~~~ 94 (267)
+++|||+||+++++ .+++++++|+.++..|.++|||||||++.+.+ .+++. .|++.+. .+.+
T Consensus 49 ~~iVIK~GGsv~~~---------~l~~la~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~~G~RvTd~~tl~vv 119 (464)
T 4ab7_A 49 QFAVIKVGGAIISD---------NLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVV 119 (464)
T ss_dssp CCEEEEECHHHHHH---------CHHHHHHHHHHHHHTTCCCEEEECCCHHHHHHHHHTTCCCCEETTEECBCHHHHHHH
T ss_pred ceEEEEECHHHhhc---------hHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccccCCeecCCHHHHHHH
Confidence 78999999998874 25789999999999999999999999987664 33332 2333222 3445
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEeeccc--cc-----ccc---c-hHHH-HHHHHHhhCCCEEEEeCC----CCC-CC
Q 024480 95 GMLATVMNAIFLQATMESIGIPTRVQTAFR--MS-----EVA---E-PYIR-RRAVRHLEKGRVVIFAAG----TGN-PF 157 (267)
Q Consensus 95 ~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~--~~-----~~~---~-~~~~-~~l~~ll~~g~iPIi~g~----~g~-~~ 157 (267)
.++...+|..++ ++|.++|++++++++-- .. +++ + ..++ +.+..+|++|+|||++|+ .|. .+
T Consensus 120 ~mv~~~vn~~lv-~~L~~~G~~Avglsgg~~~a~~~~~~d~g~vG~I~~v~~~~I~~lL~~G~IPVi~~~g~~~~G~~~n 198 (464)
T 4ab7_A 120 RKCFLEQNLKLV-TALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLN 198 (464)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCCEEEECSSSEEEEESCTTTTBSBEEEEEECCHHHHHHHHTTCEEEEESEEECTTCBEEE
T ss_pred HHHHHHHHHHHH-HHHHhCCCCeEEECCCcEEEEecCccccCCcCcccccCHHHHHHHHHCCcEEEEcCCcCCCCCCEEE
Confidence 554446787654 78999999999876411 11 111 0 0123 346689999999999984 233 35
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHH-Hhhc-----CCCcc--hHHHHHHHHhC---
Q 024480 158 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE-VTSK-----DLSVM--DMTAITLCQEN--- 226 (267)
Q Consensus 158 ~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e-~~~l-----g~g~m--k~~aa~~a~~~--- 226 (267)
+++|++|+.+|.+|+|++|+|+|||||||++ |++++|+++++.| +.++ ++++| |+++++.|.+.
T Consensus 199 i~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~v~~ 273 (464)
T 4ab7_A 199 VNADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPR 273 (464)
T ss_dssp CCHHHHHHHHHHHHCCSEEEEEESSCSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTTSCT
T ss_pred ecHHHHHHHHHHHcCCCEEEEEecccccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999986 4689999999975 3332 46678 77777666654
Q ss_pred CCcEEEEcCCCCCcHH-HHhcCCCcceEEecC
Q 024480 227 NIPVVVFNLNQPGNIA-KAIQGERVGTLIGGT 257 (267)
Q Consensus 227 Gi~v~I~ng~~~~~i~-~~l~g~~~GT~I~~~ 257 (267)
|.+++|++ ++.+. +++.++++||+|.+.
T Consensus 274 g~~v~I~~---~~~ll~eLft~~g~GT~I~~~ 302 (464)
T 4ab7_A 274 SSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (464)
T ss_dssp TCEEEEEE---STTHHHHTTSSSTTSEEEECC
T ss_pred CcEEEEec---ChHHHHHHhcCCCCceEEecC
Confidence 77899998 55554 678889999999876
|
| >3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=231.09 Aligned_cols=218 Identities=18% Similarity=0.217 Sum_probs=165.3
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-----CCCCC---ChHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDR---SSADYI 94 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-----~~l~~---~~~~~~ 94 (267)
+++|||+||+++++ .+++++++|+.+++.|.++|||||||++.+.+ .+++. .|++. ...+.+
T Consensus 59 ~~iViK~GGsv~~~---------~l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~~G~RvTd~~~l~vv 129 (460)
T 3s6g_A 59 RFAVIKVGGAVIQD---------DLPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAADIPTERVDGLRVTRDEAMPII 129 (460)
T ss_dssp GSEEEEECHHHHHH---------CHHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHHSCCCCCCSSSCCBCTTTHHHH
T ss_pred CEEEEEEChHHhhh---------HHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCCccCCCHHHHHHH
Confidence 89999999997763 36899999999999999999999999977654 33332 23322 234544
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEeeccc--cc-----ccc---c-hHHH-HHHHHHhhCCCEEEEeCC----CCC-CC
Q 024480 95 GMLATVMNAIFLQATMESIGIPTRVQTAFR--MS-----EVA---E-PYIR-RRAVRHLEKGRVVIFAAG----TGN-PF 157 (267)
Q Consensus 95 ~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~--~~-----~~~---~-~~~~-~~l~~ll~~g~iPIi~g~----~g~-~~ 157 (267)
.+....+|..++ ++|.+.|+++.++++.. .. +++ + ..++ +.+..+|++|.|||++++ .|. .+
T Consensus 130 ~~~lg~vn~~lv-~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~p~g~~~~G~~~~ 208 (460)
T 3s6g_A 130 RDTLTQANLALV-DAIRDAGGRAAAVPRGVFEADIVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACLGETPDGTLVN 208 (460)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCCEEEECSSSEEEEESCTTTTBSEEEEEEECCHHHHHHHHTTCEEEEECEEECTTCCEEE
T ss_pred HHHHHHHHHHHH-HHHHhCCCCceEEecCeEEEEEecCcccCccCcceEEcHHHHHHHHHCCcEEEEECceECCCCcEEe
Confidence 443346787766 58999999999876521 11 110 0 0122 346689999999999964 233 35
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHH-HHhhc-----CCCcc--hHHHHHHHHhCCCc
Q 024480 158 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ-EVTSK-----DLSVM--DMTAITLCQENNIP 229 (267)
Q Consensus 158 ~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~-e~~~l-----g~g~m--k~~aa~~a~~~Gi~ 229 (267)
+++|++|+.+|.+|+||+|+|+|||||||++ ++++|++|+.. |+.++ ++|+| |++++..+.+.+.+
T Consensus 209 i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~ 282 (460)
T 3s6g_A 209 INADVAVRALVHALQPYKVVFLTGTGGLLDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIKRLLDDLPL 282 (460)
T ss_dssp ECHHHHHHHHHHHHCCSEEEEECSSCSCBCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHTSCT
T ss_pred cCHHHHHHHHHHHcCCCEEEEEeCCccccCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCCCc
Confidence 8999999999999999999999999999984 47899999985 55543 46788 89999888874446
Q ss_pred EEEEcCCCCCcHH-HHhcCCCcceEEecC
Q 024480 230 VVVFNLNQPGNIA-KAIQGERVGTLIGGT 257 (267)
Q Consensus 230 v~I~ng~~~~~i~-~~l~g~~~GT~I~~~ 257 (267)
++|++++.|+.+. +++.++++||+|.+.
T Consensus 283 v~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 283 SSSVSITRPSELARELFTHAGSGTLIRRG 311 (460)
T ss_dssp TCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred EEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence 9999999999987 678888999999876
|
| >3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-28 Score=227.84 Aligned_cols=218 Identities=18% Similarity=0.233 Sum_probs=162.2
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-----CCCCCCh---HHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDRSS---ADYI 94 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-----~~l~~~~---~~~~ 94 (267)
+++|||+||+++++ .+++++++|+.+++.|.++|||||||++.+.+ .+++. .|++.+. .+.+
T Consensus 62 ~~iViK~GG~v~~~---------~l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~~~gi~~~f~~G~RvTd~~~l~vv 132 (467)
T 3s6k_A 62 RFAVVKVGGAVLRD---------DLEALTSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEKQTVNGLRVTSPHALAIV 132 (467)
T ss_dssp TSCCCCCCHHHHTT---------CCHHHHHHHHHHHTTSCCCCCCCCCCHHHHHHHHTTSCCCCCCSSSCCBCHHHHHHH
T ss_pred cEEEEEEChHHhhh---------HHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCCccCCCHHHHHHH
Confidence 79999999997663 24789999999999999999999999977654 23331 2333222 3334
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEeecccc--c-----ccc---c-hHHH-HHHHHHhhCCCEEEEeC--C--CC-CCC
Q 024480 95 GMLATVMNAIFLQATMESIGIPTRVQTAFRM--S-----EVA---E-PYIR-RRAVRHLEKGRVVIFAA--G--TG-NPF 157 (267)
Q Consensus 95 ~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~--~-----~~~---~-~~~~-~~l~~ll~~g~iPIi~g--~--~g-~~~ 157 (267)
.+....+|..++ ++|.++|++++++++... . +.. + ..++ +.+..+|++|.|||+++ + .| ..+
T Consensus 133 ~~~~g~vn~~Lv-~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~pvg~~~~G~~~~ 211 (467)
T 3s6k_A 133 RKVFQASNLKLV-EALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNLAPIEASLQAGSIPVITSLGETPSGQILN 211 (467)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCCBCCCCSSSBCCCBSCSSSSBSBBCCCCBCCHHHHTHHHHTCBCCCCSCCCCSSSCCCB
T ss_pred HHHHHHHHHHHH-HHHHhCCCCceEEcCccEEEEeccCcccCccceEEEEcHHHHHHHHHCCCEEEEECceECCCCcEEe
Confidence 443346787766 588999999887665211 1 111 0 0123 34567999999999995 3 23 346
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHH-HHhhc-----CCCcc--hHHHHHHHHhCCCc
Q 024480 158 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ-EVTSK-----DLSVM--DMTAITLCQENNIP 229 (267)
Q Consensus 158 ~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~-e~~~l-----g~g~m--k~~aa~~a~~~Gi~ 229 (267)
+++|++|+.+|.+|+||+|+|+|||||||++ ++++|++++.. |+.++ ++|+| |++++..+.+.+.+
T Consensus 212 i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~ 285 (467)
T 3s6k_A 212 VNADFAANELVQELQPYKIIFLTGTGGLLDA------EGKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRLPL 285 (467)
T ss_dssp CCHHHHHHHHHHHHCCSSCCCCCSSCSCCCS------SCCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHHHHHTTSCS
T ss_pred cCHHHHHHHHHHhcCCCEEEEEecccceeCC------CCCCccccChHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Confidence 8999999999999999999999999999985 36889999875 44432 47788 89999888875446
Q ss_pred EEEEcCCCCCcHH-HHhcCCCcceEEecC
Q 024480 230 VVVFNLNQPGNIA-KAIQGERVGTLIGGT 257 (267)
Q Consensus 230 v~I~ng~~~~~i~-~~l~g~~~GT~I~~~ 257 (267)
+++++++.|+.+. +++.++++||+|.+.
T Consensus 286 ~~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 314 (467)
T 3s6k_A 286 ESSVSITRPADLAKELFTHKGSGTLVRRG 314 (467)
T ss_dssp SCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred EEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence 9999999999987 577888899999876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 267 | ||||
| d2a1fa1 | 236 | c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi | 1e-59 | |
| d1ybda1 | 236 | c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri | 2e-54 | |
| d1z9da1 | 238 | c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptoc | 3e-51 | |
| d2ij9a1 | 219 | c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog | 2e-46 | |
| d2brxa1 | 225 | c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc | 1e-37 | |
| d2cdqa1 | 304 | c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Ar | 8e-19 | |
| d2hmfa1 | 302 | c.73.1.3 (A:2-303) Aspartokinase {Methanococcus ja | 2e-17 | |
| d2j0wa1 | 292 | c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli | 2e-16 | |
| d2akoa1 | 250 | c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobact | 2e-15 | |
| d2btya1 | 282 | c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Th | 8e-05 | |
| d2ap9a1 | 291 | c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {My | 0.003 |
| >d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Haemophilus influenzae [TaxId: 727]
Score = 187 bits (475), Expect = 1e-59
Identities = 109/238 (45%), Positives = 165/238 (69%), Gaps = 3/238 (1%)
Query: 17 SKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 76
S+P YK R+LLK+SGEAL G+ IDP I +A E+ + +G+EV++V+GGGN+FR
Sbjct: 1 SQPIYK--RILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFR 58
Query: 77 GASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRR 136
GA +G++R D++GMLATVMN + ++ ++ + ++ +AF+++ + + Y
Sbjct: 59 GAKL-AKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSE 117
Query: 137 AVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA 196
A++ L + RVVIF+AGTGNPFFTTD+ A LR EI A+VVLKAT VDGVYD +P +NP+A
Sbjct: 118 AIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDA 177
Query: 197 RLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
+L L+Y EV K+L VMD++A TL +++ +P+ VFN+ +PG + + + G GT I
Sbjct: 178 KLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI 235
|
| >d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Neisseria meningitidis [TaxId: 487]
Score = 173 bits (439), Expect = 2e-54
Identities = 122/233 (52%), Positives = 172/233 (73%), Gaps = 1/233 (0%)
Query: 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 81
K++RVLLK+SGE+L G I+ + E+A V ++G++V IVVGGGNIFRG SA
Sbjct: 3 KYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSA- 61
Query: 82 GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 141
+DR++ADY+GM+ATVMNA+ L+ E++GI RVQ+A M ++AE Y R +A+++L
Sbjct: 62 QAGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYL 121
Query: 142 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 201
E+G+VVIFAAGTGNPFFTTDTAAALR AE+N +V+LKATNVDGVY +P+++P+A +T
Sbjct: 122 EEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYET 181
Query: 202 LTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
+T+ E K+L VMD TA LC+E + +VVF + + G++ + I GE GTL+
Sbjct: 182 ITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV 234
|
| >d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Streptococcus pyogenes [TaxId: 1314]
Score = 165 bits (419), Expect = 3e-51
Identities = 118/236 (50%), Positives = 167/236 (70%), Gaps = 2/236 (0%)
Query: 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 81
K+QR+L+K+SGEALAG+ ID AIA+E+A V G+++A+V+GGGN++RG A
Sbjct: 3 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRG-EPA 61
Query: 82 GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 141
++G+DR ADY GML TVMNA+ + +++ G+ TRVQTA M VAEPYIR RA+RHL
Sbjct: 62 ADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHL 121
Query: 142 EKGRVVIFAAGTGNPFFTTDTAAALRCAEI-NAEVVLKATNVDGVYDDNPRRNPNARLLD 200
EK R+V+F AG G+P+F+TDT AALR AEI +++ VDGVY+ +P+++ NA D
Sbjct: 122 EKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFD 181
Query: 201 TLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256
LT+ EV + L +MD TA TL +N+I +VVFN+N+ GNI + + GE +GT +
Sbjct: 182 ELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN 237
|
| >d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 153 bits (386), Expect = 2e-46
Identities = 71/240 (29%), Positives = 109/240 (45%), Gaps = 33/240 (13%)
Query: 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN 83
+V+L + G L+ + + A+ + SV + +V +VVGGG + R +A
Sbjct: 2 KVVLSLGGSVLSNE------SEKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARE 54
Query: 84 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 143
G + DYIG+ AT +NA+ L + + S P A +
Sbjct: 55 LGASETFCDYIGIAATRLNAMLLISAIPSAAKKV-------------PVDFMEAEELSKL 101
Query: 144 GRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT 203
RVV+ G P TTD AAL I A+V + ATNVDGVY +P+ + +A D L+
Sbjct: 102 YRVVVM--GGTFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLS 159
Query: 204 YQEVTSKDL---------SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
Q++ V+D+ A + + + I V P NI KA++GE VGT+I
Sbjct: 160 PQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL-GTPENIMKAVKGEAVGTVI 218
|
| >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Pyrococcus furiosus [TaxId: 2261]
Score = 130 bits (326), Expect = 1e-37
Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 28/240 (11%)
Query: 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN 83
R++ + G L + N D IA ++ V+ EVA+VVGGG + R A
Sbjct: 2 RIVFDIGGSVLVPE---NPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEK 57
Query: 84 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 143
+ D+IG+ T NA+ L A + V E + L+K
Sbjct: 58 FNSSETFKDFIGIQITRANAMLLIAALREK----------AYPVVVEDFWEAWKAVQLKK 107
Query: 144 GRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT 203
I G +P TTD AAL + A++++ TNVDGVY +P+++P A+ + +
Sbjct: 108 ----IPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMK 163
Query: 204 YQEVTS---------KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
+E+ SV+D A + + I +V ++ + I+G+ GT I
Sbjct: 164 PEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 223
|
| >d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 81.8 bits (201), Expect = 8e-19
Identities = 36/199 (18%), Positives = 62/199 (31%), Gaps = 36/199 (18%)
Query: 90 SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV--------------AEPYIRR 135
+ DY+ ++ A + +IG+ R AF + + +R
Sbjct: 115 TRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKR 174
Query: 136 RAVRHLEKGRVVIFAAGTGN----------PFFTTDTAAALRCAEINAEVVLKATNVDGV 185
+ V I G +D A + + + +VDGV
Sbjct: 175 LYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGV 234
Query: 186 YDDNPRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 242
+P A + LT+ E V+ ++ +E IPV V N P
Sbjct: 235 LTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNP---- 290
Query: 243 KAIQGERVGTLIGGTWNST 261
+ GT+I T + T
Sbjct: 291 -----KAPGTIITKTRDMT 304
|
| >d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Score = 77.6 bits (190), Expect = 2e-17
Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 31/188 (16%)
Query: 89 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE----------PYIRRRAV 138
S DYI +++ L + +G + + + ++ R +
Sbjct: 119 KSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLL 178
Query: 139 RHLEKGRVVIFAAGTGN---------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 189
L++G + + G +D +AAL ++A+++ T+V GVY +
Sbjct: 179 PLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTD 238
Query: 190 PRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 246
PR P AR + L+Y E V+ I E IP++V N +P
Sbjct: 239 PRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEP-------- 290
Query: 247 GERVGTLI 254
E GTLI
Sbjct: 291 -ESEGTLI 297
|
| >d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Score = 75.3 bits (184), Expect = 2e-16
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 156 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV---TSKDL 212
+D AAL ++A V T+V G+Y +PR A+ +D + + E +
Sbjct: 195 GRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGA 254
Query: 213 SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254
V+ + ++IPV V + P GTL+
Sbjct: 255 KVLHPATLLPAVRSDIPVFVGSSKDP---------RAGGTLV 287
|
| >d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Glutamate 5-kinase species: Campylobacter jejuni [TaxId: 197]
Score = 71.3 bits (173), Expect = 2e-15
Identities = 37/251 (14%), Positives = 87/251 (34%), Gaps = 24/251 (9%)
Query: 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG--GNIFRGASAAG 82
R+++KV ++ ++T + + + +A + EV +V
Sbjct: 2 RIVVKVGSHVISEENT--LSFERLKNLVAFLAKLME-KYEVILVTSAAISAGHTKLDIDR 58
Query: 83 NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 142
+ +++ IG + L A +G + S A + + +
Sbjct: 59 KNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMIN 118
Query: 143 KGRVVIFA-----AGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNAR 197
G + I A F D+ +A +A++++ +++DG YD NP +A+
Sbjct: 119 LGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAK 178
Query: 198 LLDTLTYQEVTSKDLSVMDMT------------AITLCQENNIPVVVFNLNQPGNIAKAI 245
L+ +T+ + ++ + A E+N + + + +
Sbjct: 179 RLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFL 238
Query: 246 QGER--VGTLI 254
++ GTL
Sbjct: 239 LEDKQIGGTLF 249
|
| >d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Thermotoga maritima [TaxId: 2336]
Score = 40.9 bits (95), Expect = 8e-05
Identities = 39/266 (14%), Positives = 77/266 (28%), Gaps = 39/266 (14%)
Query: 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG-------- 72
+ + ++K G A+ A +++ + GI+ IV GGG
Sbjct: 19 FYGKTFVIKFGGSAM-------KQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMK 71
Query: 73 ------NIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 126
G ++ +G + + ++GI +
Sbjct: 72 DLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAE 131
Query: 127 EVAEPYIRRRAVRH-----------LEKGRVVIFAAGTGNPFF-----TTDTAAALRCAE 170
+ + + +E + + A DTAAA
Sbjct: 132 KETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKS 191
Query: 171 INAEVVLKATNVDGVYDD-NPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIP 229
+ AE ++ T+VDGV D + L + + A++ +
Sbjct: 192 LMAEKLILLTDVDGVLKDGKLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGA 251
Query: 230 VVVFNLNQPGNIAKAI-QGERVGTLI 254
V + N I I + +GT+I
Sbjct: 252 VHIINGGLEHAILLEIFSRKGIGTMI 277
|
| >d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.0 bits (82), Expect = 0.003
Identities = 47/273 (17%), Positives = 83/273 (30%), Gaps = 46/273 (16%)
Query: 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG-------- 72
+ V++K G A+ D + A A ++A + GI +V GGG
Sbjct: 23 LHGKVVVVKYGGNAM-------TDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLR 75
Query: 73 ---------NIFRGASAAGNSGLDRSSADYIGM----LATVMNAIFLQATMESIGIPTRV 119
FR + +G L + T E + T V
Sbjct: 76 RLGIEGDFKGGFRVTTPEVLDVARMVLFGQVGRELVNLINAHGPYAVGITGEDAQLFTAV 135
Query: 120 QTAFRMSEVAEPYIRRRAVRH---------LEKGRVVIFAAGTGNPFF-----TTDTAAA 165
+ + + VA V + GR+ + + + DTAAA
Sbjct: 136 RRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAA 195
Query: 166 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMD---MTAITL 222
+ AE +L T++DG+Y P R+ +DT T ++ M +
Sbjct: 196 AVAEALGAEKLLMLTDIDGLYTRWPDRDSLVSEIDTGTLAQLLPTLELGMVPKVEACLRA 255
Query: 223 CQENNIPVVVFNLNQPGNIAKAI-QGERVGTLI 254
+ + + + GT +
Sbjct: 256 VIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKV 288
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 267 | |||
| d1ybda1 | 236 | Uridylate kinase PyrH {Neisseria meningitidis [Tax | 100.0 | |
| d2brxa1 | 225 | Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: | 100.0 | |
| d2a1fa1 | 236 | Uridylate kinase PyrH {Haemophilus influenzae [Tax | 100.0 | |
| d2ij9a1 | 219 | Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax | 100.0 | |
| d1z9da1 | 238 | Uridylate kinase PyrH {Streptococcus pyogenes [Tax | 100.0 | |
| d2akoa1 | 250 | Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1 | 100.0 | |
| d2j0wa1 | 292 | Aspartokinase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d2cdqa1 | 304 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 100.0 | |
| d2hmfa1 | 302 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 100.0 | |
| d2bufa1 | 300 | N-acetyl-l-glutamate kinase {Pseudomonas aeruginos | 100.0 | |
| d2btya1 | 282 | N-acetyl-l-glutamate kinase {Thermotoga maritima [ | 100.0 | |
| d2ap9a1 | 291 | N-acetyl-l-glutamate kinase {Mycobacterium tubercu | 100.0 | |
| d1e19a_ | 313 | Carbamate kinase {Archaeon Pyrococcus furiosus [Ta | 99.97 | |
| d1b7ba_ | 307 | Carbamate kinase {Enterococcus faecium [TaxId: 135 | 99.96 | |
| d1gs5a_ | 258 | N-acetyl-l-glutamate kinase {Escherichia coli [Tax | 99.94 |
| >d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Neisseria meningitidis [TaxId: 487]
Probab=100.00 E-value=1.8e-40 Score=283.80 Aligned_cols=236 Identities=52% Similarity=0.869 Sum_probs=184.8
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHH
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLAT 99 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~ 99 (267)
+|++|++|||||||+|++++++.++.+.+++++++|+++++.|+++++|+|||..++...... .+..............
T Consensus 1 ~mk~krIViKiGgs~l~~~~~~~i~~~~i~~la~~I~~l~~~g~~vviVssG~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (236)
T d1ybda1 1 QIKYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQA-GSMDRATADYMGMMAT 79 (236)
T ss_dssp CCSCSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHH-TTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECcceecCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeccccccccccccc-cccccchhhHHHHHHH
Confidence 478899999999999998776679999999999999999999999999998765443322211 1222222222222333
Q ss_pred HHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEe
Q 024480 100 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA 179 (267)
Q Consensus 100 ~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~l 179 (267)
..........+...+.....+................+...++.+.+++.....+.++++||.+|+++|..++||.|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdnD~laa~vA~~~~ad~liil 159 (236)
T d1ybda1 80 VMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKA 159 (236)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESSCBSSSCEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhhhhhhhhhHHHHHHHhhhccCceeccccccccccccchHHHHHHHHHhCccceeec
Confidence 33333344556667777665544333222222122334567788888888877778899999999999999999999999
Q ss_pred eccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 180 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 180 TDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|||||||++||+.+|+++++++++++|..+.|+++||++|++.|.++|++++|+||++|++|.++++|+.+||+|..
T Consensus 160 TdVdGvy~~dP~~~~~a~~~~~~~~~e~~~~g~~~m~~~Aa~~a~~~gi~v~I~ng~~~~~i~~~l~Ge~vGTlIh~ 236 (236)
T d1ybda1 160 TNVDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 236 (236)
T ss_dssp CSSSSCBSSCGGGCTTCCBCSEEEHHHHHHTTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred cCccchhhccccccccceeeccccHHHHHhcCchHHHHHHHHHHHHCCCcEEEEeCCCccHHHHHHcCCCCCcEeCC
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999973
|
| >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.4e-42 Score=292.34 Aligned_cols=214 Identities=26% Similarity=0.439 Sum_probs=177.6
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhc-CCCCCCChHHHHHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNA 103 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~ 103 (267)
++|||||||+|++++. +.+.+.+++++|+++.+ ++++|||||||++++++.... ..+.+....++.+...+++|.
T Consensus 2 rIViKiGGs~l~~~~~---~~~~i~~l~~~I~~l~~-~~~~viV~ggG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (225)
T d2brxa1 2 RIVFDIGGSVLVPENP---DIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANA 77 (225)
T ss_dssp EEEEEECHHHHCSSSC---CHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEeehhhcCCCCC---CHHHHHHHHHHHHHHHc-CCcEEEEECccHHHHHHHHhhhhcchhhHHHHHhhhhHHHHHH
Confidence 5899999999997643 77899999999999876 689999999999998875442 234444556777777888898
Q ss_pred HHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 024480 104 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 183 (267)
Q Consensus 104 ~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVd 183 (267)
.++...|...|++.... .+. +..++++.+.||+++++ .++.+||++|+++|.+|+||+|+|+||||
T Consensus 78 ~~~~~~l~~~~~~~~~~----------~~~--~~~~~l~~~~ipv~~~~--~~~~~~D~lAa~lA~~l~Ad~lii~TDVd 143 (225)
T d2brxa1 78 MLLIAALREKAYPVVVE----------DFW--EAWKAVQLKKIPVMGGT--HPGHTTDAVAALLAEFLKADLLVVITNVD 143 (225)
T ss_dssp HHHHHHHGGGBCSSCBC----------SHH--HHHHHHHTTCBCEECCC--STTCCHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred HHHHHHHHhhhcccccc----------cHH--HHHHHHHhcccccccCC--CCCcchhHHHHHHHHHhCchhhhhhhhhh
Confidence 88888899888875421 111 22467889999999864 46789999999999999999999999999
Q ss_pred ccccCCCCCCCCcccccccCHHHHhhc--------CCCcc-hHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEE
Q 024480 184 GVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVM-DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254 (267)
Q Consensus 184 GVy~~dP~~~~~a~li~~Is~~e~~~l--------g~g~m-k~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I 254 (267)
|||++||+.+|+|++|++|+++|+.++ |+++| +..|++.|.++|++++|+||++|++|.++++|+.+||+|
T Consensus 144 GVyt~dP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~g~gg~~~k~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~ge~~GT~i 223 (225)
T d2brxa1 144 GVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 223 (225)
T ss_dssp SCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEE
T ss_pred hhhhcccccccccccceEEecchHHHHhccCccccCCCCcccHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCCcEe
Confidence 999999999999999999999987764 45666 445889999999999999999999999999999999999
Q ss_pred ec
Q 024480 255 GG 256 (267)
Q Consensus 255 ~~ 256 (267)
.|
T Consensus 224 ~P 225 (225)
T d2brxa1 224 EP 225 (225)
T ss_dssp CC
T ss_pred cC
Confidence 75
|
| >d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=2.4e-40 Score=283.64 Aligned_cols=232 Identities=44% Similarity=0.780 Sum_probs=170.6
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMN 102 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 102 (267)
+||+|||||||+|++++++.++.+.+++++++|+++++.|+++++|+||+. +.++..+...+.+..........+...+
T Consensus 5 ~kRIViKiGgs~l~~~~~~~i~~~~i~~la~~I~~l~~~g~~vivVssg~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (236)
T d2a1fa1 5 YKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGN-LFRGAKLAKAGMNRVVGDHMGMLATVMN 83 (236)
T ss_dssp CSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTT-TCCCHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEccceecCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecccc-cchhhhhhhcCCCchhhHHHHHHHHHHH
Confidence 489999999999998776679999999999999999999999999987643 2222222212222222233333333334
Q ss_pred HHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeecc
Q 024480 103 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 182 (267)
Q Consensus 103 ~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDV 182 (267)
..++...+..........................+...++.+.+|++....+.+++|||.+|+++|.+++||.|+++|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dnD~laa~vA~~~~Ad~lii~TDV 163 (236)
T d2a1fa1 84 GLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKV 163 (236)
T ss_dssp HHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHHTTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHhhccccchhhhhhhhhhHHHhhhhhhhhhhhhcccccccccccCCCCCCcHHHHHHHHHhchhHHHHhhcc
Confidence 43343344444444433322222111111112334567788899998887778899999999999999999999999999
Q ss_pred CccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 183 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 183 dGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
||||++||+.+|+|+++++++++|+.+.|.++||++|++.|.++|++++|+||++|+.+.++++|+.+||+|+
T Consensus 164 dGvyt~dP~~~~~A~~i~~i~~~e~l~~G~~v~k~~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~Ge~~GTlI~ 236 (236)
T d2a1fa1 164 DGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC 236 (236)
T ss_dssp SSCBCC-------CCBCSEECHHHHHHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEEC
T ss_pred cccccccccccccccccccccHHHHHhcCCceeHHHHHHHHHHCCCeEEEEeCCCCcHHHHHHcCCCCcceeC
Confidence 9999999999999999999999998888888999999999999999999999999999999999999999985
|
| >d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.5e-39 Score=275.03 Aligned_cols=208 Identities=33% Similarity=0.472 Sum_probs=171.5
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhc-CCCCCCChHHHHHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNA 103 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~ 103 (267)
++|||||||+|++ +.+.+++++++|+++++.+ +++||||||++++++.... ..+++....+++..+++.++.
T Consensus 2 rIViKiGgs~l~~------~~~~i~~la~~i~~l~~~~-~~vIVvsgG~~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (219)
T d2ij9a1 2 KVVLSLGGSVLSN------ESEKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNA 74 (219)
T ss_dssp EEEEEECSSTTTT------CHHHHHHHHHHHHHHHHHS-EEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEecccccCC------cHHHHHHHHHHHHHHHcCC-cEEEEECCCccccchhhhhhhcCccHHHHHHHHHHHHHhhH
Confidence 6899999999986 4678999999999998764 9999999999998875432 245555566777778888888
Q ss_pred HHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 024480 104 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 183 (267)
Q Consensus 104 ~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVd 183 (267)
.+++..|...+.... ..+ .+..++++.+.+||..+ +..+++||++|+++|..++||.|+++||||
T Consensus 75 ~~~~~~l~~~~~~~~-----------~~~--~~~~~l~~~~~v~v~~~--~~~~~stD~laa~vA~~l~Ad~liilTDVD 139 (219)
T d2ij9a1 75 MLLISAIPSAAKKVP-----------VDF--MEAEELSKLYRVVVMGG--TFPGHTTDATAALLAEFIKADVFINATNVD 139 (219)
T ss_dssp HHHHHHCTTBCSSCC-----------SSH--HHHHHHHTTCSEEEECC--CSSSSCTHHHHHHHHHHTTCSEEEEEESSS
T ss_pred HHHHHHhhhccchhh-----------HHH--HHHHHHhccCCceEECC--CCCCCcccHHHHHHHHHcCchHhhhccCcc
Confidence 777766666665432 111 12346788899999876 356799999999999999999999999999
Q ss_pred ccccCCCCCCCCcccccccCHHHHhhc-------CCC--cchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEE
Q 024480 184 GVYDDNPRRNPNARLLDTLTYQEVTSK-------DLS--VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254 (267)
Q Consensus 184 GVy~~dP~~~~~a~li~~Is~~e~~~l-------g~g--~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I 254 (267)
|||++||+.+|+|++|++|+++|+.++ +.+ .||++|++.|.++|++++|+||+ |++|.++|+|+.+||+|
T Consensus 140 GvYt~dP~~~~~A~~i~~is~~e~~~~~~~~~~~~~gg~~~k~~Aa~~a~~~gi~~~I~~g~-~~ni~~~l~Ge~vGT~I 218 (219)
T d2ij9a1 140 GVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILGT-PENIMKAVKGEAVGTVI 218 (219)
T ss_dssp SCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEECC-HHHHHHHHTTCCCSEEE
T ss_pred cccccccccCcccccccccCHHHHHHHhhccCccCCCCCcchHHHHHHHHHcCCcEEEecCC-CcHHHHHHCCCCCceEe
Confidence 999999999999999999999987653 233 45999999999999999999996 78899999999999998
Q ss_pred e
Q 024480 255 G 255 (267)
Q Consensus 255 ~ 255 (267)
.
T Consensus 219 s 219 (219)
T d2ij9a1 219 A 219 (219)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Streptococcus pyogenes [TaxId: 1314]
Probab=100.00 E-value=2.1e-36 Score=257.58 Aligned_cols=234 Identities=47% Similarity=0.768 Sum_probs=178.0
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+||++|||||||+|++++++.++.+.+++++++|++++++|+++++|+|||..++...... .+...........++...
T Consensus 3 k~krIViKiGgs~lt~~~~~~l~~~~l~~ia~~I~~l~~~g~~Vv~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 81 (238)
T d1z9da1 3 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAAD-AGMDRVQADYTGMLGTVM 81 (238)
T ss_dssp SCSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHH-HTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcceecCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecccccccceeccc-cCCcchhHHHHHHHHHHH
Confidence 4689999999999998776669999999999999999999999999998876554433221 122222333344444444
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCC-CCCCCCCcHHHHHHHHHhcCCcEEEEee
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG-TGNPFFTTDTAAALRCAEINAEVVLKAT 180 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~-~g~~~~~sD~~Aa~lA~~l~Ad~Li~lT 180 (267)
+..+++..+..+++................+.............++..... ....+.++|.+|+.+|..++|+.++++|
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~a~~~~a~~li~~t 161 (238)
T d1z9da1 82 NALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKN 161 (238)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSCBTTTBEECCHHHHHHHHHTTCEEEEESTTSCTTCCHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHhhCCccchhhhhhhhHHHHhhhhHHHHHhhhccccccceecceeccCCCCchHHHHHHHHHhhhhhhcccc
Confidence 555556678888888765443333222211111222233333334443433 3345688899999999999999999999
Q ss_pred ccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 181 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 181 DVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
||||+|++||+.+|++++++++++.|....|.++||++|++.|.++|++++|+||++|++|.++++|+.+||+|+.
T Consensus 162 dVdGvy~~~P~~~~~a~~~~~~~~~~~~~~g~~~~k~~Aa~~a~~~gi~v~I~nG~~p~~i~~~l~Ge~~GTlIt~ 237 (238)
T d1z9da1 162 GVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN 237 (238)
T ss_dssp SCCSCBSSCTTTCTTCCBCSEEEHHHHHTTTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred cccceecccccccccchhhccccccchhccCcchhHHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCceEecc
Confidence 9999999999999999999999999888788999999999999999999999999999999999999999999974
|
| >d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Glutamate 5-kinase species: Campylobacter jejuni [TaxId: 197]
Probab=100.00 E-value=8.5e-37 Score=264.21 Aligned_cols=222 Identities=14% Similarity=0.181 Sum_probs=168.2
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCc-hHHhhhHHhcCCCCCCChHHHHHH---HHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG-NIFRGASAAGNSGLDRSSADYIGM---LAT 99 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG-~~~~~~~~~~~~~l~~~~~~~~~~---~~~ 99 (267)
|++|||||||+|++++ .++.+.+.+++++|+++++ ++++||||||| ++++ ...+ +........++ .++
T Consensus 1 krIViKlGGs~it~k~--~~~~~~l~~~~~~I~~l~~-~~~~vIV~gGa~~~G~--~~~~---~~~~~~~~~~~~~~~g~ 72 (250)
T d2akoa1 1 KRIVVKVGSHVISEEN--TLSFERLKNLVAFLAKLME-KYEVILVTSAAISAGH--TKLD---IDRKNLINKQVLAAIGQ 72 (250)
T ss_dssp CEEEEEECHHHHBCSS--SBCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHH--HHCC---CCSSSHHHHHHHHHHHH
T ss_pred CEEEEEeccCeeeCCC--CcCHHHHHHHHHHHHHHHc-CCeEEEEEcCcccccc--cccc---cccchhhhhhhhhcccc
Confidence 6899999999999875 5788999999999999986 78999998653 4543 3333 44433333333 333
Q ss_pred HHHHHHHHHHHHHcCCCeeEeeccccccccch--H--HHHHHHHHhhCCCEEEEeCCCC-----CCCCCcHHHHHHHHHh
Q 024480 100 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--Y--IRRRAVRHLEKGRVVIFAAGTG-----NPFFTTDTAAALRCAE 170 (267)
Q Consensus 100 ~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~--~--~~~~l~~ll~~g~iPIi~g~~g-----~~~~~sD~~Aa~lA~~ 170 (267)
.....++...|.++|+.+.. ...+...+... + ..+.+.++++.+.+||+++... ..++++|++|+++|..
T Consensus 73 ~~~~~~~~~~l~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ipv~~~~~~~~~~~~~~~~~D~~A~~lA~~ 151 (250)
T d2akoa1 73 PFLISVYNELLAKFNKLGGQ-ILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHF 151 (250)
T ss_dssp HHHHHHHHHHHGGGTCCEEE-EEECTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCCHHHHBTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhccccccc-ccccccchhhhhhhhhhhHHHHHHHHhCcccccccCccccccccccccchhhHHHHHHh
Confidence 44445567788999998753 22222222211 1 1233557899999999987521 2468999999999999
Q ss_pred cCCcEEEEeeccCccccCCCCCCCCcccccccCH--HHHhh--------cCCCcc--hHHHHHHHHhCCCcEEEEcCCCC
Q 024480 171 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQP 238 (267)
Q Consensus 171 l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~--~e~~~--------lg~g~m--k~~aa~~a~~~Gi~v~I~ng~~~ 238 (267)
++|++|+++|||||||++||+.+|+|++|++|++ ++..+ +++|+| |++||+.+.++|++|+|+||++|
T Consensus 152 ~~a~~li~~tdVdGVyd~dP~~~~~Ak~i~~It~~~~~~~~~~~~~~s~~~tGGM~~Kl~aa~~~~~~gi~v~I~nG~~~ 231 (250)
T d2akoa1 152 FDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDL 231 (250)
T ss_dssp TTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred cccceeeeccCCCceeeCCCcccccccchhhccccchHHhhhhcccCCCCCCCchHHHHHHHHHHHHCCCCEEEecCCCc
Confidence 9999999999999999999999999999999997 33322 258899 89999999999999999999999
Q ss_pred CcHHHHh-cCCC-cceEE
Q 024480 239 GNIAKAI-QGER-VGTLI 254 (267)
Q Consensus 239 ~~i~~~l-~g~~-~GT~I 254 (267)
+++.+++ .|+. .||+|
T Consensus 232 ~~l~~~l~~~~~~~GTv~ 249 (250)
T d2akoa1 232 SVAKTFLLEDKQIGGTLF 249 (250)
T ss_dssp HHHHHHHHSCCCCSSEEE
T ss_pred cHHHHHHhCCCCCCceEe
Confidence 9999977 4543 59998
|
| >d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9e-34 Score=250.39 Aligned_cols=214 Identities=19% Similarity=0.207 Sum_probs=165.4
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcC-------------------
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGN------------------- 83 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~------------------- 83 (267)
.++|.|||||++. +.+.++++++.|.+ .+.+.|||+|+ |-+.+.+..+..
T Consensus 1 ~~iV~KFGGTSv~-------~~~~i~~v~~ii~~---~~~~~vVVVSA~~gvTd~L~~~~~~~~~~~~~~~l~~i~~~h~ 70 (292)
T d2j0wa1 1 EIVVSKFGGTSVA-------DFDAMNRSADIVLS---DANVRLVVLSASAGITNLLVALAEGLEPGERFEKLDAIRNIQF 70 (292)
T ss_dssp CCEEEEECSGGGS-------SHHHHHHHHHHHTS---CTTEEEEEECCCTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEeeCccccC-------CHHHHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 3799999999998 67888888887753 45688888888 543333221100
Q ss_pred ---C----------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccch-
Q 024480 84 ---S----------------------------GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP- 131 (267)
Q Consensus 84 ---~----------------------------~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~- 131 (267)
. ..+++..+.+..+++++++.++..+|++.|+++.++++.+.....+.
T Consensus 71 ~~~~~l~~~~~~~~~l~~~~~~l~~l~~~~~~~~s~~~~d~Ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~i~t~~~~ 150 (292)
T d2j0wa1 71 AILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRF 150 (292)
T ss_dssp HHHTTSSSTHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSCT
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHhhhcccChHHHHHHHhhhHHHhHHHHHHHHHhcCCCccccchhheeecCCcc
Confidence 0 11122235556688999999999999999999998877665222111
Q ss_pred --------HHHH----HHHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCC
Q 024480 132 --------YIRR----RAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNP 190 (267)
Q Consensus 132 --------~~~~----~l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP 190 (267)
...+ .+...++. .+||++||.| ..+++||++|+.+|.+|+|+++.+||||||||+.||
T Consensus 151 ~~a~~~~~~~~~~~~~~~~~~~~~-~i~Vv~GFig~~~~G~~ttLGRgGSDytAa~~a~~l~A~~v~iwtDV~Gi~taDP 229 (292)
T d2j0wa1 151 GRAEPDIAALAELAALQLLPRLNE-GLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDP 229 (292)
T ss_dssp TSCCBCHHHHHHHHHHHTHHHHHH-SEEEEESSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCT
T ss_pred ccccchhhhhhhhhhhhhhhhhcc-cccccccccccccCCceEeeccCcccHHHHHHHHHhhcHHHHHhccCcceeechh
Confidence 1111 12233444 4899999832 257899999999999999999999999999999999
Q ss_pred CCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 191 RRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 191 ~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
+.+|+|++|+++||+|+.++ |...+|++|+.+|.+++||++|.|.++|+ ..||+|..+
T Consensus 230 ~~v~~A~~i~~lsy~EA~ela~~GakVlhp~ti~p~~~~~Ipi~i~nt~~p~---------~~GT~I~~~ 290 (292)
T d2j0wa1 230 RVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPR---------AGGTLVCNK 290 (292)
T ss_dssp TTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTT---------SCCEEEESC
T ss_pred hcCCCceEcceeCHHHHHHHHhCCccccCHHHHHHHHHcCCcEEEeeCCCCC---------CCCCeEecC
Confidence 99999999999999999886 88999999999999999999999999997 789999854
|
| >d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=6.6e-33 Score=245.98 Aligned_cols=216 Identities=21% Similarity=0.261 Sum_probs=167.6
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhc----C----------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAG----N---------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~----~---------------- 83 (267)
++|+|||||++. +.+.++++++.|....+ .+.|||+|+ |.+.+.+..+. .
T Consensus 4 ~~V~KFGGTSv~-------~~~~i~~v~~iI~~~~~--~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~ 74 (304)
T d2cdqa1 4 TCVMKFGGSSVA-------SAERMKEVADLILTFPE--ESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIK 74 (304)
T ss_dssp CEEEEECTGGGS-------SHHHHHHHHHHHHHCTT--CCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCHHHHHHH
T ss_pred eEEEeeCccccC-------CHHHHHHHHHHHHhcCC--CCcEEEEeCCCCChHHHHHHHHHHHhcchhhhhhhhHHHHHH
Confidence 579999999998 67899999998876333 355666677 54333221000 0
Q ss_pred ----------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccc-
Q 024480 84 ----------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV- 128 (267)
Q Consensus 84 ----------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~- 128 (267)
..++++..|.+..+++++++.+++.+|++.|+++.+.++++...+
T Consensus 75 ~~h~~~~~~l~~~~~~~~~~~~~l~~~l~~i~~~~~~s~~~~D~ils~GE~lSa~ll~~~L~~~gi~a~~~d~~~~~iit 154 (304)
T d2cdqa1 75 ELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFIT 154 (304)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEE
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhhccccccchhhHHHHHHhHHHHHHHHHHHHHHHcCCceEEEeeccccccc
Confidence 011122345566788999999999999999999998877664211
Q ss_pred ----cc-----hHH---HHH-HHHHhhCCCEEEEeCCC------C----CCCCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 024480 129 ----AE-----PYI---RRR-AVRHLEKGRVVIFAAGT------G----NPFFTTDTAAALRCAEINAEVVLKATNVDGV 185 (267)
Q Consensus 129 ----~~-----~~~---~~~-l~~ll~~g~iPIi~g~~------g----~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGV 185 (267)
.+ ... ... +..+++.+.|||++||. | ..+++||++|+.+|.+|+|+++.+|||||||
T Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~v~vv~Gfig~~~~~G~~ttLGRgGSD~TAa~la~~l~A~~~~iwtDV~Gi 234 (304)
T d2cdqa1 155 TDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGV 234 (304)
T ss_dssp CSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSS
T ss_pred ccccccccccccchhhhHHHHhhhhhccCcEEEeeccccccCcCCceeeeccCccccHHHHHHHHhCchHHHHhcCcchh
Confidence 11 011 112 33567889999999982 2 2468999999999999999999999999999
Q ss_pred ccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCC
Q 024480 186 YDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 186 y~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
|++||+.+|+|++|+++||+|+.++ |+.++|++|+.++.+++||++|.|.++|+ ..||+|..+.
T Consensus 235 ~taDPr~v~~a~~i~~lsy~EA~ela~~GakvlHp~ti~p~~~~~Ipi~i~nt~~p~---------~~GT~I~~~~ 301 (304)
T d2cdqa1 235 LTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPK---------APGTIITKTR 301 (304)
T ss_dssp BSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTT---------SCCEEEESCC
T ss_pred eeccccccCCceEcCccCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCC---------CCCCEEeCCC
Confidence 9999999999999999999999886 89999999999999999999999999997 7899998653
|
| >d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.3e-33 Score=246.39 Aligned_cols=216 Identities=22% Similarity=0.306 Sum_probs=171.7
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-------c-------------C-
Q 024480 26 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-------G-------------N- 83 (267)
Q Consensus 26 iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-------~-------------~- 83 (267)
.|.|||||++. +.+.++++++.|.+..+++.++|+|+|+ |.+.+.+..+ + .
T Consensus 2 tV~KFGGTSva-------dae~i~~V~~II~~~~~~~~~~vVVVSA~ggvTn~L~~~~~~a~~~~~~~~~~~~l~~i~~~ 74 (302)
T d2hmfa1 2 TVMKFGGTSVG-------SGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREK 74 (302)
T ss_dssp EEEEECTGGGS-------SHHHHHHHHHHHHHHHHHCSCEEEEECCCTTHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred EEEEeCcccCC-------CHHHHHHHHHHHHHHHhcCCCEEEEEeCCCCChhHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 69999999998 6789999999998877767788888888 5332221110 0 0
Q ss_pred ---------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccc
Q 024480 84 ---------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR 124 (267)
Q Consensus 84 ---------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~ 124 (267)
..++++..|.+..+++++++.++..+|++.|+++.++++.+
T Consensus 75 h~~~i~~l~~~~~~~~~~~~~i~~~l~~L~~~l~~~~~~~e~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~ 154 (302)
T d2hmfa1 75 HYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGE 154 (302)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEECTTT
T ss_pred HHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHhhhhhhHHhHHHHHHHHHcCCceEEeeccc
Confidence 00111223445557889999999999999999998877665
Q ss_pred cccccc----------hHHHHHHHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 024480 125 MSEVAE----------PYIRRRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGV 185 (267)
Q Consensus 125 ~~~~~~----------~~~~~~l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGV 185 (267)
...... ....+.+...++.+.|||++||.| ..+++||+.|+.+|.+|+|+++.+|||||||
T Consensus 155 ~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~v~Vv~GFig~~~~G~~ttLgRgGSD~tA~~la~~l~A~~~~i~tdv~gi 234 (302)
T d2hmfa1 155 AGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGV 234 (302)
T ss_dssp TTEEECSCTTSCCEEEECHHHHHHHHHHTTCEEEEESSEEECTTCCEEECCTTTHHHHHHHHHHHHTCSEEEEEESSSSC
T ss_pred cccccCCccchhhhhhhhhHHHHHHHHhcCCeEEeecccccCCCCCEEEEeccCcccHHHHHHHHhccHHHHHHhccchh
Confidence 422110 012345667788999999999832 2578999999999999999999999999999
Q ss_pred ccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 186 YDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 186 y~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
|+.||+.+|+++++++++|+|+.++ |...||++|+.+|.++|||++|.|.++|+ .+||+|..+
T Consensus 235 ~~~dP~~~~~a~~~~~~~y~ea~eLa~~g~~v~h~~~~~~~~~~~i~i~v~~~~~~~---------~~gT~i~~~ 300 (302)
T d2hmfa1 235 YTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPE---------SEGTLITND 300 (302)
T ss_dssp BSSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHHHHTTCCEEEEETTSTT---------SCCEEEESC
T ss_pred ccchhhcCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHcCCCEEEeeCCCCC---------CCCCEEcCC
Confidence 9999999999999999999999875 88899999999999999999999998886 789999865
|
| >d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1e-32 Score=244.46 Aligned_cols=225 Identities=17% Similarity=0.233 Sum_probs=171.6
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCCChHHH
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSADY 93 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~~~~~~ 93 (267)
.++.|++|||+||+++++ .+.+..++++|+.|+..|.++|||||||.+... +...+. .+++.+..+.
T Consensus 23 ~~r~ktiVIKlGG~~l~~-------~~~~~~~~~dIa~L~~~G~~vViVhGgg~~i~~~l~~~gi~~~~~~g~RvT~~~~ 95 (300)
T d2bufa1 23 RFVGKTLVIKYGGNAMES-------EELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAAT 95 (300)
T ss_dssp HHTTCEEEEEECCTTTTS-------SHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCCBSSSSBCBCHHH
T ss_pred HHCCCEEEEEEChHHhCC-------hhHHHHHHHHHHHHHHcCCcEEEecChHHHHHHHHHhcccCceecCCcccccchh
Confidence 467899999999999984 356789999999999999999999999976533 333331 2333322222
Q ss_pred ---HH-HHHHHHHHHHHHHHHHHcCCCeeEeeccccccc--------------------cchH------HHHH-HHHHhh
Q 024480 94 ---IG-MLATVMNAIFLQATMESIGIPTRVQTAFRMSEV--------------------AEPY------IRRR-AVRHLE 142 (267)
Q Consensus 94 ---~~-~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~--------------------~~~~------~~~~-l~~ll~ 142 (267)
.. .++..+|..++ +.|.++|+++..++..+...+ +..| ++.. +..+++
T Consensus 96 l~~~~~~~~g~vn~~lv-~~l~~~g~~a~~l~~~d~~~i~~~~~~~~~~~~~~~~~~~id~g~~G~v~~v~~~~i~~ll~ 174 (300)
T d2bufa1 96 MDVVEMVLGGQVNKDIV-NLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVK 174 (300)
T ss_dssp HHHHHHHHHHTHHHHHH-HHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHH-HHHHhcCCcccccCCCccceEEeecccccccCcccccccccccCcccceeecchhHHHHHhc
Confidence 22 24455677665 688889999987765442110 0001 2344 457899
Q ss_pred CCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---C--C
Q 024480 143 KGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D--L 212 (267)
Q Consensus 143 ~g~iPIi~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g--~ 212 (267)
.|+|||+++. .|. .++++|.+|+.+|.+|+|++|+|+|||||||+.+ .+++++++..++.++ + +
T Consensus 175 ~g~Ipvis~~~~~~~G~~~nin~D~~Aa~lA~~L~AdkLI~Ltdv~Gv~~~~------g~~~~~l~~~~~~~li~~~~i~ 248 (300)
T d2bufa1 175 GDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQ------GQVLTGLSTEQVNELIADGTIY 248 (300)
T ss_dssp TTCEEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCTT------SCBCCEECHHHHHHHHHTTCSC
T ss_pred CCCeEEecccccCcccchhcccHHHHHHHHHHHcCCCeEEEEcCCCccccCC------CcchhhccHHHHHHHHHcCCcC
Confidence 9999999973 333 4589999999999999999999999999999754 468999999887764 2 5
Q ss_pred Ccc--hHHHHHHHHhCCCc-EEEEcCCCCCcHH-HHhcCCCcceEEecCC
Q 024480 213 SVM--DMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGGTW 258 (267)
Q Consensus 213 g~m--k~~aa~~a~~~Gi~-v~I~ng~~~~~i~-~~l~g~~~GT~I~~~~ 258 (267)
++| |+++|..|.++|++ |+|+||+.|+.|. ++|+++++||.|+.+.
T Consensus 249 gGM~~Kl~aa~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~~~~ 298 (300)
T d2bufa1 249 GGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNRK 298 (300)
T ss_dssp TTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECCC
T ss_pred chHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHcCCCCceeEEecCC
Confidence 788 89999999999996 9999999999886 6889999999998654
|
| >d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.7e-32 Score=238.83 Aligned_cols=225 Identities=20% Similarity=0.236 Sum_probs=169.5
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-----CCCCCChH-
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDRSSA- 91 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-----~~l~~~~~- 91 (267)
+.++.|++|||+||++++ +++.+++++++|+.|++.|.++|||||+|++.+.+ .+.+. .+.+....
T Consensus 17 ~~~r~k~iVIKlGgsvi~-------~~~~~~~l~~dIa~L~~~G~~iVlVhGg~~~~~~~l~~~~i~~~~~~~~~~t~~~ 89 (282)
T d2btya1 17 KEFYGKTFVIKFGGSAMK-------QENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEK 89 (282)
T ss_dssp HHHTTCEEEEEECSHHHH-------SHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCBSSSSBCBCHH
T ss_pred HHhCCCEEEEEECchHhC-------ChhHHHHHHHHHHHHHHCCCeEEEEECCCccchhhHHHcCCcceeccCccccchh
Confidence 346789999999999998 45688999999999999999999999999876443 23221 11111111
Q ss_pred --HHHHH-HHHHHHHHHHHHHHHHcCCCeeEeeccccc-----------ccc---c-hHHH-HHHHHHhhCCCEEEEeCC
Q 024480 92 --DYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMS-----------EVA---E-PYIR-RRAVRHLEKGRVVIFAAG 152 (267)
Q Consensus 92 --~~~~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-----------~~~---~-~~~~-~~l~~ll~~g~iPIi~g~ 152 (267)
+.+.+ .....+..+ ...|..+|+++..++..... +.. + ..++ ..+..+|++|.|||+++.
T Consensus 90 ~~~~~~~~~~~~~n~~~-~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~d~~~~g~~~~v~~~~i~~lL~~~~ipvi~~~ 168 (282)
T d2btya1 90 TMEIVEMVLVGKINKEI-VMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPV 168 (282)
T ss_dssp HHHHHHHHHHHTHHHHH-HHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEESE
T ss_pred hHHHHHHHHhchhhHHH-HHHHHhcCCCeeeeeccccceeEeccccccccccccccccccChHHHHHHHhCCCceeecCc
Confidence 22222 233455554 46889999998876654321 110 0 0123 346689999999999984
Q ss_pred ----CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHH
Q 024480 153 ----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAI 220 (267)
Q Consensus 153 ----~g-~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa 220 (267)
.+ ..++++|.+|+.+|..++|++|+|+|||||||++ ++++++++..|+.++ .+++| |+++|
T Consensus 169 ~~~~~g~~~nl~~d~~aa~iA~~l~AdkLI~ltdv~Gl~~d-------~~~i~~~~~~~~~~~~~~~~~tgGM~~Kl~aA 241 (282)
T d2btya1 169 GIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD-------GKLISTLTPDEAEELIRDGTVTGGMIPKVECA 241 (282)
T ss_dssp EECSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET-------TEECCEECHHHHHHHHTTTCSCTTHHHHHHHH
T ss_pred ccCCcceeeeccccchhHHHhhhcCCceeEEeccccceecC-------ccccccCCHHHHHHHHHcCCcCchHHHHHHHH
Confidence 23 2358999999999999999999999999999963 478999999887653 36788 89999
Q ss_pred HHHHhCCCc-EEEEcCCCCCcHH-HHhcCCCcceEEecCC
Q 024480 221 TLCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGGTW 258 (267)
Q Consensus 221 ~~a~~~Gi~-v~I~ng~~~~~i~-~~l~g~~~GT~I~~~~ 258 (267)
..|.++|++ |+|+||+.|++|. ++|++++.||+|++..
T Consensus 242 ~~A~~~GV~~v~I~~g~~~~~ll~elft~~g~GT~I~~~e 281 (282)
T d2btya1 242 VSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKELE 281 (282)
T ss_dssp HHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCCC
T ss_pred HHHHHcCCCEEEEeCCCCCCHHHHHHhCCCCceEEEEeCC
Confidence 999999997 9999999999886 5788999999998764
|
| >d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3.9e-32 Score=239.69 Aligned_cols=227 Identities=19% Similarity=0.223 Sum_probs=168.8
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCCChHH
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSAD 92 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~~~~~ 92 (267)
+.++.|++|||+||++++ +.+.+++++++|+.|++.|.++|||||||.+... +...+. .+.+.....
T Consensus 21 ~~~r~ktiVIKlGGsvl~-------~~~~~~~l~~dia~L~~~G~~vVlVhGg~~~i~~~l~~~~~~~~~~~~~r~t~~~ 93 (291)
T d2ap9a1 21 KQLHGKVVVVKYGGNAMT-------DDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEGDFKGGFRVTTPE 93 (291)
T ss_dssp HHHTTCEEEEEECTHHHH-------SHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCCCCSSSSCCBCHH
T ss_pred HHhCCCEEEEEECcHHhc-------CHHHHHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHcCCCcccccccccCcHH
Confidence 446789999999999998 4568899999999999999999999999986543 333331 122222222
Q ss_pred H---HHH-HHHHHHHHHHHHHHHHcCCCeeEeecccccc--------------ccch------HHH-HHHHHHhhCCCEE
Q 024480 93 Y---IGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSE--------------VAEP------YIR-RRAVRHLEKGRVV 147 (267)
Q Consensus 93 ~---~~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~--------------~~~~------~~~-~~l~~ll~~g~iP 147 (267)
. +.. +....+.. +.+.+...|+.+.......... .... .++ +.+..+|+.|.||
T Consensus 94 ~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~G~v~~v~~~~I~~ll~~g~ip 172 (291)
T d2ap9a1 94 VLDVARMVLFGQVGRE-LVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIP 172 (291)
T ss_dssp HHHHHHHHHHHTHHHH-HHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEE
T ss_pred HHHHHHHhhhhHHHHH-HHHHHHhcCCccccchhhhcccccccccccccccccccceeecccccchHHHHHHHHhcCCCc
Confidence 2 222 22333443 3467778888877654332110 0000 122 3456899999999
Q ss_pred EEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcc--hH
Q 024480 148 IFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVM--DM 217 (267)
Q Consensus 148 Ii~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~m--k~ 217 (267)
|+++. .|. .++++|.+|+.+|.+++|++|+|+|||||||+++|+. .+++++++..|+.++ .+++| |+
T Consensus 173 vi~~~~~~~~g~~~n~d~D~lAa~lA~~l~AdkLI~LTdv~Gv~~~~~~~---~~~~~~~~~~~~~~~~~~~~gGM~~Kl 249 (291)
T d2ap9a1 173 VVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDR---DSLVSEIDTGTLAQLLPTLELGMVPKV 249 (291)
T ss_dssp EEESEEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTCT---TCEESEEEHHHHHHHGGGSCTTTHHHH
T ss_pred ccCccccCCccccccccHHHHHHHHHHhcCCcEEEEeeccCccccccccc---ccccccCCHHHHHHHHhhhhCchHHHH
Confidence 99984 232 4689999999999999999999999999999988753 357788887776653 67888 89
Q ss_pred HHHHHHHhCCCc-EEEEcCCCCCcHH-HHhcCCCcceEEec
Q 024480 218 TAITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGG 256 (267)
Q Consensus 218 ~aa~~a~~~Gi~-v~I~ng~~~~~i~-~~l~g~~~GT~I~~ 256 (267)
++|..|.++|++ |+|+||+.+++|. ++|++++.||+|.+
T Consensus 250 ~aA~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~r 290 (291)
T d2ap9a1 250 EACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVR 290 (291)
T ss_dssp HHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEEC
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCceEEec
Confidence 999999999997 9999999999987 68899999999974
|
| >d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=8.5e-31 Score=233.24 Aligned_cols=227 Identities=19% Similarity=0.229 Sum_probs=157.8
Q ss_pred cceEEEEeccccccCCCC-CCCC--HHHHHHHHHHHHHHHHCCCeEEEEECCchH-HhhhHHhcC-----CCCCCChHHH
Q 024480 23 WQRVLLKVSGEALAGDHT-QNID--PKITMAIAREVASVTRLGIEVAIVVGGGNI-FRGASAAGN-----SGLDRSSADY 93 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~-~~~~--~~~l~~l~~~I~~l~~~g~~vViVhGgG~~-~~~~~~~~~-----~~l~~~~~~~ 93 (267)
.|+||||+|||+|++++. ..++ .+.+++++++|+.|++.|+++|||||||.+ +..+...+. .+.+......
T Consensus 1 ~KrIVIKiGgs~l~~~~~~~~~~~~~~~l~~~~~~Ia~L~~~G~~vVlVhGGgpqi~~~l~~~~~~~~~~~~~~~~~~~~ 80 (313)
T d1e19a_ 1 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQATYGIPAQPMDVA 80 (313)
T ss_dssp CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_pred CCEEEEEeChHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCCccccCCCcccccHHH
Confidence 489999999999998753 2222 367899999999999999999999999864 333332221 2222222221
Q ss_pred H----HHHHHHHHHHHHHHHHHHcCCCeeEeecccc-----cc-------------------------------------
Q 024480 94 I----GMLATVMNAIFLQATMESIGIPTRVQTAFRM-----SE------------------------------------- 127 (267)
Q Consensus 94 ~----~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~-----~~------------------------------------- 127 (267)
. ..++..++..+ ...+.+.+++......... .+
T Consensus 81 ~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (313)
T d1e19a_ 81 GAMSQGWIGYMIQQAL-KNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRG 159 (313)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSC
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhccccHHhhHHHHhhhhhhHHHHhhccCceeehhhhhhHHHHHHhhcCceeeeccCcc
Confidence 1 12222333333 3456667766432221110 00
Q ss_pred ----ccc----hHHH-HHHHHHhhCCCEEEEeCC------------CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 024480 128 ----VAE----PYIR-RRAVRHLEKGRVVIFAAG------------TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGV 185 (267)
Q Consensus 128 ----~~~----~~~~-~~l~~ll~~g~iPIi~g~------------~g-~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGV 185 (267)
+.. ..++ ..+..+++++.+|++.+. +| ..++|+|++|+.+|.+++||+|+|+||||||
T Consensus 160 ~~~~v~~~~~~~~v~~~~i~~~~~~~~i~vl~~~~~~~v~~~~~~~~G~~~ninaD~lAa~vA~~l~Ad~LIlLTdv~Gv 239 (313)
T d1e19a_ 160 WRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGA 239 (313)
T ss_dssp EEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred ceeeccCCCceeEecccceeeccccchhhhhccCCCCCccccCCCcCceEEecchhHHHHHHHHHHHHHHHHhccCCcce
Confidence 000 0122 234578899999988752 12 3468999999999999999999999999999
Q ss_pred ccCCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhCCCc-EEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 186 YDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 186 y~~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~Gi~-v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|+++| ++++++|++++.+|+.++ ++|+| |++||..|+++|+. ++|.+ ++.+.++|+|+ .||+|.|
T Consensus 240 ~~~~~--~~~~~~i~~l~~~e~~~li~~g~~~~GGM~~Kv~aA~~a~~~Gv~~v~I~~---~~~i~~~l~g~-~GT~i~P 313 (313)
T d1e19a_ 240 ALYYG--TEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAH---LEKAVEALEGK-TGTQVLP 313 (313)
T ss_dssp EETTT--STTCEECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEE---GGGHHHHHTTS-SSEEEEC
T ss_pred eccCC--CcccceeeeCCHHHHHHHhhCCCcccCChHHHHHHHHHHHHhCCCEEEECC---hHHHHHHHCCC-CCCEEcC
Confidence 98766 467899999999988764 56889 89999999999885 88865 57799999986 7999986
|
| >d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Enterococcus faecium [TaxId: 1352]
Probab=99.96 E-value=7e-30 Score=226.32 Aligned_cols=227 Identities=15% Similarity=0.208 Sum_probs=151.2
Q ss_pred cceEEEEeccccccCCCC-CCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHH-hhhHHhcC---CCCCC-ChHHHH--
Q 024480 23 WQRVLLKVSGEALAGDHT-QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF-RGASAAGN---SGLDR-SSADYI-- 94 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~-~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~-~~~~~~~~---~~l~~-~~~~~~-- 94 (267)
.|++|||+|||+|++++. ...+.+.+.+++++|+.|++.|+++|||||||.+. +.+...+. +.... +..+..
T Consensus 1 gk~iVIK~GGsal~~~~~~~~~~~~~l~~~~~~Ia~L~~~G~~vViVHGGgpqi~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (307)
T d1b7ba_ 1 GKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSEKNPAMPLDTCVAM 80 (307)
T ss_dssp CCEEEEEECHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTCSSSSCCCCHHHHHHH
T ss_pred CCEEEEEEChhhhCCCCCCchHHHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcCCCCcccccccccchHHHH
Confidence 479999999999997653 23456789999999999999999999999999643 33332211 11111 122111
Q ss_pred --HHHHHHHHHHHHHHHHHHcCCCeeEeecccc-------------------------------------cc--------
Q 024480 95 --GMLATVMNAIFLQATMESIGIPTRVQTAFRM-------------------------------------SE-------- 127 (267)
Q Consensus 95 --~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~-------------------------------------~~-------- 127 (267)
......+..... .......++......... .+
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (307)
T d1b7ba_ 81 TQGSIGYWLSNALN-QELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGWRKV 159 (307)
T ss_dssp HHHHHHHHHHHHHH-HHHHHTTCCCEEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHTTTCCEEEETTTEEEEE
T ss_pred HHHHHHHHHhhhhH-HHHhhcccchhhhhhhhhhhHHHHHHHHHccCcceeeecccchHHHHHHhhcceeccccccceee
Confidence 112222222211 222233333211111000 00
Q ss_pred ccc----hHHH-HHHHHHhhCCCEEEEeCC----------CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCC
Q 024480 128 VAE----PYIR-RRAVRHLEKGRVVIFAAG----------TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR 191 (267)
Q Consensus 128 ~~~----~~~~-~~l~~ll~~g~iPIi~g~----------~g-~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~ 191 (267)
... ...+ ..+...++.+.+|+..+. +| ..++|+|++|+.+|.+|+||+|+|+|||||||+++|+
T Consensus 160 ~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~ninaD~lAa~iA~~l~Ad~Li~lTdv~Gv~~~~~~ 239 (307)
T d1b7ba_ 160 VPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCINYGK 239 (307)
T ss_dssp ECCCCEEEETTHHHHHHHHHTTEEEECSGGGCEEEETTTTEECSCCCCHHHHHHHHHHHHTCSEEEEECSSSSCEETTTS
T ss_pred cCcCceeeeechhhhhhhhhcCceeeccCCccccccccCCCCcEEecchhHHHHHHHHHhhhhheeeccccCceeeCCCc
Confidence 000 0012 224467788988886541 12 3469999999999999999999999999999998874
Q ss_pred CCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhCCCc-EEEEcCCCCCcHHHHhcCCCcceEE
Q 024480 192 RNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLI 254 (267)
Q Consensus 192 ~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~Gi~-v~I~ng~~~~~i~~~l~g~~~GT~I 254 (267)
|+.+++++++.+|+.++ ++|+| |++||..|.++|++ ++|+++ ++.+.+++.++++||.|
T Consensus 240 --~~~~~i~~l~~~e~~~l~~~g~~~~GGM~pKl~aA~~al~~Gv~~~~ii~~--~~~l~~l~~~~~~GT~I 307 (307)
T d1b7ba_ 240 --PDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS--LENLGSMSGDEIVGTVV 307 (307)
T ss_dssp --TTCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHTTSTTCEEEEEC--HHHHTTCSSCSCEEECC
T ss_pred --ccccccccCCHHHHHHHHHCCCcccCChHHHHHHHHHHHHcCCCeEEEECC--HHHHHHHHcCCCCCCCC
Confidence 56788999999987654 57889 89999999999995 777764 45677899999999976
|
| >d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=7.7e-26 Score=193.47 Aligned_cols=216 Identities=18% Similarity=0.145 Sum_probs=154.6
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCe-EEEEECCchHHhhh-HHhcCCCCCCC--------hH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIE-VAIVVGGGNIFRGA-SAAGNSGLDRS--------SA 91 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~-vViVhGgG~~~~~~-~~~~~~~l~~~--------~~ 91 (267)
.|+++|||||||+|+ +.+.+++++++|+.|++.|++ +|||||+|++.+.+ .+.+ .... ..
T Consensus 1 Mm~~IVIKiGgs~lt-------~~~~~~~~~~~ia~l~~~g~~~vvvvhG~g~~~~~~~~~~g---~~~~~~~~~~~~~~ 70 (258)
T d1gs5a_ 1 MMNPLIIKLGGVLLD-------SEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLN---LPVKKKNGLRVTPA 70 (258)
T ss_dssp CCCCEEEEECGGGGG-------CHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHT---CCCCEETTEECBCH
T ss_pred CCCCEEEEECchhcc-------CHHHHHHHHHHHHHHHHCCCceEEEECCCchhhhcchhhhc---cccccccccchhhH
Confidence 367899999999999 457899999999999999976 89999999877543 2333 2221 11
Q ss_pred HHH---HH-HHHHHHHHHHHHHHHHcCCCeeEeecccccccc----c-h--------HHH-HHHHHHhhCCCEEEEeCC-
Q 024480 92 DYI---GM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA----E-P--------YIR-RRAVRHLEKGRVVIFAAG- 152 (267)
Q Consensus 92 ~~~---~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~----~-~--------~~~-~~l~~ll~~g~iPIi~g~- 152 (267)
... .. .....+.. +...+...|.+............. . . .++ ..+...++.+.+|++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~v~~~~~ 149 (258)
T d1gs5a_ 71 DQIDIITGALAGTANKT-LLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIG 149 (258)
T ss_dssp HHHHHHHHHHHTHHHHH-HHHHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEE
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhccCccccccccccccccccccccccccccccccccccchHHHHHhccccccccccc
Confidence 111 11 22233443 345777788887755433221110 0 0 011 335578899999999873
Q ss_pred ---CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhh-----cCCCcc--hHHHHH
Q 024480 153 ---TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS-----KDLSVM--DMTAIT 221 (267)
Q Consensus 153 ---~g-~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~-----lg~g~m--k~~aa~ 221 (267)
.+ ....++|.+|+.+|..++|+. +++||++|+|..++. .++++...+... .++|+| |++||.
T Consensus 150 ~~~~~~~~~~~~~~~a~~~a~~l~a~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aA~ 222 (258)
T d1gs5a_ 150 VTDEGQLMNVNADQAATALAATLGADL-ILLSDVSGILDGKGQ------RIAEMTAAKAEQLIEQGIITDGMIVKVNAAL 222 (258)
T ss_dssp ECTTSCEEECCHHHHHHHHHHHHTCEE-EEEESSSSCBCTTSC------BCCEECHHHHHHHHHTTCSCTHHHHHHHHHH
T ss_pred cccCCcEEEechhhhhhhHHHHHHhhh-hhhcccccccccccc------cccccchHHHHHHHhCCcccchHHHHHHHHH
Confidence 12 235899999999999999986 567899999987653 444555544332 368889 999999
Q ss_pred HHHhCCCc-EEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 222 LCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 222 ~a~~~Gi~-v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
.|.++|++ |+|+||+.|+.|.++|+|+..||+|.
T Consensus 223 ~a~~~Gv~~v~I~~g~~~~~L~~l~~g~~~GT~i~ 257 (258)
T d1gs5a_ 223 DAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp HHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred HHHHcCCCEEEEEeCCCchHHHHHhcCCCCceEEe
Confidence 99999996 99999999999999999999999995
|