Citrus Sinensis ID: 024505

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEVSNCSTLSF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccEEEEcccHHHHHHHcHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccEEEHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MEAIRKQATKLREQVARQQQAVFKqfggggyggsdnvvtdeaELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKlsedsrkygsdntctsgnTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAkvretpgnpdlaLKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLegevsncstlsf
Flexible Loop (DISEMBL)
MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVegyivtgskqveigtklsedsrkygsdntctsgntlSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIevskrqakvretpgnpdlaLKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDqlegevsncstlsf
Low Complexity Region (SEG)
MEAIRKQATKLREQVARQQQAVFKQFggggyggSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEaaaamaaVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEVSNCSTLSF
Disordered region (IsUnstruct)
************************************************RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEI********************************************LKALGTQVAEPLRAMVLGAP**********************************************AAEVKLHDLKSNMAILGKEAAAAMAAVE**QQRLTLQRLIAMVEAERTYHQRVLQILDQLE***********
Disordered Region (DISOPRED)
*********************************SDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARA***K*RGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEA****************************EVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEVSNCSTLSF
Disordered Region (DISEMBL)
****************RQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKE*************RLTLQRLIAMVEAERTYHQRVLQILDQLEGE*********
Disordered Region (DISPRO)
*EAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEVS*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAKVRETPGNPDLALKxxxxxxxxxxxxxxxxxxxxxAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEVSNCSTLSF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
449464848	375	PREDICTED: uncharacterized protein LOC10	0.969	0.688	0.887	1e-124
357467415	371	Neutrophil cytosol factor [Medicago trun	0.969	0.695	0.879	1e-123
224080426	372	predicted protein [Populus trichocarpa]	0.977	0.698	0.876	1e-123
255543841	371	clathrin binding protein, putative [Rici	0.969	0.695	0.887	1e-123
225458099	368	PREDICTED: uncharacterized protein LOC10	0.969	0.701	0.833	1e-122
356508236	371	PREDICTED: uncharacterized protein LOC10	0.969	0.695	0.879	1e-121
363808378	365	uncharacterized protein LOC100783004 [Gl	0.969	0.706	0.883	1e-121
224103333	371	predicted protein [Populus trichocarpa]	0.977	0.700	0.9	1e-120
289540934	379	SH3 domain-containing protein [Trifolium	0.951	0.667	0.861	1e-118
334187161	317	SH3 domain-containing protein [Arabidops	0.958	0.804	0.813	1e-116

>gi|449464848|ref|XP_004150141.1| PREDICTED: uncharacterized protein LOC101205534 [Cucumis sativus] gi|449520605|ref|XP_004167324.1| PREDICTED: uncharacterized protein LOC101227373 [Cucumis sativus]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/258 (88%), Positives = 249/258 (96%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           M+AIRKQATKLREQVARQQQAV KQFG GGYGGSDN++TDEAELHQHQ+LE+LYISTRAG
Sbjct: 1   MDAIRKQATKLREQVARQQQAVLKQFGAGGYGGSDNIITDEAELHQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYG++NTCTSG+TLSKAAL+YGRARAQ
Sbjct: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGSTLSKAALNYGRARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGN+LKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEAQAIEV KRQA+V
Sbjct: 121 MEKERGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVFKRQARV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE PGN ++ +KL+AAE KLHDLKSNMA +GKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 REAPGNAEITVKLEAAEAKLHDLKSNMATMGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEV 258
           R YHQRVLQILDQLEGE+
Sbjct: 241 RAYHQRVLQILDQLEGEM 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467415|ref|XP_003603992.1| Neutrophil cytosol factor [Medicago truncatula] gi|355493040|gb|AES74243.1| Neutrophil cytosol factor [Medicago truncatula]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/258 (87%), Positives = 244/258 (94%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+KLREQVARQQQAV KQFG GGYGGSDN+VTDE EL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS+NTCTSG+TLS+AAL+Y  ARAQ
Sbjct: 61  KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCTSGSTLSRAALNYAHARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQ+AEAQAIEVSKRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RETPGN +  +KL+AAE KL DLKSNMAILGKEAAAAM AVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 RETPGNAENTMKLEAAETKLQDLKSNMAILGKEAAAAMTAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEV 258
           R YHQRVLQILD LEGE+
Sbjct: 241 RAYHQRVLQILDHLEGEM 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080426|ref|XP_002306133.1| predicted protein [Populus trichocarpa] gi|222849097|gb|EEE86644.1| predicted protein [Populus trichocarpa]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/260 (87%), Positives = 248/260 (95%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATKLREQVA+QQQAV KQFG GGYGGSD V+TDEAELHQHQ+LERLYISTRAG
Sbjct: 1   MEAIRKQATKLREQVAKQQQAVLKQFGAGGYGGSDTVITDEAELHQHQKLERLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRD+VRGVEGYIVTGSKQVEIGT+ SEDSRKYG++NTCTSGNTLSKAA++Y  ARAQ
Sbjct: 61  KHFQRDVVRGVEGYIVTGSKQVEIGTRFSEDSRKYGAENTCTSGNTLSKAAVNYANARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEAQAIEV+KRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVAKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE PGN +LA+KL++AE KL DLKSNMAILGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 REMPGNSELAMKLESAETKLQDLKSNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEVSN 260
           R YHQ VLQILDQLEGE+++
Sbjct: 241 RAYHQTVLQILDQLEGEMAS 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543841|ref|XP_002512983.1| clathrin binding protein, putative [Ricinus communis] gi|223547994|gb|EEF49486.1| clathrin binding protein, putative [Ricinus communis]

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/258 (88%), Positives = 246/258 (95%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATKLREQVARQQQAV KQFG  GYGG+D V+TDEAELHQHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQATKLREQVARQQQAVLKQFGASGYGGADGVITDEAELHQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEGYIVTG+KQVEIGTKLSED RKYG++NTCTSGNTLSKAAL+Y RARAQ
Sbjct: 61  KHFQRDIVRGVEGYIVTGAKQVEIGTKLSEDCRKYGAENTCTSGNTLSKAALNYERARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+G PL+DARHLAQRYDRMRQEAEAQAIEVSKRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGTPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE PG+P+LA+KL+AAE KL DLKSNMA+LGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 REMPGSPELAMKLEAAESKLQDLKSNMAVLGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEV 258
           R YHQRVLQILDQLE E+
Sbjct: 241 RAYHQRVLQILDQLESEM 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458099|ref|XP_002279562.1| PREDICTED: uncharacterized protein LOC100264255 isoform 1 [Vitis vinifera] gi|302142592|emb|CBI19795.3| unnamed protein product [Vitis vinifera]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/258 (83%), Positives = 238/258 (92%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATK+ +QVA+QQQAV KQF GGGYGG DNV+TDE+EL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQATKIIDQVAKQQQAVLKQFSGGGYGGPDNVLTDESELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEG+IVTGSKQVEIGTKLSEDSRKYG +NTCTSG+TLSKAALS+ RARAQ
Sbjct: 61  KHFQRDIVRGVEGFIVTGSKQVEIGTKLSEDSRKYGVENTCTSGSTLSKAALSFARARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGT+V EPLRAMV+GAPL+DARHLAQRY+RMR EAEAQAIEVSKRQ K 
Sbjct: 121 MEKERGNLLKALGTKVGEPLRAMVMGAPLEDARHLAQRYERMRMEAEAQAIEVSKRQIKA 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE+ GNPD  LKL+AAE KLH+LKSN AILGKEA +AMAAVE QQQRLTLQR+IAMVE+E
Sbjct: 181 RESMGNPDNVLKLEAAEAKLHELKSNTAILGKEAVSAMAAVEGQQQRLTLQRIIAMVESE 240

Query: 241 RTYHQRVLQILDQLEGEV 258
           R+YHQ VLQILDQLE E+
Sbjct: 241 RSYHQSVLQILDQLESEM 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508236|ref|XP_003522865.1| PREDICTED: uncharacterized protein LOC100810746 isoform 1 [Glycine max]

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/258 (87%), Positives = 246/258 (95%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+KLREQVARQQQAV KQFG GGYGGSDN+VTDE EL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIVTGSKQVEIGTKLSED+RKYG+DNTCTSG+TLS+AAL+Y  ARAQ
Sbjct: 61  KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDNRKYGADNTCTSGSTLSRAALNYAHARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERG+LLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEAQAIEVSKRQAKV
Sbjct: 121 MEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RETPGN + A+KL+AAE KL DLK+NMAILGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 RETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEV 258
             YHQRVLQILDQLEGE+
Sbjct: 241 HAYHQRVLQILDQLEGEM 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808378|ref|NP_001242513.1| uncharacterized protein LOC100783004 [Glycine max] gi|255635032|gb|ACU17874.1| unknown [Glycine max]

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/258 (88%), Positives = 246/258 (95%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+KL EQVARQQQAV KQFG GGYGGSDN+VTDE EL QHQ+LE LYISTRAG
Sbjct: 1   MEAIRKQASKLLEQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEELYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYG+DNTCTSG+TLS+AAL+Y RARAQ
Sbjct: 61  KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGADNTCTSGSTLSRAALNYARARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERG+LLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEA+AIEVSKRQAKV
Sbjct: 121 MEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEARAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RETPGN + A+KL+AAE KL DLK+NMAILGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 RETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEV 258
           R YHQRVLQILDQLEGE+
Sbjct: 241 RAYHQRVLQILDQLEGEM 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103333|ref|XP_002313015.1| predicted protein [Populus trichocarpa] gi|222849423|gb|EEE86970.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/260 (90%), Positives = 253/260 (97%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATKLREQVA+QQQAV KQFGGGGYGGSD +VTDEAELHQHQ+LERLYISTRAG
Sbjct: 1   MEAIRKQATKLREQVAKQQQAVLKQFGGGGYGGSDTLVTDEAELHQHQKLERLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEGYIVTGSKQVEIGTK SEDSRKYG++NTCTSGNTLSKAA++YGRARAQ
Sbjct: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKFSEDSRKYGAENTCTSGNTLSKAAVNYGRARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEAQAIEVSKRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE PG+P+LA+KL++AE KL DLKSNM+ILGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 REMPGSPELAMKLESAETKLQDLKSNMSILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEVSN 260
           R YHQRVLQILDQLEGE+++
Sbjct: 241 RAYHQRVLQILDQLEGEMTS 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289540934|gb|ADD09605.1| SH3 domain-containing protein [Trifolium repens]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/253 (86%), Positives = 240/253 (94%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+KLREQVARQQQAV KQFG GGYGGSDN+VTDEAEL QHQ+LE+LYISTRA 
Sbjct: 1   MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEAELQQHQKLEKLYISTRAA 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIV GSKQVEIGTKLSEDSRKYG++NTCTSG+TLS+AAL+Y RARAQ
Sbjct: 61  KHYQRDIVRGVEGYIVNGSKQVEIGTKLSEDSRKYGAENTCTSGSTLSRAALNYARARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQ+AEAQAIEVSKRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RETPGN + A+KL+AAE KL DLK+NMAILGKEAAAAM AVE+QQQRLTLQRLIAMVE+E
Sbjct: 181 RETPGNAENAMKLEAAETKLQDLKANMAILGKEAAAAMTAVEAQQQRLTLQRLIAMVESE 240

Query: 241 RTYHQRVLQILDQ 253
           R YHQRVLQ++ +
Sbjct: 241 RAYHQRVLQMISE 253

Source: Trifolium repens

Species: Trifolium repens

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187161|ref|NP_001190914.1| SH3 domain-containing protein [Arabidopsis thaliana] gi|332661007|gb|AEE86407.1| SH3 domain-containing protein [Arabidopsis thaliana]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/258 (81%), Positives = 241/258 (93%), Gaps = 3/258 (1%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           M+AIRKQA++LREQVARQQQAVFKQFGGGG     + + DEAEL+QHQ+LE+LYISTRA 
Sbjct: 1   MDAIRKQASRLREQVARQQQAVFKQFGGGG---YGSGLADEAELNQHQKLEKLYISTRAA 57

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS+NTCT+GN L++AAL+YGRARAQ
Sbjct: 58  KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCTNGNVLTRAALNYGRARAQ 117

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGN+LKALGTQVAEPLRAMVLGAPL+DARHLAQRYDRMRQEAEAQA EV++RQAK 
Sbjct: 118 MEKERGNMLKALGTQVAEPLRAMVLGAPLEDARHLAQRYDRMRQEAEAQATEVARRQAKA 177

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE+ GNPD+ +KL++AE KLHDLKSNM ILGKEAA+A+A+VE QQQ+LTL+RL++MVE+E
Sbjct: 178 RESQGNPDILMKLESAEAKLHDLKSNMTILGKEAASALASVEDQQQKLTLERLLSMVESE 237

Query: 241 RTYHQRVLQILDQLEGEV 258
           R YHQRVLQILDQLEGEV
Sbjct: 238 RAYHQRVLQILDQLEGEV 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2139554	368	AT4G34660 "AT4G34660" [Arabido	0.958	0.692	0.779	2.9e-103
TAIR|locus:2117666	351	AT4G18060 "AT4G18060" [Arabido	0.966	0.732	0.540	3.5e-68
TAIR|locus:2206174	439	AT1G31440 [Arabidopsis thalian	0.951	0.576	0.525	3e-62
DICTYBASE|DDB_G0279009	576	gacP "RhoGAP domain-containing	0.834	0.385	0.210	0.00058

TAIR|locus:2139554 AT4G34660 "AT4G34660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 201/258 (77%), Positives = 229/258 (88%)

Query:     1 MEAIRKQATKLREQVARQQQAVFKQFXXXXXXXSDNVVTDEAELHQHQRLERLYISTRAG 60
             M+AIRKQA++LREQVARQQQAVFKQF           + DEAEL+QHQ+LE+LYISTRA 
Sbjct:     1 MDAIRKQASRLREQVARQQQAVFKQFGGGGYGSG---LADEAELNQHQKLEKLYISTRAA 57

Query:    61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
             KH+QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS+NTCT+GN L++AAL+YGRARAQ
Sbjct:    58 KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCTNGNVLTRAALNYGRARAQ 117

Query:   121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
             MEKERGN+LKALGTQVAEPLRAMVLGAPL+DARHLAQRYDRMRQEAEAQA EV++RQAK 
Sbjct:   118 MEKERGNMLKALGTQVAEPLRAMVLGAPLEDARHLAQRYDRMRQEAEAQATEVARRQAKA 177

Query:   181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEXXXXXXXVESQQQRLTLQRLIAMVEAE 240
             RE+ GNPD+ +KL++AE KLHDLKSNM ILGKE       VE QQQ+LTL+RL++MVE+E
Sbjct:   178 RESQGNPDILMKLESAEAKLHDLKSNMTILGKEAASALASVEDQQQKLTLERLLSMVESE 237

Query:   241 RTYHQRVLQILDQLEGEV 258
             R YHQRVLQILDQLEGE+
Sbjct:   238 RAYHQRVLQILDQLEGEM 255

GO:0008150 "biological_process" evidence=ND

GO:0030276 "clathrin binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2117666 AT4G18060 "AT4G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 140/259 (54%), Positives = 181/259 (69%)

Query:     1 MEAIRKQATKLREQVARQQQAVFKQFXXXXXXXSDNVVTDEAELHQHQRLERLYISTRAG 60
             M+A R+QA+KLR+QVA+QQ AV KQF       SD +V DE E+ +H +L++LY STR+ 
Sbjct:     1 MDAFRRQASKLRDQVAKQQLAVIKQFSGTGYESSDVMVIDELEMQRHHQLDKLYRSTRSA 60

Query:    61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCT-SGNTLSKAALSYGRARA 119
             K FQRDIV+  E +   G + +E GTKLSED  +YG++N+     N L+KAA  YG AR 
Sbjct:    61 KEFQRDIVKAAEAFTTIGLRHIEAGTKLSEDCCRYGNENSQNIDENILAKAAAIYGDARK 120

Query:   120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAK 179
              ++KE+ +  K L +QV +PLRAMV G+PL+DARHLAQRY RMRQEAE  A EVS+RQA+
Sbjct:   121 HVDKEQEDFNKLLASQVLDPLRAMVAGSPLEDARHLAQRYSRMRQEAETHATEVSRRQAR 180

Query:   180 VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEXXXXXXXVESQQQRLTLQRLIAMVEA 239
             VRE P  P+   KL  AE K+ +LK+NMA+LGKE       VESQQ RLT QRL+AMVE 
Sbjct:   181 VREAP-IPENVAKLQLAEAKMQELKANMAVLGKEATAALAAVESQQHRLTFQRLVAMVEG 239

Query:   240 ERTYHQRVLQILDQLEGEV 258
             E+ YH R+  IL  +E E+
Sbjct:   240 EKNYHLRIAAILSDIEAEM 258

GO:0030276 "clathrin binding" evidence=ISS

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2206174 AT1G31440 [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 136/259 (52%), Positives = 176/259 (67%)

Query:     1 MEAIRKQATKLREQVARQQQAVFKQFXXXXXXXSDNVVTDEAELHQHQRLERLYISTRAG 60
             MEAIRKQA KLREQVARQQQAV K         +D VV DE ELH HQ+L+ LY ST+A 
Sbjct:     1 MEAIRKQAAKLREQVARQQQAVLKHLGHVN---ADAVVVDEEELHCHQKLQDLYSSTKAA 57

Query:    61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNT-LSKAALSYGRARA 119
             K  QR+IVRG+EG+I TG+K VEIG K +ED +KYG +N     NT LS+ A  +G +  
Sbjct:    58 KRLQRNIVRGLEGFIATGTKVVEIGLKFAEDFKKYGDENP--DANTPLSRVAHHFGTSYK 115

Query:   120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAK 179
              +E ER  LL  L  QV EP+R M+  APL+DARHL   YDR+RQE EAQA +V +R++K
Sbjct:   116 SVEGERETLLGVLSEQVCEPIRTMIYSAPLEDARHLVNHYDRLRQEVEAQATDVLRRRSK 175

Query:   180 VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEXXXXXXXVESQQQRLTLQRLIAMVEA 239
             ++E+  + +  +KL  +E +L +LKS+M  LGKE       V+ QQQ +T QRL A+VEA
Sbjct:   176 LKESDISEEAYIKLKNSESRLAELKSSMKTLGKEATKAMLEVDDQQQNVTSQRLRALVEA 235

Query:   240 ERTYHQRVLQILDQLEGEV 258
             ER+YH+  L ILD+L  E+
Sbjct:   236 ERSYHRNALDILDKLHSEM 254

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0012505 "endomembrane system" evidence=IDA

GO:0030276 "clathrin binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

DICTYBASE|DDB_G0279009 gacP "RhoGAP domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 115 (45.5 bits), Expect = 0.00058, P = 0.00058
 Identities = 50/238 (21%), Positives = 101/238 (42%)

Query:    24 KQFXXXXXXXSDNVVTDEAELH---QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSK 80
             K F         NV+   A+     +   ++ L   T   K F R + + VE   ++   
Sbjct:     2 KNFKAKIITAKQNVMEKTAKRENTLEPDEMKELEKKTTETKDFLRKLTKSVEKETLSSGV 61

Query:    81 QVEIGTKLSEDSRKYG---SDNTCTSGNTLSKAALS-YGRARAQMEKERGNLLKALGTQV 136
              ++ GT+L+++   Y     DN   S   +    LS  G  +A  E  +  L  +L   V
Sbjct:    62 SIQDGTELADNFLDYSVHVRDNQ--SDLVILSGILSKIGEFQAGFEDLKSKLNSSLINDV 119

Query:   137 AEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAA 196
             ++PL++ ++   L  A+   + YDR+R   +A   E++  + +    P  P    K+  +
Sbjct:   120 SDPLKS-IIKTELKQAKESKREYDRVRVAFDAHLSELANLRKQKNVKP--P----KIQES 172

Query:   197 EVKLHDLKSNMAILGKEXXXXXXXVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL 254
             E +   L++N   +G +            +  T+++L   +++  T+ Q+  + L Q+
Sbjct:   173 EEECERLRTNFERVGIDTTCLLRDTNVITEFETVEKLCDYLDSYHTFFQKGYRWLAQM 230


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.128   0.341    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      266       252   0.00082  114 3  10 23  0.47    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  208 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.75u 0.08s 31.83t   Elapsed:  00:00:02
  Total cpu time:  31.75u 0.08s 31.83t   Elapsed:  00:00:02
  Start:  Fri May 10 10:17:56 2013   End:  Fri May 10 10:17:58 2013

GO:0007165 "signal transduction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
cd07607	209	cd07607, BAR_SH3P_plant, The Bin/Amphiphysin/Rvs (	1e-109
cd07307	194	cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain	3e-16

>gnl|CDD|153291 cd07607, BAR_SH3P_plant, The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins

 Score =  313 bits (804), Expect = e-109
 Identities = 144/210 (68%), Positives = 170/210 (80%), Gaps = 1/210 (0%)

Query: 48  QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTL 107
           Q+LERLY STRA KHFQRDIVRGVEG+I TGSKQ+EIGTKL+ED +KYGS+N   +   L
Sbjct: 1   QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENPSVNTA-L 59

Query: 108 SKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE 167
           S+A+L YG AR QMEKER NL + L  QVAEPLRAMV GAPL+DARHL QRYDR+RQE E
Sbjct: 60  SRASLHYGSARNQMEKERENLHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVE 119

Query: 168 AQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQR 227
           AQA EV++R++K +E+ GNPD A KL +AE KL +LKS+M  LGKEA +AM AVE QQQ+
Sbjct: 120 AQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSMNTLGKEATSAMLAVEDQQQQ 179

Query: 228 LTLQRLIAMVEAERTYHQRVLQILDQLEGE 257
           +TLQRL+AMVEAER YHQR   ILD+L  E
Sbjct: 180 VTLQRLLAMVEAERAYHQRAADILDKLHDE 209

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 209

>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

 Score = 74.8 bits (184), Expect = 3e-16
 Identities = 43/195 (22%), Positives = 94/195 (48%), Gaps = 8/195 (4%)

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           +   + +++  +  + +  +      KLSE  ++ G +    S   L +A   +G+ + +
Sbjct: 6   EKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKE 65

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           +E+ R  L + L  +V EPL+  +    L + +   ++ D+ R + +A      ++  K+
Sbjct: 66  LEEFRDQLEQKLENKVIEPLKEYLKKD-LKEIKKRRKKLDKARLDYDA----AREKLKKL 120

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           R+   +     KL  AE +L + K     L +E    +  +E +++ L L  L++ +EA+
Sbjct: 121 RKKKKDSS---KLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEAQ 177

Query: 241 RTYHQRVLQILDQLE 255
             + + VL+IL+QL 
Sbjct: 178 SEFFKEVLKILEQLL 192

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-BAR domain and is present in Pombe/Cdc15 homology (PCH) family proteins, which include Fes/Fes tyrosine kinases, PACSIN or syndapin, CIP4-like proteins, and srGAPs, among others. The Inverse (I)-BAR or IRSp53/MIM homology Domain (IMD) is found in multi-domain proteins, such as IRSp53 and MIM, that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The I-BAR domain induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. BAR domains that also serve as protein interaction domains include those of arfaptin and OPHN1-like proteins, among others, which bind to Rac and Rho GAP domains, respectively. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
cd07607	209	BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domai	100.0
cd07307	194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	99.52
PF03114	229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	99.23
smart00721	239	BAR BAR domain.	98.75
cd07604	215	BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of	97.93
cd07639	200	BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	97.62
cd07595	244	BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR)	97.55
cd07603	200	BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of	97.47
cd07619	248	BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of	97.46
cd07606	202	BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain	97.38
cd07600	242	BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of	97.31
cd07637	200	BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	97.29
cd07634	207	BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai	97.26
cd07602	207	BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR	97.24
cd07616	229	BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do	97.22
cd07592	223	BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom	97.06
cd07594	229	BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom	97.04
cd07613	223	BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do	96.99
cd07618	246	BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of	96.98
cd07617	220	BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do	96.93
cd07593	215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	96.92
cd07638	200	BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	96.72
cd07615	223	BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do	96.53
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	96.46
cd07636	207	BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G	96.45
cd07598	211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	96.27
cd07635	207	BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of	96.22
cd07590	225	BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B	96.09
cd07588	211	BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma	96.0
cd07601	215	BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A	95.43
cd07614	223	BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do	95.42
cd07676	253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	94.46
cd07643	231	I-BAR_IMD_MIM Inverse (I)-BAR, also known as the I	90.83
cd07620	257	BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of	90.45
PF10455	289	BAR_2: Bin/amphiphysin/Rvs domain for vesicular tr	90.22
cd07605	223	I-BAR_IMD Inverse (I)-BAR, also known as the IRSp5	89.03
PF08397	219	IMD: IRSp53/MIM homology domain; InterPro: IPR0136	88.01
cd07633	207	BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of	87.6
cd07642	215	BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	87.5
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	83.33
cd07599	216	BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o	82.45

>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins

Probab=100.00  E-value=2.1e-121  Score=799.50  Aligned_cols=209  Identities=69%  Similarity=0.984  Sum_probs=206.5

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhh
Q 024505           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN  127 (266)
Q Consensus        48 Q~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~  127 (266)
                      |+|||||+|||||||||||||||||||||||+||||||+||||||||||+||| +++++||||+++||+||++|||||||
T Consensus         1 q~LekLY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~-~~~~~LsrAa~~yG~a~~~mEkEre~   79 (209)
T cd07607           1 QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENP-SVNTALSRASLHYGSARNQMEKEREN   79 (209)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCC-CcccHHHHHHHHHhHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999 57789999999999999999999999


Q ss_pred             HHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHH
Q 024505          128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM  207 (266)
Q Consensus       128 l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~M  207 (266)
                      ||++||+||+||||+||||+||||||||+|||||||||+|+||+||+|||+|+||++|||||++||++||+||+||||||
T Consensus        80 l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~M  159 (209)
T cd07607          80 LHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSM  159 (209)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024505          208 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE  257 (266)
Q Consensus       208 a~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~e  257 (266)
                      ++||||||+||++||+||||+|||||++||||||+|||||++|||+||+|
T Consensus       160 ~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~~e  209 (209)
T cd07607         160 NTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHDE  209 (209)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

Probab=99.52  E-value=3.5e-12  Score=98.06  Aligned_cols=187  Identities=23%  Similarity=0.363  Sum_probs=163.5

Q ss_pred             hhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHH
Q 024505           61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPL  140 (266)
Q Consensus        61 KhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePL  140 (266)
                      +.+=+.|++.+..++..+.+.......|++-+.++|...+..++..|+.+...||.+...++..+.++..-+...|.+||
T Consensus         6 ~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~pL   85 (194)
T cd07307           6 EKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIEPL   85 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666666677777777888889999999999999875544459999999999999999999999999999999999


Q ss_pred             HHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 024505          141 RAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA  220 (266)
Q Consensus       141 RaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~a  220 (266)
                      +..+. ..+.+.+....+|++.|.+.+.--..+.+-+.+..       +..||..++.++++.+.....+..+....|..
T Consensus        86 ~~~~~-~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~-------~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~  157 (194)
T cd07307          86 KEYLK-KDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKK-------DSSKLAEAEEELQEAKEKYEELREELIEDLNK  157 (194)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99997 55678899999999999999998887776554421       56899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024505          221 VESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (266)
Q Consensus       221 VEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~  255 (266)
                      +..........-|.+++++...||..+..++++|.
T Consensus       158 ~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~  192 (194)
T cd07307         158 LEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLL  192 (194)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            99999999999999999999999999999998875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=99.23  E-value=4.9e-09  Score=83.80  Aligned_cols=219  Identities=21%  Similarity=0.351  Sum_probs=164.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCccccchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhh------
Q 024505           13 EQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGT------   86 (266)
Q Consensus        13 eqVAkQQQAV~Kqfg~~gy~~~d~~v~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~------   86 (266)
                      -.+.+-.|.|.-.+|++     +...+|+.=-....++..+...+   ++++++    ++.|+....+-..-..      
T Consensus         3 K~~~R~~q~~~~k~g~~-----~~t~~D~~f~~~~~~~~~~~~~~---~~l~~~----~~~~~~~~~~~~~~~~~~~~~~   70 (229)
T PF03114_consen    3 KKINRAKQRVKQKLGKS-----EKTEIDEEFEELEEKFKQLEESI---KKLQKS----LKKYLDSIKKLSASQKNMKSPF   70 (229)
T ss_dssp             HHHHHHHHHHHHHHTSH-----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHHCHTHHH
T ss_pred             hHHHHHHHHHHHHcCCC-----CCCcCCHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHhhhhhHHhhhhhHHH
Confidence            45667777888888832     33336764323344444444433   344444    4445544444444555      


Q ss_pred             -hhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 024505           87 -KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (266)
Q Consensus        87 -KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQE  165 (266)
                       +|++.+..||.+...  +..++.+...||.+...++..+.++..-+.+.|.+||+..+  ..+.+...+...+++.|.+
T Consensus        71 ~~l~~~l~~~~~~~~~--~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~--~~~~~i~~~~kkr~~~~ld  146 (229)
T PF03114_consen   71 EELADALIELGSEFSD--DSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL--KEFKEIKKLIKKREKKRLD  146 (229)
T ss_dssp             HHHHHHHHHHHHCTST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHH
Confidence             999999999988652  33489999999999999999999999999999999999988  8999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQ  245 (266)
Q Consensus       166 aE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHq  245 (266)
                      .+.....+.+-+.+    ...+..       +.++++.+.....+..+-..-|-.+..-...+-..-|..+|++...||+
T Consensus       147 yd~~~~k~~k~~~~----~~~~~~-------~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~  215 (229)
T PF03114_consen  147 YDSARSKLEKLRKK----KSKSSK-------EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQ  215 (229)
T ss_dssp             HHHHHHHHHHCHTT----SSBTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh----hccccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988777765433    212222       6777777777777777777888888877777777889999999999999


Q ss_pred             HHHHHHHHhhhhh
Q 024505          246 RVLQILDQLEGEV  258 (266)
Q Consensus       246 rv~~ILd~l~~em  258 (266)
                      .+.++|..|..++
T Consensus       216 ~~~~~l~~l~~~l  228 (229)
T PF03114_consen  216 QLYQILEELQPQL  228 (229)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998775

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....

>smart00721 BAR BAR domain

Probab=98.75  E-value=1.3e-05  Score=66.57  Aligned_cols=227  Identities=17%  Similarity=0.248  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCccccchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhcccee---eeccchhhhhhhhhh
Q 024505           14 QVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYI---VTGSKQVEIGTKLSE   90 (266)
Q Consensus        14 qVAkQQQAV~Kqfg~~gy~~~d~~v~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~i---s~gsKq~Ei~~KLae   90 (266)
                      ++.|--|.|.-.+|++     +-..+||.=...-++++.+...+       ..|++.+++|+   .....-......+++
T Consensus         5 ~~~R~~q~~~ek~G~~-----e~T~~D~~f~~le~~~~~~~~~~-------~kl~k~~~~y~q~~~~~~~~~~~~~~~~~   72 (239)
T smart00721        5 QFNRAKQKVGEKVGKA-----EKTKLDEDFEELERRFDTTEAEI-------EKLQKDTKLYLQPNPAVRAKLASQKKLSK   72 (239)
T ss_pred             hhHHHHHHHHHHhCCC-----CcCcCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence            4555666777888832     34444665333333333333332       35667777777   555555555555555


Q ss_pred             hhhh-hcC--CCC-CCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 024505           91 DSRK-YGS--DNT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (266)
Q Consensus        91 Dc~k-YG~--en~-~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEa  166 (266)
                      .... |+.  ..+ ......+..+-..||.+...+-.-+..+ .-+...+..|++.-+. .-+.++.....++++.|.+-
T Consensus        73 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~-~~~~~~~~~~kk~~~~~lDy  150 (239)
T smart00721       73 SLGEVYEGGDDGEGLGADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLL-GEFKEIKKARKKLERKLLDY  150 (239)
T ss_pred             HHHHHhcCCCCccccCchhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHH-HHhHHHHHHHHHHHhHHHHH
Confidence            5444 333  111 2334457888888999999998888888 6666777778776653 34567888888888888888


Q ss_pred             HHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR  246 (266)
Q Consensus       167 E~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqr  246 (266)
                      ++.-..+.+=+.+.+    .+.+- ||..||.+|...+.....+.-+...-|..+.+=-.-.-+.-|.+.+++...||..
T Consensus       151 D~~~~kl~~~~~~~~----~~~~~-kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~  225 (239)
T smart00721      151 DSARHKLKKAKKSKE----KKKDE-KLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRE  225 (239)
T ss_pred             HHHHHHHHHHHHhcc----CChhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence            877666654333311    22233 9999999999999999999999999999997777766788999999999999999


Q ss_pred             HHHHHHHhhhhhh
Q 024505          247 VLQILDQLEGEVS  259 (266)
Q Consensus       247 v~~ILd~l~~emv  259 (266)
                      +..+|.+|...|.
T Consensus       226 ~~~~l~~l~~~l~  238 (239)
T smart00721      226 SYKLLQQLQQQLD  238 (239)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987763

>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins

Probab=97.93  E-value=0.0014  Score=58.01  Aligned_cols=196  Identities=19%  Similarity=0.286  Sum_probs=137.7

Q ss_pred             hHHHhHH-HHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHH
Q 024505           41 EAELHQH-QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARA  119 (266)
Q Consensus        41 E~Elq~H-Q~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~  119 (266)
                      |..+.+| ..|+||+.+              +-+++..|.-.++--..+++.-++.|..-...++..++.+-..||.+-.
T Consensus         8 ee~l~~~~~~l~Kl~K~--------------~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~   73 (215)
T cd07604           8 EESLEGDRVGLQKLKKA--------------VKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTK   73 (215)
T ss_pred             HHHHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHH
Confidence            3344443 467777654              4455667777777777888888888876443333358888899999999


Q ss_pred             HHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhh-hHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCC-CC-----hhhhh
Q 024505          120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAK-VRETP-GN-----PDLAL  191 (266)
Q Consensus       120 ~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR-hLaqrYdRmRQEaE~qa~eV~rRq~k-~re~~-gn-----~e~~~  191 (266)
                      .|++.+++|..-+..-|..||-..+.+ .|.+++ .+..+||+-+.+-|.-..-+.|.+.+ +++.. .-     +|...
T Consensus        74 El~~~~~~L~~~~~~~i~~pL~~f~k~-dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~~  152 (215)
T cd07604          74 ELAALFKNLMQNLNNIIMFPLDSLLKG-DLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTEITGAEIAE  152 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchhhhhhhHHH
Confidence            999999999999999999999999998 778887 99999999999888765555554333 11100 00     12222


Q ss_pred             hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024505          192 KLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEV  258 (266)
Q Consensus       192 KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~em  258 (266)
                      =|+.+....++.       =-+=...+..|++-+-.==|+.|++.+.|--+|++.-.+.|++++-=|
T Consensus       153 ~l~~~R~~F~~~-------~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~  212 (215)
T cd07604         153 EMEKERRMFQLQ-------MCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI  212 (215)
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            223322222221       112255777788777777889999999999999999999999987543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate

>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1

Probab=97.62  E-value=0.0052  Score=54.42  Aligned_cols=178  Identities=13%  Similarity=0.188  Sum_probs=134.4

Q ss_pred             hhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcC
Q 024505           67 IVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG  146 (266)
Q Consensus        67 IVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~G  146 (266)
                      +|+.+-++|..|....--..+++..-+.+|.+.+  .+..++.+-..|+.+-..|++.|..|+.-...-+..||-..+.+
T Consensus        21 l~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~--~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~   98 (200)
T cd07639          21 LVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGP--KDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKE   98 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4445556666677777777778888888887643  33347777788999999999999999999999999999998876


Q ss_pred             CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 024505          147 APLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQ  226 (266)
Q Consensus       147 aPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQ  226 (266)
                       +|-+++....+||+..+.-+.-..-..+    ++  -.-|   .-++.|+.-|.--++.-.-.-=+=+..+..|++-.-
T Consensus        99 -dl~~vKe~kK~FdK~s~~~d~al~K~~~----~~--k~k~---~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKk  168 (200)
T cd07639          99 -DLRGFRDARKEFERGAESLEAALQHNAE----TP--RRKA---QEVEEAAAALLGARATFRDRALDYALQINVIEDKKK  168 (200)
T ss_pred             -hhHHHHHHhhhHhhcchhHHHHHHHHhh----cc--ccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             6788999999999999988875322221    11  0011   134666666776676666666666777777877777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024505          227 RLTLQRLIAMVEAERTYHQRVLQILDQLEG  256 (266)
Q Consensus       227 rlTlQRLiaMVeaEr~YHqrv~~ILd~l~~  256 (266)
                      =-=|+.|++.+.|=.+|++.--++|++|+.
T Consensus       169 fefle~ll~~m~a~~tfF~qG~ell~~l~~  198 (200)
T cd07639         169 FDILEFMLQLMEAQASFFQQGHEALSALHQ  198 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            777899999999999999999999998863

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins

Probab=97.55  E-value=0.014  Score=52.55  Aligned_cols=162  Identities=15%  Similarity=0.232  Sum_probs=111.5

Q ss_pred             hhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 024505           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (266)
Q Consensus        87 KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEa  166 (266)
                      -|+..--+||.+=+  .++.|.+|-..||.+-+.+=.+|.++...+-+.|.+||+....+-        -.-+.+-|.-+
T Consensus        61 ~Lg~~M~~~g~~l~--~~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~d--------ik~i~k~RKkL  130 (244)
T cd07595          61 GLAQSMLESSKELP--DDSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVE--------IPNIQKQKKRL  130 (244)
T ss_pred             HHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence            45555667777753  455799999999999999999999999999999999999876521        23445555555


Q ss_pred             HHH--HHHHHHHHhh-h-cCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          167 EAQ--AIEVSKRQAK-V-RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERT  242 (266)
Q Consensus       167 E~q--a~eV~rRq~k-~-re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~  242 (266)
                      +.-  .-|.+|++.+ . |+++ ...+..|....+..|.+...-+..---.|+..|-.|=+=-- =-+.-|..+|+|...
T Consensus       131 e~~RLd~D~~k~r~~ka~k~~~-~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~-e~~~~l~~lv~aQl~  208 (244)
T cd07595         131 SKLVLDMDSARSRYNAAHKSSG-GQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAKEA-EIASYLIDLIEAQRE  208 (244)
T ss_pred             hhhhHHHHHHHHHHHhcccccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHH
Confidence            543  3455565553 2 3333 34455666555555555555555555566667765533210 124568999999999


Q ss_pred             HHHHHHHHHHHhhhhhhh
Q 024505          243 YHQRVLQILDQLEGEVSN  260 (266)
Q Consensus       243 YHqrv~~ILd~l~~emvs  260 (266)
                      ||.+.++||+.+-.+|-.
T Consensus       209 YH~~a~e~L~~l~~~l~~  226 (244)
T cd07595         209 YHRTALSVLEAVLPELQE  226 (244)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999988754

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and

>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins

Probab=97.47  E-value=0.016  Score=50.77  Aligned_cols=179  Identities=12%  Similarity=0.237  Sum_probs=131.6

Q ss_pred             hhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhh
Q 024505           65 RDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMV  144 (266)
Q Consensus        65 rdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv  144 (266)
                      ..|++++-++|..|.....-...++..-..+|.+  |..+..++-+-..||.+-..|+..+..|+.-...-|.+||+..+
T Consensus        19 ~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~--~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~   96 (200)
T cd07603          19 EKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDY--FRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFV   96 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666777777777677777777777776  44455688888899999999999999999999999999999999


Q ss_pred             cCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 024505          145 LGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQ  224 (266)
Q Consensus       145 ~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQ  224 (266)
                      .+ .|-+.+-+..+||+.-..-++-..--+. .+|.|     |   .-++.|+.-|..-++.---.-=+=...+..|.+-
T Consensus        97 k~-dL~~vKE~kk~Fdk~s~~yd~al~k~~~-~~K~K-----~---~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~k  166 (200)
T cd07603          97 KE-DIKKVKESKKHFEKISDDLDNALVKNAQ-APRSK-----P---QEAEEATNILTATRSCFRHTALDYVLQINVLQAK  166 (200)
T ss_pred             HH-hhHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCC-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87 5778899999999999888875442111 22222     1   1344455555555555544444556677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024505          225 QQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (266)
Q Consensus       225 QQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~  255 (266)
                      .-=-=|+.|++.+.|=-+|.+.-.+++++|+
T Consensus       167 Kk~e~le~ll~~~~A~~tff~qG~el~~dl~  197 (200)
T cd07603         167 KRHEILSTLLSYMHAQFTFFHQGYDLLEDLE  197 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            6666788899999999999888888888775

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2

Probab=97.46  E-value=0.016  Score=52.99  Aligned_cols=200  Identities=13%  Similarity=0.159  Sum_probs=121.6

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhccceeee--ccchhhhh-----hhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHH
Q 024505           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVT--GSKQVEIG-----TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARA  119 (266)
Q Consensus        47 HQ~LekLY~STRaaKhFQrdIVRgvEG~is~--gsKq~Ei~-----~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~  119 (266)
                      .++|||---+|+..   =-+|++-++.++--  |+.-=-..     +-|++.+-+||.+=+  .++.|.+|-..||.+-+
T Consensus        17 ~~~le~r~D~~k~~---~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~L~q~M~~~g~elg--~~s~lg~aL~~~gea~~   91 (248)
T cd07619          17 LLQVEKRLELVKQV---SHSTHKKLTACLQGQQGVDADKRSKKLPLTTLAQCMVEGAAVLG--DDSLLGKMLKLCGETED   91 (248)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHhCCCcHHHHHHhccCCCHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHH
Confidence            45666665555443   34666666655532  11100111     248999999999964  35579999999999999


Q ss_pred             HHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCC--CChh-hhhhHH
Q 024505          120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAK--VRETP--GNPD-LALKLD  194 (266)
Q Consensus       120 ~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k--~re~~--gn~e-~~~KLq  194 (266)
                      .|=.+|.++--.+-..|.+||+....+- |-.+-|-...-...|-+.     |..|+|.+  ++.++  +|.+ +..|.+
T Consensus        92 kla~a~~~~d~~i~~~fl~PL~~~le~d-lk~I~k~RK~Le~~RLD~-----D~~K~r~~~a~~~~~~~~~~~~~~~k~e  165 (248)
T cd07619          92 KLAQELILFELQIERDVVEPLYVLAEVE-IPNIQKQRKHLAKLVLDM-----DSSRTRWQQSSKSSGLSSNLQPTGAKAD  165 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhHhhH-----HHHHHHHHhccccccccccccCCCCccH
Confidence            9999999999999999999999887743 222222222333333332     23444433  11111  1111 133444


Q ss_pred             HHHHHHHHHHHHHH----HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024505          195 AAEVKLHDLKSNMA----ILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEVSNCS  262 (266)
Q Consensus       195 ~AE~Kl~Elks~Ma----~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~emvse~  262 (266)
                      .+...+.+....+.    .+=-++..-|.-+..|=..     |+..|+|=-.||.+.++||+.+..+|-.-+
T Consensus       166 ~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~-----l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~  232 (248)
T cd07619         166 ALREEMEEAANRMEICRDQLSADMYSFVAKEIDYANY-----FQTLIEVQAEYHRKSLELLQSVLPQIKAHQ  232 (248)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444    2223333334444443322     999999999999999999999998876544

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC)

Probab=97.38  E-value=0.025  Score=49.86  Aligned_cols=183  Identities=15%  Similarity=0.206  Sum_probs=139.1

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHH----HHHHHhhHHHHHHH
Q 024505           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLS----KAALSYGRARAQME  122 (266)
Q Consensus        47 HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~La----rAa~~yg~a~~~mE  122 (266)
                      -.+|+|||.+.+.--+=+++              -.--...++..-..||..   +.+..+.    .+-..|+.+-..|+
T Consensus        14 ~~~~~Kl~K~~~~~~~a~~~--------------~~~a~~~Fa~~L~~f~~~---~dD~~~~a~gg~~l~kF~~~l~ei~   76 (202)
T cd07606          14 RDRSLKLYKGCRKYRDALGE--------------AYDGDSAFAESLEEFGGG---HDDPISVAVGGPVMTKFTSALREIG   76 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhcCC---CCChHHHhccchHHHHHHHHHHHHH
Confidence            45778888776652222222              222334455666666642   2333333    46678999999999


Q ss_pred             HHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHH
Q 024505          123 KERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHD  202 (266)
Q Consensus       123 kEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~E  202 (266)
                      ..|+.|+.-...-+..||...+. --|-+++.+..+||+-..+-++-..-.+.-..+.|+        .+++.|+..|.-
T Consensus        77 ~~~~~L~~q~~~~l~~pL~~F~k-~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~--------~~~~ea~~~l~~  147 (202)
T cd07606          77 SYKEVLRSQVEHMLNDRLAQFAD-TDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKP--------EILAAAEEDLGT  147 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCch--------HHHHHHHHHHHH
Confidence            99999999999999999999998 567789999999999999999866655543333221        346788888988


Q ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024505          203 LKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (266)
Q Consensus       203 lks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~  255 (266)
                      .++..--..-+=..++..|++-.-=-.|+.|++.+.|=-+|++.-.++|.+|+
T Consensus       148 ~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~  200 (202)
T cd07606         148 TRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLE  200 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88888888888889999999988888899999999999999999999998875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins

Probab=97.31  E-value=0.023  Score=51.42  Aligned_cols=222  Identities=17%  Similarity=0.226  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcc--ccchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhccceeeeccc-h-hhhhhhh
Q 024505           13 EQVARQQQAVFKQFGGGGYGGSDNV--VTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSK-Q-VEIGTKL   88 (266)
Q Consensus        13 eqVAkQQQAV~Kqfg~~gy~~~d~~--v~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsK-q-~Ei~~KL   88 (266)
                      +.|=+-=+.|-+.|..-||--.-++  .+.+---.-+.+..-|=..| ...+.|.-++-      ..++. + =-...-|
T Consensus        11 k~~~~~~l~vt~~ye~esYDYP~n~~es~~~~~~~~~~k~~~l~~~t-~~~e~~~~l~~------~~~~~~~pkTl~~aL   83 (242)
T cd07600          11 KLVYKKILKVTKTYENESYDYPPNLTESISDFSKTIGSKVSELSKAT-SPTEAQKVLLG------TPAPAKLPKTLNHAL   83 (242)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHhhHHHHHHHhhcC-ChhhhhhhhcC------CCCCCCCCCcHHHHH
Confidence            4455556788899998888322221  12222222344444444433 34556655532      11211 1 1233456


Q ss_pred             hhhhhhhcCCCCC---CcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 024505           89 SEDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (266)
Q Consensus        89 aeDc~kYG~en~~---~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQE  165 (266)
                      ++.+-++|.+-..   .+++.|++|-..||.+...|-.-|..+-..+.+-+.+||+.-..+-        -..+.+.|.-
T Consensus        84 s~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d--------~k~i~k~RKk  155 (242)
T cd07600          84 SRAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTS--------FQKAHKARKK  155 (242)
T ss_pred             HHHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence            6666666655332   2367899999999999999999999999999999999999876542        2356677777


Q ss_pred             HHHHHHHHHHHHhhhcCC---CCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          166 AEAQAIEVSKRQAKVRET---PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERT  242 (266)
Q Consensus       166 aE~qa~eV~rRq~k~re~---~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~  242 (266)
                      +|.--.+.--.+.|.+..   ...++--..++.||.++.+-+       -.|.-.|..|-.-=  --++=|..+|+|.-.
T Consensus       156 le~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~-------E~a~~~M~~il~~~--e~i~~L~~fv~AQl~  226 (242)
T cd07600         156 VEDKRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVSAT-------EEAVELMKEVLDNP--EPLQLLKELVKAQLA  226 (242)
T ss_pred             HHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhH-------HHHHHHHHHHHhhh--HHHHHHHHHHHHHHH
Confidence            776554433333333222   122333455667777776655       34445555443331  146778899999999


Q ss_pred             HHHHHHHHHHHhhhhh
Q 024505          243 YHQRVLQILDQLEGEV  258 (266)
Q Consensus       243 YHqrv~~ILd~l~~em  258 (266)
                      ||....++|..|..++
T Consensus       227 Yh~~~~e~L~~l~~~~  242 (242)
T cd07600         227 YHKTAAELLEELLSVL  242 (242)
T ss_pred             HHHHHHHHHHHHhhcC
Confidence            9999999999987653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3

Probab=97.29  E-value=0.034  Score=48.90  Aligned_cols=144  Identities=15%  Similarity=0.271  Sum_probs=113.3

Q ss_pred             cchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 024505          103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRE  182 (266)
Q Consensus       103 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re  182 (266)
                      .+..++.+-..||.+-..|+..|..|+.-...-+.+||+.-+.+ .|-..+-+..+||+....-++-..-.+  ++|.+ 
T Consensus        55 gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~-dL~~~KE~rK~Fdk~se~yd~al~k~~--~~k~k-  130 (200)
T cd07637          55 KDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKE-DVRKFKETKKQFDKVREDLEIALVKNA--QAPRH-  130 (200)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCC-
Confidence            34457778888999999999999999999999999999999886 567788999999999888876654432  22322 


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024505          183 TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG  256 (266)
Q Consensus       183 ~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~  256 (266)
                         .|   .-++.|+.-|.+-+++---.-=+=..++..|++-.-=-=|+.|++.+.|=-+|+..--+++++|+.
T Consensus       131 ---k~---~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~p  198 (200)
T cd07637         131 ---KP---HEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDP  198 (200)
T ss_pred             ---Ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence               12   234666666776666665555566778888888777777899999999999999999999998864

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like

Probab=97.26  E-value=0.023  Score=50.85  Aligned_cols=182  Identities=12%  Similarity=0.170  Sum_probs=126.0

Q ss_pred             hhhhhhccceeeeccchhhhhhhhhhhhhhhcCCC---CCCcch-HHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHH
Q 024505           65 RDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN---TCTSGN-TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPL  140 (266)
Q Consensus        65 rdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en---~~~~~~-~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePL  140 (266)
                      ++||+..-++|..|..=.--..+++.--+.+|-+-   +.+++. .++-+-..|+.--..|+.+|+.|+.-...-|..||
T Consensus        19 k~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~l~~pL   98 (207)
T cd07634          19 KELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDVLIAPL   98 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444333333334444444444221   112222 58889999999999999999999999999999999


Q ss_pred             HHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 024505          141 RAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA  220 (266)
Q Consensus       141 RaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~a  220 (266)
                      -..+.+ +|-+++....+||+-...-++-..--.. .+|.+    .   -.-++.|+.-|.--++.---.-=+=+-.+..
T Consensus        99 ~~f~k~-dl~~vKe~kK~FDK~se~y~~aleK~l~-l~~~k----k---~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~~  169 (207)
T cd07634          99 EKFRKE-QIGAAKDGKKKFDKESEKYYSILEKHLN-LSAKK----K---ESHLQRADTQIDREHQNFYEASLEYVFKIQE  169 (207)
T ss_pred             HHHHHH-HHHHHHHHccchhHHHhHHHHHHHHHHh-ccccC----C---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999876 5789999999999999998763322111 11111    1   1245777777777776665555566667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024505          221 VESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (266)
Q Consensus       221 VEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~  255 (266)
                      |++-.-===|+.|++.+.|=.+|.+.-.+++++++
T Consensus       170 vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~  204 (207)
T cd07634         170 VQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFA  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            77776666789999999999999999999998875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain

>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins

Probab=97.24  E-value=0.027  Score=50.29  Aligned_cols=182  Identities=14%  Similarity=0.222  Sum_probs=126.5

Q ss_pred             hhhhhccceeeeccchhhhhhhhhhhhhhhcCCC---CCCcc-hHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHH
Q 024505           66 DIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN---TCTSG-NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLR  141 (266)
Q Consensus        66 dIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en---~~~~~-~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLR  141 (266)
                      .||++.-++|..|..-.---..++..-+-|+-+-   +.+.+ ..++.+-..||..-..||.+|+.|+.-....+..||.
T Consensus        20 kLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL~   99 (207)
T cd07602          20 ELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLENAEEQLIEPLE   99 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455544444444455565555555331   11222 1367778889999999999999999999999999999


Q ss_pred             HhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 024505          142 AMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV  221 (266)
Q Consensus       142 aMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aV  221 (266)
                      .-+. -+|-+++-...+||+-..+-+.-..--+.=..+.|+        .-++.|+.-|.--+++---.-=+=+.++..|
T Consensus       100 ~F~k-~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~--------~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~v  170 (207)
T cd07602         100 KFRK-EQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKE--------NQLQEADAQLDMERRNFHQASLEYVFKLQEV  170 (207)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987 788999999999999998888655432221111111        2356677666666666555555667778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024505          222 ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG  256 (266)
Q Consensus       222 EaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~  256 (266)
                      ++-..=-=|+.|++.+.|=-+|...--+++.+++.
T Consensus       171 q~rKkfefle~ll~~m~a~~tff~qG~el~~d~~p  205 (207)
T cd07602         171 QERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFKP  205 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence            87776667888999999999998888888887753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1

>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1

Probab=97.22  E-value=0.032  Score=50.46  Aligned_cols=154  Identities=16%  Similarity=0.245  Sum_probs=106.0

Q ss_pred             hhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 024505           86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (266)
Q Consensus        86 ~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQE  165 (266)
                      .-|++..-+||.+=.  .++.+..|-..||.|.+.|=.-|.+|.....+-+..||+.-..+        --..|..-|.-
T Consensus        72 ~~Lg~~M~~~g~~~g--~~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~--------dik~i~k~RKk  141 (229)
T cd07616          72 ELLGQYMIDAGNEFG--PGTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEG--------DYKTITKERKL  141 (229)
T ss_pred             HHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence            568888899999854  45579999999999999999999999998899999999998876        22245556666


Q ss_pred             HHHHHHH--HHHHHhh-hcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 024505          166 AEAQAIE--VSKRQAK-VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAER  241 (266)
Q Consensus       166 aE~qa~e--V~rRq~k-~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEa-QQQrlTlQRLiaMVeaEr  241 (266)
                      +|..-.+  ..|++.+ .+.....+..-.+|..||.|+.+-+.-+       ...|--|-. --  =-+.=|.+.|+|.-
T Consensus       142 Le~rRLdyD~~K~r~~kAk~~~~~~~~e~elr~ae~efees~E~a-------~~~m~~i~~~~~--e~~~~L~~lv~AQl  212 (229)
T cd07616         142 LQNKRLDLDAAKTRLKKAKVAEARAAAEQELRITQSEFDRQAEIT-------RLLLEGISSTHA--HHLRCLNDFVEAQM  212 (229)
T ss_pred             HHHHHHHHHHHHHHHhcCCcchhhcchHHHHHHHHHHHHHHHHHH-------HHHHHhhhhcCh--HHHHHHHHHHHHHH
Confidence            6665444  4444333 1111222333556777888877654322       222222211 00  02456889999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 024505          242 TYHQRVLQILDQLEGEV  258 (266)
Q Consensus       242 ~YHqrv~~ILd~l~~em  258 (266)
                      .||....+||..|..++
T Consensus       213 ~Yh~~~~e~L~~L~~~l  229 (229)
T cd07616         213 TYYAQCYQYMLDLQKQL  229 (229)
T ss_pred             HHHHHHHHHHHHHHhhC
Confidence            99999999999998763

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact

>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A

Probab=97.06  E-value=0.083  Score=47.29  Aligned_cols=151  Identities=23%  Similarity=0.355  Sum_probs=103.5

Q ss_pred             hhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 024505           86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (266)
Q Consensus        86 ~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQE  165 (266)
                      .-|++.+-+||.+=.  .++.++.|-..||.|..++=..|..+--.+.+-+.+||+.-..+-        -..|...|.-
T Consensus        67 ~~Lg~~M~~~g~elg--~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~d--------ik~i~k~RKk  136 (223)
T cd07592          67 GLLGEVMLKYGRELG--EDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKD--------LKEINHHRKK  136 (223)
T ss_pred             cHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence            568899999999964  345799999999999999999999999999999999999654321        1245555665


Q ss_pred             HHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 024505          166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAERTYH  244 (266)
Q Consensus       166 aE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEa-QQQrlTlQRLiaMVeaEr~YH  244 (266)
                      +|..-.+.--.++|...   .++  .-|..||.|+.+-+.-       |...|-.+-. .--  -+.=|...|+|...||
T Consensus       137 Le~rRLdyD~~k~k~~k---~~e--eEl~~Ae~kfe~s~E~-------a~~~M~~il~~e~e--~~~~L~~lveAQl~Yh  202 (223)
T cd07592         137 LEGRRLDYDYKKRKQGK---GPD--EELKQAEEKFEESKEL-------AENSMFNLLENDVE--QVSQLSALVEAQLDYH  202 (223)
T ss_pred             HHHHHHHHHHHHHhccc---Cch--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCchH--HHHHHHHHHHHHHHHH
Confidence            55544433322223221   122  3466777777765432       2233322211 001  1345889999999999


Q ss_pred             HHHHHHHHHhhhhhhh
Q 024505          245 QRVLQILDQLEGEVSN  260 (266)
Q Consensus       245 qrv~~ILd~l~~emvs  260 (266)
                      ...++||..|..+|-.
T Consensus       203 ~~~~e~L~~l~~~L~~  218 (223)
T cd07592         203 RQSAEILEELQSKLQE  218 (223)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998864

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra

>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B

Probab=97.04  E-value=0.13  Score=46.35  Aligned_cols=152  Identities=18%  Similarity=0.314  Sum_probs=105.1

Q ss_pred             hhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 024505           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (266)
Q Consensus        87 KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEa  166 (266)
                      -|++-.-+||.+=.  .++.++.|-..||.|...|=.-|..+...+.+-+.+||+....+-        -.-|..-|.-+
T Consensus        73 ~Lg~~M~~~g~~lg--~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~d--------ik~i~k~RKkL  142 (229)
T cd07594          73 QLGQAMIEAGNDFG--PGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGD--------MKTISKERKLL  142 (229)
T ss_pred             HHHHHHHHHHhhCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence            68888899999864  345799999999999999999999999999999999999876532        12344555555


Q ss_pred             HHHHHHHHHHHhhhcCC---CCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 024505          167 EAQAIEVSKRQAKVRET---PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAERT  242 (266)
Q Consensus       167 E~qa~eV~rRq~k~re~---~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEa-QQQrlTlQRLiaMVeaEr~  242 (266)
                      |..-.+.--.++|.+.+   ...+..-..|+.|+.|..+-+.       .|...|-.|-. .-  =-+.-|-+.|+|+-.
T Consensus       143 e~rRLd~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF~~~~E-------~a~~~M~~i~~~~~--~~~~~L~~lv~AQl~  213 (229)
T cd07594         143 ENKRLDLDACKTRVKKAKSAEAIEQAEQDLRVAQSEFDRQAE-------ITKLLLEGISSTHA--NHLRCLRDFVEAQMT  213 (229)
T ss_pred             HHHHHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCc--hHHHHHHHHHHHHHH
Confidence            55444333333333322   1113345667778888776543       33344443322 11  124568899999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 024505          243 YHQRVLQILDQLEGE  257 (266)
Q Consensus       243 YHqrv~~ILd~l~~e  257 (266)
                      ||....+||..|..+
T Consensus       214 Yh~q~~e~L~~l~~~  228 (229)
T cd07594         214 YYAQCYQYMDDLQRQ  228 (229)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999999765

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.

>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1

Probab=96.99  E-value=0.078  Score=47.94  Aligned_cols=150  Identities=19%  Similarity=0.265  Sum_probs=101.9

Q ss_pred             hhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 024505           86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (266)
Q Consensus        86 ~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQE  165 (266)
                      .-|++.--+||.+=+  .++.+..|-..||.|.++|=..+..+--...+-+.+||+....+-        -.-|..-|.-
T Consensus        67 ~~Lg~~M~~~G~elg--~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~d--------ik~i~k~RKk  136 (223)
T cd07613          67 ALLAEAMLKFGRELG--DECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKD--------LREIQHHLKK  136 (223)
T ss_pred             hHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence            346777778888864  455799999999999999999999999999999999999864332        1133444554


Q ss_pred             HHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 024505          166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERT  242 (266)
Q Consensus       166 aE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aV---EaQQQrlTlQRLiaMVeaEr~  242 (266)
                      .|..-.+.--.+.|..  .. +  -.-++.|+.|..+-+.-..       ..|-.+   |.-|    +.=|.+.|||+-.
T Consensus       137 Le~rRLd~D~~K~r~~--k~-~--eeElr~A~~kFees~E~a~-------~~M~n~l~~e~e~----~~~L~~fveAQl~  200 (223)
T cd07613         137 LEGRRLDFDYKKKRQG--KI-P--DEELRQALEKFDESKEIAE-------SSMFNLLEMDIEQ----VSQLSALVQAQLE  200 (223)
T ss_pred             HHHHHHhHHHHHHhCC--CC-c--HHHHHHHHHHHHHHHHHHH-------HHHHHHHHcCchH----HHHHHHHHHHHHH
Confidence            4444333322222222  21 1  3457788888887665322       222221   1111    2368899999999


Q ss_pred             HHHHHHHHHHHhhhhhhhc
Q 024505          243 YHQRVLQILDQLEGEVSNC  261 (266)
Q Consensus       243 YHqrv~~ILd~l~~emvse  261 (266)
                      ||+..++||..|..++-.-
T Consensus       201 Yh~qa~eiL~~l~~~l~~~  219 (223)
T cd07613         201 YHKQATQILQQVTVKLEDR  219 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987643

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i

>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1

Probab=96.98  E-value=0.1  Score=47.74  Aligned_cols=196  Identities=14%  Similarity=0.223  Sum_probs=125.9

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchh--h------hhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHH
Q 024505           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQV--E------IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRAR  118 (266)
Q Consensus        47 HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~--E------i~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~  118 (266)
                      -++||+---+|+..   =-+|++.++.+. -|..-.  |      -..-|++.--+||.+=+  .++.+.+|-..||.+-
T Consensus        17 ~~~le~r~D~~k~~---~~~i~k~~~~~l-qpnp~~r~ek~~kk~p~~~Lgq~M~e~~~~lg--~~s~~g~aL~~~gea~   90 (246)
T cd07618          17 LLQIERRLDTVRSV---SHNVHKRLIACF-QGQVGTDAEKRHKKLPLTALAQNMQEGSAQLG--EESLIGKMLDTCGDAE   90 (246)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHc-CCChHHHHHHHhccCCHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHH
Confidence            45666666665543   335666666553 121111  1      13456777778888854  3556999999999999


Q ss_pred             HHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCC-hhhhhh---
Q 024505          119 AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV--RETPGN-PDLALK---  192 (266)
Q Consensus       119 ~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~--re~~gn-~e~~~K---  192 (266)
                      +.+=.+|-++--.+-..|.+||+....+- |-++-+....-...|-+.+     ..|++.+.  +.+++| ..+..|   
T Consensus        91 ~kla~~~~~~d~~ie~~fl~PL~~~le~d-lk~I~K~RkkLe~~RLD~D-----~~K~r~~~a~~~~~~~~~~~~~K~~~  164 (246)
T cd07618          91 NKLAFELSQHEVLLEKDILDPLNQLAEVE-IPNIQKQRKQLAKLVLDWD-----SARGRYNQAHKSSGTNFQAMPSKIDM  164 (246)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhHHhhHH-----HHHHHHHhccccCccccccccchhhh
Confidence            99999998888888889999999887743 2233333333344444433     33443321  112222 122445   


Q ss_pred             ----HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024505          193 ----LDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEVSNCS  262 (266)
Q Consensus       193 ----Lq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~emvse~  262 (266)
                          +..|+.|+.+-|...+.   ++-.-| +=|..+    +.=|+..|+|=..||...++||+.+..+|-.-+
T Consensus       165 l~ee~e~a~~k~E~~kD~~~~---dm~~~l-~~e~e~----~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~~  230 (246)
T cd07618         165 LKEEMDEAGNKVEQCKDQLAA---DMYNFA-SKEGEY----AKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQ  230 (246)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH---HHHHHH-HcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                57888888888877665   444333 333333    345889999999999999999999999987766

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.

>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2

Probab=96.93  E-value=0.087  Score=47.68  Aligned_cols=183  Identities=15%  Similarity=0.241  Sum_probs=123.1

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhccceeeec--cch---------------hhhhhhhhhhhhhhcCCCCCCcchHHHH
Q 024505           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTG--SKQ---------------VEIGTKLSEDSRKYGSDNTCTSGNTLSK  109 (266)
Q Consensus        47 HQ~LekLY~STRaaKhFQrdIVRgvEG~is~g--sKq---------------~Ei~~KLaeDc~kYG~en~~~~~~~Lar  109 (266)
                      .++|++.--+|+..   =.+|++.+|-|+---  ++-               .--..-|++..-+||.+-.  .++.+..
T Consensus        19 f~~l~~~~D~tk~~---~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g--~~s~~G~   93 (220)
T cd07617          19 FENLLARADSTKNW---TEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTEAANDFG--PGTPYGK   93 (220)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcC--CCCchHH
Confidence            45666666666543   346666666655321  110               1113347888889998854  3456999


Q ss_pred             HHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhh
Q 024505          110 AALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDL  189 (266)
Q Consensus       110 Aa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~  189 (266)
                      |-..||.|...|=.-+..+.-...+-+.+||+....+-        -.-|..-|.-+|..-.+.-..++|.+.    +| 
T Consensus        94 aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~d--------lk~i~k~RKkLe~rRLd~D~~K~r~~k----ae-  160 (220)
T cd07617          94 TLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGD--------WKTISKERRLLQNRRLDLDACKARLKK----AE-  160 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhc----cH-
Confidence            99999999999999999999999999999999876542        123556667777665555555555442    34 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024505          190 ALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVE-SQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE  257 (266)
Q Consensus       190 ~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVE-aQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~e  257 (266)
                       ..|+.|+.|..+-+. .+.      ..|--|- ..-  =.+.=|-+.|+|...||....+||..|..+
T Consensus       161 -~elr~A~~kf~~~~E-~a~------~~M~~il~~~~--e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~~  219 (220)
T cd07617         161 -HELRVAQTEFDRQAE-VTR------LLLEGISSTHV--NHLRCLHEFVEAQATYYAQCYRHMLDLQKQ  219 (220)
T ss_pred             -HHHHHHHHHHHHHHH-HHH------HHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             378899999887544 222      2232221 100  125568899999999999999999999875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins

Probab=96.92  E-value=0.13  Score=45.98  Aligned_cols=157  Identities=16%  Similarity=0.261  Sum_probs=107.2

Q ss_pred             hhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHH
Q 024505           85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ  164 (266)
Q Consensus        85 ~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQ  164 (266)
                      ..-|++.--.||.+=+  .++.+..|-..||.|.++|-...++|..-+.+-+.+||+-.+.     |-+    -|..-|.
T Consensus        53 ~~~Lg~~M~~~g~~lg--~dS~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~-----~~k----~i~k~RK  121 (215)
T cd07593          53 VEALGLVMINHGEEFP--QDSEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA-----EMK----EYHSARK  121 (215)
T ss_pred             HHHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----HHHHHHH
Confidence            4467777778888864  4556999999999999999999999999999999999986652     222    4566677


Q ss_pred             HHHHHHHHHHHHHhhhcCCC-CChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 024505          165 EAEAQAIEVSKRQAKVRETP-GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAERT  242 (266)
Q Consensus       165 EaE~qa~eV~rRq~k~re~~-gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEa-QQQrlTlQRLiaMVeaEr~  242 (266)
                      -+|..-.+.--.++|.+.+. ..+..-.-|+.|+.|..+-+.-       |...|-.|-. .--  -+.=|...|+|.-.
T Consensus       122 kLe~rRLdyD~~ksk~~kak~~~~~~eeElr~Ae~kfees~E~-------a~~~M~~i~~~e~e--~~~~L~~lv~AQl~  192 (215)
T cd07593         122 KLESRRLAYDAALTKSQKAKKEDSRLEEELRRAKAKYEESSED-------VEARMVAIKESEAD--QYRDLTDLLDAELD  192 (215)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChH--HHHHHHHHHHHHHH
Confidence            77766665555554443221 1222334456677777665432       3333433321 111  13457889999999


Q ss_pred             HHHHHHHHHHHhhhhhhhc
Q 024505          243 YHQRVLQILDQLEGEVSNC  261 (266)
Q Consensus       243 YHqrv~~ILd~l~~emvse  261 (266)
                      ||...++||..|..+.-+.
T Consensus       193 Yh~q~~e~L~~l~~~~~~~  211 (215)
T cd07593         193 YHQQSLDVLREVRQSWPSK  211 (215)
T ss_pred             HHHHHHHHHHHHHHhccCC
Confidence            9999999999999876543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol

>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2

Probab=96.72  E-value=0.18  Score=44.82  Aligned_cols=183  Identities=12%  Similarity=0.230  Sum_probs=134.0

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhh
Q 024505           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN  127 (266)
Q Consensus        48 Q~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~  127 (266)
                      .+|+|||..-+.--+.+++-+.+...|+. |-          .|-.+||++.+ ..+++|.    .|+.+-..|+..|+.
T Consensus        16 ~~l~Kl~K~~~~~~dag~~~~~a~~~F~~-~l----------~d~~~~~~~De-~i~~~l~----kF~~~l~ei~~~~~~   79 (200)
T cd07638          16 LKLDKLVKLCIGMIDAGKAFCQANKQFMN-GI----------RDLAQYSSKDA-VIETSLT----KFSDTLQEMINYHTI   79 (200)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HH----------HHHHHhCCcch-hhHHHHH----HHHHHHHHHHHHHHH
Confidence            57888888887777777777666555532 11          23455777765 2344454    599999999999999


Q ss_pred             HHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHH
Q 024505          128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM  207 (266)
Q Consensus       128 l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~M  207 (266)
                      |+.-...-+..||..-+.. +|-+++-...+||+..++-++-..--++= +|.|        ..-++.|+.-|.--++.-
T Consensus        80 L~~q~~~~l~~~L~~F~k~-dl~~vke~kk~FdK~s~~~~~aL~K~~~~-~k~k--------~~e~eEa~~~l~~~r~~F  149 (200)
T cd07638          80 LFDQAQRSIKAQLQTFVKE-DLRKFKDAKKQFDKVSEEKENALVKNAQV-QRNK--------QHEVEEATNILTATRKCF  149 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhHHHHHHHHHhccC-CcCc--------hHHHHHHHHHHHHHHHHH
Confidence            9999999999999887764 66789999999999997666543221111 0111        123466777777777777


Q ss_pred             HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024505          208 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG  256 (266)
Q Consensus       208 a~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~  256 (266)
                      .-..=+=+.++..|++-.-=-=|+.|++.+.|=.+|...--++|++++-
T Consensus       150 ~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~p  198 (200)
T cd07638         150 RHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELGP  198 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence            6666677888888888887778899999999999999999999988863

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3

Probab=96.53  E-value=0.27  Score=44.50  Aligned_cols=148  Identities=19%  Similarity=0.297  Sum_probs=102.0

Q ss_pred             hhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 024505           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (266)
Q Consensus        87 KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEa  166 (266)
                      -|++.--+||.+=+  .++.+..|-..||.|...+=..+..+.-...+-+.+||+....+-        -.-|..-|.-.
T Consensus        68 ~Lg~~M~~~G~~lg--~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~d--------ik~i~k~RKkL  137 (223)
T cd07615          68 LLGDCMLRYGRELG--EESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKD--------LKEIGHHLKKL  137 (223)
T ss_pred             HHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence            46777778888854  345699999999999999999999999999999999999654432        11334445545


Q ss_pred             HHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 024505          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTY  243 (266)
Q Consensus       167 E~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aV---EaQQQrlTlQRLiaMVeaEr~Y  243 (266)
                      |..-.+.--.+.|  .+. .  .-.-++.|+.|..|-+.-       |...|-.+   |.-|    +.=|.+.|+|+-.|
T Consensus       138 e~rRLd~D~~K~r--~~k-~--~~eE~~~A~~kfees~E~-------a~~~M~n~le~e~e~----~~~L~~lv~AQl~Y  201 (223)
T cd07615         138 EGRRLDFDYKKKR--QGK-I--PDEEIRQAVEKFEESKEL-------AERSMFNFLENDVEQ----VSQLSVLIEAALDY  201 (223)
T ss_pred             HHHHHHHHHHHHc--CCC-C--cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcChHH----HHHHHHHHHHHHHH
Confidence            5444333333223  222 1  244577888888876542       33344332   1222    34578999999999


Q ss_pred             HHHHHHHHHHhhhhhhh
Q 024505          244 HQRVLQILDQLEGEVSN  260 (266)
Q Consensus       244 Hqrv~~ILd~l~~emvs  260 (266)
                      |+..++||..|..++-.
T Consensus       202 h~~a~eiL~~l~~~l~~  218 (223)
T cd07615         202 HRQSTEILEDLQSKLQN  218 (223)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988754

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=96.46  E-value=0.37  Score=39.23  Aligned_cols=163  Identities=13%  Similarity=0.186  Sum_probs=112.3

Q ss_pred             hhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHH
Q 024505           88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE  167 (266)
Q Consensus        88 LaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE  167 (266)
                      |+.-|..++....... ..|+.+-..+|.+...+-.-.+.+....-..+.+||+-++.-.+  -+|.+-.+.+++.++.+
T Consensus        44 lg~~~~~Ls~~e~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~--s~k~~l~~R~~~~~~~~  120 (218)
T cd07596          44 FGKALIKLAKCEEEVG-GELGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQ--AVKETLDDRADALLTLQ  120 (218)
T ss_pred             HHHHHHHHHhhccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            3444445554433211 35889999999999998888999999999999999998884322  35555566556666665


Q ss_pred             HHHHHHHHHHh---hhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 024505          168 AQAIEVSKRQA---KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR-------LIAMV  237 (266)
Q Consensus       168 ~qa~eV~rRq~---k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQR-------LiaMV  237 (266)
                      .--..+.+.+.   |.+.+++  -+..|...++.++.++...+..+-+..-..-..+..+=.|..-.|       |..++
T Consensus       121 ~~~~~l~~k~~~~~kl~~~~~--~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~  198 (218)
T cd07596         121 SLKKDLASKKAQLEKLKAAPG--IKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFA  198 (218)
T ss_pred             HHHHHHHHHHHHHHHHhhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555554443   4443332  233577788888888888777777776666666666666666555       66788


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 024505          238 EAERTYHQRVLQILDQLE  255 (266)
Q Consensus       238 eaEr~YHqrv~~ILd~l~  255 (266)
                      +....||+.+++++..+.
T Consensus       199 ~~qi~~~~~~~~~W~~~~  216 (218)
T cd07596         199 RLQVQYAEKIAEAWESLL  216 (218)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999999999999988764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase

Probab=96.45  E-value=0.27  Score=44.18  Aligned_cols=186  Identities=11%  Similarity=0.216  Sum_probs=140.3

Q ss_pred             hhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCC---CCCCcch-HHHHHHHHhhHHHHHHHHHHhhHHHHHhhhh
Q 024505           61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSD---NTCTSGN-TLSKAALSYGRARAQMEKERGNLLKALGTQV  136 (266)
Q Consensus        61 KhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~e---n~~~~~~-~LarAa~~yg~a~~~mEkEre~l~r~L~~QV  136 (266)
                      .+|=++|++..-++|..|..=.---.+++..-+-|+-+   ++.+++. .++.+-..|+.+-..||++|+.|+.--...+
T Consensus        15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l   94 (207)
T cd07636          15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASEVL   94 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788888888877765555556677766666632   2223333 3778888999999999999999999999999


Q ss_pred             hhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHH
Q 024505          137 AEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAA  216 (266)
Q Consensus       137 ~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~a  216 (266)
                      ..||-.-+- -+|..++.-..+||+-.+.-++-..-..-=..|      +.+  ..++.|+.-|.--+++---..=+=+-
T Consensus        95 ~~~L~~F~k-edi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k------~K~--~~~eEA~~~L~~~r~~F~~~sLdYV~  165 (207)
T cd07636          95 ITPLEKFRK-EQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSK------KKE--SQLHEADSQVDLVRQHFYEVSLEYVF  165 (207)
T ss_pred             HHHHHHHHH-HHHHHHHHHhhhHhhhhhHHHHHHHHHhcCccc------CCc--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988765 466789999999999999888654332211011      112  26889999999888888777777778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024505          217 AMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (266)
Q Consensus       217 Am~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~  255 (266)
                      .+..|++-.-=-=|+.|++.+.|=.+|...--+++.++.
T Consensus       166 qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~  204 (207)
T cd07636         166 KVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFS  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            888888877777789999999999999988888887764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)

Probab=96.27  E-value=0.76  Score=40.79  Aligned_cols=154  Identities=17%  Similarity=0.238  Sum_probs=99.0

Q ss_pred             hhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcC-CCchhhhhHH-HHHHHH
Q 024505           85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG-APLDDARHLA-QRYDRM  162 (266)
Q Consensus        85 ~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~G-aPLEDARhLa-qrYdRm  162 (266)
                      +.-|+.-|.-||+.-   + ..|++|-..|+..-..|+.=|+.-...+-..|.+||+..+.= ...-|++..+ ..|+++
T Consensus        41 ~~~fak~~~~la~~E---~-~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~~~~ar~~~  116 (211)
T cd07598          41 GDELAKSINAYADTE---N-PSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGTICKHARDDLKNTFTARNKE  116 (211)
T ss_pred             HHHHHHHHHHHHhcc---C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788898763   2 359999999999999999888888888888999999875432 2233333211 123332


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 024505          163 RQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR-------LIA  235 (266)
Q Consensus       163 RQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQR-------Lia  235 (266)
                      .+        -...-.|.|..  ||.+-.++..||++|+.-+.-..-..       ..++.+=.|.--+|       |..
T Consensus       117 ~~--------~~~~leklk~~--~~~d~~~i~eaE~~l~~a~~d~~r~s-------~~l~ee~~rFe~~k~~d~K~~l~~  179 (211)
T cd07598         117 LK--------QLKQLEKLRQK--NPSDRQIISQAESELQKASVDANRST-------KELEEQMDNFEKQKIRDIKTIFSD  179 (211)
T ss_pred             HH--------HHHHHHHHHhc--CCchhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22        11223344433  44445577789999988776333333       33343333333333       347


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhh
Q 024505          236 MVEAERTYHQRVLQILDQLEGEVS  259 (266)
Q Consensus       236 MVeaEr~YHqrv~~ILd~l~~emv  259 (266)
                      .|+.|=.||..+++++..+...+.
T Consensus       180 fv~~~m~~~~kale~~~~~~~~~~  203 (211)
T cd07598         180 FVLIEMLFHAKALEVYTAAYQDIQ  203 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999988876543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2

Probab=96.22  E-value=0.47  Score=42.64  Aligned_cols=140  Identities=11%  Similarity=0.219  Sum_probs=106.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 024505          107 LSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGN  186 (266)
Q Consensus       107 LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn  186 (266)
                      ++..-..|+++...++.+|+-|+.-+...+..||-.-+- -+|-.++-...+||+-..+-++-..-.+.=.+|.|+.   
T Consensus        65 i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL~~F~k-edl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~---  140 (207)
T cd07635          65 IDASLQEFSNFLKNLEEQREIMALNVTETLIKPLERFRK-EQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEP---  140 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCcc---
Confidence            467778999999999999999999999999999988754 4678899999999999999987766544443333321   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024505          187 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (266)
Q Consensus       187 ~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~  255 (266)
                           -++.|+.-|.--++.---..=+=+.++..|++-..=-=|+.|++.+.|=.+|...--+++.++.
T Consensus       141 -----e~~EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~  204 (207)
T cd07635         141 -----QLQEADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFN  204 (207)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence                 2445666555555544444445566777777766666788999999999999988888888764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote

>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3

Probab=96.09  E-value=1  Score=40.56  Aligned_cols=196  Identities=17%  Similarity=0.247  Sum_probs=127.6

Q ss_pred             CCCccccchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHH
Q 024505           33 GSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAAL  112 (266)
Q Consensus        33 ~~d~~v~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~  112 (266)
                      ..|..+-|++  ++.+.||+      +++..|+|.-+=.+.+-....-+.-|+..|++ |  |+.++    +..+-.++.
T Consensus         8 T~D~~fe~~~--~rf~~lE~------~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~-~--~~~~~----~~~~~~~~e   72 (225)
T cd07590           8 TVDRELEREV--QKLQQLES------TTKKLYKDMKKYIEAVLALSKAEQRLSQDLAS-G--PLCED----NDELRNLVE   72 (225)
T ss_pred             CCChHHHHHH--HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c--ccCCC----ChHHHHHHH
Confidence            4466653332  34555553      45667776655555555555666677777776 3  65543    123667999


Q ss_pred             HhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhh-----hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCh
Q 024505          113 SYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-----HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNP  187 (266)
Q Consensus       113 ~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR-----hLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~  187 (266)
                      .|...-..|+.--..++..+.+.|.+||.....=-|.-..+     |...=|||.|..++..       +.|-+    ..
T Consensus        73 ~y~~~~~~l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl-------~~K~~----k~  141 (225)
T cd07590          73 ALDSVTTQLDKTVQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVEKL-------AEKEK----TG  141 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HhCcc----CC
Confidence            99999999996668889999999999999887766664443     5556688888877633       22321    22


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024505          188 DLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE  257 (266)
Q Consensus       188 e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aV---EaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~e  257 (266)
                      .+-.||..||..+..-+..-..+..+.-.=|-..   ...==.-+||-|+.|   +-.||.-.-.++.+|..-
T Consensus       142 ~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~---Ql~f~~e~~k~~~~l~~~  211 (225)
T cd07590         142 PNLAKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKS---QVLYYSQSTKIFTQLAPN  211 (225)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence            3369999999999988877766665443322211   111112356666555   679999999999888754

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins

Probab=96.00  E-value=1.1  Score=40.01  Aligned_cols=176  Identities=22%  Similarity=0.239  Sum_probs=115.5

Q ss_pred             hhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhh
Q 024505           59 AGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAE  138 (266)
Q Consensus        59 aaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~e  138 (266)
                      .+|.+|||+-.=.+.+-..-.-|+.|+.-|++=   |+.+.   +|      ...+......++.=-.++...|.++|.+
T Consensus        27 ~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~l---Y~p~~---~~------~~~~~~v~e~~d~~~~~l~~~l~~~Vl~   94 (211)
T cd07588          27 SANRLQKDLKNYLNSVRAMKQASKTLSETLKEL---YEPDW---PG------REHLASIFEQLDLLWNDLEEKLSDQVLG   94 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCcc---cc------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899998877777777777788888877543   33332   22      1233445666666667788889999999


Q ss_pred             HHHHhhcCCCchhhh-----hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHH
Q 024505          139 PLRAMVLGAPLDDAR-----HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKE  213 (266)
Q Consensus       139 PLRaMv~GaPLEDAR-----hLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKE  213 (266)
                      ||.....=-|--..|     |=..=|||.|..++..       +.|    +.  .+..||..||.+++..+..-..|..+
T Consensus        95 Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~~kL-------~~K----~~--kde~KL~kae~el~~Ak~~Ye~lN~~  161 (211)
T cd07588          95 PLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNLEAL-------KAK----KK--VDDQKLTKAEEELQQAKKVYEELNTE  161 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHH-------Hhc----cc--ccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999887655543332     2233499999988754       222    21  34789999999999888877776655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024505          214 AAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEVS  259 (266)
Q Consensus       214 A~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~emv  259 (266)
                      =-.=|-..=.=..-.=---+-+++-++-.||.-+..+..+|.+-|.
T Consensus       162 L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~  207 (211)
T cd07588         162 LHEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMD  207 (211)
T ss_pred             HHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4333322221111111122346677899999999999999988774

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th

>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins

Probab=95.43  E-value=1.5  Score=39.54  Aligned_cols=146  Identities=12%  Similarity=0.180  Sum_probs=107.1

Q ss_pred             cchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 024505          103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRE  182 (266)
Q Consensus       103 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re  182 (266)
                      ++....-+-..|+.+-..|+..|+.|..-+..-+..||-..+.+ +|-+++-+..+||+-..+-++-..-.++=..| | 
T Consensus        59 dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~pL~~F~k~-Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~-k-  135 (215)
T cd07601          59 DDEILVSTLKQFSKVVDELSTMHSTLSSQLADTVLHPISQFMES-DLAEIMTLKELFKAASNDHDGVLSKYSRLSKK-R-  135 (215)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcC-C-
Confidence            34445557778999999999999999999999999999998876 56889999999999999998854444332111 1 


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q 024505          183 TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD-QLEG  256 (266)
Q Consensus       183 ~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd-~l~~  256 (266)
                       + ++..   .+.|+.-|.--++.---.-=+=..++..|++-..===|+.|++.+.|=.+|.+.--++|. +++.
T Consensus       136 -~-~~~~---~~Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~p  205 (215)
T cd07601         136 -E-NTKV---KIEVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEE  205 (215)
T ss_pred             -C-chHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1 1111   235555555555555444455566777777777777789999999999999999999987 6654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2

Probab=95.42  E-value=2  Score=38.95  Aligned_cols=152  Identities=20%  Similarity=0.320  Sum_probs=98.7

Q ss_pred             hhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 024505           86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (266)
Q Consensus        86 ~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQE  165 (266)
                      .-|++.--+||.+=+  .++.+..|-..||.|...+=..|..+--.+.+-+.+||+.-..+-        -..|..-|.-
T Consensus        67 ~~Lg~~M~~~G~~lg--~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~d--------ik~i~k~RKk  136 (223)
T cd07614          67 GLLGETMIRYGKELG--DESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKD--------LKEIQHHLKK  136 (223)
T ss_pred             hHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence            346777788898854  455699999999999999999999999999999999999765332        1244555555


Q ss_pred             HHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQ  245 (266)
Q Consensus       166 aE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHq  245 (266)
                      +|..-.+.--.+.|  .+. .++  .-|+.|..|..+-+.       .|...|-.|-.=. -=-+.=|...|+|.-.||+
T Consensus       137 Le~rRLdyD~~K~r--~~k-~~e--eelr~a~ekFees~E-------~a~~~M~~il~~e-~e~~~~L~~lveAQl~Yh~  203 (223)
T cd07614         137 LEGRRLDFDYKKKR--QGK-IPD--EELRQAMEKFEESKE-------VAETSMHNLLETD-IEQVSQLSALVDAQLDYHR  203 (223)
T ss_pred             HHHHHHHHHHHHHc--CCC-Cch--HHHHHHHHHHHHHHH-------HHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHH
Confidence            55544433322222  222 222  234445545544332       2233333221100 0014458899999999999


Q ss_pred             HHHHHHHHhhhhhhh
Q 024505          246 RVLQILDQLEGEVSN  260 (266)
Q Consensus       246 rv~~ILd~l~~emvs  260 (266)
                      ..++||..|..++..
T Consensus       204 qa~eiL~~l~~~l~~  218 (223)
T cd07614         204 QAVQILDELAEKLKR  218 (223)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17

Probab=94.46  E-value=3.7  Score=37.20  Aligned_cols=166  Identities=15%  Similarity=0.153  Sum_probs=91.2

Q ss_pred             hhhhhhhhhhhhhhcCCCC----CCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhc------------
Q 024505           82 VEIGTKLSEDSRKYGSDNT----CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL------------  145 (266)
Q Consensus        82 ~Ei~~KLaeDc~kYG~en~----~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~------------  145 (266)
                      -|.+.+|..-|.||..--.    ..+..++-.|...+=+.-..+=.+++.+-.-|.++|++||...+.            
T Consensus        36 keYakkL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~  115 (253)
T cd07676          36 LSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHD  115 (253)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567899999999965421    011224555655554444455589999999999999999987776            


Q ss_pred             ----CCCchhh----hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHH-HH
Q 024505          146 ----GAPLDDA----RHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEA-AA  216 (266)
Q Consensus       146 ----GaPLEDA----RhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA-~a  216 (266)
                          ..|++..    .--...|++.++|+|.-..-..+  ++. +.+.++   .+++-+..++..-+..|. -.|+- ..
T Consensus       116 ~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~k--a~~-d~~~sk---~~~eK~k~~~~~~~~~~e-~aKn~Y~~  188 (253)
T cd07676         116 GRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEK--MDA-DINVTK---ADVEKARQQAQIRHQMAE-DSKAEYSS  188 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccc-cccCCH---HHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence                1222211    12456889999988875332222  110 111122   233445555555554444 34433 33


Q ss_pred             HHHHHHHHH---------------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q 024505          217 AMAAVESQQ---------------QRLTLQRLIAM-------VEAERTYHQRVLQILDQL  254 (266)
Q Consensus       217 Am~aVEaQQ---------------QrlTlQRLiaM-------VeaEr~YHqrv~~ILd~l  254 (266)
                      .+.-....|               |.+-=.|+.-|       .+.|+.++..|...||.+
T Consensus       189 ~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e~~~~~~i~~cl~~i  248 (253)
T cd07676         189 YLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKTYAEVDRQVIPIIGKCLDGI  248 (253)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            333333333               55555554433       345666555555555543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis

Probab=90.83  E-value=14  Score=34.40  Aligned_cols=88  Identities=23%  Similarity=0.321  Sum_probs=61.0

Q ss_pred             cchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhh-------hhHHHHHHHHHHHHHHHHHHHHH
Q 024505          103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDA-------RHLAQRYDRMRQEAEAQAIEVSK  175 (266)
Q Consensus       103 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDA-------RhLaqrYdRmRQEaE~qa~eV~r  175 (266)
                      .|..|.|    +..-+..+|.-+..|++.|-+...-||-.=+-    ++.       +.-+.-|.|+|+|.---..|..|
T Consensus        69 lG~~Ltr----i~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E----~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~k  140 (231)
T cd07643          69 IGSALTR----MCMRHKSIETKLKQFTSALMDCLVNPLQEKIE----EWKKVANQLDKDHAKEYKKARQEIKKKSSDTIR  140 (231)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3444555    44556669999999999999998887754321    122       33456799999999999999999


Q ss_pred             HHhhhcCCCCChhhhhhHHHHHHHH
Q 024505          176 RQAKVRETPGNPDLALKLDAAEVKL  200 (266)
Q Consensus       176 Rq~k~re~~gn~e~~~KLq~AE~Kl  200 (266)
                      =|.|+|...  ++.-..|..|.+-+
T Consensus       141 lqkk~rKg~--~~~~~~ldsa~~dv  163 (231)
T cd07643         141 LQKKARKGK--GDLQPQLDSAMQDV  163 (231)
T ss_pred             HHHHHhccC--CccchHHHHHHHHH
Confidence            999999754  44444444444333

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate

>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1

Probab=90.45  E-value=16  Score=34.41  Aligned_cols=152  Identities=16%  Similarity=0.194  Sum_probs=95.0

Q ss_pred             hhhhhhhhcCCCCCCcchHHHHHHHHhhHHH-HHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 024505           88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRAR-AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (266)
Q Consensus        88 LaeDc~kYG~en~~~~~~~LarAa~~yg~a~-~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEa  166 (266)
                      |++---+||.+=+  .++.|.+|- ..|-+. ++|=.+..++---+-..|.+||--... --|-+.-|...+-.++|.+.
T Consensus        62 Ls~~M~es~keLg--~dS~lg~aL-e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e-~dL~~I~k~rKkL~k~~LD~  137 (257)
T cd07620          62 LSISMAESFKDFD--AESSIRRVL-EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSE-EDLPEILKNKKQFAKLTTDW  137 (257)
T ss_pred             HHHHHHHHHhhCC--CcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hhHHHHHHHHHHHHhHHhhH
Confidence            4444467777754  234466666 677666 999999999999999999999988766 22334455555666666666


Q ss_pred             HHHHHHHHHHHh-h-hcC--CCCCh----------hhhhh-------HHHHHHHHHHHHHHHHHhcHHHHHHHH---HHH
Q 024505          167 EAQAIEVSKRQA-K-VRE--TPGNP----------DLALK-------LDAAEVKLHDLKSNMAILGKEAAAAMA---AVE  222 (266)
Q Consensus       167 E~qa~eV~rRq~-k-~re--~~gn~----------e~~~K-------Lq~AE~Kl~Elks~Ma~LGKEA~aAm~---aVE  222 (266)
                      ..-     |+|. . .+.  .+||.          .+..|       ++.|+.|+.+-|..       +++.|-   +=|
T Consensus       138 D~~-----K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~-------~~a~Mynfl~kE  205 (257)
T cd07620         138 NSA-----KSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQ-------YSADLYHFATKE  205 (257)
T ss_pred             HHH-----HHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh
Confidence            542     2222 1 111  12221          23466       44555555554432       333332   222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024505          223 SQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEVS  259 (266)
Q Consensus       223 aQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~emv  259 (266)
                      ..|-    .=|+..||+-..||++.++||+.+..+|-
T Consensus       206 ~e~a----~~l~~lveaQ~~YHrqsl~~Le~~l~~~~  238 (257)
T cd07620         206 DSYA----NYFIRLLELQAEYHKNSLEFLDKNITELK  238 (257)
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222    23788899999999999999999999874

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=90.22  E-value=17  Score=34.41  Aligned_cols=139  Identities=22%  Similarity=0.351  Sum_probs=94.2

Q ss_pred             cchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHH--HHHHHHHHhhh
Q 024505          103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQ--AIEVSKRQAKV  180 (266)
Q Consensus       103 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~q--a~eV~rRq~k~  180 (266)
                      +.+.|++|-..|+.+...|..-|-.+-..+-+..-.||+.-++. .+.       .=.++|+.++.-  -.|+.|-..|.
T Consensus       146 ~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~-~~~-------~a~k~RkkV~~sRL~~D~~R~~~k~  217 (289)
T PF10455_consen  146 DEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNT-DFK-------KANKARKKVENSRLQFDAARANLKN  217 (289)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34679999999999999999999999999999999999875532 233       334555555543  45666666665


Q ss_pred             cCCCCChh-hhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024505          181 RETPGNPD-LALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEV  258 (266)
Q Consensus       181 re~~gn~e-~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~em  258 (266)
                      +..|-+.+ .-..|+.||-   |+-+    -=.+|+.-|-.|=.-=-  .+.-|-.+|.|-..||+..+++|..+-.++
T Consensus       218 ~~~pekee~~r~~lE~aED---eFv~----aTeeAv~~Mk~vl~~~e--~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l  287 (289)
T PF10455_consen  218 KAKPEKEEQLRVELEQAED---EFVS----ATEEAVEVMKEVLDNSE--PLRLLKELVKAQLEYHKKAAEALSELLKSL  287 (289)
T ss_pred             cCCcccCHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHhcCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333322 2344555554   3333    33567777765543322  245577899999999999999999876543

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].

>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes

Probab=89.03  E-value=17  Score=32.86  Aligned_cols=139  Identities=18%  Similarity=0.261  Sum_probs=91.8

Q ss_pred             HHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhH-------HHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 024505          110 AALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHL-------AQRYDRMRQEAEAQAIEVSKRQAKVRE  182 (266)
Q Consensus       110 Aa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhL-------aqrYdRmRQEaE~qa~eV~rRq~k~re  182 (266)
                      +-......+..+|..++.+.++|-..+..||.-=+-    +|.+-+       ..-|.+.|++.+--..|..|=|.|++.
T Consensus        69 ~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e----~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~  144 (223)
T cd07605          69 ALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLE----LDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQK  144 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            333466677899999999999999999999764321    233333       346778888988888888887777775


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          183 TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQ  253 (266)
Q Consensus       183 ~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~  253 (266)
                      + |.+....||..+-.-+.+...-|..+=+.+--...--|--.=..=+.++-..++.|-+||...-..|.+
T Consensus       145 ~-~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~  214 (223)
T cd07605         145 S-GTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLST  214 (223)
T ss_pred             c-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 566667778777665555555555444333322222222222233567778899999999887776654

Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me

>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family

Probab=88.01  E-value=17  Score=31.63  Aligned_cols=192  Identities=18%  Similarity=0.293  Sum_probs=121.6

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhh
Q 024505           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN  127 (266)
Q Consensus        48 Q~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~  127 (266)
                      --||+|..   +|+.|++    ++.+.+.+|.--++-..|+++-|-.    .++ +. .|.-+-..+...+..+|.++++
T Consensus        10 P~~e~lv~---~~~kY~~----al~~~~~a~~~f~dal~ki~~~A~~----s~~-s~-~lG~~L~~~s~~~r~i~~~~~~   76 (219)
T PF08397_consen   10 PAWENLVS---LGKKYQK----ALRAMSQAAAAFFDALQKIGDMASN----SRG-SK-ELGDALMQISEVHRRIENELEE   76 (219)
T ss_dssp             HHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT----SSS-HH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccC----CCc-cc-cHHHHHHHHHHHHHHHHHHHHH
Confidence            34566553   4666664    4466777777777777888876653    111 22 3677777888899999999999


Q ss_pred             HHHHHhhhhhhHHHHhhcCCCc---hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHH
Q 024505          128 LLKALGTQVAEPLRAMVLGAPL---DDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLK  204 (266)
Q Consensus       128 l~r~L~~QV~ePLRaMv~GaPL---EDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elk  204 (266)
                      +.+.|-+.+.-||..=+-.-+=   ..=++...-|.+.+.+.+-...|..|=+.|.+.  |.++....+..+-..+.+..
T Consensus        77 ~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~k--gk~~~~~~~~~~~~~v~~~~  154 (219)
T PF08397_consen   77 VFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRK--GKDDQKYELKEALQDVTERQ  154 (219)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CCccccHHHHHHHHHHHHHH
Confidence            9999999999999865542211   111223455667777777777776665555553  33444444555544555555


Q ss_pred             HHHHHhcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024505          205 SNMAILGKEAAAAMAAVESQQQRLT--LQRLIAMVEAERTYHQRVLQILDQLEG  256 (266)
Q Consensus       205 s~Ma~LGKEA~aAm~aVEaQQQrlT--lQRLiaMVeaEr~YHqrv~~ILd~l~~  256 (266)
                      +-|...=+++-  =.|.-...-|..  +.++-..|..|-+||-...++|...=.
T Consensus       155 ~ele~~~~~~~--r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~  206 (219)
T PF08397_consen  155 SELEEFEKQSL--REALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLD  206 (219)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            55554433333  233344444554  688899999999999986666655433

In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.

>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1

Probab=87.60  E-value=22  Score=32.48  Aligned_cols=182  Identities=10%  Similarity=0.154  Sum_probs=99.8

Q ss_pred             hhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCC---CCcch-HHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhH
Q 024505           64 QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT---CTSGN-TLSKAALSYGRARAQMEKERGNLLKALGTQVAEP  139 (266)
Q Consensus        64 QrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~---~~~~~-~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~eP  139 (266)
                      =++||+-.-|.|.+|..=.--..+++.-.+-++-+-+   .|+++ .++.+-..||..-..||++|..|+.--...|..|
T Consensus        18 IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~~~   97 (207)
T cd07633          18 IKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNASDLLIKP   97 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666665555555666666665554421   12222 2788888999999999999999999999999999


Q ss_pred             HHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 024505          140 LRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMA  219 (266)
Q Consensus       140 LRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~  219 (266)
                      |..-+-- -+.-++.-...||+.+.+-++--.--+-  +    ||-+.  -.-++-|.+-|.--++..--.-=+=+--+.
T Consensus        98 L~~F~Ke-di~~~Ke~KK~FdK~se~~~~aL~k~a~--~----s~k~K--~~e~eEA~~~L~~~r~~F~~~aLdYV~qI~  168 (207)
T cd07633          98 LENFRKE-QIGFTKERKKKFEKDSEKFYSLLDRHVN--L----SSKKK--ESQLQEADLQVDKERQNFYESSLEYVYQIQ  168 (207)
T ss_pred             HHHHHHH-HHHHHHHHhhhhhhhhhHHHHHHHHHhc--c----cccCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9877641 1222455567788887777653221110  0    00011  112444444444444333322222222233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024505          220 AVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL  254 (266)
Q Consensus       220 aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l  254 (266)
                      .|.+..-==-+.-|++.+.+=-+|.+-=-+++.++
T Consensus       169 ~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df  203 (207)
T cd07633         169 EVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDF  203 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            33332222234455666666666555444554443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2

Probab=87.50  E-value=23  Score=32.51  Aligned_cols=180  Identities=16%  Similarity=0.288  Sum_probs=122.9

Q ss_pred             eeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhh
Q 024505           74 YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR  153 (266)
Q Consensus        74 ~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR  153 (266)
                      +..+|.-+++--.-+++--++-|.--.|.++..++++-+.||.....|-+=.++|+--+..-|.-||-..+-| -|-+-+
T Consensus        28 ~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~-dLr~vK  106 (215)
T cd07642          28 IHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKG-DLKGVK  106 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHhH
Confidence            4566777777777777777777774223345568999999999999999999999888888899999999875 244445


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHH-HHHHHHHHHHHHHhcHHHHH---HHHHHHHHHHHH
Q 024505          154 -HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAA-EVKLHDLKSNMAILGKEAAA---AMAAVESQQQRL  228 (266)
Q Consensus       154 -hLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~A-E~Kl~Elks~Ma~LGKEA~a---Am~aVEaQQQrl  228 (266)
                       .+.+-||+.|.+-|+-.....+-+.|.    +-+.-+.+.+.. |---++|..+=....-+|+-   =+..+..-|-+=
T Consensus       107 ~d~KK~fdK~~~dyE~~~~k~ek~~r~~----~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~e  182 (215)
T cd07642         107 GDLKKPFDKAWKDYETKVTKIEKEKKEH----AKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVD  182 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcc----CCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence             567789999999998765333222111    011112222221 11123444444445555555   455566666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024505          229 TLQRLIAMVEAERTYHQRVLQILDQLEGEV  258 (266)
Q Consensus       229 TlQRLiaMVeaEr~YHqrv~~ILd~l~~em  258 (266)
                      =||.|+....|--+|++.=+..|+.|+-=|
T Consensus       183 iL~~l~~~~~AQ~tfF~qG~k~le~l~p~~  212 (215)
T cd07642         183 LLQNLIKYFHAQCNFFQDGLKAVETLKPSI  212 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            789999999999999999999999997644

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=83.33  E-value=26  Score=29.51  Aligned_cols=149  Identities=15%  Similarity=0.220  Sum_probs=97.1

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 024505          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETP  184 (266)
Q Consensus       105 ~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~  184 (266)
                      ..|+++-..||.+...+-.=.+.+....-....+||+-.+.-.+  -++.+-.+=+++..+-+.-..++.+++.....-.
T Consensus        78 ~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~--svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~  155 (236)
T PF09325_consen   78 KSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIE--SVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLK  155 (236)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            45889999999888777666666666555667778876654322  3334333444555666777777777776654443


Q ss_pred             CCh-hhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Q 024505          185 GNP-DLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR-------LIAMVEAERTYHQRVLQILDQLE  255 (266)
Q Consensus       185 gn~-e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQR-------LiaMVeaEr~YHqrv~~ILd~l~  255 (266)
                      +++ ...-|+..++..+.+++..+..+-++--..-..+-.-=.|.--.|       |..+++..-.||+.++++...+.
T Consensus       156 ~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~  234 (236)
T PF09325_consen  156 ASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFL  234 (236)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence            332 235788888888888888887776665544444433333333333       56788999999999998887764

This is the C-terminal dimerisation domain [].

>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins

Probab=82.45  E-value=31  Score=29.69  Aligned_cols=139  Identities=17%  Similarity=0.129  Sum_probs=85.0

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCC---cchHHHHHHHHhhHHHHHHHH
Q 024505           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCT---SGNTLSKAALSYGRARAQMEK  123 (266)
Q Consensus        47 HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~---~~~~LarAa~~yg~a~~~mEk  123 (266)
                      |-.+.+...|.++--..|.+++...++++....               -+.+++..   ...++. ....|..+...|..
T Consensus        22 ~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~---------------~~~~~~~~~~~~~~~~~-~~~~y~~~~~~l~~   85 (216)
T cd07599          22 IEQSKAFRDSWRSILTHQIAFAKEFAELYDPIV---------------GPKESVGSHPAPESTLA-RLSRYVKALEELKK   85 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC---------------CCCcCcCCCCCcHHHHH-HHHHHHHHHHHHHH
Confidence            334444555556666777777777777654211               11111110   122233 34557888888877


Q ss_pred             HHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHH-------HHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHH
Q 024505          124 ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR-------YDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAA  196 (266)
Q Consensus       124 Ere~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqr-------YdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~A  196 (266)
                      +=...+..+.+.|..|+..+..=  +.+.+.+-.+       |||+|...+.      ..+.|   ++.++..-.||..|
T Consensus        86 ~~~~~l~~i~~~V~~P~~~~~~~--~~~i~k~IkKR~~k~lDyd~~~~k~~k------~~~~k---~~~~~kd~~kl~ka  154 (216)
T cd07599          86 ELLEELEFFEERVILPAKELKKY--IKKIRKTIKKRDHKKLDYDKLQNKLNK------LLQKK---KELSLKDEKQLAKL  154 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHH------HHhcC---CCCChhHHHHHHHH
Confidence            77777889999999999998863  3344443333       7777776655      12333   12356668899999


Q ss_pred             HHHHHHHHHHHHHhcH
Q 024505          197 EVKLHDLKSNMAILGK  212 (266)
Q Consensus       197 E~Kl~Elks~Ma~LGK  212 (266)
                      |.+|.+.+..-..|..
T Consensus       155 e~~l~~a~~~y~~lN~  170 (216)
T cd07599         155 ERKLEEAKEEYEALNE  170 (216)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999888777666544

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1i4d_A	224	Arfaptin 2, partner of RAC1; coiled coil, G-protei	1e-05
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 3e-08
 Identities = 44/287 (15%), Positives = 88/287 (30%), Gaps = 78/287 (27%)

Query: 13  EQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQ-RLERLYISTRAGKHFQRD--IVR 69
           E V    Q +  Q        SD+    +  +H  Q  L RL  S    K ++    ++ 
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS----KPYENCLLVLL 251

Query: 70  GV------EGY------IVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRA 117
            V        +      ++T ++  ++   LS  +  + S +  +   T  +        
Sbjct: 252 NVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEV------- 303

Query: 118 RAQMEKERGNLLKALGTQVAE---------PLRAMVLGAPLDDARHLAQRYDRMRQEAEA 168
                  +  LLK L  +  +         P R  ++   + D       +  +  +   
Sbjct: 304 -------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 169 QAIEVSKRQAKVRETPGNPDLALKLDAAEVK--LHDLKSNMAILGKEA---AAAMA---- 219
             IE S                  L+ AE +     L    ++    A      ++    
Sbjct: 357 TIIESSLNV---------------LEPAEYRKMFDRL----SVFPPSAHIPTILLSLIWF 397

Query: 220 AVESQQQRLTLQRLI--AMVE---AERTY--HQRVLQILDQLEGEVS 259
            V      + + +L   ++VE    E T       L++  +LE E +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 32/267 (11%), Positives = 74/267 (27%), Gaps = 79/267 (29%)

Query: 36  NVVTDE------AELHQHQRLERLYIS-----TRAGKHFQRDIVRGVEGYIVTGSKQVEI 84
           ++++ E                RL+ +         + F  +++R    ++++  K  + 
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 85  GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKAL------------ 132
              +         D         +K    Y  +R Q   +    L  L            
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAK----YNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 133 --GTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQA--IEVSKRQAKVRETPGNPD 188
             G      +   V                +++ + + +   + +            +P+
Sbjct: 160 GSGKTW---VALDVC------------LSYKVQCKMDFKIFWLNLKNCN--------SPE 196

Query: 189 LALKLDAAEVKL-HDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRV 247
             L++     KL + +  N       ++     + S Q  L  +RL+      + Y +  
Sbjct: 197 TVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLK----SKPY-ENC 246

Query: 248 LQILDQLEGEVSN----------CSTL 264
           L +L      V N          C  L
Sbjct: 247 LLVLL----NVQNAKAWNAFNLSCKIL 269

>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A* Length = 224

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 23/149 (15%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165
            L +        +  + K    LL A+   V+  +  +V    ++D     ++Y+  R E
Sbjct: 60  ELQEEFGYNAETQKLLCKNGETLLGAVNFFVSS-INTLVTKT-MEDTLMTVKQYEAARLE 117

Query: 166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQ 225
            +A   ++     ++   P +     +L++A+      +     L  + A  +  +E  +
Sbjct: 118 YDAYRTDLE----ELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENK 173

Query: 226 QRLTLQRLIAMVEAERTYHQRVLQILDQL 254
            ++  ++L+    A   Y     + L+Q 
Sbjct: 174 IKVMHKQLLLFHNAVSAYFAGNQKQLEQT 202

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A Length = 256

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 23/159 (14%), Positives = 54/159 (33%), Gaps = 21/159 (13%)

Query: 99  NTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR 158
                      A    G A  ++ + + +L   +     +PL+ +     L + +H  ++
Sbjct: 102 RELGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNL-HDKDLREIQHHLKK 160

Query: 159 YDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAM 218
            +  R +   +     K                     + +L           + A ++M
Sbjct: 161 LEGRRLDFGYKKKRQGKI-------------------PDEELRQALEKFDESKEIAESSM 201

Query: 219 AAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE 257
             +        + +L A+V+A+  YH++ +QIL Q+   
Sbjct: 202 FNLLEMDIEQ-VSQLSALVQAQLEYHKQAVQILQQVTVR 239

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	98.29
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	98.13
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	98.12
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	97.9
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	97.78
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	97.66
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	95.52
4avm_A	237	Bridging integrator 2; protein binding, plasma mem	95.12
2ykt_A	253	Brain-specific angiogenesis inhibitor 1-associate	92.04
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	84.93
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	83.54
2d1l_A	253	Metastasis suppressor protein 1; IRSP53, actin bin	82.07

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=98.29  E-value=0.00021  Score=59.76  Aligned_cols=219  Identities=14%  Similarity=0.208  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCccccchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhh
Q 024505           11 LREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSE   90 (266)
Q Consensus        11 lreqVAkQQQAV~Kqfg~~gy~~~d~~v~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLae   90 (266)
                      +..++.|-.|.|...+|++- ...|..+ |+.    -+++..+...+   +.+++++-    .|+..-..-......|++
T Consensus        28 ~~K~~~Ra~q~~~~k~G~~e-~T~D~~F-e~~----~~~f~~~e~~~---~~l~k~~k----~y~~~~~~~~~~~~~l~~   94 (251)
T 2fic_A           28 VQKKLTRAQEKVLQKLGKAD-ETKDEQF-EQC----VQNFNKQLTEG---TRLQKDLR----TYLASVKAMHEASKKLNE   94 (251)
T ss_dssp             -------------------------CHH-HHH----HHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHcCCcc-ccCCHHH-HHH----HHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            35667777889999998432 1223333 222    22222222221   22222221    111111112233445666


Q ss_pred             hhhh-hcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHH
Q 024505           91 DSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQ  169 (266)
Q Consensus        91 Dc~k-YG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~q  169 (266)
                      .... ||...+  +++.+......|+.+       -.++...+.++|.+||...+ + -+.+.+++-...++-|-+-+..
T Consensus        95 ~~~~l~~~~~~--~~~~~~~~~~~~~~~-------~~d~~~~l~~~vi~Pl~~~~-~-~~~~i~~~ikKR~~k~lDyD~~  163 (251)
T 2fic_A           95 CLQEVYEPDWP--GRDEANKIAENNDLL-------WMDYHQKLVDQALLTMDTYL-G-QFPDIKSRIAKRGRKLVDYDSA  163 (251)
T ss_dssp             HHHHHCCTTST--THHHHHHHHHHHHHH-------HHHHHHHHHHHTHHHHHHHH-H-THHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcC--CchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-H-HhHHHHHHHHHHHHHHhhHHHH
Confidence            6555 665532  233343333333322       23455567799999999999 3 4888888877777677776665


Q ss_pred             HHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          170 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQ  249 (266)
Q Consensus       170 a~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~  249 (266)
                      -..+.+-+.|..    .  ...||..||.++.+.+.....+-..--.=|-....-...+-..=|.++|++...||..+..
T Consensus       164 ~~~l~kl~~k~~----k--d~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~  237 (251)
T 2fic_A          164 RHHYESLQTAKK----K--DEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSK  237 (251)
T ss_dssp             HHHHHHHHC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCc----C--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555554443321    1  3578889999999988888777666656666555554444446788999999999999999


Q ss_pred             HHHHhhhhhh
Q 024505          250 ILDQLEGEVS  259 (266)
Q Consensus       250 ILd~l~~emv  259 (266)
                      ++.+|...|.
T Consensus       238 ~~~~L~~~l~  247 (251)
T 2fic_A          238 LNQNLNDVLV  247 (251)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998874

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1

Probab=98.13  E-value=0.00028  Score=57.95  Aligned_cols=221  Identities=17%  Similarity=0.258  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCccccchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhh
Q 024505            9 TKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKL   88 (266)
Q Consensus         9 sklreqVAkQQQAV~Kqfg~~gy~~~d~~v~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KL   88 (266)
                      +-+..++.|-.|.|...+|.+     +.. .|+.=-...+++..+...   .+.+++++-.    |+..-..-......|
T Consensus        11 ~~~~k~~~R~~q~~~~k~G~~-----e~t-~D~~fe~~~~~f~~~e~~---~~~l~k~~~~----y~~~~~~~~~~~~~l   77 (244)
T 1uru_A           11 KSVQKHAGRAKEKILQNLGKV-----DRT-ADEIFDDHLNNFNRQQAS---ANRLQKEFNN----YIRCVRAAQAASKTL   77 (244)
T ss_dssp             ---------------CCSSCT-----TCC-HHHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-----ccc-CCHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            345566777788888888732     222 254311122222222222   2223333222    211111112223445


Q ss_pred             hhhhhh-hcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHH
Q 024505           89 SEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE  167 (266)
Q Consensus        89 aeDc~k-YG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE  167 (266)
                      ++.... |+.+.+  ..+    +   ++.....++.-..+|...+.+.|.+||...+  .-+.+.+++-...++-|-+-+
T Consensus        78 ~~~~~~l~~~~~~--~~~----~---~~~~~~~~~~~~~~~~~~~~~~vi~Pl~~~~--~~~~~i~~~ikKR~~k~lDyD  146 (244)
T 1uru_A           78 MDSVCEIYEPQWS--GYD----A---LQAQTGASESLWADFAHKLGDQVLIPLNTYT--GQFPEMKKKVEKRNRKLIDYD  146 (244)
T ss_dssp             HHHHHHHSCTTST--THH----H---HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCC--Cch----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHH
Confidence            555555 655532  122    2   2222233666666788888899999999998  467888888777555555555


Q ss_pred             HHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          168 AQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRV  247 (266)
Q Consensus       168 ~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv  247 (266)
                      ..-..+.+-+.|.    .......||..||.++.+.+.....|-..--.=|-.........-..=|.++|++.-.||..+
T Consensus       147 ~~~~~l~kl~~k~----~k~kd~~kl~~ae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~  222 (244)
T 1uru_A          147 GQRHSFQNLQANA----NKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNET  222 (244)
T ss_dssp             HHHHHHHHHHTTT----CBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc----ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555544332    011335688899999999988888777777777777766666666677889999999999999


Q ss_pred             HHHHHHhhhh
Q 024505          248 LQILDQLEGE  257 (266)
Q Consensus       248 ~~ILd~l~~e  257 (266)
                      ..|+..|..-
T Consensus       223 ~~~~~~l~~~  232 (244)
T 1uru_A          223 AKIYSELEAI  232 (244)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776553

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A

Probab=98.12  E-value=0.00014  Score=62.18  Aligned_cols=150  Identities=20%  Similarity=0.277  Sum_probs=104.9

Q ss_pred             hhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 024505           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (266)
Q Consensus        87 KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEa  166 (266)
                      .|++-+-.+|.+=+  .++.+..|-..||.+...|...+..+...+.+.|.+||+..+. .-+-++++...+.+..|-+-
T Consensus        92 ~L~~~m~~~~~~l~--~~s~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~-~~~k~i~k~rkkl~~~rLdy  168 (256)
T 1zww_A           92 LLAEAMLKFGRELG--DDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHD-KDLREIQHHLKKLEGRRLDF  168 (256)
T ss_dssp             HHHHHHHHHHHHHC--SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH-THHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            45665555555432  2346889999999999999999999999999999999998765 34667788888888888777


Q ss_pred             HHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR  246 (266)
Q Consensus       167 E~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqr  246 (266)
                      ++-       +.|.+..   ++  .-|+.|+.+..+.       -.++...|-.+-+=. -=-+.-|.++|++...||..
T Consensus       169 D~~-------k~k~~k~---~e--eEle~A~~~fe~~-------~e~~~~~m~~l~~~e-~e~~~~L~~~v~aQl~y~~~  228 (256)
T 1zww_A          169 GYK-------KKRQGKI---PD--EELRQALEKFDES-------KEIAESSMFNLLEMD-IEQVSQLSALVQAQLEYHKQ  228 (256)
T ss_dssp             HHH-------HHTTTTS---CH--HHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-------HHHhccc---cH--HHHHHHHHHHHHH-------HHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            653       2232211   11  1244555555444       455566665543321 11247789999999999999


Q ss_pred             HHHHHHHhhhhhh
Q 024505          247 VLQILDQLEGEVS  259 (266)
Q Consensus       247 v~~ILd~l~~emv  259 (266)
                      ..++|.+|..++-
T Consensus       229 ~~e~L~~l~~~l~  241 (256)
T 1zww_A          229 AVQILQQVTVRLE  241 (256)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A

Probab=97.90  E-value=0.0025  Score=53.94  Aligned_cols=200  Identities=12%  Similarity=0.108  Sum_probs=152.5

Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCC--CCCcchHHHHHHHHhhHHHHHHHHHHh
Q 024505           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN--TCTSGNTLSKAALSYGRARAQMEKERG  126 (266)
Q Consensus        49 ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en--~~~~~~~LarAa~~yg~a~~~mEkEre  126 (266)
                      .|.-+=..+-.-+.+=+.+++.+..++..|..-....++|++.-..|+...  .+++++.+..+-..||.+...|+.-|.
T Consensus        22 ~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~~~~  101 (265)
T 2q12_A           22 LLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHA  101 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444445566777888888888888888888999999999998742  234455677888899999999999999


Q ss_pred             hHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHH
Q 024505          127 NLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN  206 (266)
Q Consensus       127 ~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~  206 (266)
                      .|+.-+..-|.+||+..+.+. |..++.+..+||+.+.+-++--.-.+. ..|.+  +  +|  ..|+.|+.+|.+.+.+
T Consensus       102 ~l~~~~~~~~~~PL~~f~~~d-lk~~ke~kk~fdk~~~~yd~al~k~~~-~~k~k--~--~e--~~l~Ea~~~l~~~Rk~  173 (265)
T 2q12_A          102 VLSTQLADAMMFPITQFKERD-LKEILTLKEVFQIASNDHDAAINRYSR-LSKKR--E--ND--KVKYEVTEDVYTSRKK  173 (265)
T ss_dssp             HHHHHHHHHTHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTSC--C--CH--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC--c--ch--hhHHHHHHHHHHHHHH
Confidence            999999999999999999875 567888889999999999865554332 12222  1  22  3477888889988888


Q ss_pred             HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q 024505          207 MAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD-QLEG  256 (266)
Q Consensus       207 Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd-~l~~  256 (266)
                      .--..-+-...|..+....----|.-|+..+++--+|++.-.+++. +++.
T Consensus       174 f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p  224 (265)
T 2q12_A          174 QHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEE  224 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899998888866666788899999999999999888873 5443

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}

Probab=97.78  E-value=0.00053  Score=58.29  Aligned_cols=150  Identities=20%  Similarity=0.306  Sum_probs=110.1

Q ss_pred             hhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHH
Q 024505           88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE  167 (266)
Q Consensus        88 LaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE  167 (266)
                      |+..+..+|.+-.  .++.++.|-..||.+..+|...+..+..-...-|.+||+..+. .-+-++-+...+.+..|-+-+
T Consensus        77 L~~~m~~~~~~l~--~ds~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~-~d~k~i~~~rKkle~~rLd~D  153 (240)
T 2z0v_A           77 LGDCMLKYGKELG--EDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQD-KDLKEIGHHLKKLEGRRLDYD  153 (240)
T ss_dssp             HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH-THHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            7888877777643  3557999999999999999999999999999999999998875 345667777778888887777


Q ss_pred             HHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          168 AQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRV  247 (266)
Q Consensus       168 ~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv  247 (266)
                      +-     |.  |.+..   +  -.-|+.|+.++.+.+.       .+...|-.|-+=. -=-+.-|.++|+|...||...
T Consensus       154 ~a-----k~--k~~k~---~--eeEl~~A~~~fe~~~e-------~~~~~m~~~~~~~-~e~l~~l~~~v~aQl~y~~~~  213 (240)
T 2z0v_A          154 YK-----KK--RVGKI---P--DEEVRQAVEKFEESKE-------LAERSMFNFLEND-VEQVSQLAVFIEAALDYHRQS  213 (240)
T ss_dssp             HH-----HT--TTTSS---C--HHHHHHHHHHHHHHHH-------HHHHHHHHHHHST-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-----HH--Hhccc---c--HHHHHHHHHHHHHHHH-------HHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH
Confidence            53     22  32211   1  2236666666666554       4455565553221 122457899999999999999


Q ss_pred             HHHHHHhhhhhhh
Q 024505          248 LQILDQLEGEVSN  260 (266)
Q Consensus       248 ~~ILd~l~~emvs  260 (266)
                      .++|.+|..++-.
T Consensus       214 ~e~L~~l~~~l~~  226 (240)
T 2z0v_A          214 TEILQELQSKLQM  226 (240)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887643

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=97.66  E-value=0.01  Score=52.70  Aligned_cols=186  Identities=10%  Similarity=0.093  Sum_probs=133.4

Q ss_pred             hhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCC--CCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhh
Q 024505           58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT--CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQ  135 (266)
Q Consensus        58 RaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~--~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~Q  135 (266)
                      -.-+.+=+.+++.+..++..|.....-..+|++.-..|+.+++  +.+++.+..+-..||.+.+.|+.-+..|+.-+...
T Consensus        31 ~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~~~~~l~~~~~~~  110 (385)
T 2q13_A           31 TAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADA  110 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455666667777777666666667788888888887543  23445567788889999999999999999999999


Q ss_pred             hhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHH
Q 024505          136 VAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAA  215 (266)
Q Consensus       136 V~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~  215 (266)
                      |.+||+..+.+. |..++.+..+||+.+.+-++--.-.+. ..|.+    .+  ...++.|+..|.+.+..-.-..-+=.
T Consensus       111 ~~~PL~~f~~~d-i~~~ke~kk~fek~~~~yd~al~k~~~-~~k~k----~~--e~~~~ea~~~l~~~rk~f~~~~ldy~  182 (385)
T 2q13_A          111 MMFPITQFKERD-LKEILTLKEVFQIASNDHDAAINRYSR-LSKKR----EN--DKVKYEVTEDVYTSRKKQHQTMMHYF  182 (385)
T ss_dssp             THHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCSSS----CC--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC----ch--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999874 567788888999999998865443222 11211    12  22456677778777777766666667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          216 AAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL  251 (266)
Q Consensus       216 aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~IL  251 (266)
                      ..|..++...-.--|+-|+..+++--+|++.-.+++
T Consensus       183 ~~l~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~  218 (385)
T 2q13_A          183 CALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENL  218 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888776666678888899998877776666654

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=95.52  E-value=1.3  Score=39.57  Aligned_cols=176  Identities=10%  Similarity=0.150  Sum_probs=106.7

Q ss_pred             hhhhccceeeeccchhhhhhhhhhhhhhhcCCCCC--CcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhh
Q 024505           67 IVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTC--TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMV  144 (266)
Q Consensus        67 IVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~--~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv  144 (266)
                      +++.+..++..|..-....+.|++....|..++.+  ..+..+.-+-..|+.....++..+..|+.-+...|.+||...+
T Consensus        63 l~k~~~~~~~~~~~~~~a~~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~~~~~L~~~~~~~i~~pL~~f~  142 (407)
T 4h8s_A           63 LLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNLLHTELAKQLADTMVLPIIQFR  142 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333344555555556555432  2233455566789999999999999999999999999999999


Q ss_pred             cCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 024505          145 LGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQ  224 (266)
Q Consensus       145 ~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQ  224 (266)
                      .+ -|.+++.+..+||+...+-++--..... ..|.++      +..+..-+...|.+.+...--..-+-...|..+...
T Consensus       143 k~-di~~~ke~kK~Fek~~~~Yd~~l~Ky~~-~~k~k~------~~~~~~e~~~~l~~~Rk~f~~asldyv~~l~~lq~r  214 (407)
T 4h8s_A          143 EK-DLTEVSTLKDLFGLASNEHDLSMAKYSR-LPKKKE------NEKVKTEVGKEVAAARRKQHLSSLQYYCALNALQYR  214 (407)
T ss_dssp             HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCSTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88 3666777788888888877765544332 112221      122233344445554444443344555667767665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          225 QQRLTLQRLIAMVEAERTYHQRVLQI  250 (266)
Q Consensus       225 QQrlTlQRLiaMVeaEr~YHqrv~~I  250 (266)
                      .----++-|+..+++--+|++.-.+.
T Consensus       215 k~~e~le~l~~~~~a~~~~f~~~~~~  240 (407)
T 4h8s_A          215 KQMAMMEPMIGFAHGQINFFKKGAEM  240 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555666777777776666555444

>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}

Probab=95.12  E-value=1.4  Score=37.61  Aligned_cols=213  Identities=14%  Similarity=0.169  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCccccchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhh
Q 024505           11 LREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSE   90 (266)
Q Consensus        11 lreqVAkQQQAV~Kqfg~~gy~~~d~~v~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLae   90 (266)
                      +...+.|-.|-|.-.+|.+ -...|..+-|+  -++.+.||+      .++.+|+++-.=.+.+-..-.-|..++.-|.+
T Consensus         9 ~~K~~~R~~q~lkqk~G~~-e~T~D~~Fe~~--e~rF~~le~------~~~kL~k~~k~y~~ai~~~~~~q~~~~~~l~~   79 (237)
T 4avm_A            9 VQKKFSRAQEKVLQKLGKA-VETKDERFEQS--ASNFYQQQA------EGHKLYKDLKNFLSAVKVMHESSKRVSETLQE   79 (237)
T ss_dssp             HHHHHHHHHHHHHHHTTSS-CCCCCHHHHHH--HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHcCCC-cccccHHHHHH--HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445777788888888843 22445444222  223344443      35667777654444433333333333333322


Q ss_pred             hhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHH-------HHHHHH
Q 024505           91 DSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQ-------RYDRMR  163 (266)
Q Consensus        91 Dc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaq-------rYdRmR  163 (266)
                         =|+.+.+   +.      ..|......++.=-.+++..|.++|..||..+..=  +.+-+.+..       =|||.|
T Consensus        80 ---~y~~~~~---~~------~~~~~~~~~~~~l~~~~~~~l~~~vi~Pl~~~~~~--~~~i~k~I~KR~~kllDyd~~~  145 (237)
T 4avm_A           80 ---IYSSEWD---GH------EELKAIVWNNDLLWEDYEEKLADQAVRTMEIYVAQ--FSEIKERIAKRGRKLVDYDSAR  145 (237)
T ss_dssp             ---HSCTTST---TH------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HhCCccC---cH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHH
Confidence               2443321   21      12333333333335566777888899999988743  333333333       366666


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          164 QEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTY  243 (266)
Q Consensus       164 QEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~Y  243 (266)
                      ..++.-       +.|    +. - ...||..||.++.+.+.....|...--.=+-..-.=...+--.-|-++|..++.|
T Consensus       146 ~~~~kl-------~~k----~~-k-d~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l~~~~~~~~~~~~~~~i~~q~~f  212 (237)
T 4avm_A          146 HHLEAV-------QNA----KK-K-DEAKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQNISNLRDVF  212 (237)
T ss_dssp             HHHHHH-------HTC----SS-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-------Hhc----cC-C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655532       222    21 1 2579999999999888877777665444443333322333334466788889999


Q ss_pred             HHHHHHHHHHhhhhhh
Q 024505          244 HQRVLQILDQLEGEVS  259 (266)
Q Consensus       244 Hqrv~~ILd~l~~emv  259 (266)
                      |..+..+...|.+=|.
T Consensus       213 ~~~~~~~~~~l~~~~~  228 (237)
T 4avm_A          213 YREMSKLNHNLYEVMS  228 (237)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHH
Confidence            9888877777666554

>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A

Probab=92.04  E-value=5.9  Score=34.76  Aligned_cols=171  Identities=13%  Similarity=0.158  Sum_probs=104.5

Q ss_pred             ceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhh
Q 024505           73 GYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDA  152 (266)
Q Consensus        73 G~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDA  152 (266)
                      +.+..+.-=++-..|+++-+-.    ++ .+. -|.-+-......+..+|..++++.+.|-..+.-||.-=|-    +|-
T Consensus        47 ~~~~a~~~f~dal~kia~~A~~----s~-gs~-elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pL~~kie----~d~  116 (253)
T 2ykt_A           47 GVTYAAKGYFDALVKMGELASE----SQ-GSK-ELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVE----LDS  116 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT----SS-SCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH----HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc----Cc-chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhH
Confidence            3444444445666666664432    11 122 3555555678889999999999999999999999886432    232


Q ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChh-hhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 024505          153 -------RHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPD-LALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQ  224 (266)
Q Consensus       153 -------RhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e-~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQ  224 (266)
                             ++.+.-|.+-+++.+-...|+.|-+.|.+.+. |+. .-.|+..+-.-+.+.++.|-..=+++--.-.--|-=
T Consensus       117 K~v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~KK~k~gk-~~~~~~~~~~~~~e~v~~~~~~le~~~~~~lr~aL~EERr  195 (253)
T 2ykt_A          117 RYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSK-NPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERR  195 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhccCCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   34456778888999888889888877766322 221 113444444445555555554444444333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024505          225 QQRLTLQRLIAMVEAERTYHQRVLQILDQL  254 (266)
Q Consensus       225 QQrlTlQRLiaMVeaEr~YHqrv~~ILd~l  254 (266)
                      .=..=+.++...+..|-.||.....+|..-
T Consensus       196 Rycflv~~~~~v~~~~~~~h~~~~~~L~~~  225 (253)
T 2ykt_A          196 RFCFLVEKQCAVAKNSAAYHSKGKELLAQK  225 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333345778889999999998877776553

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=84.93  E-value=19  Score=31.33  Aligned_cols=92  Identities=13%  Similarity=0.169  Sum_probs=62.7

Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcC---CCCCCcchHHHHHHHHhhHHHHHHHHHH
Q 024505           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS---DNTCTSGNTLSKAALSYGRARAQMEKER  125 (266)
Q Consensus        49 ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~---en~~~~~~~LarAa~~yg~a~~~mEkEr  125 (266)
                      .++.|+.-+..|..|=+||..=+-==   ..=--|.+.+|..=|++|..   .++ ..| +|..|-..+-..-..+-+.+
T Consensus        30 g~~~L~~r~~~g~~~~~el~~f~keR---a~IE~eYak~L~kLakk~~~~~~~~~-e~g-tl~~aw~~l~~e~e~~a~~H  104 (350)
T 3aco_A           30 NYKRTVKRIDDGHRLCSDLMNCLHER---ARIEKAYAQQLTEWARRWRQLVEKGP-QYG-TVEKAWMAFMSEAERVSELH  104 (350)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTSS-CCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccCCC-CCc-hHHHHHHHHHHHHHHHHHHH
Confidence            56777777777776666664322100   00113668888888999863   222 234 78888777777777777888


Q ss_pred             hhHHHHHhhhhhhHHHHhhc
Q 024505          126 GNLLKALGTQVAEPLRAMVL  145 (266)
Q Consensus       126 e~l~r~L~~QV~ePLRaMv~  145 (266)
                      ..|-..|.++|.+||+..+.
T Consensus       105 ~~la~~L~~~v~~~l~~~~~  124 (350)
T 3aco_A          105 LEVKASLMNDDFEKIKNWQK  124 (350)
T ss_dssp             HHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999998753

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=83.54  E-value=28  Score=32.16  Aligned_cols=200  Identities=15%  Similarity=0.153  Sum_probs=105.5

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcC---CCCCCcchHHHHHHHHhhHHHHHHHHHHh
Q 024505           50 LERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS---DNTCTSGNTLSKAALSYGRARAQMEKERG  126 (266)
Q Consensus        50 LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~---en~~~~~~~LarAa~~yg~a~~~mEkEre  126 (266)
                      ++.||.-+..|..+=+||+.=+.==   ..=-.|.+.+|..=|+||-.   .++ ..| +|..+-..+=..-..+-+-+.
T Consensus        24 ~~~L~~r~~~g~~~~~el~~f~keR---a~iE~eYAk~L~kLakk~~~~~~~~~-e~g-tl~~aw~~~~~e~e~~a~~H~   98 (486)
T 3haj_A           24 YKRTVKRIDDGHRLCSDLMNCLHER---ARIEKAYAQQLTEWARRWRQLVEKGP-QYG-TVEKAWMAFMSEAERVSELHL   98 (486)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSSS-CCS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhccCCC-Ccc-HHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555544321100   01123567777777777721   112 234 688877777777777777788


Q ss_pred             hHHHHHhhhhhhHHHHhhcCC------------------------Cc----hhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024505          127 NLLKALGTQVAEPLRAMVLGA------------------------PL----DDARHLAQRYDRMRQEAEAQAIEVSKRQA  178 (266)
Q Consensus       127 ~l~r~L~~QV~ePLRaMv~Ga------------------------PL----EDARhLaqrYdRmRQEaE~qa~eV~rRq~  178 (266)
                      .+-..|.++|.+||+....-.                        +|    .+......+|+..++|++..-....+  +
T Consensus        99 ~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~--a  176 (486)
T 3haj_A           99 EVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREAN--S  176 (486)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence            888899999999999875311                        00    01122344677777775544322211  1


Q ss_pred             hhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          179 KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAA--------------AMAAVESQQQRLTLQRLIAMVEAERTYH  244 (266)
Q Consensus       179 k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~a--------------Am~aVEaQQQrlTlQRLiaMVeaEr~YH  244 (266)
                      + .+...++....|++.   |++..+..+...-.+=..              .|..+=.+-|.+--+||..|-+.=..|+
T Consensus       177 ~-~d~~~t~k~~eK~~~---k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y~  252 (486)
T 3haj_A          177 K-ADPSLNPEQLKKLQD---KIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQ  252 (486)
T ss_dssp             H-HCCCSCSHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h-ccccCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 123334554555443   333333333322222222              3444444556666667777766666777


Q ss_pred             HHHH----HHHHHhhhhhhh
Q 024505          245 QRVL----QILDQLEGEVSN  260 (266)
Q Consensus       245 qrv~----~ILd~l~~emvs  260 (266)
                      ..+-    .++++++.+|..
T Consensus       253 ~~l~~~~~~~~~~~~e~l~~  272 (486)
T 3haj_A          253 KHLDLSNVAGYKAIYHDLEQ  272 (486)
T ss_dssp             HHHCCSSCHHHHHHHHHHHH
T ss_pred             HHHhhhcchhHHHHHHHHHH
Confidence            6653    245666666543

>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}

Probab=82.07  E-value=27  Score=30.98  Aligned_cols=103  Identities=15%  Similarity=0.180  Sum_probs=74.3

Q ss_pred             cceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchh
Q 024505           72 EGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDD  151 (266)
Q Consensus        72 EG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLED  151 (266)
                      .|.+.+|.-=++-..|+++-.-    ..++++. -|--+-..+...++.+|..++++.+.|-+.+.-||.-=+-    .|
T Consensus        48 ~~~~~a~~af~Da~qKvad~A~----~s~g~s~-elG~~L~~i~~~hr~ie~~l~~~~k~~~~eli~pLe~k~e----~d  118 (253)
T 2d1l_A           48 RTTVVAAAAFLDAFQKVADMAT----NTRGGTR-EIGSALTRMCMRHRSIEAKLRQFSSALIDCLINPLQEQME----EW  118 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----TSSTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH----HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc----cCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hh
Confidence            4444455545666666665432    1111122 3666667788899999999999999999999999976553    34


Q ss_pred             hhhHH-------HHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 024505          152 ARHLA-------QRYDRMRQEAEAQAIEVSKRQAKVRET  183 (266)
Q Consensus       152 ARhLa-------qrYdRmRQEaE~qa~eV~rRq~k~re~  183 (266)
                      .+-++       ..|.|.|.|.+....+..|-+.|.|-.
T Consensus       119 ~k~~~~~~K~~~~~~k~~r~elkk~~~~~~k~qkK~rk~  157 (253)
T 2d1l_A          119 KKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKV  157 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence            55444       679999999999999999988888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d1i4da_	200	a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Hum	3e-13
d1urua_	217	a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila	1e-09
d2d4ca1	237	a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sap	1e-04

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 200

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 3e-13
 Identities = 27/204 (13%), Positives = 67/204 (32%), Gaps = 11/204 (5%)

Query: 50  LERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSK 109
           LE      R  K     +++            ++    L +        +       L +
Sbjct: 8   LELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSP-----ELQE 62

Query: 110 AALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQ 169
                   +  + K    LL A+   V+      ++   ++D     ++Y+  R E +A 
Sbjct: 63  EFGYNAETQKLLCKNGETLLGAVNFFVSSINT--LVTKTMEDTLMTVKQYEAARLEYDAY 120

Query: 170 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 229
             ++ +     R+         +L++A+      +     L  + A  +  +E  + ++ 
Sbjct: 121 RTDLEELSLGPRDAGTRG----RLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVM 176

Query: 230 LQRLIAMVEAERTYHQRVLQILDQ 253
            ++L+    A   Y     + L+Q
Sbjct: 177 HKQLLLFHNAVSAYFAGNQKQLEQ 200

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 18/217 (8%)

Query: 47  HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNT 106
              L        +    Q++       YI            L +   +            
Sbjct: 15  DDHLNNFNRQQASANRLQKE----FNNYIRCVRAAQAASKTLMDSVCEIYEP-------- 62

Query: 107 LSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166
                 +        E    +    LG QV  PL          + +   ++ +R   + 
Sbjct: 63  QWSGYDALQAQTGASESLWADFAHKLGDQVLIPLNT--YTGQFPEMKKKVEKRNRKLIDY 120

Query: 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQ 226
           + Q          ++         +KL     +L + +    IL  E    + A+   + 
Sbjct: 121 DGQ----RHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRI 176

Query: 227 RLTLQRLIAMVEAERTYHQRVLQILDQLEGEVSNCST 263
              +  L  +   E+ +H    +I  +LE  V   +T
Sbjct: 177 LFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLAT 213

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 22/150 (14%), Positives = 57/150 (38%), Gaps = 17/150 (11%)

Query: 109 KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEA 168
            A    G A  ++ + + +L   +     +PL+ +       D R +        ++ E 
Sbjct: 102 PALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDK----DLREIQSALQHHLKKLEG 157

Query: 169 QAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRL 228
           + ++   ++ +  +              + +L           + A ++M  +       
Sbjct: 158 RRLDFDYKKKRQGK------------IPDEELRQALEKFDESKEIAESSMFNLLEMDIEQ 205

Query: 229 TLQRLIAMVEAERTYHQRVLQILDQLEGEV 258
            + +L A+V+A+  YH++ +QIL Q+   +
Sbjct: 206 -VSQLSALVQAQLEYHKQAVQILQQVTVRL 234

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	99.34
d2d4ca1	237	Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	99.04
d1y2oa1	248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	98.39
d2elba1	268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	98.12
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	81.13

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.8e-11  Score=91.40  Aligned_cols=178  Identities=13%  Similarity=0.157  Sum_probs=144.5

Q ss_pred             hhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhh
Q 024505           65 RDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMV  144 (266)
Q Consensus        65 rdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv  144 (266)
                      +.|++-++.++..+..-......|+..++.+|..+|     .+..+-..||.+...|++.++.++..+...|.+|+....
T Consensus        23 ~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   97 (200)
T d1i4da_          23 ESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSP-----ELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVT   97 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            567777777777777777777888888888887664     245666789999999999999999999888887776433


Q ss_pred             cCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 024505          145 LGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQ  224 (266)
Q Consensus       145 ~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQ  224 (266)
                        .++.+.++...+|++.|.+-+..-..+.+.+.+.+    ..-...||..||.++.+.+.....+..+...-|-.++..
T Consensus        98 --~~~~~~~~~~kk~~~~~~dyd~~~~k~~~~~~~~~----~~~~~~kl~~ae~~~~~a~~~fe~~~~~~~~~l~~l~~~  171 (200)
T d1i4da_          98 --KTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPR----DAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEEN  171 (200)
T ss_dssp             --THHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccc----ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              56889999999999999999999988877655532    222345999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          225 QQRLTLQRLIAMVEAERTYHQRVLQILDQ  253 (266)
Q Consensus       225 QQrlTlQRLiaMVeaEr~YHqrv~~ILd~  253 (266)
                      +...-.+.|++++++..+||+.++..|++
T Consensus       172 r~~~~~~~l~~~~~~~~~f~~~~~~~le~  200 (200)
T d1i4da_         172 KIKVMHKQLLLFHNAVSAYFAGNQKQLEQ  200 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999998864

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.1e-09  Score=83.69  Aligned_cols=215  Identities=18%  Similarity=0.260  Sum_probs=149.0

Q ss_pred             HHHHHHHHHhcCCCCCCCCccccchHHHhHHHHHHHHHhhhhhh-hhhhhhhhhhccceeeeccc---------------
Q 024505           17 RQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG-KHFQRDIVRGVEGYIVTGSK---------------   80 (266)
Q Consensus        17 kQQQAV~Kqfg~~gy~~~d~~v~DE~Elq~HQ~LekLY~STRaa-KhFQrdIVRgvEG~is~gsK---------------   80 (266)
                      |-+|.|.-.||.+     |..=+|+.    ..+||+-+..++.+ +.+++++.--.++-+....+               
T Consensus         2 R~~q~~~ek~G~~-----e~T~ld~~----f~~lEk~~~~~~~~~~kl~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~   72 (237)
T d2d4ca1           2 KATQKVSEKVGGA-----EGTKLDDD----FKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEK   72 (237)
T ss_dssp             HHHHHHHHHHTSH-----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGCSCC--------------
T ss_pred             chhHHHHhHcCCC-----CcCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHhhhccccc
Confidence            3467888999832     33324553    56678878777766 78888876544433221111               


Q ss_pred             ---hhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHH
Q 024505           81 ---QVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQ  157 (266)
Q Consensus        81 ---q~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaq  157 (266)
                         -..-...|+..+..+|.+-+  .++.+..+-..||.+...|...|.++...+...|.+||+..+..    |-+....
T Consensus        73 ~~~~~~~~~~l~~~~~~~~~~~~--~d~~~~~~L~~~~~~~~~i~~~~~~~~~~i~~~v~~pl~~~l~~----d~~~~~~  146 (237)
T d2d4ca1          73 GPGYPQAEALLAEAMLKFGRELG--DDCNFGPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDK----DLREIQS  146 (237)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHC--SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT----HHHHHHH
T ss_pred             ccchhhhhHHHHHHHHHhcccCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence               11122457777888777643  34568889999999999999999999999999999999999884    5555566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          158 RYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMV  237 (266)
Q Consensus       158 rYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMV  237 (266)
                      .+++.|...+..-.+..+.+.|....   ++  -.|+.|+.++.+       +-.++...|-.+..=..- -+..|..+|
T Consensus       147 ~~~~~rk~~d~~~~~~~~~~~k~~~~---~~--e~l~~a~~~~e~-------~~~~~~~~l~~l~~~~~~-~~~~l~~~~  213 (237)
T d2d4ca1         147 ALQHHLKKLEGRRLDFDYKKKRQGKI---PD--EELRQALEKFDE-------SKEIAESSMFNLLEMDIE-QVSQLSALV  213 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSC---CH--HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhh---hH--HHHHHHHHHHHH-------HHHHHHHHHHHHHHccHH-HHHHHHHHH
Confidence            66777777776666666666554432   11  245555555544       455667777777553322 368899999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhh
Q 024505          238 EAERTYHQRVLQILDQLEGEVS  259 (266)
Q Consensus       238 eaEr~YHqrv~~ILd~l~~emv  259 (266)
                      +++..||+...++|..|..+|-
T Consensus       214 ~aq~~y~~~~~~~l~~l~~~l~  235 (237)
T d2d4ca1         214 QAQLEYHKQAVQILQQVTVRLE  235 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998874

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=2.8e-08  Score=76.66  Aligned_cols=204  Identities=16%  Similarity=0.191  Sum_probs=164.2

Q ss_pred             CccccchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHh
Q 024505           35 DNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSY  114 (266)
Q Consensus        35 d~~v~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~y  114 (266)
                      +-. +||.=-...+.|..+=..+   +    .+.+.+++|+..+..-......|++.++.++.+.++. .       ..+
T Consensus         7 ~~T-~D~~fe~~~~~~~~~e~~l---~----~l~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~-------~~~   70 (217)
T d1urua_           7 DRT-ADEIFDDHLNNFNRQQASA---N----RLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSG-Y-------DAL   70 (217)
T ss_dssp             TCC-HHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTT-H-------HHH
T ss_pred             CCc-ccHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch-H-------HHH
Confidence            444 3877655566655553332   3    3455567778778888889999999999998776532 2       234


Q ss_pred             hHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHH
Q 024505          115 GRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLD  194 (266)
Q Consensus       115 g~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq  194 (266)
                      ......++.-..++...+..+|.+||...+.  -+.+.+.+..+.+..+.+-+..-..+.+.+.|.+    ++.+-.|+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~v~~pL~~~~~--~~~~~~~~~kkr~~~~~dyd~~~~~l~k~~~k~~----~~~~~~~l~  144 (217)
T d1urua_          71 QAQTGASESLWADFAHKLGDQVLIPLNTYTG--QFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANAN----KRKDDVKLT  144 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----BTTBCCTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cccchhhhH
Confidence            4556677777888999999999999999885  5888999999999999999998888888766643    233456899


Q ss_pred             HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024505          195 AAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEVSN  260 (266)
Q Consensus       195 ~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~emvs  260 (266)
                      .++.++...+.....++.+-..-|-.++......-.+-|.+++++...||..+..++.+|+..|..
T Consensus       145 ~~e~~~~~a~~~fe~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~l~~~~~~  210 (217)
T d1urua_         145 KGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDK  210 (217)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998889999999999999999999999999988754

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.2e-05  Score=65.08  Aligned_cols=174  Identities=11%  Similarity=0.084  Sum_probs=111.4

Q ss_pred             hhhhhhhhhhhhhcCCCCC-CcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHH----
Q 024505           83 EIGTKLSEDSRKYGSDNTC-TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQ----  157 (266)
Q Consensus        83 Ei~~KLaeDc~kYG~en~~-~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaq----  157 (266)
                      ..+..|++-..++|...+. .....|.-+-..||.....|+..++.|...+..+|..||..-+.+-|=+ ..+...    
T Consensus        47 ~a~~~f~dal~~~~~~~~~~~~~~~ig~~L~~~~~~~~~i~~~~~~l~~~~~~~~i~PL~~~~~~d~k~-i~~~kK~~~k  125 (248)
T d1y2oa1          47 YAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRY-LSAALKKYQT  125 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            3344555555666542111 1223488888999999999999999999999999999999988754422 333333    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH--HHHHHH
Q 024505          158 RYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT--LQRLIA  235 (266)
Q Consensus       158 rYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlT--lQRLia  235 (266)
                      .|++.+...+.-..+..+-+.|.+..+.......|+..++.-+.+.++.+-.+=.+.. -.+-++. ..|..  +..|.+
T Consensus       126 ~~k~~~~~l~K~~~~~~k~~kk~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~-~~~~~ee-rkr~~~lv~~l~~  203 (248)
T d1y2oa1         126 EQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGY-KTALTEE-RRRFCFLVEKQCA  203 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHH
Confidence            3445555556555666555555554443344455666665555555555433322221 1111222 23454  389999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhh
Q 024505          236 MVEAERTYHQRVLQILDQLEGEVS  259 (266)
Q Consensus       236 MVeaEr~YHqrv~~ILd~l~~emv  259 (266)
                      .++++-+||....++|.++...+-
T Consensus       204 ~~~a~~~~~~q~~~~l~~~~~~~~  227 (248)
T d1y2oa1         204 VAKNSAAYHSKGKELLAQKLPLWQ  227 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999887654

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=0.00028  Score=56.87  Aligned_cols=165  Identities=13%  Similarity=0.133  Sum_probs=120.3

Q ss_pred             hhhhhhhhhhcCCCC--CCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHH
Q 024505           86 TKLSEDSRKYGSDNT--CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR  163 (266)
Q Consensus        86 ~KLaeDc~kYG~en~--~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmR  163 (266)
                      ..+++--..++....  +.+...+.-+-..||.+.+.+...+..|+.-+-..|.+||...+.+. +..++.+..+||+.+
T Consensus        54 ~~f~~~L~~~~~~~~~~~~dd~~~~~~l~~f~~~~~el~~~~~~l~~~~~~~~~~pL~~f~~~d-i~~~ke~kk~fek~~  132 (268)
T d2elba1          54 HLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERD-LKEILTLKEVFQIAS  132 (268)
T ss_dssp             HHHHHHHTTGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence            334444445554432  12234467777899999999999999999999999999999998765 478889999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505          164 QEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTY  243 (266)
Q Consensus       164 QEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~Y  243 (266)
                      .+-++......+-. |.+.    ++  ....-|+..|.+.+.+-.-..-+-...|..++......-++.|++.+++.-+|
T Consensus       133 ~~yd~~l~k~~~~~-k~k~----~~--~~~~Ea~~~l~~~r~~f~~~~~d~~~~l~~l~~~k~~~~l~~l~~~~~a~~~f  205 (268)
T d2elba1         133 NDHDAAINRYSRLS-KKRE----ND--KVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISF  205 (268)
T ss_dssp             HHHHHHHHHHHTCC-CC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-ccCC----cc--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998765544332 2121    11  22234566677777777777778888999999988888899999999999999


Q ss_pred             HHHHHHHH-HHhhhhh
Q 024505          244 HQRVLQIL-DQLEGEV  258 (266)
Q Consensus       244 Hqrv~~IL-d~l~~em  258 (266)
                      |+...++| +.|...|
T Consensus       206 f~~~~~~l~~~l~~~~  221 (268)
T d2elba1         206 FKMGSENLNEQLEEFL  221 (268)
T ss_dssp             HHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            98888776 5565543

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.13  E-value=9.2  Score=28.78  Aligned_cols=63  Identities=17%  Similarity=0.136  Sum_probs=41.6

Q ss_pred             hhhhhhhhhhhhhcCCCC----CCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhc
Q 024505           83 EIGTKLSEDSRKYGSDNT----CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL  145 (266)
Q Consensus        83 Ei~~KLaeDc~kYG~en~----~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~  145 (266)
                      |.+.+|..=|.+|.....    .....++.++-..+-+.-..+=..+.++-..|.++|.+||+..+.
T Consensus        41 eYak~L~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~h~~~a~~l~~~i~~~l~~~~~  107 (288)
T d2efla1          41 SYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQ  107 (288)
T ss_dssp             HHHHHHHHHHHHTSCC-------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666777753211    112335677777666666667777888888999999999988763