Citrus Sinensis ID: 024547

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MSNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGGGNSTSLSSTVSSSAISAALEHKPSLGPAPFILGKRVRSDDDGTKGEDSISAVGPATVGPIVGPATPGGGFWALPARPDFGQVWSFAAAAAPEMVVQAASQQQHHHHQQPHQLFMQQAMGEASAARVGNYLPGHLNLLASLSGGPGSSGRREEDPR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEcccccccccccccccccccccccccEEcccccEEEccHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHcccccccccEEEEEcEEEcccccccccccccccccccccccccccccccccEcccEcccccccccccccccccccccccccccccccccccEccccccccccEEcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHcccccccHHHHHEcccccccccccccccc
Coil and Loop (DISEMBL)
msnsdgatngvsngaiidpqrqqppgngaltvkkppskdrhskvdgrgrrirMPIICAARVFQLTRelghksdgQTIEWLLRQAepsiiaatgtgttpasfSTVSVSvrgggnstslsSTVSSSAISAALehkpslgpapfilgkrvrsdddgtkgedsisavgpatvgpivgpatpgggfwalparpdfgqVWSFAAAAAPEMVVQAASQqqhhhhqqphQLFMQQAMGEASAARVGNYLPGHLNLLAslsggpgssgrreedpr
Flexible Loop (DISEMBL)
msnsdgatngvsngaiidpqrqqppgngaltvkkppskdrhskvdgrgrrirmpiICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAatgtgttpaSFSTVSVSVRGGGNSTSLSSTVSSSAISAALehkpslgpapfilGKRVRSDDDGTKGEDSisavgpatvgpIVGPATPGGGFWALPARPDFGQVWSFAAAAAPEMVVQAASQQQHHHHQQPHQLFMQQAMGEASAARVGNYLPGHLNLLaslsggpgssgrreedpr
Low Complexity Region (SEG)
MSNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEpsiiaatgtgttpasFSTVSVSVRGGGNstslsstvsssaisaalEHKPSLGPAPFILGKRVRSDDDGTKGEDSISAVGPATVGPIVGPATPGGGFWALPARPDFGQVWSFaaaaaPEMVVqaasqqqhhhhqqphqlfmqqaMGEASAARVGNYLPGHlnllaslsggpgssgRREEDPR
Disordered region (IsUnstruct)
*************************************************RIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATG************************************************************************ATVGPIVGPATPGGGFWALPARPDFGQVWSFAAAAAP***********************************GNYLPGHLNLL******************
Disordered Region (DISOPRED)
************************************************RRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATG*************************************************************************************************************************************************NYLPGHLNLL******************
Disordered Region (DISEMBL)
*********GVSNGAIIDPQRQQPPGNGALT**************GRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSV*******************AALEHKPSLGPAPFILGKRVR***********ISAVGPATVGPIVGPATPGGGFWALPARPDFGQVWSFAAAAAPEM******************LFMQQAMGEASAARVGNYLPGHLNLLASLS**************
Disordered Region (DISPRO)
*****************************************SKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVR***************************************************SAVGPATVGPIVGPATPGGGFWALPARPDFGQVWSFAAAAAPEMVVQAASQQQHHHHQ*PHQLFMQQAMGEASAARVGNYLPGHLNLLASL***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGGGNSTSLSSTVSSSAISAALEHKPSLGPAPFILGKRVRSDDDGTKGEDSISAVGPATVGPIVGPATPGGGFWALPARPDFGQVWSFAAAAAPEMVVQAASQQQHHHHQQPHQLFMQQAMGEASAARVGNYLPGHLNLLASLSGGPGSSGRREEDPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q9FMX2	250	Transcription factor TCP7	yes	no	0.830	0.884	0.640	1e-75
Q9FTA2	239	Transcription factor TCP2	no	no	0.830	0.924	0.571	2e-61
Q9C7G4	375	Transcription factor TCP2	no	no	0.308	0.218	0.792	6e-34
Q9C518	401	Transcription factor TCP8	no	no	0.312	0.206	0.771	1e-32
Q9LQF0	341	Transcription factor TCP2	no	no	0.334	0.260	0.736	2e-31
Q53PH2	448	Transcription factor PCF3	no	no	0.304	0.180	0.728	3e-31
Q93Z00	489	Transcription factor TCP1	no	no	0.293	0.159	0.722	1e-30
Q9C9L2	325	Transcription factor TCP1	no	no	0.278	0.227	0.734	8e-30
Q6ZBH6	373	Transcription factor PCF2	no	no	0.308	0.219	0.690	2e-27
A2YXQ1	373	Transcription factor PCF2	N/A	no	0.308	0.219	0.690	2e-27

>sp|Q9FMX2|TCP7_ARATH Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1

 Score =  283 bits (723), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 169/264 (64%), Positives = 186/264 (70%), Gaps = 43/264 (16%)

Query: 12  SNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHK 71
           SNGA+I+   QQP    ++ VKKPP+KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHK
Sbjct: 21  SNGALIE---QQP----SVVVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHK 73

Query: 72  SDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGGGNSTSLSSTVSSSAISAALE 131
           SDGQTIEWLLRQAEPSIIAATGTGTTPASFST SVS+RG  NSTS             L+
Sbjct: 74  SDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGATNSTS-------------LD 120

Query: 132 HKPSL---GPAPFILGKRVRSDDDGTKGEDSISAVGPATVGPIVGPATPGGGFWALPARP 188
           HKP+    G +PFILGKRVR+D      EDS ++   ++VG      T   GFWA+PARP
Sbjct: 121 HKPTSLLGGTSPFILGKRVRAD------EDSNNSHNHSSVGKDETFTTTPAGFWAVPARP 174

Query: 189 DFGQVWSFAAAAAPEMVVQAASQQQHHHHQQPHQLFMQQ------AMGEASAARVGNYLP 242
           DFGQVWSFA A   EM +Q     Q         LF+ Q      AMGEASAARVGNYLP
Sbjct: 175 DFGQVWSFAGAPQ-EMFLQQQHHHQ-------QPLFVHQQQQQQAAMGEASAARVGNYLP 226

Query: 243 GHLNLLASLSGGPGSSGRREEDPR 266
           GHLNLLASLSGG   S RREEDPR
Sbjct: 227 GHLNLLASLSGGSPGSDRREEDPR 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FTA2|TCP21_ARATH Transcription factor TCP21 OS=Arabidopsis thaliana GN=TCP21 PE=1 SV=1

 Score =  235 bits (600), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 159/278 (57%), Positives = 178/278 (64%), Gaps = 57/278 (20%)

Query: 1   MSNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAAR 60
           M+++DGA   VSNG I++    + P N    VKKPPSKDRHSKVDGRGRRIRMPIICAAR
Sbjct: 1   MADNDGA---VSNGIIVEQTSNKGPLNA---VKKPPSKDRHSKVDGRGRRIRMPIICAAR 54

Query: 61  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGGGNSTSLSST 120
           VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFST S+S             
Sbjct: 55  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASLST------------ 102

Query: 121 VSSSAISAALEHKPSLGPAPFILGKR-VRSDDDGTKGEDSISAVGPATVGPIVGPATPGG 179
                             +PF LGKR VR+++  + G          T+G  +      G
Sbjct: 103 -----------------SSPFTLGKRVVRAEEGESGGGGGGGLTVGHTMGTSLMGGGGSG 145

Query: 180 GFWALPARPDFGQVWSFAAAAAPEMVVQAASQQQHHHHQQPHQLFMQQ------------ 227
           GFWA+PARPDFGQVWSFA  A PEMV    +QQ     QQP  LF++             
Sbjct: 146 GFWAVPARPDFGQVWSFATGAPPEMVF---AQQ-----QQPATLFVRHQQQQQASAAAAA 197

Query: 228 AMGEASAARVGNYLPG-HLNLLASLSGGPGSSGRREED 264
           AMGEASAARVGNYLPG HLNLLASLSGG   SGRRE+D
Sbjct: 198 AMGEASAARVGNYLPGHHLNLLASLSGGANGSGRREDD 235

Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7G4|TCP22_ARATH Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1

 Score =  144 bits (363), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 65/82 (79%), Positives = 76/82 (92%)

Query: 34  KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATG 93
           K P+KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAEP+IIA+TG
Sbjct: 60  KKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTG 119

Query: 94  TGTTPASFSTVSVSVRGGGNST 115
           TGT PA+FST++ S+R GG ST
Sbjct: 120 TGTIPANFSTLNASLRSGGGST 141

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C518|TCP8_ARATH Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 76/83 (91%)

Query: 34  KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATG 93
           K  +KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAEP+I+AATG
Sbjct: 57  KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATG 116

Query: 94  TGTTPASFSTVSVSVRGGGNSTS 116
           TGT PA+FST+SVS+R  G++ S
Sbjct: 117 TGTIPANFSTLSVSLRSSGSTLS 139

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQF0|TCP23_ARATH Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/91 (73%), Positives = 79/91 (86%), Gaps = 2/91 (2%)

Query: 34  KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATG 93
           K PSKDRH KVDGRGRRIRMP ICAARVFQLTREL HKSDG+TIEWLL+QAEP+IIAATG
Sbjct: 52  KRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATG 111

Query: 94  TGTTPASFSTVSVSVRGGGNSTSLSSTVSSS 124
           TGT PA+ ST+++S+R  G  ++LS+ +S S
Sbjct: 112 TGTIPANISTLNISLRSSG--STLSAPLSKS 140

Arabidopsis thaliana (taxid: 3702)

>sp|Q53PH2|PCF3_ORYSJ Transcription factor PCF3 OS=Oryza sativa subsp. japonica GN=PCF3 PE=2 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/81 (72%), Positives = 75/81 (92%)

Query: 36  PSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTG 95
           P+KDRH+KV+GRGRRIRMP +CAARVFQLTRELGHK+DG+TIEWLL+QAEP+I+AATGTG
Sbjct: 151 PTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTG 210

Query: 96  TTPASFSTVSVSVRGGGNSTS 116
           T PA+FS+++VS+R   + +S
Sbjct: 211 TIPANFSSLAVSLRSAASHSS 231

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93Z00|TCP14_ARATH Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/83 (72%), Positives = 73/83 (87%), Gaps = 5/83 (6%)

Query: 29  ALTVKKPP-----SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQ 83
            +  KKPP     +KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+Q
Sbjct: 104 VVAAKKPPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQ 163

Query: 84  AEPSIIAATGTGTTPASFSTVSV 106
           AEPS+IAATGTGT PA+F+++++
Sbjct: 164 AEPSVIAATGTGTIPANFTSLNI 186

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9L2|TCP15_ARATH Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1

 Score =  130 bits (328), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 58/79 (73%), Positives = 72/79 (91%), Gaps = 5/79 (6%)

Query: 33  KKPP-----SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPS 87
           KKPP     +KDRH+KV+GRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAEP+
Sbjct: 43  KKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPA 102

Query: 88  IIAATGTGTTPASFSTVSV 106
           +IAATGTGT PA+F+++++
Sbjct: 103 VIAATGTGTIPANFTSLNI 121

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZBH6|PCF2_ORYSJ Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 70/84 (83%), Gaps = 2/84 (2%)

Query: 28  GALTVKKPP--SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 85
           G   V+KPP  ++DRH+KV+GRGRRIRMP  CAAR+FQLTRELGHKSDG+TI WLL+Q+E
Sbjct: 64  GMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSE 123

Query: 86  PSIIAATGTGTTPASFSTVSVSVR 109
           P+IIAATGTGT PA  +TV   +R
Sbjct: 124 PAIIAATGTGTVPAIATTVDGVLR 147

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YXQ1|PCF2_ORYSI Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=4 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 70/84 (83%), Gaps = 2/84 (2%)

Query: 28  GALTVKKPP--SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 85
           G   V+KPP  ++DRH+KV+GRGRRIRMP  CAAR+FQLTRELGHKSDG+TI WLL+Q+E
Sbjct: 64  GMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSE 123

Query: 86  PSIIAATGTGTTPASFSTVSVSVR 109
           P+IIAATGTGT PA  +TV   +R
Sbjct: 124 PAIIAATGTGTVPAIATTVDGVLR 147

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
356536423	246	PREDICTED: transcription factor TCP7-lik	0.921	0.995	0.711	1e-92
225462562	255	PREDICTED: transcription factor TCP7-lik	0.906	0.945	0.703	1e-82
449451743	256	PREDICTED: transcription factor TCP7-lik	0.951	0.988	0.706	1e-79
350539934	266	TCP transcription factor 14 [Solanum lyc	0.939	0.939	0.650	2e-79
224096516	269	predicted protein [Populus trichocarpa]	0.947	0.936	0.706	2e-77
302399087	288	TCP domain class transcription factor [M	0.954	0.881	0.6	8e-77
449464308	264	PREDICTED: transcription factor TCP7-lik	0.917	0.924	0.646	1e-76
357444897	257	Transcription factor PCF2 [Medicago trun	0.906	0.937	0.643	4e-75
224083882	272	predicted protein [Populus trichocarpa]	0.969	0.948	0.707	1e-74
15237274	250	transcription factor TCP7 [Arabidopsis t	0.830	0.884	0.640	6e-74

>gi|356536423|ref|XP_003536737.1| PREDICTED: transcription factor TCP7-like [Glycine max]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/267 (71%), Positives = 209/267 (78%), Gaps = 22/267 (8%)

Query: 1   MSNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAAR 60
           MSNSD  TNGVSNGAIID QRQQ     AL VKKPPSKDRHSKVDGRGRRIRMPIICAAR
Sbjct: 1   MSNSDATTNGVSNGAIIDAQRQQ-----ALAVKKPPSKDRHSKVDGRGRRIRMPIICAAR 55

Query: 61  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGGGNSTSLSST 120
           VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATG+GTTPASFS+VS+SVR   NS S  S+
Sbjct: 56  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSSVSLSVRAAANSLSSPSS 115

Query: 121 VSSSAISAALEHKPS-LGPAPFILGKRVRSDDDGTKGEDSISAVGPATVGPIVGPATPGG 179
            S        +HKP  L P PFILGKR+R+D+D +K  D   +VGP+ VGP   P     
Sbjct: 116 TS--------DHKPQLLSPTPFILGKRIRTDEDSSK--DEAVSVGPSLVGPSTPP----- 160

Query: 180 GFWALPARPDFGQVWSFAAAAAPEMVVQAASQQQHHHHQQPHQLFMQQAMGEASAARVGN 239
           G WALPARPDFGQ+WSFAAAAAPEM V  + QQQ       H+   QQA+GEASAARVGN
Sbjct: 161 GLWALPARPDFGQIWSFAAAAAPEM-VSVSQQQQASLFAHHHRQQQQQAIGEASAARVGN 219

Query: 240 YLPGHLNLLASLSGGPGSSGRREEDPR 266
           YLPGHLNLLASLSGGPG+SGRR+++PR
Sbjct: 220 YLPGHLNLLASLSGGPGNSGRRDDEPR 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462562|ref|XP_002268058.1| PREDICTED: transcription factor TCP7-like [Vitis vinifera]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 197/280 (70%), Positives = 210/280 (75%), Gaps = 39/280 (13%)

Query: 1   MSNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAAR 60
           MS SDGA NGV+NGAI+D QRQQ PGNGAL VKKPP+KDRHSKVDGRGRRIRMPIICAAR
Sbjct: 1   MSTSDGAANGVTNGAIVDSQRQQQPGNGALAVKKPPAKDRHSKVDGRGRRIRMPIICAAR 60

Query: 61  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGGGNSTSLSST 120
           VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS+VSVSVRGGG+++     
Sbjct: 61  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSVSVRGGGSTS----- 115

Query: 121 VSSSAISAALEHKPS---LGPAPFILGKRVRSDDD---GTKGEDSISAVGPATVGPIVGP 174
                 SAAL+ KPS   L P PFILGKR+R DDD   G K E          V      
Sbjct: 116 ------SAALDQKPSQPLLSPTPFILGKRLRGDDDVDGGAKDE---------VVAAAAAA 160

Query: 175 ATPGGGFWALPARPDFGQVWSFAAAAA---PEMVVQAASQQQHHHHQQP--HQLFMQQAM 229
           A   GGFWA+PARPDFGQVWSFAAAAA   PEMVVQA +        QP     FMQQ M
Sbjct: 161 AAAAGGFWAVPARPDFGQVWSFAAAAAAAPPEMVVQAPTM-----ASQPTISGRFMQQPM 215

Query: 230 GEASAARVGNYLP---GHLNLLASLSGGPGSSGRREEDPR 266
           GEASAARVGNYLP   GHLNLLASLSG P SSGRR++DPR
Sbjct: 216 GEASAARVGNYLPIAQGHLNLLASLSGAPASSGRRDDDPR 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451743|ref|XP_004143620.1| PREDICTED: transcription factor TCP7-like [Cucumis sativus] gi|449528835|ref|XP_004171408.1| PREDICTED: transcription factor TCP7-like [Cucumis sativus]

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 190/269 (70%), Positives = 208/269 (77%), Gaps = 16/269 (5%)

Query: 1   MSNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAAR 60
           MSNSD  TNGVSNGA ID  +     NGAL VKKPPSKDRHSKVDGRGRRIRMPIICAAR
Sbjct: 1   MSNSD-HTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAAR 59

Query: 61  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGGGNSTSLSST 120
           VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPA+FS+VS+SVRG G  ++  S+
Sbjct: 60  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGGSASLSS 119

Query: 121 VSSSAISAALEH-KPSLGPAPFILGKRVRSDDDGTKGEDSISAVGPATVGPIVGPATPGG 179
            SS+  + +L   +P  GP PFILGKRVRSDDD    +D    VG A VG IVGP  P G
Sbjct: 120 PSSTTSTLSLSRPQPLSGPTPFILGKRVRSDDD---AKDDALGVGQA-VGSIVGPTGP-G 174

Query: 180 GFWALPARPDFGQVWSFAAAAAPEMVVQ--AASQQQHHHHQQPHQLFMQQAMGEASAARV 237
           G+WA+PARPD+GQVWSFAAAA  EMVVQ    +QQ     QQ      QQ + EASAARV
Sbjct: 175 GYWAIPARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQ------QQPIREASAARV 228

Query: 238 GNYLPGHLNLLASLSGGPGSSGRREEDPR 266
           GNYLPGHLNLLASLSGG G SGRRE+DPR
Sbjct: 229 GNYLPGHLNLLASLSGG-GGSGRREDDPR 256

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539934|ref|NP_001234581.1| TCP transcription factor 14 [Solanum lycopersicum] gi|306416839|gb|ADM87263.1| TCP transcription factor 14 [Solanum lycopersicum]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 179/275 (65%), Positives = 197/275 (71%), Gaps = 25/275 (9%)

Query: 7   ATNGVSNGAIIDPQRQQ---PPG---NGALTVKKPPSKDRHSKVDGRGRRIRMPIICAAR 60
           +T+   NGAIIDPQRQQ   P G   NGALTVKKPP KDRHSKVDGRGRRIRMPI+CAAR
Sbjct: 2   STSAEGNGAIIDPQRQQQQAPTGVGTNGALTVKKPPVKDRHSKVDGRGRRIRMPIVCAAR 61

Query: 61  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGGGNSTSLSST 120
           VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGT PASFSTVSVSVR   NST  +S 
Sbjct: 62  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFSTVSVSVR---NST--ASL 116

Query: 121 VSSSAISAALEHKPS--LGPAPFILGKRVRSDDDGTKGEDSISAVGPATVGPIVGPATPG 178
           VSS  +SA L+ K S  + PAPFILGKR+RSDD+  +  +       A          P 
Sbjct: 117 VSS--LSAPLDQKSSQMISPAPFILGKRLRSDDENIENGNKDDVAVAAGG---ATAVGPT 171

Query: 179 GGFWALPARPDFGQVWSFAAAAAPEMVVQAASQQQHHHH---QQPHQLFMQQAMGEASAA 235
            GFWA+PARPDFGQ+WSFAAA  PEM+V  ++                F QQ MGEASAA
Sbjct: 172 AGFWAVPARPDFGQIWSFAAAPPPEMMVPTSAAAAAAAAAALSSQSSRFFQQQMGEASAA 231

Query: 236 RVGNYLP---GHLNLLASLSGGPG-SSGRREEDPR 266
           RVGNYLP   GHLNLLASLSG P  SSGRR++D R
Sbjct: 232 RVGNYLPMTQGHLNLLASLSGPPQPSSGRRDDDGR 266

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096516|ref|XP_002310642.1| predicted protein [Populus trichocarpa] gi|222853545|gb|EEE91092.1| predicted protein [Populus trichocarpa]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 200/283 (70%), Positives = 216/283 (76%), Gaps = 31/283 (10%)

Query: 1   MSNSDGATNGVSNGAIIDPQRQQPPG---------NGALTVKKPPSKDRHSKVDGRGRRI 51
           MS++ GA N   NG++IDPQR QPPG         NGAL  KKPPSKDRHSKVDGRGRRI
Sbjct: 1   MSDNSGAVN---NGSLIDPQRNQPPGGGGGGGGVTNGALVAKKPPSKDRHSKVDGRGRRI 57

Query: 52  RMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGG 111
           RMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVR G
Sbjct: 58  RMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRAG 117

Query: 112 GNSTSLSSTVSSSAISA-ALEHKPSLGPAPFILGKRVRSDDDGTKGEDSISA--VGPATV 168
           GNS S+SS  S++     +LEHKP LGPAPFILGKR+R ++DG  G        VGP T+
Sbjct: 118 GNSNSISSLSSNNIHPVGSLEHKPLLGPAPFILGKRMRPEEDGNGGGKDDDGVPVGP-TI 176

Query: 169 GPIVGP-ATPG-GGFWALPARPDFGQVWSFAAAAAPEMVVQAASQQQHHHHQQPHQLFMQ 226
           G ++GP AT G GGFWALPARPDF   W FAAAA PEMVVQ  + QQ         LFM 
Sbjct: 177 GSLMGPTATAGPGGFWALPARPDF---WGFAAAAPPEMVVQPTAVQQ-------SSLFMH 226

Query: 227 Q---AMGEASAARVGNYLPGHLNLLASLSGGPGSSGRREEDPR 266
           Q   AMGEASAARVGNYLPGHLNLLASLS G GSSGRRE+D R
Sbjct: 227 QHAAAMGEASAARVGNYLPGHLNLLASLSSGHGSSGRREDDHR 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399087|gb|ADL36838.1| TCP domain class transcription factor [Malus x domestica]

 Score =  292 bits (748), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 180/300 (60%), Positives = 207/300 (69%), Gaps = 46/300 (15%)

Query: 1   MSNSDGATNGVSNG-----AIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPI 55
           MSNS+   N ++NG     A+++   Q+P  NG L VKKPPSKDRHSKVDGRGRRIRMPI
Sbjct: 1   MSNSEAPNNELTNGGGGAGAMVEQTSQRPSSNGVLAVKKPPSKDRHSKVDGRGRRIRMPI 60

Query: 56  ICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGGGNST 115
           ICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVS+RGG    
Sbjct: 61  ICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSLRGG---- 116

Query: 116 SLSSTVSSSAISAALEHKPS-LGPAPFILGKRVRS------------------------- 149
              +T SS+  + + +HKP  LGP PFILGKRVR                          
Sbjct: 117 ---NTSSSAPSTTSSDHKPQLLGPTPFILGKRVRGSLDDPENNHSHNHNHNHDASAAKDP 173

Query: 150 DDDGTKGEDSISAVGPATVGPIVGPATPG-GGFWALPARPDFGQVWSFAAAAAPEMVVQA 208
            D+    + ++S VG  ++  ++GP   G GGFWA    P FGQVWSFAA   PE++ Q+
Sbjct: 174 SDNHANNDGAVSVVG-HSMASMLGPNAGGPGGFWA----PHFGQVWSFAATPPPELMAQS 228

Query: 209 A-SQQQHHHHQQPHQLFMQQA-MGEASAARVGNYLPGHLNLLASLSGGPGSSGRREEDPR 266
           A S QQ   H Q H LF+QQ  MGEASAARVGNYLPGHLNLLASLSGG G+SGRRE+D R
Sbjct: 229 ALSHQQQQQHHQQHSLFLQQQPMGEASAARVGNYLPGHLNLLASLSGGHGNSGRREDDQR 288

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464308|ref|XP_004149871.1| PREDICTED: transcription factor TCP7-like [Cucumis sativus] gi|449518077|ref|XP_004166070.1| PREDICTED: transcription factor TCP7-like [Cucumis sativus]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 185/286 (64%), Positives = 208/286 (72%), Gaps = 42/286 (14%)

Query: 1   MSNSDGATNGVSNGAIIDP----QRQQPPGNGA-------LTVKKPPSKDRHSKVDGRGR 49
           MS SDG  N  +NGAIIDP     R Q  GN +       L VKKPPSKDRHSKVDGRGR
Sbjct: 1   MSASDGVNN--NNGAIIDPSHQQHRHQIQGNQSSNNAATPLPVKKPPSKDRHSKVDGRGR 58

Query: 50  RIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVR 109
           RIRMPI+CAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFST+S S+R
Sbjct: 59  RIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLR 118

Query: 110 GGGNSTSLSSTVSSSAISAALEHKPSLGPAPFILGKRVRSDDDGTKGEDSISA-----VG 164
                     T  ++++S   +HKP L PAPFILGKRVR+DDDG   +D+  A     VG
Sbjct: 119 ----------TPPAASLS---DHKPLLPPAPFILGKRVRTDDDGANKDDTGGAGAGISVG 165

Query: 165 PATVGPIVGPATPGGGFWALPARPDFGQVWSF----AAAAAPEMVVQAASQQQHHHHQQP 220
           P ++G I+GPA   GG+WA+PAR DFGQVWSF    AAAAAPEMV+Q  +        Q 
Sbjct: 166 P-SIGSIMGPAV-AGGYWAIPARSDFGQVWSFAAAAAAAAAPEMVIQPTAVS-----HQA 218

Query: 221 HQLFMQQAMGEASAARVGNYLPGHLNLLASLSGGPGSSGRREEDPR 266
                QQ+MGEASAA+VGNYLPGHLNLLASLSGGPGSSGRR+ D R
Sbjct: 219 SLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSGRRDNDHR 264

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444897|ref|XP_003592726.1| Transcription factor PCF2 [Medicago truncatula] gi|355481774|gb|AES62977.1| Transcription factor PCF2 [Medicago truncatula]

 Score =  287 bits (734), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 179/278 (64%), Positives = 200/278 (71%), Gaps = 37/278 (13%)

Query: 1   MSNSDGATNGVS--NGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICA 58
           MSN DG T   +  NG+IIDP RQQ      L VKKPP+KDRHSKVDGRGRRIRMPIICA
Sbjct: 1   MSNPDGTTTTTTTTNGSIIDPNRQQ------LAVKKPPAKDRHSKVDGRGRRIRMPIICA 54

Query: 59  ARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGGGNSTSLS 118
           ARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS++SVS+RG       S
Sbjct: 55  ARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSVSLRG-------S 107

Query: 119 STVSSSAISAALEHKPSLGPAPFILGKRVRSDDDGTKGEDSISAVGPATVGPIVGPATPG 178
           S    S  S +L+HKP L P PFILGKR+R+DDD +       A+   +VG +  PA   
Sbjct: 108 SNSLPSPSSTSLDHKPLLSPTPFILGKRIRTDDDSSSSSAKDDAL---SVGSLSTPA--- 161

Query: 179 GGFWALPARPDFGQVWSF----AAAAAPEMVVQAASQQQHHHHQQPHQLF--------MQ 226
              WALPARPDFGQ+WSF    A A  PEM+VQ+ SQQQ   HQ     F         Q
Sbjct: 162 -ALWALPARPDFGQIWSFAAAAAGAPPPEMMVQSLSQQQ---HQVQANFFAHHHQQQQHQ 217

Query: 227 QAMGEASAARVGNYLPGHLNLLASLSGGPGSSGRREED 264
           QAMGEASAARVGNYLPGHLNLLASLSGG G+SGRR+++
Sbjct: 218 QAMGEASAARVGNYLPGHLNLLASLSGGHGNSGRRDDE 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083882|ref|XP_002307157.1| predicted protein [Populus trichocarpa] gi|222856606|gb|EEE94153.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 198/280 (70%), Positives = 214/280 (76%), Gaps = 22/280 (7%)

Query: 1   MSNSDGATNGVSNGAIIDPQRQQPPG--------NGALTVKKPPSKDRHSKVDGRGRRIR 52
           MS++ GA N   NGA+IDPQR QPPG        NGAL VKKPPSKDRHSKVDGRGRRIR
Sbjct: 1   MSDNSGAVN---NGALIDPQRNQPPGGGGGGGATNGALAVKKPPSKDRHSKVDGRGRRIR 57

Query: 53  MPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGGG 112
           MPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVR GG
Sbjct: 58  MPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRAGG 117

Query: 113 NSTSLSSTVSSSAISAA-LEHKPSLGPAPFILGKRVRSDDDGTKGEDSISA-VGPATVGP 170
           NS S+SS  S++  SAA L+HKP LGPAPFILGKR+R ++DG  G+D     VGP T+G 
Sbjct: 118 NSNSISSLSSNNVHSAASLDHKPLLGPAPFILGKRMRPEEDGNGGKDDGGVPVGP-TIGS 176

Query: 171 IVGP----ATPGGGFWALPARPDFGQVWSFAAAAAPEMVVQAASQQQHHHHQQPHQLFMQ 226
           ++GP    A   GGFWALPAR DF   W F AAA PEMVVQ  + QQ             
Sbjct: 177 LMGPTATAAAGSGGFWALPARADF---WGF-AAAPPEMVVQPTAVQQSSLFMHQQHAAAA 232

Query: 227 QAMGEASAARVGNYLPGHLNLLASLSGGPGSSGRREEDPR 266
            AMGEASAAR+GNYLPGHLNLLASLSGG GSSGRREED R
Sbjct: 233 AAMGEASAARLGNYLPGHLNLLASLSGGSGSSGRREEDQR 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237274|ref|NP_197719.1| transcription factor TCP7 [Arabidopsis thaliana] gi|75171749|sp|Q9FMX2.1|TCP7_ARATH RecName: Full=Transcription factor TCP7 gi|10177817|dbj|BAB11183.1| unnamed protein product [Arabidopsis thaliana] gi|332005764|gb|AED93147.1| transcription factor TCP7 [Arabidopsis thaliana]

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 169/264 (64%), Positives = 186/264 (70%), Gaps = 43/264 (16%)

Query: 12  SNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHK 71
           SNGA+I+   QQP    ++ VKKPP+KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHK
Sbjct: 21  SNGALIE---QQP----SVVVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHK 73

Query: 72  SDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGGGNSTSLSSTVSSSAISAALE 131
           SDGQTIEWLLRQAEPSIIAATGTGTTPASFST SVS+RG  NSTS             L+
Sbjct: 74  SDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGATNSTS-------------LD 120

Query: 132 HKPSL---GPAPFILGKRVRSDDDGTKGEDSISAVGPATVGPIVGPATPGGGFWALPARP 188
           HKP+    G +PFILGKRVR+D      EDS ++   ++VG      T   GFWA+PARP
Sbjct: 121 HKPTSLLGGTSPFILGKRVRAD------EDSNNSHNHSSVGKDETFTTTPAGFWAVPARP 174

Query: 189 DFGQVWSFAAAAAPEMVVQAASQQQHHHHQQPHQLFMQQ------AMGEASAARVGNYLP 242
           DFGQVWSFA A   EM +Q     Q         LF+ Q      AMGEASAARVGNYLP
Sbjct: 175 DFGQVWSFAGAPQ-EMFLQQQHHHQ-------QPLFVHQQQQQQAAMGEASAARVGNYLP 226

Query: 243 GHLNLLASLSGGPGSSGRREEDPR 266
           GHLNLLASLSGG   S RREEDPR
Sbjct: 227 GHLNLLASLSGGSPGSDRREEDPR 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2150803	239	TCP11 "AT5G08330" [Arabidopsis	0.379	0.422	0.654	9.9e-52
TAIR|locus:2166796	250	AT5G23280 "AT5G23280" [Arabido	0.631	0.672	0.560	1.2e-44
TAIR|locus:2030321	375	AT1G72010 "AT1G72010" [Arabido	0.548	0.389	0.425	1.7e-27
TAIR|locus:2014661	341	AT1G35560 "AT1G35560" [Arabido	0.319	0.249	0.623	5.1e-26
TAIR|locus:2196220	401	TCP8 "AT1G58100" [Arabidopsis	0.421	0.279	0.492	8.7e-24
TAIR|locus:2079202	489	TCP14 "AT3G47620" [Arabidopsis	0.327	0.177	0.554	3.1e-22
TAIR|locus:2205065	325	TCP15 "AT1G69690" [Arabidopsis	0.379	0.310	0.490	1.9e-21
TAIR|locus:2092020	314	TCP20 "AT3G27010" [Arabidopsis	0.251	0.213	0.647	9.2e-20
TAIR|locus:2166518	293	AT5G51910 "AT5G51910" [Arabido	0.199	0.180	0.811	2.5e-19
TAIR|locus:2043659	356	TCP9 "TCP domain protein 9" [A	0.233	0.174	0.677	3.1e-19

TAIR|locus:2150803 TCP11 "AT5G08330" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
 Identities = 70/107 (65%), Positives = 77/107 (71%)

Query:     1 MSNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAAR 60
             M+++DGA   VSNG I++    + P N    VKKPPSKDRHSKVDGRGRRIRMPIICAAR
Sbjct:     1 MADNDGA---VSNGIIVEQTSNKGPLNA---VKKPPSKDRHSKVDGRGRRIRMPIICAAR 54

Query:    61 VFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVS 107
             VFQLTRELGHKSDGQTIEWLLRQAE               FST S+S
Sbjct:    55 VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASLS 101

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2166796 AT5G23280 "AT5G23280" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 111/198 (56%), Positives = 126/198 (63%)

Query:     2 SNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARV 61
             +N+DG     SNGA+I+   QQP    ++ VKKPP+KDRHSKVDGRGRRIRMPIICAARV
Sbjct:    12 NNNDGLMIS-SNGALIE---QQP----SVVVKKPPAKDRHSKVDGRGRRIRMPIICAARV 63

Query:    62 FQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGNXXXXXXXX 121
             FQLTRELGHKSDGQTIEWLLRQAE               FST SVS+RG  N        
Sbjct:    64 FQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGATNSTSL---- 119

Query:   122 XXXXXXXXXEHKP-SL--GPAPFILGKRVRSDDDGTKGEDSISAVGPATVGPIVGPATPG 178
                      +HKP SL  G +PFILGKRVR+D+D     +  S+VG           TP 
Sbjct:   120 ---------DHKPTSLLGGTSPFILGKRVRADEDSNNSHNH-SSVGKDETFT----TTPA 165

Query:   179 GGFWALPARPDFGQVWSF 196
             G FWA+PARPDFGQVWSF
Sbjct:   166 G-FWAVPARPDFGQVWSF 182

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2030321 AT1G72010 "AT1G72010" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
 Identities = 71/167 (42%), Positives = 86/167 (51%)

Query:     4 SDGATNGVSNGAIIDPQRQQPPGNGALTVK---KPPSKDRHSKVDGRGRRIRMPIICAAR 60
             S G    +S  A          G+    VK   K P+KDRH+KVDGRGRRIRMP +CAAR
Sbjct:    29 SSGQHGNISTSATSSTSTSS--GSALAVVKSAVKKPTKDRHTKVDGRGRRIRMPAMCAAR 86

Query:    61 VFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGNXXXXXXX 120
             VFQLTRELGHKSDG+TIEWLL+QAE               FST++ S+R GG        
Sbjct:    87 VFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFSTLNASLRSGGGSTLFSQA 146

Query:   121 XXXXXXXXXXEHKPSLGPAPF-ILGKRVRSDDDGTKGEDSISAVGPA 166
                         K S  P  F   G  +  D++GT G    S+V P+
Sbjct:   147 S-----------KSSSSPLSFHSTGMSLYEDNNGTNG----SSVDPS 178

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2014661 AT1G35560 "AT1G35560" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
 Identities = 53/85 (62%), Positives = 60/85 (70%)

Query:    29 ALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXX 88
             A T  K PSKDRH KVDGRGRRIRMP ICAARVFQLTREL HKSDG+TIEWLL+QAE   
Sbjct:    47 AKTPAKRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAI 106

Query:    89 XXXXXXXXXXXXFSTVSVSVRGGGN 113
                          ST+++S+R  G+
Sbjct:   107 IAATGTGTIPANISTLNISLRSSGS 131

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2196220 TCP8 "AT1G58100" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 63/128 (49%), Positives = 76/128 (59%)

Query:     2 SNSDGATNGVSNGA--IIDPQ-----RQQPPGNGAL---------TVKKPPSKDRHSKVD 45
             +N+D A      GA  ++D       R  PP +  L         T  K  +KDRH+KVD
Sbjct:     9 NNNDTAAVATGGGARQLVDASLSIVPRSTPPEDSTLATTSSTATATTTKRSTKDRHTKVD 68

Query:    46 GRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVS 105
             GRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE               FST+S
Sbjct:    69 GRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSTLS 128

Query:   106 VSVRGGGN 113
             VS+R  G+
Sbjct:   129 VSLRSSGS 136

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0001047 "core promoter binding" evidence=IDA

TAIR|locus:2079202 TCP14 "AT3G47620" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 3.1e-22, P = 3.1e-22
 Identities = 51/92 (55%), Positives = 65/92 (70%)

Query:    27 NGALTVKKPP-----SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLL 81
             +  +  KKPP     +KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL
Sbjct:   102 SAVVAAKKPPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLL 161

Query:    82 RQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGN 113
             +QAE               F+++++S+R  G+
Sbjct:   162 QQAEPSVIAATGTGTIPANFTSLNISLRSSGS 193

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009739 "response to gibberellin stimulus" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IEP

GO:0008283 "cell proliferation" evidence=IGI

GO:0010229 "inflorescence development" evidence=IGI

GO:0031347 "regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009735 "response to cytokinin stimulus" evidence=IMP

TAIR|locus:2205065 TCP15 "AT1G69690" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 54/110 (49%), Positives = 69/110 (62%)

Query:     5 DGATNGVSNGAIIDPQRQQPPGNGALTVKKPP-----SKDRHSKVDGRGRRIRMPIICAA 59
             D +T+  S    I     +P        KKPP     +KDRH+KV+GRGRRIRMP +CAA
Sbjct:    19 DSSTSSSSTSLAIISTTSEPNSEP----KKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAA 74

Query:    60 RVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVR 109
             RVFQLTRELGHKSDG+TIEWLL+QAE               F+++++S+R
Sbjct:    75 RVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLR 124

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0008283 "cell proliferation" evidence=IGI

GO:0010229 "inflorescence development" evidence=IGI

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009735 "response to cytokinin stimulus" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2092020 TCP20 "AT3G27010" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 44/68 (64%), Positives = 56/68 (82%)

Query:    18 DPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTI 77
             +P ++    N  L  K+  +KDRH+KV+GRGRRIRMP +CAAR+FQLTRELGHKSDG+TI
Sbjct:    60 EPNKKSQNQN-QLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETI 118

Query:    78 EWLLRQAE 85
             +WLL+QAE
Sbjct:   119 QWLLQQAE 126

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0000987 "core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008361 "regulation of cell size" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

TAIR|locus:2166518 AT5G51910 "AT5G51910" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 43/53 (81%), Positives = 48/53 (90%)

Query:    33 KKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 85
             K+P SKDRH+KV+GRGRRIRMP  CAARVFQLTRELGHKSDG+TI WLL +AE
Sbjct:    53 KRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAE 105

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2043659 TCP9 "TCP domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 42/62 (67%), Positives = 50/62 (80%)

Query:    24 PPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQ 83
             PP +    +K+  +KDRH+KV+GRGRRIRMP  CAAR+FQLTRELGHKSDG+TI WLL  
Sbjct:    62 PPSSTGPPLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEN 121

Query:    84 AE 85
             AE
Sbjct:   122 AE 123

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0008361 "regulation of cell size" evidence=IGI

GO:0048364 "root development" evidence=IMP

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FMX2	TCP7_ARATH	No assigned EC number	0.6401	0.8308	0.884	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
pfam03634	122	pfam03634, TCP, TCP family transcription factor	3e-38
PLN03106	447	PLN03106, TCP2, Protein TCP2; Provisional	0.001

>gnl|CDD|217650 pfam03634, TCP, TCP family transcription factor

 Score =  129 bits (327), Expect = 3e-38
 Identities = 43/100 (43%), Positives = 58/100 (58%)

Query: 30  LTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSII 89
              KK     RH+KV GR RR+R+   CAAR F L  ELG  S  +TIEWLL+QA+P+II
Sbjct: 1   AAGKKDRHSKRHTKVGGRDRRVRLSAECAARFFDLQDELGFDSPSKTIEWLLQQAKPAII 60

Query: 90  AATGTGTTPASFSTVSVSVRGGGNSTSLSSTVSSSAISAA 129
           A TGT T PA  S+   + +   +    +S ++ +  S A
Sbjct: 61  ALTGTSTPPAKCSSAKSAAKSSKDPQQAASALNLAKESRA 100

This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure. Length = 122

>gnl|CDD|215579 PLN03106, TCP2, Protein TCP2; Provisional

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 38  KDRHSKV----DGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSI 88
           KDRHSKV      R RR+R+ +  A + + L   LG+    + +EWL++ AE SI
Sbjct: 75  KDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSI 129

Length = 447

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
PF03634	138	TCP: TCP family transcription factor; InterPro: IP	100.0
PLN03105	324	TCP24 transcription factor TCP24 (TEOSINTE BRANCHE	99.94
PLN03106	447	TCP2 Protein TCP2; Provisional	99.94

>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]

Probab=100.00  E-value=5.3e-35  Score=234.56  Aligned_cols=66  Identities=35%  Similarity=0.617  Sum_probs=62.2

Q ss_pred             CCCCCCccccc----CCCceeecCHHHHHHhhhhhhhhCCCCCchHHHHHHHhchHHHHHhhCCCCCCCc
Q 024547           35 PPSKDRHSKVD----GRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPAS  100 (266)
Q Consensus        35 ~~~KDRHSKV~----~RDRRvRLs~~~A~rfF~LQDeLGfdkaSkTIEWLL~qak~AI~~atgtgt~Pas  100 (266)
                      +.+||||||||    +||||||||++||++||+||||||||||||||||||++||+||++|+.+.+.|.+
T Consensus         2 ~~~kdrhski~Ta~g~RdRRvRLs~~~Ar~FFdLQDmLGfDKaSKTveWLL~kSk~AIkeL~~~~~~~~s   71 (138)
T PF03634_consen    2 AGKKDRHSKIHTAQGPRDRRVRLSLEIARKFFDLQDMLGFDKASKTVEWLLTKSKKAIKELTQSSSSSSS   71 (138)
T ss_pred             CCCCCCCCccccccCCCCCceecCHHHHHHHHHHHHHhcCCCCCchHHHHHHhCHHHHHHHHHhhccccc
Confidence            46899999999    9999999999999999999999999999999999999999999999999766654

The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].

>PLN03105 TCP24 transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional

Probab=99.94  E-value=1.5e-27  Score=217.50  Aligned_cols=82  Identities=32%  Similarity=0.502  Sum_probs=73.2

Q ss_pred             CccccCCCCCCCCCCCccccCC-CCCCCCccccc----CCCceeecCHHHHHHhhhhhhhhCCCCCchHHHHHHHhchHH
Q 024547           13 NGAIIDPQRQQPPGNGALTVKK-PPSKDRHSKVD----GRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPS   87 (266)
Q Consensus        13 ng~ivd~~~q~~~~~~~~~~kk-~~~KDRHSKV~----~RDRRvRLs~~~A~rfF~LQDeLGfdkaSkTIEWLL~qak~A   87 (266)
                      |.+|...|.  .|++++++++| .++|||||||+    +||||||||++||++||+|||||||||+||||||||++||+|
T Consensus        27 ~~gl~r~w~--~pssrivrvsRa~g~KDRHSKI~TAqGpRDRRvRLSv~iArkFFdLQDmLGFDKaSKTVEWLL~kSk~A  104 (324)
T PLN03105         27 NTGLMRNWN--NPSSRIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDS  104 (324)
T ss_pred             cccccccCC--CCcceEEEeeccCCCCCcccceecccCCcccceecCHHHHHHHhhHHHHhCCCCcchHHHHHHHHhHHH
Confidence            556666554  47888888865 66999999999    999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCC
Q 024547           88 IIAATGTGT   96 (266)
Q Consensus        88 I~~atgtgt   96 (266)
                      |++|+...+
T Consensus       105 I~ELp~l~~  113 (324)
T PLN03105        105 ITDLPLLNT  113 (324)
T ss_pred             HHhcccCcc
Confidence            999988764

>PLN03106 TCP2 Protein TCP2; Provisional

Probab=99.94  E-value=5e-27  Score=221.64  Aligned_cols=72  Identities=32%  Similarity=0.523  Sum_probs=66.4

Q ss_pred             CCCCCccccCC-CCCCCCccccc----CCCceeecCHHHHHHhhhhhhhhCCCCCchHHHHHHHhchHHHHHhhCCC
Q 024547           24 PPGNGALTVKK-PPSKDRHSKVD----GRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTG   95 (266)
Q Consensus        24 ~~~~~~~~~kk-~~~KDRHSKV~----~RDRRvRLs~~~A~rfF~LQDeLGfdkaSkTIEWLL~qak~AI~~atgtg   95 (266)
                      +.++++++++| .++|||||||+    +||||||||++||++||+|||||||||+||||||||++||+||+||+...
T Consensus        60 ~~~~ri~rvsRasg~KDRHSKI~Ta~G~RDRRvRLS~~~ArkFFdLQD~LGfDkaSKTvEWLL~~Sk~AI~EL~~l~  136 (447)
T PLN03106         60 HHSSRIIRVSRASGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSLN  136 (447)
T ss_pred             ccCCceeeeecccCCCCcccceecccCCcccceeccHHHHHHHHhHHHHhCCCCcchHHHHHHHHhHHHHHHhhccc
Confidence            34678888854 66999999999    99999999999999999999999999999999999999999999998755

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00