Citrus Sinensis ID: 024565

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK
Secondary Structure (PSIPRED)
cccEEEEEEccccHHHHHHHHHHccccEEEEEEcccccccccEEEEcccccccccccccEEEEEcccEEEEccEEEEEEEEccccccccccccccEEEEcccccccHHHHHHHHcccccEEEEccccccccEEEEEEccccccccccEEEEcccccccccHHHcEEccccccccccHHHHHHHccccccccccccccccccccccccccccccHHHHHHccccccccccccEEEEEccccccEEEEEEEEccccccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHcccccccccccEEEEcEccEEEEccEEEEEEccccHHHccHHHHcccEEEEcccccccHHHHHHHHcccccEEEEccccccccEccccccHHHccccccEEEcccHHHHHHHHHHHHHHHHHcEEEEEEEEEEccccccEccccccccccHHHcEcccccEEEcccHHHHHHHHcHHHcccEEEEEEEccccccEEEEEEEEEcccccHHHHHHHHH
Coil and Loop (DISEMBL)
mgkvkigingFGRIGRLVARVILqrddvelvavndpfittdYMTYMFKYdsvhgqwkhhelkvkddktllfgekpvtvfgvrnpeeipwaetgAEYVVestgvftdkDKAAAHLKGGAKKVIisapskdapmfvvgvneheykpelnivsnascttnclaPLAKVIHDKFGIVEGLMTTVHSITatqktvdgpsskdwrggraasfniipsstgaaKAVGKvlpalngkltgmafrvptvdvSVVDLTVRLEKDASYDEIKAAIK
Flexible Loop (DISEMBL)
mgkvkigingfgrigRLVARVilqrddvelvavndpFITTDYMTYMFKYDSVHGQWKHHElkvkddktllfgekpvtvfgvrnpeeipwaeTGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSItatqktvdgpsskdwrgGRAASFniipsstgaaKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTvrlekdasydeikaaik
Low Complexity Region (SEG)
MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTdkdkaaahlkggakkVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK
Disordered region (IsUnstruct)
***VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ*************GRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEK************
Disordered Region (DISOPRED)
*GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK
Disordered Region (DISEMBL)
MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ************GGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK
Disordered Region (DISPRO)
*GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
P34783	360	Glyceraldehyde-3-phosphat	N/A	no	1.0	0.736	0.932	1e-145
P26518	341	Glyceraldehyde-3-phosphat	N/A	no	0.992	0.771	0.946	1e-144
P26520	337	Glyceraldehyde-3-phosphat	N/A	no	1.0	0.786	0.916	1e-143
Q9FX54	338	Glyceraldehyde-3-phosphat	yes	no	0.992	0.778	0.916	1e-142
Q7FAH2	337	Glyceraldehyde-3-phosphat	yes	no	1.0	0.786	0.920	1e-142
P25858	338	Glyceraldehyde-3-phosphat	yes	no	0.992	0.778	0.916	1e-142
P04796	338	Glyceraldehyde-3-phosphat	N/A	no	0.992	0.778	0.916	1e-142
P34921	338	Glyceraldehyde-3-phosphat	N/A	no	1.0	0.784	0.901	1e-140
Q43247	337	Glyceraldehyde-3-phosphat	N/A	no	1.0	0.786	0.894	1e-140
Q42671	337	Glyceraldehyde-3-phosphat	N/A	no	1.0	0.786	0.905	1e-139

>sp|P34783|G3P_ATRNU Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1

 Score =  514 bits (1325), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/265 (93%), Positives = 259/265 (97%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           M KVKIGINGFGRIGRLVARVILQ DD ELVA+NDPFITTDYMTYMFKYDSVHGQWKHHE
Sbjct: 1   MAKVKIGINGFGRIGRLVARVILQSDDCELVAINDPFITTDYMTYMFKYDSVHGQWKHHE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           LKVKD+KTLLFGE+PVTVFG RNPEEIPW +TGA+YVVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 61  LKVKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVESTGVFTDKDKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           VIISAPSKDAPMFVVGVNEHEYK ELNIVSNASCTTNCLAPLAKVI+DKFGIVEGLMTTV
Sbjct: 121 VIISAPSKDAPMFVVGVNEHEYKSELNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HSITATQKTVDGPS+KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPTV
Sbjct: 181 HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVRLEK+A+Y++IKAAIK
Sbjct: 241 DVSVVDLTVRLEKEATYEQIKAAIK 265

Atriplex nummularia (taxid: 3553)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 2

>sp|P26518|G3PC_MAGLI Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1

 Score =  511 bits (1316), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/263 (94%), Positives = 255/263 (96%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           K+KIGINGFGRIGRLVARV LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK
Sbjct: 5   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 64

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
           VKD KTLLFGEKPVTVFGVRNPEEIPW ETGAE+VVESTGVFTDKDKAAAHLKGGAKKVI
Sbjct: 65  VKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVI 124

Query: 123 ISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           ISAPSKDAPMFVVGVNEHEYK  ++IVSNASCTTNCLAPLAKVI+DKFGIVEGLMTTVHS
Sbjct: 125 ISAPSKDAPMFVVGVNEHEYKSNIDIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHS 184

Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
           ITATQKTVDGPSSKDWRGGRAA FNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV
Sbjct: 185 ITATQKTVDGPSSKDWRGGRAAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 244

Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
           SVVDLTVRLEK ASY+EIKA IK
Sbjct: 245 SVVDLTVRLEKAASYEEIKAVIK 267

Magnolia liliiflora (taxid: 3403)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P26520|G3PC_PETHY Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1

 Score =  508 bits (1307), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/265 (91%), Positives = 256/265 (96%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           M K+KIGINGFGRIGRLVARV LQRDDVELVAVNDPFI+ +YMTYMFKYDSVHGQWKHHE
Sbjct: 1   MAKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVEYMTYMFKYDSVHGQWKHHE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           LK KDDKTLLFGEKPVTVFG+RNPEEIPW E GA+YVVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 61  LKAKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           VIISAPSKDAPMFVVGVNE EYK +L +VSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 121 VIISAPSKDAPMFVVGVNEKEYKSDLTVVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HS+TATQKTVDGPS+KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV
Sbjct: 181 HSMTATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVRLEK+A+YDEIKAAIK
Sbjct: 241 DVSVVDLTVRLEKEATYDEIKAAIK 265

Petunia hybrida (taxid: 4102)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9FX54|G3PC2_ARATH Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic OS=Arabidopsis thaliana GN=GAPC2 PE=1 SV=1

 Score =  505 bits (1301), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/263 (91%), Positives = 257/263 (97%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           K++IGINGFGRIGRLVARV+LQRDDVELVAVNDPFITT+YMTYMFKYDSVHGQWKHHELK
Sbjct: 5   KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELK 64

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
           VKDDKTLLFGEKPVTVFG+RNPE+IPW E GA++VVESTGVFTDKDKAAAHLKGGAKKV+
Sbjct: 65  VKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVV 124

Query: 123 ISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           ISAPSKDAPMFVVGVNEHEYK +L+IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHS
Sbjct: 125 ISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 184

Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGM+FRVPTVDV
Sbjct: 185 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDV 244

Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
           SVVDLTVRLEK A+YDEIK AIK
Sbjct: 245 SVVDLTVRLEKAATYDEIKKAIK 267

Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism (By similarity). Binds DNA in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q7FAH2|G3PC2_ORYSJ Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC2 PE=1 SV=1

 Score =  505 bits (1300), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/265 (92%), Positives = 256/265 (96%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           M K+KIGINGFGRIGRLVARV LQ DDVELVAVNDPFITTDYMTYMFKYD+VHGQWKHHE
Sbjct: 1   MAKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHHE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           +KVKD KTLLFGEK VTVFG RNPEEIPW ETGAE+VVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 61  VKVKDSKTLLFGEKEVTVFGCRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           V+ISAPSKDAPMFVVGVNE EYKP+++IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 121 VVISAPSKDAPMFVVGVNEKEYKPDIDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           H+ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV
Sbjct: 181 HAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVRLEK ASYD+IKAAIK
Sbjct: 241 DVSVVDLTVRLEKPASYDQIKAAIK 265

Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P25858|G3PC1_ARATH Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic OS=Arabidopsis thaliana GN=GAPC1 PE=1 SV=2

 Score =  505 bits (1300), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/263 (91%), Positives = 258/263 (98%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           K++IGINGFGRIGRLVARV+LQRDDVELVAVNDPFITT+YMTYMFKYDSVHGQWKH+ELK
Sbjct: 5   KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELK 64

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
           +KD+KTLLFGEKPVTVFG+RNPE+IPWAE GA+YVVESTGVFTDKDKAAAHLKGGAKKV+
Sbjct: 65  IKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKKVV 124

Query: 123 ISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           ISAPSKDAPMFVVGVNEHEYK +L+IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHS
Sbjct: 125 ISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 184

Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPTVDV
Sbjct: 185 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 244

Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
           SVVDLTVRLEK A+YDEIK AIK
Sbjct: 245 SVVDLTVRLEKAATYDEIKKAIK 267

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P04796|G3PC_SINAL Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2

 Score =  503 bits (1294), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/263 (91%), Positives = 256/263 (97%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           K+KIGINGFGRIGRLVARVILQR+DVELVAVNDPFITT+YMTYMFKYDSVHGQWKH+ELK
Sbjct: 5   KIKIGINGFGRIGRLVARVILQRNDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELK 64

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
           VKD+KTLLFGEKPVTVFG+RNPE+IPW E GA++VVESTGVFTDKDKAAAHLKGGAKKV+
Sbjct: 65  VKDEKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVV 124

Query: 123 ISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           ISAPSKDAPMFVVGVNEHEYK +LNIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHS
Sbjct: 125 ISAPSKDAPMFVVGVNEHEYKSDLNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 184

Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPTVDV
Sbjct: 185 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTVDV 244

Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
           SVVDLTVRLEK A+YDEIK AIK
Sbjct: 245 SVVDLTVRLEKAATYDEIKKAIK 267

Sinapis alba (taxid: 3728)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P34921|G3PC_DIACA Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1

 Score =  497 bits (1280), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/265 (90%), Positives = 256/265 (96%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           M  +KIGINGFGRIGRLVARVILQR+D ELVAVNDPFITT+YMTYMFKYDSVHGQWKHH+
Sbjct: 1   MAPIKIGINGFGRIGRLVARVILQREDCELVAVNDPFITTEYMTYMFKYDSVHGQWKHHD 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           +KVKD+KTLLFGEK VTVFG RNPEEIPW  TGA+YVVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 61  IKVKDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVESTGVFTDKDKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           VIISAPSKDAPMFVVGVNEHEYKPEL+IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 121 VIISAPSKDAPMFVVGVNEHEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HSITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGM+FRVPTV
Sbjct: 181 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVR+EK A+Y+++KAAIK
Sbjct: 241 DVSVVDLTVRIEKPATYEQVKAAIK 265

Dianthus caryophyllus (taxid: 3570)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q43247|G3PC3_MAIZE Glyceraldehyde-3-phosphate dehydrogenase 3, cytosolic OS=Zea mays GN=GAPC3 PE=2 SV=1

 Score =  496 bits (1276), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/265 (89%), Positives = 251/265 (94%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           M K+KIGINGFGRIGRLVARV LQ DDVELVAVNDPFI+TDYMTYMFKYD+VHGQWKHHE
Sbjct: 1   MAKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFISTDYMTYMFKYDTVHGQWKHHE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           +KVKD KTLLFGEK V VFG RNPEEIPW   GAEYVVESTGVFTD++KAAAHLKGGAKK
Sbjct: 61  VKVKDSKTLLFGEKEVAVFGCRNPEEIPWGSVGAEYVVESTGVFTDQEKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           V+ISAPSKDAPMFVVGVNE EYK ++NIVSNASCTTNCLAPLAKVI+DKFGIVEGLMTTV
Sbjct: 121 VVISAPSKDAPMFVVGVNEKEYKSDINIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           H+ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPTV
Sbjct: 181 HAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPVLNGKLTGMSFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVRLEK A+YDEIKAA+K
Sbjct: 241 DVSVVDLTVRLEKSATYDEIKAAVK 265

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q42671|G3PC_CRAPL Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1

 Score =  495 bits (1275), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/265 (90%), Positives = 253/265 (95%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           M KVKIGINGFGRIGRLVARV L RDDVELVAVNDPFIT DYM YMFKYD+VHGQ+KHHE
Sbjct: 1   MAKVKIGINGFGRIGRLVARVALVRDDVELVAVNDPFITVDYMAYMFKYDTVHGQYKHHE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           LKVKD+KTLLFG+KPV VFG+RNPEEIPWAETGAEYVVESTGVFT+K+KAAAHLKGGAKK
Sbjct: 61  LKVKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           VIISAPSKDAPMFVVGVNE  Y P++++VSNASCTTNCLAPLAKVIHD+FGIVEGLMTTV
Sbjct: 121 VIISAPSKDAPMFVVGVNEKTYTPDIDVVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPTV
Sbjct: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTV L K+ASYDEIKAAIK
Sbjct: 241 DVSVVDLTVTLAKEASYDEIKAAIK 265

Craterostigma plantagineum (taxid: 4153)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
211906518	336	glyceraldehyde-3-phosphate dehydrogenase	1.0	0.788	0.947	1e-144
418731090	337	glyceraldehyde 3-phosphate dehydrogenase	1.0	0.786	0.939	1e-144
211906470	340	glyceraldehyde-3-phosphate dehydrogenase	1.0	0.779	0.939	1e-144
462141	360	RecName: Full=Glyceraldehyde-3-phosphate	1.0	0.736	0.932	1e-143
257815169	337	NAD-dependent glyceraldehyde 3-P dehydro	1.0	0.786	0.920	1e-143
4539543	337	glyceraldehyde-3-phosphate dehydrogenase	1.0	0.786	0.935	1e-143
224119602	338	predicted protein [Populus trichocarpa]	1.0	0.784	0.932	1e-143
386278568	277	glyceraldehyde-3-phosphate dehydrogenase	1.0	0.956	0.935	1e-143
125662890	337	glyceraldehyde-3-phosphate dehydogenase	1.0	0.786	0.928	1e-143
359491599	337	PREDICTED: glyceraldehyde-3-phosphate de	1.0	0.786	0.928	1e-143

>gi|211906518|gb|ACJ11752.1| glyceraldehyde-3-phosphate dehydrogenase C subunit [Gossypium hirsutum]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/265 (94%), Positives = 258/265 (97%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           MGK+KIGINGFGRIGRLVARV LQ DD+ELVAVNDPFITT+YMTYMFKYDSVHGQWKHHE
Sbjct: 1   MGKIKIGINGFGRIGRLVARVALQSDDIELVAVNDPFITTEYMTYMFKYDSVHGQWKHHE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           LKVKD KTLLFGEKPVTVFG+RNPEEIPWAE GAEYVVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 61  LKVKDSKTLLFGEKPVTVFGIRNPEEIPWAEAGAEYVVESTGVFTDKDKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           VIISAPSKDAPMFVVGVNE EYKP+LNIVSNASCTTNCLAPLAKVI+DKFGIVEGLMTTV
Sbjct: 121 VIISAPSKDAPMFVVGVNEKEYKPDLNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HSITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV
Sbjct: 181 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVRLEK A+YDEIKAAIK
Sbjct: 241 DVSVVDLTVRLEKKATYDEIKAAIK 265

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731090|gb|AFX67011.1| glyceraldehyde 3-phosphate dehydrogenase [Solanum tuberosum]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/265 (93%), Positives = 259/265 (97%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           M KVKIGINGFGRIGRLVARV LQRDDVELVAVNDPFI+ DYMTYMFKYDSVHGQWKHHE
Sbjct: 1   MAKVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVDYMTYMFKYDSVHGQWKHHE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           LKVKD+KTLLFGEK VTVFG RNPEEIPWA+TGA+Y+VESTGVFTDKDKAAAHLKGGAKK
Sbjct: 61  LKVKDEKTLLFGEKAVTVFGFRNPEEIPWAQTGADYIVESTGVFTDKDKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           VIISAPSKDAPMFVVGVNE EYKPELNIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 121 VIISAPSKDAPMFVVGVNEKEYKPELNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HSITATQKTVDGPS+KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV
Sbjct: 181 HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVRLEK+A+YDEIKAAIK
Sbjct: 241 DVSVVDLTVRLEKEATYDEIKAAIK 265

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|211906470|gb|ACJ11728.1| glyceraldehyde-3-phosphate dehydrogenase [Gossypium hirsutum]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/265 (93%), Positives = 257/265 (96%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           M KVKIGINGFGRIGRLVARV L+RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE
Sbjct: 1   MAKVKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           LKVKD KTLLFGEKPVTVFG+RNPEEIPW ETGAEY+VESTGVFTDKDKAAAHLKGGAKK
Sbjct: 61  LKVKDSKTLLFGEKPVTVFGIRNPEEIPWGETGAEYIVESTGVFTDKDKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           VIISAPSKDAPMFV+GVNE +YKPE +I+SNASCTTNCLAPLAKVIHDKFGI+EGLMTTV
Sbjct: 121 VIISAPSKDAPMFVMGVNEKDYKPEYDIISNASCTTNCLAPLAKVIHDKFGIIEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HSITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV
Sbjct: 181 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVRLEK ASYDEIKAAIK
Sbjct: 241 DVSVVDLTVRLEKAASYDEIKAAIK 265

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|462141|sp|P34783.1|G3P_ATRNU RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase; Short=GAPDH gi|409575|gb|AAA03442.1| glyceraldehyde-3-phosphate dehydrogenase [Atriplex nummularia] gi|414607|emb|CAA53269.1| glyceraldehyde-3-phosphate dehydrogenase [Atriplex nummularia]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/265 (93%), Positives = 259/265 (97%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           M KVKIGINGFGRIGRLVARVILQ DD ELVA+NDPFITTDYMTYMFKYDSVHGQWKHHE
Sbjct: 1   MAKVKIGINGFGRIGRLVARVILQSDDCELVAINDPFITTDYMTYMFKYDSVHGQWKHHE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           LKVKD+KTLLFGE+PVTVFG RNPEEIPW +TGA+YVVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 61  LKVKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVESTGVFTDKDKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           VIISAPSKDAPMFVVGVNEHEYK ELNIVSNASCTTNCLAPLAKVI+DKFGIVEGLMTTV
Sbjct: 121 VIISAPSKDAPMFVVGVNEHEYKSELNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HSITATQKTVDGPS+KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPTV
Sbjct: 181 HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVRLEK+A+Y++IKAAIK
Sbjct: 241 DVSVVDLTVRLEKEATYEQIKAAIK 265

Source: Atriplex nummularia

Species: Atriplex nummularia

Genus: Atriplex

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257815169|gb|ACV69976.1| NAD-dependent glyceraldehyde 3-P dehydrogenase [Solanum chacoense]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/265 (92%), Positives = 261/265 (98%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           MGK+KIGINGFGRIGRLVARV LQRDDVELVAVNDPFIT +YMTYMFKYDSVHGQWK++E
Sbjct: 1   MGKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITVEYMTYMFKYDSVHGQWKNNE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           L+VKD+KTLLFGEKPVTVFG+RNPEEIPWAE GAEY+VESTGVFTDKDKAAAHLKGGAKK
Sbjct: 61  LRVKDEKTLLFGEKPVTVFGIRNPEEIPWAEAGAEYIVESTGVFTDKDKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           V+ISAPSKDAPMFVVGVNE EYKP+LN+VSNASCTTNCLAPLAKVIHD+FGIVEGLMTTV
Sbjct: 121 VVISAPSKDAPMFVVGVNEKEYKPDLNVVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HSITATQKTVDGPS+KDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGM+FRVPTV
Sbjct: 181 HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVRLEK+A+YDEIKAAIK
Sbjct: 241 DVSVVDLTVRLEKEATYDEIKAAIK 265

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4539543|emb|CAB39974.1| glyceraldehyde-3-phosphate dehydrogenase [Nicotiana tabacum]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/265 (93%), Positives = 258/265 (97%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           M KVKIGINGFGRIGRLVARV LQRDDVELVAVNDPFI+ +YMTYMFKYDSVHGQWKHHE
Sbjct: 1   MAKVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVEYMTYMFKYDSVHGQWKHHE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           LKVKDDKTLLFGEK VTVFG RNPEEIPW +TGA+Y+VESTGVFTDKDKAAAHLKGGAKK
Sbjct: 61  LKVKDDKTLLFGEKAVTVFGFRNPEEIPWGQTGADYIVESTGVFTDKDKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           VIISAPSKDAPMFVVGVNE EYKPELNIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 121 VIISAPSKDAPMFVVGVNEKEYKPELNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HSITATQKTVDGPS+KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV
Sbjct: 181 HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVRLEK+A+YDEIKAAIK
Sbjct: 241 DVSVVDLTVRLEKEATYDEIKAAIK 265

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119602|ref|XP_002318114.1| predicted protein [Populus trichocarpa] gi|118482565|gb|ABK93203.1| unknown [Populus trichocarpa] gi|222858787|gb|EEE96334.1| predicted protein [Populus trichocarpa]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/265 (93%), Positives = 257/265 (96%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           MGK+KIGINGFGRIGRLVARV LQRDDVELVAVNDPFITTDYMTYMFKYD+VHGQWKHHE
Sbjct: 1   MGKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHHE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           LKVKD KTLLFGEK VTVFGVRNPEEIPW ETGA+Y+VESTGVFTDKDKAAAHLKGGAKK
Sbjct: 61  LKVKDSKTLLFGEKSVTVFGVRNPEEIPWGETGADYIVESTGVFTDKDKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           VIISAPSKDAPMFV+GVNE  Y P+LNIVSNASCTTNCLAPLAKVIHD+FGI+EGLMTTV
Sbjct: 121 VIISAPSKDAPMFVMGVNEKSYTPDLNIVSNASCTTNCLAPLAKVIHDRFGIIEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV
Sbjct: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVRLEK ASY++IKAAIK
Sbjct: 241 DVSVVDLTVRLEKGASYEDIKAAIK 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|386278568|gb|AFJ04516.1| glyceraldehyde-3-phosphate dehydrogenase, partial [Vernicia fordii]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/265 (93%), Positives = 259/265 (97%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           MGKVKIGINGFGRIGRLVARV LQRDDVELVAVNDPFI+ +YMTYMFKYD+VHGQWKHHE
Sbjct: 1   MGKVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVEYMTYMFKYDTVHGQWKHHE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           VIISAPSKDAPMFVVGVNE EYKP+++IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 121 VIISAPSKDAPMFVVGVNEKEYKPDIHIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HSITATQKTVDGP+ KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV
Sbjct: 181 HSITATQKTVDGPAMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVRL K ASY++IKAAIK
Sbjct: 241 DVSVVDLTVRLSKGASYEQIKAAIK 265

Source: Vernicia fordii

Species: Vernicia fordii

Genus: Vernicia

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125662890|gb|ABN50381.1| glyceraldehyde-3-phosphate dehydogenase [Beta vulgaris]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/265 (92%), Positives = 261/265 (98%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           M K+KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE
Sbjct: 1   MAKIKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           LKVKD+KTLLFGEKPV+VFG RNPEEIPW++TGA++VVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 61  LKVKDEKTLLFGEKPVSVFGCRNPEEIPWSQTGADFVVESTGVFTDKDKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           V+ISAPSKDAPMFVVGVNEHEYK +L+IVSNASCTTNCLAPLAKVI+DKFGIVEGLMTTV
Sbjct: 121 VVISAPSKDAPMFVVGVNEHEYKSDLHIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HSITATQKTVDGPS+KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV
Sbjct: 181 HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVRLEK A+Y++IKAAIK
Sbjct: 241 DVSVVDLTVRLEKAATYEDIKAAIK 265

Source: Beta vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491599|ref|XP_002263145.2| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase, cytosolic [Vitis vinifera]

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/265 (92%), Positives = 258/265 (97%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           MGK+KIGINGFGRIGRLVARV LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE
Sbjct: 1   MGKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           LKVKD  TLLFGEKPVTVFG+RNPEEIPW ETGAE+VVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 61  LKVKDSNTLLFGEKPVTVFGIRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           V+ISAPSKDAPMFVVGVNE EYKPEL+IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 121 VVISAPSKDAPMFVVGVNEKEYKPELHIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HSITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGMAFRVPTV
Sbjct: 181 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMAFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVRLEK A+Y+++KAAIK
Sbjct: 241 DVSVVDLTVRLEKAATYEQVKAAIK 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2010007	338	GAPC2 "glyceraldehyde-3-phosph	0.992	0.778	0.859	3.2e-120
TAIR|locus:2103085	338	GAPC1 "glyceraldehyde-3-phosph	0.992	0.778	0.859	4.1e-120
TAIR|locus:2206435	422	GAPCP-1 "glyceraldehyde-3-phos	0.992	0.623	0.708	2.2e-96
TAIR|locus:2032810	420	GAPCP-2 "glyceraldehyde-3-phos	0.992	0.626	0.715	3.7e-96
CGD|CAL0005657	335	TDH3 [Candida albicans (taxid:	0.981	0.776	0.690	1.3e-91
UNIPROTKB|Q5ADM7	335	TDH3 "Glyceraldehyde-3-phospha	0.981	0.776	0.690	1.3e-91
UNIPROTKB|Q5RAB4	335	GAPDH "Glyceraldehyde-3-phosph	0.992	0.785	0.664	1.7e-89
UNIPROTKB|P04406	335	GAPDH "Glyceraldehyde-3-phosph	0.992	0.785	0.656	2.2e-89
UNIPROTKB|Q9N2D5	333	GAPDH "Glyceraldehyde-3-phosph	0.981	0.780	0.660	5.3e-88
RGD|2661	333	Gapdh "glyceraldehyde-3-phosph	0.981	0.780	0.660	5.3e-88

TAIR|locus:2010007 GAPC2 "glyceraldehyde-3-phosphate dehydrogenase C2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
 Identities = 226/263 (85%), Positives = 242/263 (92%)

Query:     3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
             K++IGINGFGRIGRLVARV+LQRDDVELVAVNDPFITT+YMTYMFKYDSVHGQWKHHELK
Sbjct:     5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELK 64

Query:    63 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVI 122
             VKDDKTLLFGEKPVTVFG+RNPE+IPW E GA++VVESTGVFT               V+
Sbjct:    65 VKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVV 124

Query:   123 ISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
             ISAPSKDAPMFVVGVNEHEYK +L+IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHS
Sbjct:   125 ISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 184

Query:   183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
             ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGM+FRVPTVDV
Sbjct:   185 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDV 244

Query:   243 SVVDLTVRLEKDASYDEIKAAIK 265
             SVVDLTVRLEK A+YDEIK AIK
Sbjct:   245 SVVDLTVRLEKAATYDEIKKAIK 267

GO:0005737 "cytoplasm" evidence=ISM

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS;RCA;TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0006094 "gluconeogenesis" evidence=RCA;TAS

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0051049 "regulation of transport" evidence=RCA

TAIR|locus:2103085 GAPC1 "glyceraldehyde-3-phosphate dehydrogenase C subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 226/263 (85%), Positives = 243/263 (92%)

Query:     3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
             K++IGINGFGRIGRLVARV+LQRDDVELVAVNDPFITT+YMTYMFKYDSVHGQWKH+ELK
Sbjct:     5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELK 64

Query:    63 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVI 122
             +KD+KTLLFGEKPVTVFG+RNPE+IPWAE GA+YVVESTGVFT               V+
Sbjct:    65 IKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKKVV 124

Query:   123 ISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
             ISAPSKDAPMFVVGVNEHEYK +L+IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHS
Sbjct:   125 ISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 184

Query:   183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
             ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPTVDV
Sbjct:   185 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 244

Query:   243 SVVDLTVRLEKDASYDEIKAAIK 265
             SVVDLTVRLEK A+YDEIK AIK
Sbjct:   245 SVVDLTVRLEKAATYDEIKKAIK 267

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS;RCA;IDA;TAS

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP;IDA

GO:0005740 "mitochondrial envelope" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0006094 "gluconeogenesis" evidence=RCA;TAS

GO:0042542 "response to hydrogen peroxide" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0008886 "glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity" evidence=IDA

GO:0010154 "fruit development" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0005507 "copper ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=TAS

GO:0009408 "response to heat" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP

TAIR|locus:2206435 GAPCP-1 "glyceraldehyde-3-phosphate dehydrogenase of plastid 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
 Identities = 187/264 (70%), Positives = 209/264 (79%)

Query:     2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
             GK K+GINGFGRIGRLV R+   RDD+E+VAVNDPFI   YM YM KYDS HG +K   +
Sbjct:    85 GKTKVGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMLKYDSTHGNFKG-SI 143

Query:    62 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 121
              V DD TL    K V V   R+P EIPWA+ GA+YVVES+GVFT               V
Sbjct:   144 NVIDDSTLEINGKKVNVVSKRDPSEIPWADLGADYVVESSGVFTTLSKAASHLKGGAKKV 203

Query:   122 IISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
             IISAPS DAPMFVVGVNEH Y+P ++IVSNASCTTNCLAPLAKV+H++FGI+EGLMTTVH
Sbjct:   204 IISAPSADAPMFVVGVNEHTYQPNMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVH 263

Query:   182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
             + TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +
Sbjct:   264 ATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTSN 323

Query:   242 VSVVDLTVRLEKDASYDEIKAAIK 265
             VSVVDLT RLEK ASY+++KAAIK
Sbjct:   324 VSVVDLTCRLEKGASYEDVKAAIK 347

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009536 "plastid" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IMP

GO:0005975 "carbohydrate metabolic process" evidence=IMP

GO:0080022 "primary root development" evidence=IMP

GO:0080144 "amino acid homeostasis" evidence=IMP

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0048658 "tapetal layer development" evidence=IMP

TAIR|locus:2032810 GAPCP-2 "glyceraldehyde-3-phosphate dehydrogenase of plastid 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 189/264 (71%), Positives = 209/264 (79%)

Query:     2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
             GK K+GINGFGRIGRLV R+   RDD+E+VAVNDPFI   YM YMFKYDS HG +K   +
Sbjct:    83 GKTKVGINGFGRIGRLVLRIATFRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNYKG-TI 141

Query:    62 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 121
              V DD TL    K V V   R+P EIPWA+ GAEYVVES+GVFT               V
Sbjct:   142 NVIDDSTLEINGKQVKVVSKRDPAEIPWADLGAEYVVESSGVFTTVGQASSHLKGGAKKV 201

Query:   122 IISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
             IISAPS DAPMFVVGVNE  Y P ++IVSNASCTTNCLAPLAKV+H++FGI+EGLMTTVH
Sbjct:   202 IISAPSADAPMFVVGVNEKTYLPNMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVH 261

Query:   182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
             + TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +
Sbjct:   262 ATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN 321

Query:   242 VSVVDLTVRLEKDASYDEIKAAIK 265
             VSVVDLT RLEKDASY+++KAAIK
Sbjct:   322 VSVVDLTCRLEKDASYEDVKAAIK 345

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009536 "plastid" evidence=ISS;IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IMP

GO:0005975 "carbohydrate metabolic process" evidence=IMP

GO:0080022 "primary root development" evidence=IMP

GO:0080144 "amino acid homeostasis" evidence=IMP

CGD|CAL0005657 TDH3 [Candida albicans (taxid:5476)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 181/262 (69%), Positives = 205/262 (78%)

Query:     4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
             +KIGINGFGRIGRLV RV L R D+E+VAVNDPFI  DY  YMFKYDS HG++K  E+  
Sbjct:     3 IKIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFIAPDYAAYMFKYDSTHGRYKG-EVTA 61

Query:    64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
               D  ++ G K + VF  R+P  IPW ++G +YV+ESTGVFT               VII
Sbjct:    62 SGDDLVIDGHK-IKVFQERDPANIPWGKSGVDYVIESTGVFTKLEGAQKHIDAGAKKVII 120

Query:   124 SAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
             +APS DAPMFVVGVNE +Y P+L I+SNASCTTNCLAPLAKV++D FGI EGLMTTVHSI
Sbjct:   121 TAPSADAPMFVVGVNEDKYTPDLKIISNASCTTNCLAPLAKVVNDTFGIEEGLMTTVHSI 180

Query:   184 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 243
             TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKV+P LNGKLTGM+ RVPT DVS
Sbjct:   181 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVIPELNGKLTGMSLRVPTTDVS 240

Query:   244 VVDLTVRLEKDASYDEIKAAIK 265
             VVDLTVRL+K ASY+EI  AIK
Sbjct:   241 VVDLTVRLKKAASYEEIAQAIK 262

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0030445 "yeast-form cell wall" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IDA

GO:0006096 "glycolysis" evidence=TAS

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051701 "interaction with host" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0043236 "laminin binding" evidence=IMP;IDA

GO:0050840 "extracellular matrix binding" evidence=IMP;IDA

GO:0044406 "adhesion to host" evidence=IMP

GO:0007160 "cell-matrix adhesion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0001968 "fibronectin binding" evidence=IDA

GO:0005811 "lipid particle" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044416 "induction by symbiont of host defense response" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|Q5ADM7 TDH3 "Glyceraldehyde-3-phosphate dehydrogenase" [Candida albicans SC5314 (taxid:237561)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 181/262 (69%), Positives = 205/262 (78%)

Query:     4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
             +KIGINGFGRIGRLV RV L R D+E+VAVNDPFI  DY  YMFKYDS HG++K  E+  
Sbjct:     3 IKIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFIAPDYAAYMFKYDSTHGRYKG-EVTA 61

Query:    64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
               D  ++ G K + VF  R+P  IPW ++G +YV+ESTGVFT               VII
Sbjct:    62 SGDDLVIDGHK-IKVFQERDPANIPWGKSGVDYVIESTGVFTKLEGAQKHIDAGAKKVII 120

Query:   124 SAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
             +APS DAPMFVVGVNE +Y P+L I+SNASCTTNCLAPLAKV++D FGI EGLMTTVHSI
Sbjct:   121 TAPSADAPMFVVGVNEDKYTPDLKIISNASCTTNCLAPLAKVVNDTFGIEEGLMTTVHSI 180

Query:   184 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 243
             TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKV+P LNGKLTGM+ RVPT DVS
Sbjct:   181 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVIPELNGKLTGMSLRVPTTDVS 240

Query:   244 VVDLTVRLEKDASYDEIKAAIK 265
             VVDLTVRL+K ASY+EI  AIK
Sbjct:   241 VVDLTVRLKKAASYEEIAQAIK 262

GO:0001968 "fibronectin binding" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006096 "glycolysis" evidence=TAS

GO:0007160 "cell-matrix adhesion" evidence=IDA

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0030445 "yeast-form cell wall" evidence=IDA

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0043236 "laminin binding" evidence=IDA

GO:0044406 "adhesion to host" evidence=IMP

GO:0044416 "induction by symbiont of host defense response" evidence=IDA

GO:0050840 "extracellular matrix binding" evidence=IDA

GO:0051701 "interaction with host" evidence=IPI

UNIPROTKB|Q5RAB4 GAPDH "Glyceraldehyde-3-phosphate dehydrogenase" [Pongo abelii (taxid:9601)]

 Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
 Identities = 176/265 (66%), Positives = 202/265 (76%)

Query:     1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
             MGKVK+GINGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  
Sbjct:     1 MGKVKVGINGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGT 59

Query:    61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
             +K ++ K ++ G  P+T+F  R+P +I W + GAEYVVESTGVFT               
Sbjct:    60 VKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 118

Query:   121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
             VIISAPS DAPMFV+GVN  +Y   L IVSNASCTTNCLAPLAKVIHD FGIVEGLMTTV
Sbjct:   119 VIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTV 178

Query:   181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
             H+ITATQKTVDGPS K WR GR A  NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT 
Sbjct:   179 HAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTA 238

Query:   241 DVSVVDLTVRLEKDASYDEIKAAIK 265
             +VSVVDLT RLEK A YD+IK  +K
Sbjct:   239 NVSVVDLTCRLEKAAKYDDIKKVVK 263

GO:0000226 "microtubule cytoskeleton organization" evidence=ISS

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0015630 "microtubule cytoskeleton" evidence=ISS

GO:0035605 "peptidyl-cysteine S-nitrosylase activity" evidence=ISS

GO:0035606 "peptidyl-cysteine S-trans-nitrosylation" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0051402 "neuron apoptotic process" evidence=ISS

UNIPROTKB|P04406 GAPDH "Glyceraldehyde-3-phosphate dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 174/265 (65%), Positives = 202/265 (76%)

Query:     1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
             MGKVK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  
Sbjct:     1 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGT 59

Query:    61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
             +K ++ K ++ G  P+T+F  R+P +I W + GAEYVVESTGVFT               
Sbjct:    60 VKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 118

Query:   121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
             VIISAPS DAPMFV+GVN  +Y   L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTV
Sbjct:   119 VIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTV 178

Query:   181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
             H+ITATQKTVDGPS K WR GR A  NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT 
Sbjct:   179 HAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTA 238

Query:   241 DVSVVDLTVRLEKDASYDEIKAAIK 265
             +VSVVDLT RLEK A YD+IK  +K
Sbjct:   239 NVSVVDLTCRLEKPAKYDDIKKVVK 263

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA;NAS;TAS

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISS;NAS

GO:0005737 "cytoplasm" evidence=ISS;IDA;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0035605 "peptidyl-cysteine S-nitrosylase activity" evidence=ISS

GO:0051402 "neuron apoptotic process" evidence=ISS

GO:0035606 "peptidyl-cysteine S-trans-nitrosylation" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0017148 "negative regulation of translation" evidence=IDA;IMP

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0071346 "cellular response to interferon-gamma" evidence=IDA

GO:0070062 "extracellular vesicular exosome" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=ISS

GO:0005811 "lipid particle" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0006094 "gluconeogenesis" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q9N2D5 GAPDH "Glyceraldehyde-3-phosphate dehydrogenase" [Felis catus (taxid:9685)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 173/262 (66%), Positives = 200/262 (76%)

Query:     4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
             VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K 
Sbjct:     2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKA 60

Query:    64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
             ++ K ++ G KP+T+F  R+P  I W + GAEYVVESTGVFT               VII
Sbjct:    61 ENGKLVING-KPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVII 119

Query:   124 SAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
             SAPS DAPMFV+GVN  +Y   L IVSNASCTTNCLAPLAKVIHD FGIVEGLMTTVH+I
Sbjct:   120 SAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAI 179

Query:   184 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 243
             TATQKTVDGPS K WR GR A+ NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT +VS
Sbjct:   180 TATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVS 239

Query:   244 VVDLTVRLEKDASYDEIKAAIK 265
             VVDLT RLEK A YD+IK  +K
Sbjct:   240 VVDLTCRLEKAAKYDDIKKVVK 261

GO:0000226 "microtubule cytoskeleton organization" evidence=ISS

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0015630 "microtubule cytoskeleton" evidence=ISS

GO:0035605 "peptidyl-cysteine S-nitrosylase activity" evidence=ISS

GO:0035606 "peptidyl-cysteine S-trans-nitrosylation" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0051402 "neuron apoptotic process" evidence=ISS

RGD|2661 Gapdh "glyceraldehyde-3-phosphate dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 173/262 (66%), Positives = 201/262 (76%)

Query:     4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
             VK+G+NGFGRIGRLV R     D V++VA+NDPFI  +YM YMF+YDS HG++ +  +K 
Sbjct:     2 VKVGVNGFGRIGRLVTRAAFSCDKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-NGTVKA 60

Query:    64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
             ++ K ++ G KP+T+F  R+P  I W + GAEYVVESTGVFT               VII
Sbjct:    61 ENGKLVING-KPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVII 119

Query:   124 SAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
             SAPS DAPMFV+GVN  +Y   L IVSNASCTTNCLAPLAKVIHD FGIVEGLMTTVH+I
Sbjct:   120 SAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAI 179

Query:   184 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 243
             TATQKTVDGPS K WR GR A+ NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT +VS
Sbjct:   180 TATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVS 239

Query:   244 VVDLTVRLEKDASYDEIKAAIK 265
             VVDLT RLEK A YD+IK  +K
Sbjct:   240 VVDLTCRLEKPAKYDDIKKVVK 261

GO:0000226 "microtubule cytoskeleton organization" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005811 "lipid particle" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005975 "carbohydrate metabolic process" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=IDA

GO:0006096 "glycolysis" evidence=IEA;IDA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=ISO

GO:0008017 "microtubule binding" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

GO:0017148 "negative regulation of translation" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0035605 "peptidyl-cysteine S-nitrosylase activity" evidence=IDA

GO:0035606 "peptidyl-cysteine S-trans-nitrosylation" evidence=IDA

GO:0050661 "NADP binding" evidence=IEA

GO:0050821 "protein stabilization" evidence=IDA

GO:0051287 "NAD binding" evidence=IEA

GO:0051402 "neuron apoptotic process" evidence=IMP;IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0060359 "response to ammonium ion" evidence=IDA

GO:0070062 "extracellular vesicular exosome" evidence=ISO

GO:0071346 "cellular response to interferon-gamma" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34923	G3PC_PHYPA	1, ., 2, ., 1, ., 1, 2	0.7946	0.9886	0.7660	N/A	no
Q7FAH2	G3PC2_ORYSJ	1, ., 2, ., 1, ., 1, 2	0.9207	1.0	0.7863	yes	no
P54270	G3PC_GRAGA	1, ., 2, ., 1, ., 1, 2	0.7126	0.9773	0.7731	N/A	no
Q42671	G3PC_CRAPL	1, ., 2, ., 1, ., 1, 2	0.9056	1.0	0.7863	N/A	no
P08477	G3PC2_HORVU	1, ., 2, ., 1, ., 1, 2	0.8884	0.8792	0.7639	N/A	no
P0CN74	G3P_CRYNJ	1, ., 2, ., 1, ., 1, 2	0.7251	0.9811	0.7669	yes	no
P0CN75	G3P_CRYNB	1, ., 2, ., 1, ., 1, 2	0.7251	0.9811	0.7669	N/A	no
P29497	G3P_COCHE	1, ., 2, ., 1, ., 1, 2	0.7022	0.9811	0.7715	N/A	no
P04796	G3PC_SINAL	1, ., 2, ., 1, ., 1, 2	0.9163	0.9924	0.7781	N/A	no
P04797	G3P_RAT	2, ., 6, ., 9, 9, ., -	0.6984	0.9811	0.7807	yes	no
A2YQT7	G3PC_ORYSI	1, ., 2, ., 1, ., 1, 2	0.8754	1.0	0.7863	N/A	no
P09317	G3P_USTMA	1, ., 2, ., 1, ., 1, 2	0.7018	0.9924	0.7804	N/A	no
Q00640	G3P_ERYGR	1, ., 2, ., 1, ., 1, 2	0.7094	0.9924	0.7781	N/A	no
P26518	G3PC_MAGLI	1, ., 2, ., 1, ., 1, 2	0.9467	0.9924	0.7712	N/A	no
P26519	G3PC_PETCR	1, ., 2, ., 1, ., 1, 2	0.8897	0.9924	0.7827	N/A	no
P04406	G3P_HUMAN	2, ., 6, ., 9, 9, ., -	0.6905	0.9924	0.7850	yes	no
P26517	G3PC1_HORVU	1, ., 2, ., 1, ., 1, 2	0.8867	1.0	0.7863	N/A	no
Q43247	G3PC3_MAIZE	1, ., 2, ., 1, ., 1, 2	0.8943	1.0	0.7863	N/A	no
P34783	G3P_ATRNU	1, ., 2, ., 1, ., 1, 2	0.9320	1.0	0.7361	N/A	no
P34924	G3PC_PINSY	1, ., 2, ., 1, ., 1, 2	0.8825	0.9962	0.7764	N/A	no
P34922	G3PC_PEA	1, ., 2, ., 1, ., 1, 2	0.9087	0.9924	0.7781	N/A	no
Q9FX54	G3PC2_ARATH	1, ., 2, ., 1, ., 1, 2	0.9163	0.9924	0.7781	yes	no
P34921	G3PC_DIACA	1, ., 2, ., 1, ., 1, 2	0.9018	1.0	0.7840	N/A	no
Q9UR38	G3P_LENED	1, ., 2, ., 1, ., 1, 2	0.7022	0.9811	0.7715	N/A	no
Q9P8C0	G3P_PHANO	1, ., 2, ., 1, ., 1, 2	0.7022	0.9811	0.7715	N/A	no
P25861	G3PC_ANTMA	1, ., 2, ., 1, ., 1, 2	0.9056	1.0	0.7863	N/A	no
P09094	G3PC_TOBAC	1, ., 2, ., 1, ., 1, 2	0.9212	0.9584	0.7791	N/A	no
Q8TFJ2	G3P_OMPOL	1, ., 2, ., 1, ., 1, 2	0.7328	0.9811	0.7715	N/A	no
Q09054	G3PC2_MAIZE	1, ., 2, ., 1, ., 1, 2	0.8830	1.0	0.7863	N/A	no
Q92211	G3P_CANAW	1, ., 2, ., 1, ., 1, 2	0.7137	0.9811	0.7761	N/A	no
Q6CCU7	G3P_YARLI	1, ., 2, ., 1, ., 1, 2	0.7175	0.9811	0.7692	yes	no
Q39769	G3PC_GINBI	1, ., 2, ., 1, ., 1, 2	0.9015	0.9962	0.7764	N/A	no
Q6K5G8	G3PC3_ORYSJ	1, ., 2, ., 1, ., 1, 2	0.9018	1.0	0.7863	no	no
Q41595	G3PC_TAXBA	1, ., 2, ., 1, ., 1, 2	0.8787	0.9962	0.7764	N/A	no
P26521	G3PC_RANAC	1, ., 2, ., 1, ., 1, 2	0.8939	0.9962	0.7810	N/A	no
P26520	G3PC_PETHY	1, ., 2, ., 1, ., 1, 2	0.9169	1.0	0.7863	N/A	no
P28844	G3P_COCLU	1, ., 2, ., 1, ., 1, 2	0.7022	0.9811	0.7715	N/A	no
Q6BMK0	G3P_DEBHA	1, ., 2, ., 1, ., 1, 2	0.7213	0.9811	0.7761	yes	no
P17878	G3PC_MESCR	1, ., 2, ., 1, ., 1, 2	0.8867	1.0	0.7863	N/A	no
Q5RAB4	G3P_PONAB	2, ., 6, ., 9, 9, ., -	0.6981	0.9924	0.7850	yes	no
Q9C136	G3P1_MUCCL	1, ., 2, ., 1, ., 1, 2	0.7061	0.9811	0.7715	N/A	no
Q96UF2	G3P2_MUCCL	1, ., 2, ., 1, ., 1, 2	0.7088	0.9773	0.7662	N/A	no
P08735	G3PC1_MAIZE	1, ., 2, ., 1, ., 1, 2	0.8754	1.0	0.7863	N/A	no
P25858	G3PC1_ARATH	1, ., 2, ., 1, ., 1, 2	0.9163	0.9924	0.7781	yes	no
P16858	G3P_MOUSE	2, ., 6, ., 9, 9, ., -	0.7022	0.9811	0.7807	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.2.1.12	0.979
4th Layer	1.2.1.59	LOW CONFIDENCE prediction!
3rd Layer	1.2.1	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
PLN02358	338	PLN02358, PLN02358, glyceraldehyde-3-phosphate deh	1e-175
PLN02272	421	PLN02272, PLN02272, glyceraldehyde-3-phosphate deh	1e-169
PTZ00023	337	PTZ00023, PTZ00023, glyceraldehyde-3-phosphate deh	1e-138
COG0057	335	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrog	1e-138
TIGR01534	326	TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate deh	1e-137
PRK15425	331	PRK15425, gapA, glyceraldehyde-3-phosphate dehydro	1e-107
PTZ00434	361	PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-pho	1e-105
PRK07729	343	PRK07729, PRK07729, glyceraldehyde-3-phosphate deh	4e-99
PRK07403	337	PRK07403, PRK07403, glyceraldehyde-3-phosphate deh	2e-88
PLN02237	442	PLN02237, PLN02237, glyceraldehyde-3-phosphate deh	1e-87
PLN03096	395	PLN03096, PLN03096, glyceraldehyde-3-phosphate deh	9e-87
PRK08955	334	PRK08955, PRK08955, glyceraldehyde-3-phosphate deh	3e-74
pfam00044	148	pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate deh	3e-73
smart00846	149	smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate de	2e-72
PRK13535	336	PRK13535, PRK13535, erythrose 4-phosphate dehydrog	2e-66
TIGR01532	325	TIGR01532, E4PD_g-proteo, erythrose-4-phosphate de	7e-64
pfam02800	157	pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate deh	1e-63
PRK08289	477	PRK08289, PRK08289, glyceraldehyde-3-phosphate deh	5e-62
PTZ00353	342	PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-ph	3e-47
COG0136	334	COG0136, Asd, Aspartate-semialdehyde dehydrogenase	3e-08
PRK04207	341	PRK04207, PRK04207, glyceraldehyde-3-phosphate deh	2e-04
pfam01113	122	pfam01113, DapB_N, Dihydrodipicolinate reductase,	3e-04
TIGR01296	338	TIGR01296, asd_B, aspartate-semialdehyde dehydroge	6e-04
TIGR00978	341	TIGR00978, asd_EA, aspartate-semialdehyde dehydrog	0.002
PRK00048	257	PRK00048, PRK00048, dihydrodipicolinate reductase;	0.002
COG0289	266	COG0289, DapB, Dihydrodipicolinate reductase [Amin	0.003

>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase

 Score =  486 bits (1253), Expect = e-175
 Identities = 241/263 (91%), Positives = 257/263 (97%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           K++IGINGFGRIGRLVARV+LQRDDVELVAVNDPFITT+YMTYMFKYDSVHGQWKHHELK
Sbjct: 5   KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELK 64

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
           VKDDKTLLFGEKPVTVFG+RNPE+IPW E GA++VVESTGVFTDKDKAAAHLKGGAKKV+
Sbjct: 65  VKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVV 124

Query: 123 ISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           ISAPSKDAPMFVVGVNEHEYK +L+IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHS
Sbjct: 125 ISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 184

Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGM+FRVPTVDV
Sbjct: 185 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDV 244

Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
           SVVDLTVRLEK A+YDEIK AIK
Sbjct: 245 SVVDLTVRLEKAATYDEIKKAIK 267

Length = 338

>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase

 Score =  473 bits (1220), Expect = e-169
 Identities = 199/264 (75%), Positives = 221/264 (83%), Gaps = 1/264 (0%)

Query: 2   GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
           GK KIGINGFGRIGRLV R+   RDD+E+VAVNDPFI   YM YMFKYDS HG +K   +
Sbjct: 84  GKTKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGT-I 142

Query: 62  KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKV 121
            V DD TL    K + V   R+P EIPW + GAEYVVES+GVFT  +KA+AHLKGGAKKV
Sbjct: 143 NVVDDSTLEINGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKV 202

Query: 122 IISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           +ISAPS DAPMFVVGVNE  YKP +NIVSNASCTTNCLAPLAKV+H++FGI+EGLMTTVH
Sbjct: 203 VISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVH 262

Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           + TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +
Sbjct: 263 ATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN 322

Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
           VSVVDLT RLEK ASY+++KAAIK
Sbjct: 323 VSVVDLTCRLEKSASYEDVKAAIK 346

Length = 421

>gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase; Provisional

 Score =  393 bits (1011), Expect = e-138
 Identities = 178/265 (67%), Positives = 205/265 (77%), Gaps = 5/265 (1%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+GINGFGRIGRLV R  L+R+DVE+VA+NDPF+T DYM Y+ KYDSVHG     E+ V
Sbjct: 3   VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPA-EVSV 61

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
            D   L+ G K V VF  ++P  IPW + G + V ESTGVF  K+KA AHLKGGAKKVI+
Sbjct: 62  TDG-FLMIGSKKVHVFFEKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM 120

Query: 124 SAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           SAP KD  P++V+GVN  +Y     IVSNASCTTNCLAPLAKV++DKFGIVEGLMTTVH+
Sbjct: 121 SAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHA 180

Query: 183 ITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
            TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+P LNGKLTGMAFRVP  
Sbjct: 181 STANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVP 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLT +L K A Y+EI AA+K
Sbjct: 241 DVSVVDLTCKLAKPAKYEEIVAAVK 265

Length = 337

>gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

 Score =  392 bits (1009), Expect = e-138
 Identities = 159/266 (59%), Positives = 194/266 (72%), Gaps = 7/266 (2%)

Query: 3   KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
            +K+ INGFGRIGRLVAR  L+RD D+E+VA+ND     DY+ ++ KYDSVHG++   E+
Sbjct: 1   MIKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFDG-EV 58

Query: 62  KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL-KGGAKK 120
           +VKDD  L+   K + V   R+P  +PWA+ G + VVE TG FT ++KA  HL  GGAKK
Sbjct: 59  EVKDD-ALVVNGKGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKK 117

Query: 121 VIISAPSKDA-PMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
           V+ISAP KD     V GVN + Y     IVSNASCTTNCLAP+AKV++D FGI +GLMTT
Sbjct: 118 VLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLNDAFGIEKGLMTT 177

Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
           VH+ T  QK VDGP  KD R  RAA+ NIIP+STGAAKAVG VLP L GKLTGMA RVPT
Sbjct: 178 VHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPT 236

Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
            +VSVVDLTV LEK+ + +EI AA+K
Sbjct: 237 PNVSVVDLTVELEKEVTVEEINAALK 262

Length = 335

>gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type I

 Score =  389 bits (1002), Expect = e-137
 Identities = 154/264 (58%), Positives = 193/264 (73%), Gaps = 6/264 (2%)

Query: 5   KIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           K+GINGFGRIGRLV R IL++   D+E+VA+ND     +Y+ Y+ KYDSVHG+++  E+ 
Sbjct: 1   KVGINGFGRIGRLVLRAILEKPGNDLEVVAINDL-TDLEYLAYLLKYDSVHGRFEG-EVT 58

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
             +D  ++ G++ ++VF  R+P ++PW   G + V+E TG F DK+K   HL+ GAKKV+
Sbjct: 59  ADEDGLVVNGKEVISVFSERDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVL 118

Query: 123 ISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           ISAPSK D    V GVN  EY P   IVSNASCTTNCLAPLAKV+ + FGIV GLMTTVH
Sbjct: 119 ISAPSKGDVKTIVYGVNHDEYDPSERIVSNASCTTNCLAPLAKVLDEAFGIVSGLMTTVH 178

Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           S T  Q  VDGP  KD R  RAA+ NIIP+STGAAKA+GKVLP L GKLTGMA RVPT +
Sbjct: 179 SYTNDQNLVDGP-HKDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPN 237

Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
           VS+VDL V LEKD + +E+ AA+K
Sbjct: 238 VSLVDLVVNLEKDVTVEEVNAALK 261

This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two PFAM models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 326

>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A; Provisional

 Score =  313 bits (804), Expect = e-107
 Identities = 167/263 (63%), Positives = 204/263 (77%), Gaps = 5/263 (1%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 3   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEV 60

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
           KD   ++ G+K + V   R+P  + W E G + V E+TG+F   + A  H+  GAKKV++
Sbjct: 61  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119

Query: 124 SAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           + PSKD  PMFV G N  +Y  + +IVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 178

Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +V
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238

Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
           SVVDLTVRLEK A+Y++IKAA+K
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVK 261

Length = 331

>gnl|CDD|185614 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

 Score =  308 bits (791), Expect = e-105
 Identities = 159/279 (56%), Positives = 196/279 (70%), Gaps = 14/279 (5%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRD----DVELVAVNDPFITTDYMTYMFKYDSVHGQW 56
           M  +K+GINGFGRIGR+V + I  +     ++++VAV D     +Y  Y  KYD+VHG+ 
Sbjct: 1   MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRP 60

Query: 57  KHHELKVK-------DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDK 109
           K+     K       DD  ++ G +   V   RNP ++PW + G +YV+ESTG+FTDK  
Sbjct: 61  KYTVETTKSSPSVKTDDVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLA 120

Query: 110 AAAHLKGGAKKVIISAP-SKDAPMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKVI- 166
           A  HLKGGAKKV+ISAP S  A   V+GVN+HEY P E ++VSNASCTTNCLAP+  V+ 
Sbjct: 121 AEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHHVVSNASCTTNCLAPIVHVLT 180

Query: 167 HDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPAL 226
            + FGI  GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ 
Sbjct: 181 KEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPST 240

Query: 227 NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
            GKLTGM+FRVPT DVSVVDLT R  +D S  EI AAIK
Sbjct: 241 KGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIK 279

Length = 361

>gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated

 Score =  293 bits (751), Expect = 4e-99
 Identities = 129/265 (48%), Positives = 185/265 (69%), Gaps = 6/265 (2%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           K K+ INGFGRIGR+V R  ++    E+VA+N  +  ++ + ++ KYD+VHG++    ++
Sbjct: 2   KTKVAINGFGRIGRMVFRKAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKFDG-TVE 59

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
             +D  L+ G+K + +   R+P+E+PW + G + V+E+TG F  K+KA  H++ GAKKVI
Sbjct: 60  AFEDHLLVDGKK-IRLLNNRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVI 118

Query: 123 ISAPSKDAPM-FVVGVNEHEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           ++AP K+  +  VVGVNE +   E + I+SNASCTTNCLAP+ KV+ ++FGI  GLMTTV
Sbjct: 119 LTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLAPVVKVLDEQFGIENGLMTTV 178

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           H+ T  QK +D P  KD R  RA   +IIP++TGAAKA+ KVLP LNGKL GMA RVPT 
Sbjct: 179 HAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP 237

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           +VS+VDL V +++D + +EI  A K
Sbjct: 238 NVSLVDLVVDVKRDVTVEEINEAFK 262

Length = 343

>gnl|CDD|180962 PRK07403, PRK07403, glyceraldehyde-3-phosphate dehydrogenase; Reviewed

 Score =  265 bits (679), Expect = 2e-88
 Identities = 134/269 (49%), Positives = 181/269 (67%), Gaps = 13/269 (4%)

Query: 4   VKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT--YMFKYDSVHGQWKHH 59
           +++ INGFGRIGR   R  L R++  +ELVA+ND   T+D  T  ++ KYDS+ G  K +
Sbjct: 2   IRVAINGFGRIGRNFLRCWLGRENSQLELVAIND---TSDPRTNAHLLKYDSMLG--KLN 56

Query: 60  ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119
                D+ ++    K +     RNP  +PW E G + ++ESTGVF  K+ A+ H++ GAK
Sbjct: 57  ADISADENSITVNGKTIKCVSDRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAK 116

Query: 120 KVIISAPSK--DAPMFVVGVNEHEYKPEL-NIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176
           KV+I+AP K  D   +VVGVN HEY  E  NI+SNASCTTNCLAP+AKV+HD FGI++G 
Sbjct: 117 KVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLAPIAKVLHDNFGIIKGT 176

Query: 177 MTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFR 236
           MTT HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  V+P L GKL G+A R
Sbjct: 177 MTTTHSYTGDQRILDA-SHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALR 235

Query: 237 VPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           VPT +VSVVDL V++EK    +++   +K
Sbjct: 236 VPTPNVSVVDLVVQVEKRTITEQVNEVLK 264

Length = 337

>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B

 Score =  267 bits (683), Expect = 1e-87
 Identities = 138/269 (51%), Positives = 185/269 (68%), Gaps = 9/269 (3%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           K+K+ INGFGRIGR   R    R D  +++V VND     +  +++ KYDS+ G +K  +
Sbjct: 75  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSMLGTFKA-D 132

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           +K+ DD+T+    KP+ V   R+P ++PWAE G + V+E TGVF D   A  H++ GAKK
Sbjct: 133 VKIVDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 192

Query: 121 VIISAPSK--DAPMFVVGVNEHEYKPEL-NIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
           VII+AP+K  D P +VVGVNE +Y  E+ NIVSNASCTTNCLAP  KV+ ++FGIV+G M
Sbjct: 193 VIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNCLAPFVKVLDEEFGIVKGTM 252

Query: 178 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
           TT HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  VLP L GKL G+A RV
Sbjct: 253 TTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV 311

Query: 238 PTVDVSVVDLTVRLEKDA-SYDEIKAAIK 265
           PT +VSVVDL V +EK   + +++ AA +
Sbjct: 312 PTPNVSVVDLVVNVEKKGITAEDVNAAFR 340

Length = 442

>gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A; Provisional

 Score =  263 bits (673), Expect = 9e-87
 Identities = 131/266 (49%), Positives = 173/266 (65%), Gaps = 6/266 (2%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           K+K+ INGFGRIGR   R    R D  +++VA+ND        +++ KYDS  G +   +
Sbjct: 60  KIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTG-GVKQASHLLKYDSTLGTFDA-D 117

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           +K   D  +    K + V   RNP  +PW E G + V+E TGVF D++ A  H++ GAKK
Sbjct: 118 VKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKK 177

Query: 121 VIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
           V+I+AP K D P +VVGVN  +YK    I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 178 VLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 237

Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
            HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  VLP L GKL G+A RVPT
Sbjct: 238 THSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 296

Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
            +VSVVDL V++EK    +E+ AA +
Sbjct: 297 PNVSVVDLVVQVEKKTFAEEVNAAFR 322

Length = 395

>gnl|CDD|169599 PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase; Validated

 Score =  229 bits (585), Expect = 3e-74
 Identities = 107/266 (40%), Positives = 164/266 (61%), Gaps = 8/266 (3%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
            +K+GINGFGRIGRL  R      ++E V +NDP      + ++ ++DSVHG+W HHE+ 
Sbjct: 2   TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRW-HHEVT 60

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
            + D  ++   K +     +   +  W  +G + V+E++GV   K    A+L  G K+V+
Sbjct: 61  AEGD-AIVINGKRIRTTQNKAIADTDW--SGCDVVIEASGVMKTKALLQAYLDQGVKRVV 117

Query: 123 ISAPSKDAPMF--VVGVNEHEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
           ++AP K+  +   V+GVN+H + P ++ IV+ ASCTTNCLAP+ KVIH+K GI  G MTT
Sbjct: 118 VTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCLAPVVKVIHEKLGIKHGSMTT 177

Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
           +H +T TQ  +D P  KD R  RA   ++IP++TG+A A+ ++ P L GKL G A RVP 
Sbjct: 178 IHDLTNTQTILDAP-HKDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPL 236

Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
            + S+ D    +E+D + +E+ A +K
Sbjct: 237 ANASLTDCVFEVERDTTVEEVNALLK 262

Length = 334

>gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

 Score =  220 bits (562), Expect = 3e-73
 Identities = 86/151 (56%), Positives = 109/151 (72%), Gaps = 4/151 (2%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGRLV R  L +DD+E+VA+ND     + + Y+ KYDSVHG++   E++V
Sbjct: 1   IKVGINGFGRIGRLVLRAALAQDDLEVVAINDLT-DPETLAYLLKYDSVHGRFDG-EVEV 58

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
            +D  L+   K + VF  R+P E+PW E G + VVESTGVFT  +KA AHLK GAKKVII
Sbjct: 59  DEDG-LIVNGKKIKVFAERDPAELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVII 117

Query: 124 SAPSKD-APMFVVGVNEHEYKPELNIVSNAS 153
           SAP+KD  P FV GVN  +Y PE +IVSNAS
Sbjct: 118 SAPAKDDDPTFVYGVNHEDYDPEDDIVSNAS 148

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 148

>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

 Score =  218 bits (557), Expect = 2e-72
 Identities = 86/152 (56%), Positives = 109/152 (71%), Gaps = 4/152 (2%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGRLV R  L+R DVE+VA+ND     +Y+ Y+ KYDSVHG++    ++V
Sbjct: 1   IKVGINGFGRIGRLVLRAALERPDVEVVAINDL-TDPEYLAYLLKYDSVHGRF-PGTVEV 58

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
           + D  L+   K + VF  R+P  +PW E G + VVE TG FT ++KA+AHLK GAKKVII
Sbjct: 59  EGD-GLVVNGKAIKVFAERDPANLPWGELGVDIVVECTGGFTTREKASAHLKAGAKKVII 117

Query: 124 SAPSKDA-PMFVVGVNEHEYKPELNIVSNASC 154
           SAPSKDA P FV GVN  EY  E +I+SNASC
Sbjct: 118 SAPSKDADPTFVYGVNHDEYDGEDHIISNASC 149

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 149

>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase; Provisional

 Score =  209 bits (533), Expect = 2e-66
 Identities = 97/269 (36%), Positives = 158/269 (58%), Gaps = 13/269 (4%)

Query: 4   VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           +++ INGFGRIGR V R + +   R ++ +VA+N+     + M ++ KYD+ HG++    
Sbjct: 2   IRVAINGFGRIGRNVLRALYESGRRAEITVVAINE-LADAEGMAHLLKYDTSHGRFAW-- 58

Query: 61  LKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119
             V+ ++  LF G+  + +   R+   +PW E G + V++ TGV+  ++   AH+  GAK
Sbjct: 59  -DVRQERDQLFVGDDAIRLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAK 117

Query: 120 KVIISAPSK---DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176
           KV+ S P     DA + V GVN  + + E  IVSNASCTTNC+ P+ K++ D FGI  G 
Sbjct: 118 KVLFSHPGSNDLDATV-VYGVNHDQLRAEHRIVSNASCTTNCIIPVIKLLDDAFGIESGT 176

Query: 177 MTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFR 236
           +TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + ++ P  N +   ++ R
Sbjct: 177 VTTIHSAMNDQQVIDAYHP-DLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVR 235

Query: 237 VPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           VPT++V+ +DL+V ++K    +E+   ++
Sbjct: 236 VPTINVTAIDLSVTVKKPVKVNEVNQLLQ 264

Length = 336

>gnl|CDD|130595 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate dehydrogenase

 Score =  202 bits (515), Expect = 7e-64
 Identities = 99/267 (37%), Positives = 158/267 (59%), Gaps = 11/267 (4%)

Query: 5   KIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
           ++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     
Sbjct: 1   RVAINGFGRIGRNVLRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAW--- 56

Query: 62  KVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           +V+ D+  LF G+  + V   R+ + +PW E G + V++ TGV+  ++   AH+  GAKK
Sbjct: 57  EVRQDRDQLFVGDDAIRVLHERSLQSLPWRELGVDLVLDCTGVYGSREHGEAHIAAGAKK 116

Query: 121 VIISAP-SKDAPMFVV-GVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178
           V+ S P + D    +V GVN+ + + E  IVSNASCTTNC+ P+ K++ D +GI  G +T
Sbjct: 117 VLFSHPGASDLDATIVYGVNQDQLRAEHRIVSNASCTTNCIVPVIKLLDDAYGIESGTIT 176

Query: 179 TVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 238
           T+HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   +A RVP
Sbjct: 177 TIHSAMNDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGIERFFPQFNDRFEAIAVRVP 235

Query: 239 TVDVSVVDLTVRLEKDASYDEIKAAIK 265
           TV+V+ +DL+V ++K    +E+   ++
Sbjct: 236 TVNVTAIDLSVTVKKPVKANEVNLLLQ 262

This model represents the small clade of dehydrogenases in gamma-proteobacteria which utilize NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose. This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 325

>gnl|CDD|217235 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

 Score =  196 bits (500), Expect = 1e-63
 Identities = 77/107 (71%), Positives = 88/107 (82%), Gaps = 1/107 (0%)

Query: 159 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKA 218
           LAPLAKV++D FGI +GLMTTVH+ TA QK VD PS KD R GRAA+ NIIP+STGAAKA
Sbjct: 1   LAPLAKVLNDNFGIEKGLMTTVHAYTADQKLVD-PSHKDLRRGRAAAPNIIPTSTGAAKA 59

Query: 219 VGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           VG VLP L GKLTGMAFRVPT +VSVVDLTV LEK  + +E+ AA+K
Sbjct: 60  VGLVLPELKGKLTGMAFRVPTPNVSVVDLTVELEKPVTVEEVNAALK 106

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold. Length = 157

>gnl|CDD|236219 PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed

 Score =  202 bits (515), Expect = 5e-62
 Identities = 102/271 (37%), Positives = 153/271 (56%), Gaps = 20/271 (7%)

Query: 10  GFGRIGRLVARVILQR----DDVELVAV-------NDPFITTDYMTYMFKYDSVHGQWKH 58
           GFGRIGRL+AR+++++    + + L A+        D     +    + + DSVHG +  
Sbjct: 134 GFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGD----LEKRASLLRRDSVHGPFNG 189

Query: 59  HELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAE--YVVESTGVFTDKDKAAAHLKG 116
                +++  ++     + V    +PEE+ +   G     VV++TG + D++  + HLK 
Sbjct: 190 TITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKS 249

Query: 117 -GAKKVIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174
            G  KV+++AP K D    V GVN  +   E  IVS ASCTTN + P+ K ++DK+GIV 
Sbjct: 250 KGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVSAASCTTNAITPVLKAVNDKYGIVN 309

Query: 175 GLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMA 234
           G + TVHS T  Q  +D     D R GR+A  N++ + TGAAKAV K LP L GKLTG A
Sbjct: 310 GHVETVHSYTNDQNLIDNYHKGD-RRGRSAPLNMVITETGAAKAVAKALPELAGKLTGNA 368

Query: 235 FRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
            RVPT +VS+  L + LEK+ S +E+   ++
Sbjct: 369 IRVPTPNVSMAILNLNLEKETSREELNEYLR 399

Length = 477

>gnl|CDD|173546 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

 Score =  160 bits (406), Expect = 3e-47
 Identities = 78/263 (29%), Positives = 136/263 (51%), Gaps = 1/263 (0%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           + +GINGFG +G+ V    L    V +VAVND  ++  Y+ Y+ + +S         ++V
Sbjct: 3   ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV 62

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
             ++ +L G + + V    +  EI W + G +YVVE TG+++ + +   H+ GGAK V +
Sbjct: 63  VGEQIVLNGTQKIRVSAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFV 122

Query: 124 SAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
           +  S DAP  + G N+      L +    +     LAP+ + +H+ +G+ E   T +H +
Sbjct: 123 AGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAPVIRALHEVYGVEECSYTAIHGM 182

Query: 184 TATQKT-VDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
              +       +S+DWR  R A   I P     A+ V K+LP L G+++G AF+VP    
Sbjct: 183 QPQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPVKKG 242

Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
             +D+ VR ++  S + + +A+ 
Sbjct: 243 CAIDMLVRTKQPVSKEVVDSALA 265

Length = 342

>gnl|CDD|223214 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 51/228 (22%), Positives = 84/228 (36%), Gaps = 43/228 (18%)

Query: 71  FGEKPVTVFGVRNPEEIP--WAETGAEYVVESTGVFTDKDKAAAHLKGGAK--KVIISAP 126
           FG K + V     PE+    +  +  + V  + G       +       A+   V+I   
Sbjct: 47  FGGKSIGV-----PEDAADEFVFSDVDIVFFAAG----GSVSKEVEPKAAEAGCVVIDNS 97

Query: 127 S-----KDAPMFVVGVNEH---EYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178
           S      D P+ V  VN     +Y+    I++N +C+T  L    K +HD FGI   +++
Sbjct: 98  SAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVS 157

Query: 179 TVHSI----------TATQKTVDGPSSKDWRGGRAASFNIIP-----SSTGAAKA----- 218
           T  ++           A Q             G   +FN+IP        G  K      
Sbjct: 158 TYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKEEWKIE 217

Query: 219 --VGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAI 264
               K+L   + K++    RVP        +TV  +KD   +EI+  +
Sbjct: 218 AETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREEL 265

Length = 334

>gnl|CDD|179786 PRK04207, PRK04207, glyceraldehyde-3-phosphate dehydrogenase; Provisional

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 3  KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYM 46
           +K+G+NG+G IG+ VA  +  + D+ELV V       DY   +
Sbjct: 1  MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAK--TKPDYEARV 42

Length = 341

>gnl|CDD|216304 pfam01113, DapB_N, Dihydrodipicolinate reductase, N-terminus

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 4  VKIGINGF-GRIGRLVARVILQRDDVELVAV 33
          +K+ + G  GR+GR + + IL+  D ELVA 
Sbjct: 1  IKVAVVGASGRMGRELIKAILEAPDFELVAA 31

Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH. Length = 122

>gnl|CDD|233347 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 128 KDAPMFVVGVNEHEYK--PELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184
            D P+ V  VN  + K      I++N +C+T  +  + K +HD+  I   +++T  +++
Sbjct: 99  PDVPLVVPEVNFEDLKEFNPKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVS 157

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978 [Amino acid biosynthesis, Aspartate family]. Length = 338

>gnl|CDD|233220 TIGR00978, asd_EA, aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 20/130 (15%)

Query: 148 IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFN 207
           IV+N +CTT  L    K + D FGI +  +TT+ +++       G  S D         N
Sbjct: 140 IVTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGY--PGVPSMDILD------N 191

Query: 208 IIPSSTGAAKAVGKVLPALNGKLTG------------MAFRVPTVDVSVVDLTVRLEKDA 255
           IIP   G  + + +    + GKL                 RVP +D     + V  +K  
Sbjct: 192 IIPHIGGEEEKIERETRKILGKLENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKF 251

Query: 256 SYDEIKAAIK 265
             +EI+ A+K
Sbjct: 252 DIEEIREALK 261

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan [Amino acid biosynthesis, Aspartate family]. Length = 341

>gnl|CDD|234595 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 3  KVKIGINGF-GRIGRLVARVILQRDDVELVAV 33
           +K+ + G  GR+GR +   +   +D+ELVA 
Sbjct: 1  MIKVAVAGASGRMGRELIEAVEAAEDLELVAA 32

Length = 257

>gnl|CDD|223366 COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 3  KVKIGINGF-GRIGRLVARVILQRDDVELVAV 33
           +K+ + G  GR+GR + R +L+  D+ELVA 
Sbjct: 2  MIKVAVAGASGRMGRTLIRAVLEAPDLELVAA 33

Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	100.0
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	100.0
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	100.0
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	100.0
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	100.0
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	100.0
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	100.0
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	100.0
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	100.0
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	100.0
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	100.0
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	100.0
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	100.0
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	100.0
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	100.0
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	100.0
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	100.0
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	100.0
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	100.0
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	100.0
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	100.0
PLN02383	344	aspartate semialdehyde dehydrogenase	100.0
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	100.0
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	100.0
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	100.0
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	100.0
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	100.0
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	100.0
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	100.0
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	100.0
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	100.0
KOG0657	285	consensus Glyceraldehyde 3-phosphate dehydrogenase	100.0
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	100.0
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	100.0
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	100.0
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	100.0
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	100.0
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	100.0
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	99.97
KOG4354	340	consensus N-acetyl-gamma-glutamyl-phosphate reduct	99.94
KOG4777	361	consensus Aspartate-semialdehyde dehydrogenase [Am	99.9
PF02800	157	Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase,	99.78
PRK08300	302	acetaldehyde dehydrogenase; Validated	99.69
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	99.67
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	99.6
PF02774	184	Semialdhyde_dhC: Semialdehyde dehydrogenase, dimer	99.38
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.96
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	98.92
PRK13303	265	L-aspartate dehydrogenase; Provisional	98.83
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.75
PRK11579	346	putative oxidoreductase; Provisional	98.74
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.73
COG0673	342	MviM Predicted dehydrogenases and related proteins	98.61
TIGR00036	266	dapB dihydrodipicolinate reductase.	98.59
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.53
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	98.53
PRK00048	257	dihydrodipicolinate reductase; Provisional	98.51
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.49
PRK10206	344	putative oxidoreductase; Provisional	98.49
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	98.45
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	98.45
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	98.38
PRK06349	426	homoserine dehydrogenase; Provisional	98.34
PRK06270	341	homoserine dehydrogenase; Provisional	98.3
PLN02775	286	Probable dihydrodipicolinate reductase	98.01
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	98.01
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	97.78
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.75
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	97.73
PRK08374	336	homoserine dehydrogenase; Provisional	97.67
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	97.63
PRK06813	346	homoserine dehydrogenase; Validated	97.62
PRK06392	326	homoserine dehydrogenase; Provisional	97.6
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	97.58
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	97.58
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	97.58
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.56
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	97.46
COG2344	211	AT-rich DNA-binding protein [General function pred	97.4
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.36
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	97.29
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.26
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.15
PLN02700	377	homoserine dehydrogenase family protein	97.12
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.07
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	96.99
PTZ00431	260	pyrroline carboxylate reductase; Provisional	96.97
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.78
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.75
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.68
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.59
PRK07417	279	arogenate dehydrogenase; Reviewed	96.56
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	96.55
PLN02256	304	arogenate dehydrogenase	96.48
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	96.46
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.46
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.42
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.42
PRK06223	307	malate dehydrogenase; Reviewed	96.37
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	96.31
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.31
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	96.31
CHL00194	317	ycf39 Ycf39; Provisional	96.31
COG2910	211	Putative NADH-flavin reductase [General function p	96.29
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.29
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.22
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.21
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.17
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	96.17
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.1
PRK08818	370	prephenate dehydrogenase; Provisional	96.06
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.03
PRK08507	275	prephenate dehydrogenase; Validated	96.0
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.92
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.9
PLN02688	266	pyrroline-5-carboxylate reductase	95.87
PRK07680	273	late competence protein ComER; Validated	95.83
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	95.77
PRK08618	325	ornithine cyclodeaminase; Validated	95.71
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.67
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	95.64
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.55
PTZ00117	319	malate dehydrogenase; Provisional	95.52
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	95.48
PTZ00325	321	malate dehydrogenase; Provisional	95.46
PLN02712	667	arogenate dehydrogenase	95.4
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.4
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.37
PRK09414	445	glutamate dehydrogenase; Provisional	95.36
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.35
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	95.33
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	95.28
PRK06046	326	alanine dehydrogenase; Validated	95.27
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.27
PLN02602	350	lactate dehydrogenase	95.21
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.2
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.14
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	95.11
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	95.04
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	95.03
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.02
PLN00016	378	RNA-binding protein; Provisional	95.02
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	94.99
PLN02712	667	arogenate dehydrogenase	94.96
PRK05479	330	ketol-acid reductoisomerase; Provisional	94.89
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	94.83
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.77
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	94.69
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	94.62
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	94.59
PLN00106	323	malate dehydrogenase	94.58
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.55
PLN00112	444	malate dehydrogenase (NADP); Provisional	94.54
PRK06444	197	prephenate dehydrogenase; Provisional	94.47
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.45
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	94.45
PRK05086	312	malate dehydrogenase; Provisional	94.42
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.4
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	94.4
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.35
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	94.33
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.26
PRK13403	335	ketol-acid reductoisomerase; Provisional	94.09
COG3804	350	Uncharacterized conserved protein related to dihyd	94.04
PRK08605	332	D-lactate dehydrogenase; Validated	93.96
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	93.95
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.94
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	93.93
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.89
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	93.86
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.82
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	93.82
PRK07574	385	formate dehydrogenase; Provisional	93.81
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.8
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	93.75
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.74
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	93.74
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	93.74
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.68
PRK15059	292	tartronate semialdehyde reductase; Provisional	93.66
PRK08655	437	prephenate dehydrogenase; Provisional	93.63
PRK06545	359	prephenate dehydrogenase; Validated	93.59
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	93.52
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	93.44
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	93.41
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	93.37
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	93.36
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	93.32
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.27
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	93.24
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	93.21
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.14
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.11
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	93.05
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	93.04
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.93
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	92.9
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	92.89
PLN03139	386	formate dehydrogenase; Provisional	92.63
COG0569	225	TrkA K+ transport systems, NAD-binding component [	92.58
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	92.55
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.37
KOG2742	367	consensus Predicted oxidoreductase [General functi	92.15
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	92.11
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.0
PLN00203	519	glutamyl-tRNA reductase	91.99
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.91
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	91.86
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	91.85
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	91.81
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	91.69
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	91.59
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	91.59
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	91.54
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	91.28
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	91.2
PRK05442	326	malate dehydrogenase; Provisional	91.12
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	91.12
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.04
PRK08291	330	ectoine utilization protein EutC; Validated	91.02
PLN02166	436	dTDP-glucose 4,6-dehydratase	91.02
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	91.0
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.85
PLN02353	473	probable UDP-glucose 6-dehydrogenase	90.81
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	90.75
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.58
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	90.52
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	90.41
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	90.24
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	90.15
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	90.13
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	90.12
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	90.12
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.03
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	90.03
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.93
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	89.9
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	89.81
PRK06487	317	glycerate dehydrogenase; Provisional	89.75
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	89.74
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	89.67
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.66
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	89.63
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	89.55
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	89.54
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	89.5
PRK06932	314	glycerate dehydrogenase; Provisional	89.5
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	89.5
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.49
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.48
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	89.47
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	89.41
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	89.31
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	89.29
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	89.28
COG5322	351	Predicted dehydrogenase [General function predicti	89.06
PRK07236	386	hypothetical protein; Provisional	89.05
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	89.02
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	88.95
PRK12320	699	hypothetical protein; Provisional	88.92
PRK14031	444	glutamate dehydrogenase; Provisional	88.82
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	88.76
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	88.69
COG0743	385	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	88.63
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.63
PRK08219	227	short chain dehydrogenase; Provisional	88.62
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	88.54
PLN02928	347	oxidoreductase family protein	88.46
KOG0455	364	consensus Homoserine dehydrogenase [Amino acid tra	88.36
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	88.33
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	88.23
PRK12480	330	D-lactate dehydrogenase; Provisional	88.18
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	88.17
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	88.16
PRK06436	303	glycerate dehydrogenase; Provisional	87.93
PRK13243	333	glyoxylate reductase; Reviewed	87.73
PRK14030	445	glutamate dehydrogenase; Provisional	87.67
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.6
PRK06407	301	ornithine cyclodeaminase; Provisional	87.58
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	87.49
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	87.08
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	87.06
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	87.05
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	87.02
PLN02858	1378	fructose-bisphosphate aldolase	86.96
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	86.88
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	86.68
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	86.51
PLN02427	386	UDP-apiose/xylose synthase	86.47
PRK06199	379	ornithine cyclodeaminase; Validated	86.47
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	86.23
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	86.17
PLN02858	1378	fructose-bisphosphate aldolase	85.97
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	85.93
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	85.74
PLN02477	410	glutamate dehydrogenase	85.69
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.54
PLN02306	386	hydroxypyruvate reductase	85.35
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	85.28
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	85.06
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	84.98
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	84.94
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	84.74
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	84.45
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	84.45
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	84.4
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.29
PRK05865	854	hypothetical protein; Provisional	83.91
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.78
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.76
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	83.62
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	83.59
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	83.51
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	83.29
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.25
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.21
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.03
PRK05562	223	precorrin-2 dehydrogenase; Provisional	82.95
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	82.87
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.77
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	82.66
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.23
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	82.15
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	82.14
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	82.12
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	82.05
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	81.97
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	81.92
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	81.9
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	81.77
PRK06823	315	ornithine cyclodeaminase; Validated	81.72
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	81.68
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	81.49
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	81.38
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	81.28
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	81.21
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	81.2
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	80.95
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	80.89
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	80.7
PLN00198	338	anthocyanidin reductase; Provisional	80.69
PRK13512	438	coenzyme A disulfide reductase; Provisional	80.67
PRK15076	431	alpha-galactosidase; Provisional	80.65
KOG2733	423	consensus Uncharacterized membrane protein [Functi	80.54
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	80.53
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	80.52
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	80.5
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	80.43
PLN02240	352	UDP-glucose 4-epimerase	80.38
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	80.35

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-58  Score=408.39  Aligned_cols=261  Identities=68%  Similarity=1.073  Sum_probs=243.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ++||||+|||+|||.++|++.+++++|+++|+|+..+.+.++|||+|||+||+|+ +++..+++ .|.++|+.++++++.
T Consensus         2 ~~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~~~~~~   79 (337)
T PTZ00023          2 VVKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLP-AEVSVTDG-FLMIGSKKVHVFFEK   79 (337)
T ss_pred             ceEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCC-CcEEecCC-EEEECCeEEEEEeCC
Confidence            4899999999999999999888889999999997778899999999999999998 77766655 799999999999999


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CCceEEeeeccccccCCCCeEEcCCCchhhhHh
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAP  161 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~  161 (265)
                      ||++++|+..++|+||||||.+.++++++.++++|+++|++|++.+ ++|++|||+|++.+++..++||||+|+++|++|
T Consensus        80 dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~Lap  159 (337)
T PTZ00023         80 DPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAP  159 (337)
T ss_pred             ChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHHH
Confidence            9999999999999999999999999999999999999888888744 479999999999997656799999999999999


Q ss_pred             HHHHHHHhcCceEEEEEEEeeccccccccCCCC--CCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565          162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT  239 (265)
Q Consensus       162 ~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~--~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~  239 (265)
                      +|+||+++|||+++.+|++|++|..|..+|+++  +.+++++|++++|++|+.+|.++++.+++|++.++++.+++|||+
T Consensus       160 ~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRVPt  239 (337)
T PTZ00023        160 LAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPV  239 (337)
T ss_pred             HHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEecc
Confidence            999999999999999999999999988888865  467899999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          240 VDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       240 ~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++||+.+++++++++++.||++++|+
T Consensus       240 ~~~s~~dltv~l~k~vt~eev~~al~  265 (337)
T PTZ00023        240 PDVSVVDLTCKLAKPAKYEEIVAAVK  265 (337)
T ss_pred             cCeEEEEEEEEECCCCCHHHHHHHHH
Confidence            99999999999999999999999874

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=100.00  E-value=4.1e-58  Score=408.02  Aligned_cols=263  Identities=92%  Similarity=1.388  Sum_probs=247.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ++||||+|+|++|+.++|.+.++|++++++|+|+..+.+.++|||+|||+||+|++..+..++|+.|.++|+.+.++...
T Consensus         5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~~   84 (338)
T PLN02358          5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGIR   84 (338)
T ss_pred             ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEcC
Confidence            58999999999999999999989999999999987788999999999999999982266665676899999999999888


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchhhhHhH
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPL  162 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~~  162 (265)
                      ||++++|...++|+||||||.+.++++++.++++|+|++++|++++|.|++|||+|++.+++..++||||+|++++++++
T Consensus        85 ~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap~  164 (338)
T PLN02358         85 NPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPL  164 (338)
T ss_pred             CcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHHH
Confidence            89999998889999999999999999999999999999999998878899999999999976568999999999999999


Q ss_pred             HHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeCce
Q 024565          163 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV  242 (265)
Q Consensus       163 L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~~G  242 (265)
                      |+||+++|||+++.+|++|++|+.|..+|++++++++++|++++|++|+.+|.++++.+++|++.++++.+++|||+++|
T Consensus       165 lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRVPv~~g  244 (338)
T PLN02358        165 AKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDV  244 (338)
T ss_pred             HHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEEeeEcCe
Confidence            99999999999999999999999999999876789999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEecCCCCHHHHHHHhC
Q 024565          243 SVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       243 ~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |+.+++++++++++.||++++|+
T Consensus       245 s~~dl~v~~~~~~t~eev~~~l~  267 (338)
T PLN02358        245 SVVDLTVRLEKAATYDEIKKAIK  267 (338)
T ss_pred             eEEEEEEEECCCCCHHHHHHHHH
Confidence            99999999999999999999874

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=100.00  E-value=3.6e-58  Score=406.03  Aligned_cols=259  Identities=64%  Similarity=1.031  Sum_probs=242.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ++||||+|||+|||.++|++.+++++|+++|+|. .+.+.++|||+|||+||+|+ +++..+++ .|.++|+.+.++++.
T Consensus         2 ~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~~   78 (331)
T PRK15425          2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAER   78 (331)
T ss_pred             ceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcC-CcEEecCC-EEEECCeEEEEEEcC
Confidence            4899999999999999999888889999999995 47889999999999999998 77766655 799999999998878


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CCceEEeeeccccccCCCCeEEcCCCchhhhHh
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAP  161 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~  161 (265)
                      +|++++|.+.++|+||||||.+.+++.++.++++|+|+|++|++.+ +.|++|||+|.+.+++ .++||||+|+++|+++
T Consensus        79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~Lap  157 (331)
T PRK15425         79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAP  157 (331)
T ss_pred             ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHHH
Confidence            9999999877999999999999999999999999999888998854 4699999999999975 6899999999999999


Q ss_pred             HHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeCc
Q 024565          162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD  241 (265)
Q Consensus       162 ~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~~  241 (265)
                      +|+||+++|||+++.+|++|++|+.|..+|++++++++++|++++|++|+.+|.++++++++|++.|+++.+++|||+++
T Consensus       158 vlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~  237 (331)
T PRK15425        158 LAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN  237 (331)
T ss_pred             HHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEecccC
Confidence            99999999999999999999999999999987667999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEecCCCCHHHHHHHhC
Q 024565          242 VSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       242 G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ||+.+++++++++++.||++++|+
T Consensus       238 gs~~dltv~l~~~~t~eev~~al~  261 (331)
T PRK15425        238 VSVVDLTVRLEKAATYEQIKAAVK  261 (331)
T ss_pred             eEEEEEEEEECCCCCHHHHHHHHH
Confidence            999999999999999999999874

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=100.00  E-value=2.2e-57  Score=409.32  Aligned_cols=262  Identities=76%  Similarity=1.163  Sum_probs=244.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |+||||+|||+||+.++|.+...+++++++|+++..+.++++|||+||++||+|+ +.+...+++.|.++|+.+.++...
T Consensus        85 ~~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~~l~~~G~~I~V~~~~  163 (421)
T PLN02272         85 KTKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDSTLEINGKQIKVTSKR  163 (421)
T ss_pred             ceEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCCEEEECCEEEEEEecC
Confidence            4799999999999999999887778999999998778899999999999999998 777652344799999999998878


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchhhhHhH
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPL  162 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~~  162 (265)
                      +|++++|++.++|+||||||.+.+++.++.++++|+|++||+++++|.|++|||+|++.++...++||||+|++++++++
T Consensus       164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~  243 (421)
T PLN02272        164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPL  243 (421)
T ss_pred             CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHH
Confidence            99999998779999999999999999999999999999999888778899999999999986568999999999999999


Q ss_pred             HHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeCce
Q 024565          163 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV  242 (265)
Q Consensus       163 L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~~G  242 (265)
                      |+||+++|||+++.+|++|++|++++++|++++++++++|++++|++|+.+|.++++.+++|++.|+++.+++|||+++|
T Consensus       244 lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~g  323 (421)
T PLN02272        244 AKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV  323 (421)
T ss_pred             HHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEeccCce
Confidence            99999999999999999999999999999886779999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEecCCCCHHHHHHHhC
Q 024565          243 SVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       243 ~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |+.+++++|+++++.||++++|+
T Consensus       324 s~~dltv~lek~~s~eev~~alk  346 (421)
T PLN02272        324 SVVDLTCRLEKSASYEDVKAAIK  346 (421)
T ss_pred             EEEEEEEEECCCCCHHHHHHHHH
Confidence            99999999999999999999874

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-57  Score=402.24  Aligned_cols=264  Identities=59%  Similarity=0.952  Sum_probs=244.8

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcC----CCeEEEEEeccccChhhhhhheeecccCCcccccceeee-------CCceE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK-------DDKTL   69 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~----p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l   69 (265)
                      ||++||||+|||+|||.++|++.+.    +++|+++|+++..+.+.++|||+|||+||+|+ +.+...       .++.|
T Consensus         1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~~l   79 (361)
T PTZ00434          1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDDVL   79 (361)
T ss_pred             CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcC-CceeecccccccccCCEE
Confidence            7779999999999999999998864    68999999997778899999999999999998 666541       33479


Q ss_pred             EECCEEEEEE-ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccC-CC
Q 024565           70 LFGEKPVTVF-GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKP-EL  146 (265)
Q Consensus        70 ~~~g~~~~~~-~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~-~~  146 (265)
                      .++|+.+.++ ++.||++++|.+.++|+|++|||.+.+++.+..++++|+|+|+||++.++ .+++|||+|++.+++ ..
T Consensus        80 ~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~  159 (361)
T PTZ00434         80 VVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEH  159 (361)
T ss_pred             EECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccC
Confidence            9999999986 77899999999999999999999999999999999999999999999665 578999999999986 36


Q ss_pred             CeEEcCCCchhhhHhHHHHH-HHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccC
Q 024565          147 NIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPA  225 (265)
Q Consensus       147 ~~Va~p~C~~ta~~~~L~pL-~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e  225 (265)
                      ++|||.+|+++|++|.++.| +++|||+++.+|++|++++.|+++|++++.+|+.+|..+.|++|..+|.++.+.+++|+
T Consensus       160 ~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~  239 (361)
T PTZ00434        160 HVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPS  239 (361)
T ss_pred             cEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceeccc
Confidence            79999999999999999999 79999999999999999999999999866899999999999999999999999999999


Q ss_pred             CCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          226 LNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       226 ~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |+|+++.+++|||+..|++.+++++++++++.|||+++|+
T Consensus       240 L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k  279 (361)
T PTZ00434        240 TKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIK  279 (361)
T ss_pred             cCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999874

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=100.00  E-value=1.1e-56  Score=397.06  Aligned_cols=259  Identities=49%  Similarity=0.825  Sum_probs=240.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+||||+|||+|||.++|++.++  +++|+++|++.. +.+.++|||+|||+||+|+ +.+..+++ .|.++|+.+.++.
T Consensus         1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~-~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~I~v~~   77 (337)
T PRK07403          1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTS-DPRTNAHLLKYDSMLGKLN-ADISADEN-SITVNGKTIKCVS   77 (337)
T ss_pred             CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCC-CHHHHHHHHhhccCCCCCC-CcEEEcCC-EEEECCEEEEEEE
Confidence            48999999999999999998766  579999999964 7889999999999999998 77665544 7999999999998


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC--CCceEEeeeccccccC-CCCeEEcCCCchh
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNEHEYKP-ELNIVSNASCTTN  157 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~--~~~~~v~~vn~~~~~~-~~~~Va~p~C~~t  157 (265)
                      +.||++++|...++|+||||||.+.+++.++.++++|+|+|++|++..  |.|++|||+|.+.+++ ..++||||+|+++
T Consensus        78 ~~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn  157 (337)
T PRK07403         78 DRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTN  157 (337)
T ss_pred             cCCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHH
Confidence            789999999878999999999999999999999999999898998843  4699999999999974 3579999999999


Q ss_pred             hhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEe
Q 024565          158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV  237 (265)
Q Consensus       158 a~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~v  237 (265)
                      |++|+|+||+++|||+++.+|++|++|++|+++|++ +.+++++|..++|++|+.+|.++++.+++|+++|+++.+++||
T Consensus       158 ~Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~-~~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRV  236 (337)
T PRK07403        158 CLAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDAS-HRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRV  236 (337)
T ss_pred             HHHHHHHHHHHhcCeeEEEEEEEeeecCCccccccc-ccccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEe
Confidence            999999999999999999999999999999999987 5799999999999999999999999999999999999999999


Q ss_pred             eeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          238 PTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       238 P~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |+..||+++++++++++++.|||+++|+
T Consensus       237 Pt~~vs~~dl~v~l~k~~t~eeI~~~~~  264 (337)
T PRK07403        237 PTPNVSVVDLVVQVEKRTITEQVNEVLK  264 (337)
T ss_pred             ccCCcEEEEEEEEECCCCCHHHHHHHHH
Confidence            9999999999999999999999999874

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=100.00  E-value=3.6e-56  Score=399.74  Aligned_cols=260  Identities=50%  Similarity=0.809  Sum_probs=242.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ++||||+|||++|+.++|+|.++  |.+++++|++.. +.+.++|||+|||+||.|+ +++..+.|+.|.++|+.+.++.
T Consensus        60 ~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~~-~~~~~ayLl~yDS~hG~f~-~~v~~~~g~~l~v~gk~I~v~~  137 (395)
T PLN03096         60 KIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTG-GVKQASHLLKYDSTLGTFD-ADVKPVGDDAISVDGKVIKVVS  137 (395)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCCC-CHHHHHHHHhhcccCCCcC-CcEEEecCCEEEECCEEEEEEE
Confidence            47999999999999999999876  789999999865 7889999999999999998 7776656668999999999998


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CCceEEeeeccccccCCCCeEEcCCCchhhh
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCL  159 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~  159 (265)
                      +.||++++|...++|+||||||.+.+++.++.++++|+|+|++|++.+ ++|++|||+|++.+++..++||||+|+++|+
T Consensus       138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~L  217 (395)
T PLN03096        138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCL  217 (395)
T ss_pred             cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHHH
Confidence            889999999888999999999999999999999999999999998843 4799999999999976568999999999999


Q ss_pred             HhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565          160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT  239 (265)
Q Consensus       160 ~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~  239 (265)
                      +|+++||+++|||+++.+|++|++|+.|+.+|++ +.+++++|+.++|++|+.+|.++++.+++|+|.|+++.+++|||+
T Consensus       218 Ap~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~-~~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVPv  296 (395)
T PLN03096        218 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT  296 (395)
T ss_pred             HHHHHHHHHhcCeeEEEEEEEEccccccccccCC-CCccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEccc
Confidence            9999999999999999999999999999999986 468899999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          240 VDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       240 ~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++||..+++++++++++.||++++|+
T Consensus       297 ~~gs~~dltv~~~~~~t~eev~~al~  322 (395)
T PLN03096        297 PNVSVVDLVVQVEKKTFAEEVNAAFR  322 (395)
T ss_pred             cceEEEEEEEEECCCCCHHHHHHHHH
Confidence            99999999999999999999999874

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=100.00  E-value=7.5e-56  Score=391.98  Aligned_cols=258  Identities=60%  Similarity=0.970  Sum_probs=238.7

Q ss_pred             EEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCE-EEEEEec
Q 024565            5 KIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGV   81 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~   81 (265)
                      ||||+|||+|||.++|++.++  +++++++|+|. .+.+.++|||+|||+||+|+ +.+..++++.|.++|+ .+.++++
T Consensus         1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~   78 (327)
T TIGR01534         1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASE   78 (327)
T ss_pred             CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEec
Confidence            799999999999999998877  57999999997 58899999999999999998 7776555425999999 9999887


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccCCCCeEEcCCCchhhhH
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLA  160 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~  160 (265)
                      .+|++++|++.++|+||||||.+.+++.++.++++|+|+|++|+++.| +|++|||+|++.++...++||||+|++++++
T Consensus        79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La  158 (327)
T TIGR01534        79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA  158 (327)
T ss_pred             CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence            899999998779999999999999999999999999998989988655 7999999999999865679999999999999


Q ss_pred             hHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeC
Q 024565          161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV  240 (265)
Q Consensus       161 ~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~  240 (265)
                      ++|+||+++|||+++.+|++|++|+++..+|+++ .+++++|+.++|++|+.+|+++++.+++|+++++++.+++|||++
T Consensus       159 p~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~  237 (327)
T TIGR01534       159 PLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTP  237 (327)
T ss_pred             HHHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEeccc
Confidence            9999999999999999999999999999999864 678999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          241 DVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       241 ~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      +||+.+++++++++++.||++++|+
T Consensus       238 ~gs~~dl~v~~~~~~t~eev~~al~  262 (327)
T TIGR01534       238 NVSLVDLVLNLEKDTTKEEVNAALK  262 (327)
T ss_pred             CeEEEEEEEEECCCCCHHHHHHHHH
Confidence            9999999999999999999999874

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=100.00  E-value=1.5e-55  Score=391.15  Aligned_cols=258  Identities=41%  Similarity=0.746  Sum_probs=239.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ++||||+|+|+||+.++|.+.+++++++++++++..+.++++||++|||+||+|+ +.+. ..|+.+.++|+.+.+++..
T Consensus         2 ~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~-~~v~-~~g~~l~~~g~~i~v~~~~   79 (334)
T PRK08955          2 TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWH-HEVT-AEGDAIVINGKRIRTTQNK   79 (334)
T ss_pred             CeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCC-CCEE-EcCCEEEECCEEEEEEecC
Confidence            4899999999999999999999999999999997778899999999999999998 7665 4455899999999998777


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC--CCceEEeeeccccccC-CCCeEEcCCCchhhh
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNEHEYKP-ELNIVSNASCTTNCL  159 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~--~~~~~v~~vn~~~~~~-~~~~Va~p~C~~ta~  159 (265)
                      ++++++|+  ++|+||||||.+.++++++.++++|+++|++|+++.  |.|++|||+|++.+++ ..++||||+|+++++
T Consensus        80 ~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~L  157 (334)
T PRK08955         80 AIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCL  157 (334)
T ss_pred             ChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHH
Confidence            99999995  899999999999999999999999999888988843  4699999999999986 267999999999999


Q ss_pred             HhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565          160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT  239 (265)
Q Consensus       160 ~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~  239 (265)
                      +++|+||+++|||+++.+|++|++|.++..+|++. .+++++|+.++|++|+.+|.++++.+++|++.|+++.+++|||+
T Consensus       158 ap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv  236 (334)
T PRK08955        158 APVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPL  236 (334)
T ss_pred             HHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchhheeccccccCCCccccceEccccCCcEEEEEEEecc
Confidence            99999999999999999999999999999999874 67899999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          240 VDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       240 ~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++||+.+++++|+++++.||++++|+
T Consensus       237 ~~gs~~dl~v~~~~~~s~eev~~~l~  262 (334)
T PRK08955        237 ANASLTDCVFEVERDTTVEEVNALLK  262 (334)
T ss_pred             CCeEEEEEEEEECCCCCHHHHHHHHH
Confidence            99999999999999999999999874

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=100.00  E-value=4.5e-55  Score=387.08  Aligned_cols=259  Identities=49%  Similarity=0.844  Sum_probs=239.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ++||||+|||+|||.++|++.+++++|+++|++.. +.+.++|||+|||+||+|+ +++..+++ .|.++|+.+.++++.
T Consensus         2 ~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~~-~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~v~g~~I~v~~~~   78 (343)
T PRK07729          2 KTKVAINGFGRIGRMVFRKAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKKIRLLNNR   78 (343)
T ss_pred             ceEEEEECcChHHHHHHHHHhhcCCcEEEEecCCC-CHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEEcC
Confidence            48999999999999999998888899999999864 7889999999999999998 77665554 799999999999888


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccC-CCCeEEcCCCchhhhH
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKP-ELNIVSNASCTTNCLA  160 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~-~~~~Va~p~C~~ta~~  160 (265)
                      ||++++|...++|+||||||.+.+++.++.++++|+++|++|++..+ .+.+|+|+|++.+++ ..++||||+|++++++
T Consensus        79 dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~La  158 (343)
T PRK07729         79 DPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLA  158 (343)
T ss_pred             ChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHHH
Confidence            99999998889999999999999999999999999998889988544 345689999999975 3579999999999999


Q ss_pred             hHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeC
Q 024565          161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV  240 (265)
Q Consensus       161 ~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~  240 (265)
                      |+|+||+++|||+++.+|++|++|+.|+++|++ +.+++.+|..+.|++|..+++++.+.+++|+++|+++.+++|||++
T Consensus       159 p~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~-~~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt~  237 (343)
T PRK07729        159 PVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNP-HKDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP  237 (343)
T ss_pred             HHHHHHHHhcCeeEEEEEEEecccCcccccccc-hhhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeeec
Confidence            999999999999999999999999999999987 4788889999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          241 DVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       241 ~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      +||+.+++++++++++.|+++++|+
T Consensus       238 ~~s~~dltv~l~k~~t~eev~~~l~  262 (343)
T PRK07729        238 NVSLVDLVVDVKRDVTVEEINEAFK  262 (343)
T ss_pred             CeEEEEEEEEECCCCCHHHHHHHHH
Confidence            9999999999999999999999874

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=100.00  E-value=2.9e-55  Score=395.98  Aligned_cols=260  Identities=52%  Similarity=0.848  Sum_probs=240.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ++||||+|||+|||.++|.+.++  +++|+++|++.. +.+.++|||+|||+||.|+ +.+...+++.|.++|+.+.+++
T Consensus        75 ~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~-~~~~~ayLlkyDS~hG~f~-~~v~~~~~~~L~v~Gk~I~V~~  152 (442)
T PLN02237         75 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSMLGTFK-ADVKIVDDETISVDGKPIKVVS  152 (442)
T ss_pred             eEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCC-CHHHHHHHHccccCCCCcC-CceEECCCCEEEECCEEEEEEE
Confidence            48999999999999999997755  789999999954 8899999999999999998 7765434457999999999988


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC--CCceEEeeeccccccCC-CCeEEcCCCchh
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNEHEYKPE-LNIVSNASCTTN  157 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~--~~~~~v~~vn~~~~~~~-~~~Va~p~C~~t  157 (265)
                      ..+|.+++|.+.++|+||||||.+.+++.++.++++|+|+|++|++..  ++|++|||+|++.+++. .++||||+|+++
T Consensus       153 ~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTTN  232 (442)
T PLN02237        153 NRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTN  232 (442)
T ss_pred             cCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHHH
Confidence            668999999888999999999999999999999999999999998854  47999999999999854 579999999999


Q ss_pred             hhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEe
Q 024565          158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV  237 (265)
Q Consensus       158 a~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~v  237 (265)
                      |++|+++||+++|||+++.+|++|++|++|+++|++ +.+|+.+|..+.||+|..+|.++.+.+++|+|.|+++.+++||
T Consensus       233 cLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~-h~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~RV  311 (442)
T PLN02237        233 CLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV  311 (442)
T ss_pred             HHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCC-CcccccccccccccccCCcchhhhhceecccCCCceeeEEEec
Confidence            999999999999999999999999999999999987 5899999999999999999999999999999999999999999


Q ss_pred             eeCceEEEEEEEEecC-CCCHHHHHHHhC
Q 024565          238 PTVDVSVVDLTVRLEK-DASYDEIKAAIK  265 (265)
Q Consensus       238 P~~~G~~~~~~v~~~~-~~~~e~v~~~~~  265 (265)
                      |+..|++.++++++++ +++.|||+++|+
T Consensus       312 Pt~nvS~vDLt~~l~k~~~t~eein~~~k  340 (442)
T PLN02237        312 PTPNVSVVDLVVNVEKKGITAEDVNAAFR  340 (442)
T ss_pred             ccCCceEEEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999998 799999999874

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-54  Score=383.16  Aligned_cols=259  Identities=36%  Similarity=0.696  Sum_probs=238.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC---CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~---p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+||||+|||++|+.++|+|.++   +++++++|+|.. +.+.++|||+|||+||+|+ +.+.. .|+.|.++|+.+.++
T Consensus         1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~-~~~~~ayll~ydS~hg~~~-~~v~~-~~~~l~v~g~~i~v~   77 (336)
T PRK13535          1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELA-DAEGMAHLLKYDTSHGRFA-WDVRQ-ERDQLFVGDDAIRLL   77 (336)
T ss_pred             CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCC-CHHHHHHHhhhccCCCCCC-CcEEe-cCCEEEECCEEEEEE
Confidence            48999999999999999999874   579999999964 8899999999999999998 77654 445899999999999


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-C-CceEEeeeccccccCCCCeEEcCCCchh
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNEHEYKPELNIVSNASCTTN  157 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~-~~~~v~~vn~~~~~~~~~~Va~p~C~~t  157 (265)
                      ++.+|++++|...++|+||+|||.+.++++++.++++|+|++++|++.. | .+++|||+|++.+++..++||||+|+++
T Consensus        78 ~~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn  157 (336)
T PRK13535         78 HERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTN  157 (336)
T ss_pred             EcCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHH
Confidence            8889999999888999999999999999999999999999888988843 3 3489999999999865679999999999


Q ss_pred             hhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEe
Q 024565          158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV  237 (265)
Q Consensus       158 a~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~v  237 (265)
                      |++++|+||+++|||+++.+||+|++|..|+++|++ +.+++.+|..++|++|+..+.++++.+++|++.++++.+++||
T Consensus       158 ~Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~-~~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRV  236 (336)
T PRK13535        158 CIIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAY-HPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRV  236 (336)
T ss_pred             HHHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhch-hhccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEe
Confidence            999999999999999999999999999889999987 4788999999999999988888999999999999999999999


Q ss_pred             eeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          238 PTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       238 P~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |+++||+.+++++++++++.||++++|+
T Consensus       237 Pv~~gs~~dl~v~~~~~~t~eei~~~l~  264 (336)
T PRK13535        237 PTINVTAIDLSVTVKKPVKVNEVNQLLQ  264 (336)
T ss_pred             CccCcEEEEEEEEECCCCCHHHHHHHHH
Confidence            9999999999999999999999999874

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-53  Score=378.00  Aligned_cols=261  Identities=30%  Similarity=0.551  Sum_probs=235.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECC-EEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~   81 (265)
                      ++||||+|||+|||.++|++.+++++|+++|+++..+.+.++|||+|||+||+|.+..+..+++ .|.++| +.+.++++
T Consensus         2 ~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~-~l~i~g~~~i~~~~~   80 (342)
T PTZ00353          2 PITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGE-QIVLNGTQKIRVSAK   80 (342)
T ss_pred             CeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCC-EEecCCCeEEEEEec
Confidence            3799999999999999999888889999999997668899999999999999995246655554 799998 89999998


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchhhhHh
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAP  161 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~  161 (265)
                      .+|++++|++.++|+||||||.+.+.+....++++|+|++++|++++|.|++|||+|++.+++..++||||+|+++|++|
T Consensus        81 ~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap  160 (342)
T PTZ00353         81 HDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAP  160 (342)
T ss_pred             CCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHHH
Confidence            99999999878999999999999999999999999999999999987889999999999998656799999999999999


Q ss_pred             HHHHHHHhcCceEEEEEEEeeccccccccCCCC--CCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565          162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT  239 (265)
Q Consensus       162 ~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~--~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~  239 (265)
                      +++||+++|||+++.+||+|++. .+...|.+.  +++++.+|..+.|++|..++..+++.+++|++.|+++.+++|||+
T Consensus       161 vlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVPt  239 (342)
T PTZ00353        161 VIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPV  239 (342)
T ss_pred             HHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEccc
Confidence            99999999999999999998885 343445443  368898988889999999998999999999999999999999999


Q ss_pred             CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          240 VDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       240 ~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++|++.+++++++++++.||++++|+
T Consensus       240 ~~vs~vdltv~~~k~~t~eein~~l~  265 (342)
T PTZ00353        240 KKGCAIDMLVRTKQPVSKEVVDSALA  265 (342)
T ss_pred             cCeEEEEEEEEECCCCCHHHHHHHHH
Confidence            99999999999999999999999874

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.9e-53  Score=369.19  Aligned_cols=259  Identities=61%  Similarity=0.957  Sum_probs=242.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||||+|||+|||.++|++.+++ ++|+++|++. .+++.+||+++||++||.|. +.+..+++ .+.++|+.|+++..
T Consensus         1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~-~~v~~~~~-~~~v~g~~I~v~~~   77 (335)
T COG0057           1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFD-GEVEVKDD-ALVVNGKGIKVLAE   77 (335)
T ss_pred             CcEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCC-CcccccCC-eEEECCceEEEEec
Confidence            489999999999999999999998 7999999996 47899999999999999998 66544444 78899999999988


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhC-CCCeEEEcCCCCC-CceEEeeeccccccCCCCeEEcCCCchhhh
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG-GAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCL  159 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~-G~~~vvis~~~~~-~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~  159 (265)
                      .+|+.++|++.++|+|++|||.+.+++..++++++ |+|+|++|++..+ ++.+||++|.+.++...++|+|.||+|+|+
T Consensus        78 ~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcL  157 (335)
T COG0057          78 RDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCL  157 (335)
T ss_pred             CChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhh
Confidence            89999999999999999999999999999999988 5999999999765 899999999999986678999999999999


Q ss_pred             HhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565          160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT  239 (265)
Q Consensus       160 ~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~  239 (265)
                      +|.+++|.++|||+.+.+|++|+.++.|...|+|. .+|+.+|.++.|++|..+++++++.+++|+|+|+++.+++|||+
T Consensus       158 ap~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt  236 (335)
T COG0057         158 APVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPT  236 (335)
T ss_pred             HHHHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecC
Confidence            99999999999999999999999999999999974 68999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          240 VDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       240 ~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ..+|+.+++++++++++.|||+++|+
T Consensus       237 ~~vs~~dl~v~l~k~~t~eeIn~alk  262 (335)
T COG0057         237 PNVSVVDLTVELEKEVTVEEINAALK  262 (335)
T ss_pred             CCcEEEEEEEEeCCCCCHHHHHHHHH
Confidence            99999999999999999999999874

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=100.00  E-value=5.8e-52  Score=367.99  Aligned_cols=257  Identities=37%  Similarity=0.699  Sum_probs=233.7

Q ss_pred             EEEEEccChhHHHHHHHHHcCC---CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            5 KIGINGFGRIGRLVARVILQRD---DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p---~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      ||||+|+|++|+.++|+|.+++   ++++++|++.. +.+.++|+++||++||.|+ +.+..+ |+.|.++|+.+.++..
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~-~~~~~ayll~yDS~hg~~~-~~v~~~-~~~l~v~g~~i~v~~~   77 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELA-DQASMAHLLRYDTSHGRFP-GEVKVD-GDCLHVNGDCIRVLHS   77 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCC-CHHHHHHHHhhCccCCCCC-CcEEEe-CCEEEECCeEEEEEEc
Confidence            6999999999999999998764   69999999864 6788999999999999998 776544 4589999999999988


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-C-CceEEeeeccccccCCCCeEEcCCCchhhh
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNEHEYKPELNIVSNASCTTNCL  159 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~-~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~  159 (265)
                      .+|++++|...++|+||+|||.+.++++++.++++|++++++|++.. + ..++|||+|++.+++..++||||+|+|+|+
T Consensus        78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~l  157 (325)
T TIGR01532        78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCI  157 (325)
T ss_pred             CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHH
Confidence            89999999888999999999999999999999999999888888832 3 347999999999986567999999999999


Q ss_pred             HhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565          160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT  239 (265)
Q Consensus       160 ~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~  239 (265)
                      +++|+||+++|||+++.+|++|++|+.++++|++ +.+++.+|....|++|+..+..+++++++|++.++++.+++|||+
T Consensus       158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~-~~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv  236 (325)
T TIGR01532       158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAY-HHDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPT  236 (325)
T ss_pred             HHHHHHHHHhcCeeEEEEEEEEhhcCCccccccc-hhhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEecc
Confidence            9999999999999999999999999999999987 468888876666999998888899999999999999999999999


Q ss_pred             CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          240 VDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       240 ~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++||+.+++++++++++.||++++|+
T Consensus       237 ~~~s~~dl~v~~~~~~~~eev~~~l~  262 (325)
T TIGR01532       237 VNVTALDLSVTTKRDVKANEVNRVLR  262 (325)
T ss_pred             cCcEEEEEEEEECCCCCHHHHHHHHH
Confidence            99999999999999999999999874

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=100.00  E-value=5e-52  Score=375.65  Aligned_cols=261  Identities=39%  Similarity=0.618  Sum_probs=240.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC----CCeEEEEEecc---ccChhhhhhheeecccCCcccccceeeeC-CceEEECCE
Q 024565            3 KVKIGINGFGRIGRLVARVILQR----DDVELVAVNDP---FITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGEK   74 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~----p~~el~~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~   74 (265)
                      +.||||+|||+|||.++|++.++    +++++++|+++   ..+.+.++|||+|||+||+|. +++.... ++.|.+||+
T Consensus       127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~~liing~  205 (477)
T PRK08289        127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFN-GTITVDEENNAIIANGN  205 (477)
T ss_pred             CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCC-CceEeecCCCEEEECCE
Confidence            46999999999999999998866    57999999742   236778999999999999998 7766542 347999999


Q ss_pred             EEEEEecCCCCCCCccccccc--EEEEecCCcccHHhHHHHHh-CCCCeEEEcCCCCC-CceEEeeeccccccCCCCeEE
Q 024565           75 PVTVFGVRNPEEIPWAETGAE--YVVESTGVFTDKDKAAAHLK-GGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVS  150 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~D--vV~~at~~~~~~~~~~~~~~-~G~~~vvis~~~~~-~~~~v~~vn~~~~~~~~~~Va  150 (265)
                      .++++++.+|+++||...++|  +|+|||+.+.+.+.+..+++ +|+|+|++|++.++ +|++|||+|++.+++..++||
T Consensus       206 ~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~IIS  285 (477)
T PRK08289        206 YIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVS  285 (477)
T ss_pred             EEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEEE
Confidence            999999999999999999999  99999999999999999999 89999999999654 799999999999976567999


Q ss_pred             cCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCce
Q 024565          151 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKL  230 (265)
Q Consensus       151 ~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v  230 (265)
                      ||+|+++|++|+++||+++|||+++.+|++|++|+.|.++|++ +.+++++|+.++|++|..+|.++++.+++|++.|++
T Consensus       286 nASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~-hkd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GKl  364 (477)
T PRK08289        286 AASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNY-HKGDRRGRSAPLNMVITETGAAKAVAKALPELAGKL  364 (477)
T ss_pred             CCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhh-hhcCcccceeeeeeEecCCChhhhhhhcccccCCcE
Confidence            9999999999999999999999999999999999999999986 468899999999999999999999999999999999


Q ss_pred             eEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          231 TGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       231 ~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      +.+++|||++.|++++++++++++++.|||+++|+
T Consensus       365 tg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk  399 (477)
T PRK08289        365 TGNAIRVPTPNVSMAILNLNLEKETSREELNEYLR  399 (477)
T ss_pred             EEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999874

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-41  Score=303.15  Aligned_cols=232  Identities=22%  Similarity=0.260  Sum_probs=185.3

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHc--CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~--~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      .++||||+|+ |++|++++|+|.+  ||.+++..+++.+..++                          .+.+.++++.+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~--------------------------~~~~~~~~~~v   56 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGE--------------------------TLRFGGKSVTV   56 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCc--------------------------eEEECCcceEE
Confidence            4689999999 9999999999999  89999999987643332                          23333444444


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeecc---ccccCCCCeEEcC
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNE---HEYKPELNIVSNA  152 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~---~~~~~~~~~Va~p  152 (265)
                         +++++++|  .++|+||+|+|++.+.++++.+.++|++.+..|++   +++.|..+|++|+   +.++ ++++|+||
T Consensus        57 ---~~~~~~~~--~~~Dvvf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~-~~~iIAnP  130 (336)
T PRK08040         57 ---QDAAEFDW--SQAQLAFFVAGREASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYR-NRNIIAVA  130 (336)
T ss_pred             ---EeCchhhc--cCCCEEEECCCHHHHHHHHHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhhc-cCCEEECC
Confidence               24556666  46999999999999999999999999954445776   3468999999999   6665 47899999


Q ss_pred             CCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccC------------CCCCCcccCCccCCCceeecC--------
Q 024565          153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVD------------GPSSKDWRGGRAASFNIIPSS--------  212 (265)
Q Consensus       153 ~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d------------~~~~~~~~~~~~~a~n~~p~~--------  212 (265)
                      ||++|+++++|+||+++++|+++.+++++++||+++...            +.+.+...++.++++|++||.        
T Consensus       131 gC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~  210 (336)
T PRK08040        131 DSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVR  210 (336)
T ss_pred             CHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcch
Confidence            999999999999999999999999999999999854221            111122567878999999993        


Q ss_pred             -CCh-hhHHHhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          213 -TGA-AKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       213 -~~~-~~~~~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                       |.| .+|+.|++..-+..++|||++|||+|||++++|++|+++++.++++++|+
T Consensus       211 ~erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~  265 (336)
T PRK08040        211 EERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALE  265 (336)
T ss_pred             HhhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHh
Confidence             344 56677776322234999999999999999999999999999999999884

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=100.00  E-value=7.1e-40  Score=294.03  Aligned_cols=230  Identities=22%  Similarity=0.326  Sum_probs=183.0

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHc--CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            3 KVKIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~--~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+||+|+|+ |++|++++|+|.+  ||.+++.++++....++                          .+.+++..+.+.
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~--------------------------~l~~~g~~i~v~   54 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGK--------------------------ELSFKGKELKVE   54 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCC--------------------------eeeeCCceeEEe
Confidence            379999999 9999999999999  79999999887642332                          122333334442


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccCC--CCeEEcCCC
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKPE--LNIVSNASC  154 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~~--~~~Va~p~C  154 (265)
                         +++..+|  .++|+||+|+|++.+++++++++++|++.+.+|++   +++.|..+||+|++.++..  .++|+||||
T Consensus        55 ---d~~~~~~--~~vDvVf~A~g~g~s~~~~~~~~~~G~~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C  129 (334)
T PRK14874         55 ---DLTTFDF--SGVDIALFSAGGSVSKKYAPKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNC  129 (334)
T ss_pred             ---eCCHHHH--cCCCEEEECCChHHHHHHHHHHHhCCCEEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccH
Confidence               3443446  47999999999999999999999999932333665   2357899999999999752  379999999


Q ss_pred             chhhhHhHHHHHHHhcCceEEEEEEEeecccccc------------ccCCC--CCCcccCCccCCCceeecC-----CCh
Q 024565          155 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGP--SSKDWRGGRAASFNIIPSS-----TGA  215 (265)
Q Consensus       155 ~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~------------~~d~~--~~~~~~~~~~~a~n~~p~~-----~~~  215 (265)
                      |+|+++++|+||+++++|+++.+++++++||+++            .+|.+  +..+.+++|+++||++|+.     ++|
T Consensus       130 ~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh  209 (334)
T PRK14874        130 STIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGY  209 (334)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCC
Confidence            9999999999999999999999999999998533            23311  1245678899999999997     667


Q ss_pred             hhH-------HHhhc--cCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          216 AKA-------VGKVL--PALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       216 ~~~-------~~~~l--~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      .+|       +.+++  |++  +++|+|+|||++|||+.++|++++++++.+|++++|+
T Consensus       210 ~~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~  266 (334)
T PRK14874        210 TKEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILA  266 (334)
T ss_pred             cHHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence            766       34454  554  4999999999999999999999999999999999884

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=100.00  E-value=1.2e-39  Score=291.13  Aligned_cols=232  Identities=15%  Similarity=0.186  Sum_probs=182.9

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHH--cCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            3 KVKIGINGF-GRIGRLVARVIL--QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~--~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+||+|+|+ |++|++++|+|.  +||.+++..+.+.+..++.                          +.+.|+.+.+.
T Consensus         4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~--------------------------l~~~~~~l~~~   57 (336)
T PRK05671          4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHS--------------------------VPFAGKNLRVR   57 (336)
T ss_pred             CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCe--------------------------eccCCcceEEe
Confidence            589999999 999999999999  7899999999876433321                          22223233332


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC--CCCCceEEeeeccccccC--CCCeEEcCCCc
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP--SKDAPMFVVGVNEHEYKP--ELNIVSNASCT  155 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~--~~~~~~~v~~vn~~~~~~--~~~~Va~p~C~  155 (265)
                         ++++.+|  .++|+||+|+|++.+.++++.++++|++.+..|++  -++.|..+|++|++.++.  ++++|+||||+
T Consensus        58 ---~~~~~~~--~~vD~vFla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPgC~  132 (336)
T PRK05671         58 ---EVDSFDF--SQVQLAFFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPSAS  132 (336)
T ss_pred             ---eCChHHh--cCCCEEEEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCCcH
Confidence               2232334  57999999999999999999999999965556777  246899999999998873  26899999999


Q ss_pred             hhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCC------------CCCcccCCccCCCceeecCC-----ChhhH
Q 024565          156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP------------SSKDWRGGRAASFNIIPSST-----GAAKA  218 (265)
Q Consensus       156 ~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~------------~~~~~~~~~~~a~n~~p~~~-----~~~~~  218 (265)
                      +|+++++|+||++.++++++.+++++++||+++.....            ......|+++++||++|+..     +|..|
T Consensus       133 ~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~e  212 (336)
T PRK05671        133 AVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHTAL  212 (336)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCccHH
Confidence            99999999999988889999999999999985433211            11234678899999999874     55545


Q ss_pred             HHhhccCC-------CCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          219 VGKVLPAL-------NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       219 ~~~~l~e~-------~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      +.||.+|+       +.+++|||++|||+|||+.++|++|+++++.++++++|+
T Consensus       213 E~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~  266 (336)
T PRK05671        213 ERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALE  266 (336)
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHh
Confidence            45554443       335899999999999999999999999999999999884

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.5e-40  Score=288.36  Aligned_cols=238  Identities=16%  Similarity=0.139  Sum_probs=186.0

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      +|+||+|+|+ ||+|.|++|+|.+||++|+..+.++...+..+      .+.|++++ +.             ..++. +
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~------~~~~p~l~-g~-------------~~l~~-~   59 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPV------SDVHPNLR-GL-------------VDLPF-Q   59 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCch------HHhCcccc-cc-------------ccccc-c
Confidence            3699999999 99999999999999999987777765344332      35567665 21             01122 2


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCC--------------C----C-CceEEee---ec
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS--------------K----D-APMFVVG---VN  138 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~--------------~----~-~~~~v~~---vn  138 (265)
                      ..+++++  ...++|+||.|+|++.+.+.++.+++.|++.+.+|+|.              +    + ...+|||   ++
T Consensus        60 ~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~  137 (349)
T COG0002          60 TIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELH  137 (349)
T ss_pred             cCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccC
Confidence            2344443  13569999999999999999999999999766679981              0    1 2368887   68


Q ss_pred             cccccCCCCeEEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC---CCh
Q 024565          139 EHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TGA  215 (265)
Q Consensus       139 ~~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~---~~~  215 (265)
                      +++|+. +++|+|||||+||..++|+||.++..|+.....+++++||.+.++..++. ...+. ...+|+.||.   |.|
T Consensus       138 ~e~i~~-A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~-~~~~~-e~~~~~~~Y~~~~HrH  214 (349)
T COG0002         138 REKIRG-AKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASV-KNHFP-EVNDSLRPYGLTGHRH  214 (349)
T ss_pred             HHHHhc-CCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccc-cccch-hhccccccccccccCc
Confidence            899994 99999999999999999999999977765555689999998777665542 22332 3455677666   788


Q ss_pred             hhHHHhhccCCC---CceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          216 AKAVGKVLPALN---GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       216 ~~~~~~~l~e~~---~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      .+|+.|++..+.   .++.|+||.+|++||+++|+|+++++.++.+|+.++|+
T Consensus       215 ~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~  267 (349)
T COG0002         215 TPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYE  267 (349)
T ss_pred             hHHHHHHhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHH
Confidence            999999998776   45899999999999999999999999999999999873

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-39  Score=288.88  Aligned_cols=232  Identities=18%  Similarity=0.293  Sum_probs=181.1

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeE---EEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVE---LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~e---l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      .+||||+|+ |++|++++|+|.+||+|+   +..+.+....                          |+.+.+.++.+.+
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~sa--------------------------Gk~~~~~~~~l~v   58 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSA--------------------------GKTVQFKGREIII   58 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccC--------------------------CCCeeeCCcceEE
Confidence            479999999 999999999999999998   5555554322                          2234444444444


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccCCCCeEEcCCCc
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKPELNIVSNASCT  155 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~~~~~Va~p~C~  155 (265)
                      . ..++++  |  .++|+||+|+|++.++++++++.++|++.+..|++   +++.|..+|++|++.++...++|+||||+
T Consensus        59 ~-~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~  133 (347)
T PRK06728         59 Q-EAKINS--F--EGVDIAFFSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCS  133 (347)
T ss_pred             E-eCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCH
Confidence            2 234443  3  57999999999999999999999999943444666   46799999999999998523799999999


Q ss_pred             hhhhHhHHHHHHHhcCceEEEEEEEeecccccccc-C-----------CCCCCcccCC-------ccCCCceeecC----
Q 024565          156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTV-D-----------GPSSKDWRGG-------RAASFNIIPSS----  212 (265)
Q Consensus       156 ~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~-d-----------~~~~~~~~~~-------~~~a~n~~p~~----  212 (265)
                      +|+++++|+||+++++|+++.+++++++||+++.. +           +.......++       ++++||++|+.    
T Consensus       134 tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~  213 (347)
T PRK06728        134 ALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFT  213 (347)
T ss_pred             HHHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCccc
Confidence            99999999999999999999999999999974321 1           1112234566       89999999998    


Q ss_pred             -CChhh-------HHHhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          213 -TGAAK-------AVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       213 -~~~~~-------~~~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                       ++..+       |.+|++..-+..+++||+|||||+||..+++++|+++++.++++++|.
T Consensus       214 ~~g~t~EE~K~~~E~~KIL~~~~l~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~  274 (347)
T PRK06728        214 DNDFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLF  274 (347)
T ss_pred             cCCccHHHHHHHHHHHHHhCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence             34333       355666322335999999999999999999999999999999999873

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=100.00  E-value=6e-39  Score=287.79  Aligned_cols=232  Identities=16%  Similarity=0.196  Sum_probs=180.3

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHc--CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            3 KVKIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~--~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      ++||+|+|+ |++|++++|+|.+  ||.+++..+.+.+..++                          .+..++..+.+ 
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk--------------------------~~~~~~~~~~v-   59 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGK--------------------------KVTFEGRDYTV-   59 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCC--------------------------eeeecCceeEE-
Confidence            589999999 9999999999998  89999999977643332                          12222323333 


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccCC------CCeEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKPE------LNIVS  150 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~~------~~~Va  150 (265)
                      ...+++.  |  .++|+||+|+|++.+.++++++.++|++.+..|++   .++.|..+|++|++.++..      +++|+
T Consensus        60 ~~~~~~~--~--~~~D~vf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIa  135 (344)
T PLN02383         60 EELTEDS--F--DGVDIALFSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIA  135 (344)
T ss_pred             EeCCHHH--H--cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEE
Confidence            2223333  3  57999999999999999999999999954555777   4568999999999998851      23999


Q ss_pred             cCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccC------------CCCCCcccCCccCCCceeecCCC----
Q 024565          151 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVD------------GPSSKDWRGGRAASFNIIPSSTG----  214 (265)
Q Consensus       151 ~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d------------~~~~~~~~~~~~~a~n~~p~~~~----  214 (265)
                      ||||++|+++++|+||+++++|+++.+++++++||+++...            +.+.+...++++.+||++|++|.    
T Consensus       136 nPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~  215 (344)
T PLN02383        136 NPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQEN  215 (344)
T ss_pred             CCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccC
Confidence            99999999999999999999999999999999999844221            11124567889999999998863    


Q ss_pred             -hh-hH------HHhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          215 -AA-KA------VGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       215 -~~-~~------~~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                       +. +|      ..+++..-..+++|||+|||++|||++++|++++++++.++++++|.
T Consensus       216 g~~~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~  274 (344)
T PLN02383        216 GYNEEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILA  274 (344)
T ss_pred             CCChHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHh
Confidence             11 22      22454222235999999999999999999999999999999999874

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=100.00  E-value=1.9e-38  Score=284.70  Aligned_cols=230  Identities=22%  Similarity=0.307  Sum_probs=181.3

Q ss_pred             EEEEEcc-ChhHHHHHHHHHc--CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            5 KIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         5 ~vgI~G~-G~~G~~l~~~L~~--~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      ||+|+|+ |++|++++++|.+  ||.++++.+++....+.                          .+.+.|..+.+ .+
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~--------------------------~~~~~~~~~~~-~~   53 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGR--------------------------KVTFKGKELEV-NE   53 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCC--------------------------eeeeCCeeEEE-Ee
Confidence            6999999 9999999999998  79899888876542332                          22233333333 21


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccC--CCCeEEcCCCch
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKP--ELNIVSNASCTT  156 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~--~~~~Va~p~C~~  156 (265)
                      .+.++  |  .++|+||+|+|++.+.+++++++++|++.+..|++   +++.|.++||+|++.+++  ..++|+||||++
T Consensus        54 ~~~~~--~--~~~D~v~~a~g~~~s~~~a~~~~~~G~~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~  129 (339)
T TIGR01296        54 AKIES--F--EGIDIALFSAGGSVSKEFAPKAAKCGAIVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCST  129 (339)
T ss_pred             CChHH--h--cCCCEEEECCCHHHHHHHHHHHHHCCCEEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence            22222  3  57999999999999999999999999932223554   245899999999999875  134999999999


Q ss_pred             hhhHhHHHHHHHhcCceEEEEEEEeeccccccc------------cCCCCCCc-------ccCCccCCCceeecC-----
Q 024565          157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VDGPSSKD-------WRGGRAASFNIIPSS-----  212 (265)
Q Consensus       157 ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~------------~d~~~~~~-------~~~~~~~a~n~~p~~-----  212 (265)
                      |+++++|+||+++++|+++.++++|++||+++.            .+.+....       ..++++.++|++|+.     
T Consensus       130 t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~  209 (339)
T TIGR01296       130 IQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFND  209 (339)
T ss_pred             HHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCccc
Confidence            999999999999999999999999999997432            22221111       577889999999985     


Q ss_pred             CChhhHHHhhccCCC-------CceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          213 TGAAKAVGKVLPALN-------GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       213 ~~~~~~~~~~l~e~~-------~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++|.+|+.|+.+|+.       .+++++|+|||++|||++++|++++++++.+|++++|+
T Consensus       210 ~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~  269 (339)
T TIGR01296       210 DGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLK  269 (339)
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHh
Confidence            478888777777764       36999999999999999999999999999999999884

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=100.00  E-value=3e-38  Score=283.03  Aligned_cols=232  Identities=16%  Similarity=0.182  Sum_probs=176.9

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeE---EEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVE---LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~e---l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+||||+|+ |++|++++++|++||+++   +....+.. ++..                         .+.++|+...+
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~-sg~~-------------------------~~~f~g~~~~v   54 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ-AGGA-------------------------APSFGGKEGTL   54 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh-hCCc-------------------------ccccCCCcceE
Confidence            389999999 999999999889999887   55533321 2211                         11222333334


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE--cCC---CCCCceEEeeeccccccCCC-----Ce
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP---SKDAPMFVVGVNEHEYKPEL-----NI  148 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi--s~~---~~~~~~~v~~vn~~~~~~~~-----~~  148 (265)
                      +...++++  |  .++|+||+|+|+++++++++++.++|++.+||  |++   .++.|+++|++|+++++. +     ++
T Consensus        55 ~~~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~-~~~~g~~i  129 (369)
T PRK06598         55 QDAFDIDA--L--KKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDD-ALANGVKT  129 (369)
T ss_pred             EecCChhH--h--cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHh-hhhcCCCE
Confidence            32222333  3  57999999999999999999999999543566  555   467999999999998874 3     48


Q ss_pred             EEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccc------------cC-------------------------
Q 024565          149 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VD-------------------------  191 (265)
Q Consensus       149 Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~------------~d-------------------------  191 (265)
                      |+||||++|+++++|+||++.++|+++.++++|++||++..            .+                         
T Consensus       130 IanPnC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (369)
T PRK06598        130 FVGGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMR  209 (369)
T ss_pred             EEcCChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcc
Confidence            99999999999999999999988999999999999998542            11                         


Q ss_pred             CCCCCcccCCccCCCceeecCC-----ChhhH-------HHhhccC--CCCceeEEEEEeeeCceEEEEEEEEecCCCCH
Q 024565          192 GPSSKDWRGGRAASFNIIPSST-----GAAKA-------VGKVLPA--LNGKLTGMAFRVPTVDVSVVDLTVRLEKDASY  257 (265)
Q Consensus       192 ~~~~~~~~~~~~~a~n~~p~~~-----~~~~~-------~~~~l~e--~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~  257 (265)
                      +.......|+++++||++|+..     |+.+|       .+|++..  -..++++||+||||++||..+++++|+++++.
T Consensus       210 ~~~~~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~sv~ve~~~~~~~  289 (369)
T PRK06598        210 SGDLPTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPL  289 (369)
T ss_pred             cCCCCcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCH
Confidence            1112344678899999999983     44444       4566632  22359999999999999999999999999999


Q ss_pred             HHHHHHhC
Q 024565          258 DEIKAAIK  265 (265)
Q Consensus       258 e~v~~~~~  265 (265)
                      ++++++|+
T Consensus       290 ~~i~~~L~  297 (369)
T PRK06598        290 AEIEEILA  297 (369)
T ss_pred             HHHHHHHH
Confidence            99999873

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=100.00  E-value=4.1e-37  Score=268.86  Aligned_cols=229  Identities=19%  Similarity=0.279  Sum_probs=183.3

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCccccccee-eeCCceEEECCEEEEE
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK-VKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~   78 (265)
                      |.+++||| |+ |.+|++++++|.++. |.+       .+..    ++  ++          . .+.|+.+.++|+++.+
T Consensus         1 ~~~~~iAi-GATg~VG~~~l~~Leer~-fpv-------~~l~----l~--~s----------~~~s~gk~i~f~g~~~~V   55 (322)
T PRK06901          1 MATLNIAI-AAEFELSEKLLEALEQSD-LEI-------EQIS----IV--EI----------EPFGEEQGIRFNNKAVEQ   55 (322)
T ss_pred             CCcceEEE-ecCcHHHHHHHHHHHhcC-Cch-------hhee----ec--cc----------ccccCCCEEEECCEEEEE
Confidence            78899999 99 999999999999874 421       1111    11  01          1 2445678888888877


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE---cCC--CCCCceEEeeeccccccC--CCCeEEc
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII---SAP--SKDAPMFVVGVNEHEYKP--ELNIVSN  151 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi---s~~--~~~~~~~v~~vn~~~~~~--~~~~Va~  151 (265)
                      .   +.++.+|  .++|++|| ++...++++++.+.++|+  +||   |++  ++|+|++||++|.+.++.  ..++|+|
T Consensus        56 ~---~l~~~~f--~~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIan  127 (322)
T PRK06901         56 I---APEEVEW--ADFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSL  127 (322)
T ss_pred             E---ECCccCc--ccCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEEC
Confidence            3   3444455  67999999 999999999999999999  777   444  467999999999998874  2579999


Q ss_pred             CCCchhhhHhHHHHHHHhcCceEEEEEEEeecccccc------------ccCCCCCCcccCCccCCCceeecCC-ChhhH
Q 024565          152 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSSKDWRGGRAASFNIIPSST-GAAKA  218 (265)
Q Consensus       152 p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~------------~~d~~~~~~~~~~~~~a~n~~p~~~-~~~~~  218 (265)
                      |+|++++++++|+||++.|+|+++.++++|++||++.            .+++.+.  ....++++||++|+.. +-..|
T Consensus       128 PNCsTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~--~~~~~~iAFNviP~ig~~m~~E  205 (322)
T PRK06901        128 PDPQVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPL--DEEEQRLAFDVFPANAQNLELQ  205 (322)
T ss_pred             CcHHHHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCC--CCCceeeeccccccCCccHHHH
Confidence            9999999999999999999999999999999999732            1121111  1223789999999994 45678


Q ss_pred             HHhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          219 VGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       219 ~~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      .+|++|++ .+++.||+||||++||+.+++++|+++++.+++.++|.
T Consensus       206 trKIl~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~  251 (322)
T PRK06901        206 LQKIFPQL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQ  251 (322)
T ss_pred             HHHHhCCc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence            89999877 24899999999999999999999999999999999873

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.7e-37  Score=268.92  Aligned_cols=232  Identities=23%  Similarity=0.315  Sum_probs=176.9

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHc-CCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            3 KVKIGINGF-GRIGRLVARVILQ-RDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~-~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+||||+|+ |.+|++++++|.+ |+.++.+.+.....+ ++.          +               +.+.++.+.+.
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~----------~---------------~~f~~~~~~v~   55 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKK----------Y---------------IEFGGKSIGVP   55 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCc----------c---------------ccccCccccCc
Confidence            489999999 9999999999998 888886655543222 211          1               22223222221


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE---cCC--CCCCceEEeeeccccccCC--C-CeEEc
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII---SAP--SKDAPMFVVGVNEHEYKPE--L-NIVSN  151 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi---s~~--~~~~~~~v~~vn~~~~~~~--~-~~Va~  151 (265)
                      . .-.+..+|  +++|+||+|.|..+++++.+++.++|+  +||   |+.  .+|+|++||++|.+.+...  . ++|+|
T Consensus        56 ~-~~~~~~~~--~~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iian  130 (334)
T COG0136          56 E-DAADEFVF--SDVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIAN  130 (334)
T ss_pred             c-cccccccc--ccCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEEC
Confidence            1 11344545  579999999999999999999999998  888   444  4679999999999887642  2 39999


Q ss_pred             CCCchhhhHhHHHHHHHhcCceEEEEEEEeecccccc-ccCCCC---------CCcccCCccCCCceeecCCC-----hh
Q 024565          152 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGPS---------SKDWRGGRAASFNIIPSSTG-----AA  216 (265)
Q Consensus       152 p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~-~~d~~~---------~~~~~~~~~~a~n~~p~~~~-----~~  216 (265)
                      |+|++..++++|+||+++++|+++.++|+|++||++. .++...         ..-.-.+++++||++|+..+     +.
T Consensus       131 pNCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t  210 (334)
T COG0136         131 PNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYT  210 (334)
T ss_pred             CChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCcccccccccccccccccCCccccCCcc
Confidence            9999999999999999999999999999999999854 332210         00011157899999999954     55


Q ss_pred             hHH-------HhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHh
Q 024565          217 KAV-------GKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAI  264 (265)
Q Consensus       217 ~~~-------~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~  264 (265)
                      +|+       +|+++.-..+++++|+|||+++||+..++++|+++++.+|+.+.+
T Consensus       211 ~EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~  265 (334)
T COG0136         211 KEEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREEL  265 (334)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHH
Confidence            554       456665455799999999999999999999999999999998553

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=100.00  E-value=6.2e-37  Score=269.89  Aligned_cols=216  Identities=11%  Similarity=0.057  Sum_probs=169.9

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||||+|+ ||+|++++|+|.+||+++++++.+.....                                   +     
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~-----------------------------------~-----   41 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD-----------------------------------A-----   41 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc-----------------------------------c-----
Confidence            699999999 99999999999999999999997642110                                   0     


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeec---cccccCCCCeEEcCCCc
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVN---EHEYKPELNIVSNASCT  155 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn---~~~~~~~~~~Va~p~C~  155 (265)
                      .+.++. |  .++|+||+|+|++.+.++++++.+.|++.+.+|++   +++.|..+|++|   ++.++ .+++|+|||||
T Consensus        42 ~~~~~~-~--~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~-~~~~IanPgC~  117 (313)
T PRK11863         42 AARREL-L--NAADVAILCLPDDAAREAVALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA-AAKRVANPGCY  117 (313)
T ss_pred             cCchhh-h--cCCCEEEECCCHHHHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh-cCCeEEcCCcH
Confidence            011111 3  46999999999999999999999999965556887   356788888895   56676 48899999999


Q ss_pred             hhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCccc--CCccCCCceeecC----CChhhHHHhhccCCCCc
Q 024565          156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWR--GGRAASFNIIPSS----TGAAKAVGKVLPALNGK  229 (265)
Q Consensus       156 ~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~--~~~~~a~n~~p~~----~~~~~~~~~~l~e~~~~  229 (265)
                      +|+++++|+||+++..+++...++++++||.+..+.... ....  +. .+.+|+.||.    |.|.+|+.|++..+ ..
T Consensus       118 ~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~-~~~~~~~~-~~~~n~~~Y~~~~~HrH~pEi~~~l~~~-~~  194 (313)
T PRK11863        118 PTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMI-AAYEAAPD-GKAPAFRLYGLGLAHKHLPEMQAHAGLA-RR  194 (313)
T ss_pred             HHHHHHHHHHHHHcCCcccCceEEEEEccccccCCccch-HHHhhhhh-hhccCeeeccCCcCCcchHHHHHHhccc-cC
Confidence            999999999999987776654589999987755544322 1222  22 4667888887    55778888877655 35


Q ss_pred             eeEEEEEeeeCceEEEEEEEEe---cCCCCHHHHHHHhC
Q 024565          230 LTGMAFRVPTVDVSVVDLTVRL---EKDASYDEIKAAIK  265 (265)
Q Consensus       230 v~~~~~~vP~~~G~~~~~~v~~---~~~~~~e~v~~~~~  265 (265)
                      +.|+|+.+|++|||+.|+|+++   +++++.+|++++|+
T Consensus       195 ~~F~Phl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~  233 (313)
T PRK11863        195 PIFTPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALA  233 (313)
T ss_pred             cEEEeeEccccCcEEEEEEEEecccCCCCCHHHHHHHHH
Confidence            8899999999999999999997   88899999999874

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=100.00  E-value=1e-36  Score=266.68  Aligned_cols=215  Identities=12%  Similarity=0.071  Sum_probs=167.9

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      .||+|+|+ ||+|.|++|+|.+||++|++.+++.+. .         +                              ..
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-~---------~------------------------------~~   41 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-K---------D------------------------------AA   41 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-c---------C------------------------------cC
Confidence            58999999 999999999999999999999987531 0         0                              01


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeee---ccccccCCCCeEEcCCCch
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGV---NEHEYKPELNIVSNASCTT  156 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~v---n~~~~~~~~~~Va~p~C~~  156 (265)
                      +.+++ +  .++|+||+|+|++.+.++++.+.++|++.+.+|++   +++.|..+||+   +++.++ .+++|+|||||+
T Consensus        42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~-~a~lIAnPgC~a  117 (310)
T TIGR01851        42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIR-NSKRIANPGCYP  117 (310)
T ss_pred             CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhc-cCCEEECCCCHH
Confidence            12222 1  46899999999999999999999999965556887   34677888889   456777 489999999999


Q ss_pred             hhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCccc----CCccCCCceeecC----CChhhHHHhhccCCCC
Q 024565          157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWR----GGRAASFNIIPSS----TGAAKAVGKVLPALNG  228 (265)
Q Consensus       157 ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~----~~~~~a~n~~p~~----~~~~~~~~~~l~e~~~  228 (265)
                      |+++++|+||+++..+++..+++++++||.+..+..... ...    +. ...+|+.||.    |.|.+|+.+.+... .
T Consensus       118 Ta~~LaL~PL~~~~li~~~~~~~~~a~SG~SGAGr~~~~-~l~~q~~~~-e~~~~~~~Y~~~~~HrH~pEi~q~l~~~-~  194 (310)
T TIGR01851       118 TGFIALMRPLVEAGILPADFPITINAVSGYSGGGKAMIA-DYEQGSADN-PSLQPFRIYGLALTHKHLPEMRVHSGLA-L  194 (310)
T ss_pred             HHHHHHHHHHHHcCCccccceEEEEeccccCccChhhhH-Hhhhcccch-hhccCceeccCCCCCCcHHHHHHHhCCC-C
Confidence            999999999999977876556999999996544433221 111    11 2345566665    56778888877654 4


Q ss_pred             ceeEEEEEeeeCceEEEEEEEEe---cCCCCHHHHHHHhC
Q 024565          229 KLTGMAFRVPTVDVSVVDLTVRL---EKDASYDEIKAAIK  265 (265)
Q Consensus       229 ~v~~~~~~vP~~~G~~~~~~v~~---~~~~~~e~v~~~~~  265 (265)
                      ++.|+||.+|++||+++|+|+++   ++.++.+|++++|+
T Consensus       195 ~v~FtPhl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~  234 (310)
T TIGR01851       195 PPIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALA  234 (310)
T ss_pred             CEEEEeEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHH
Confidence            59999999999999999999999   88899999998874

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=100.00  E-value=1.3e-36  Score=273.88  Aligned_cols=235  Identities=16%  Similarity=0.184  Sum_probs=171.9

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecccc-ChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      +||+|+|+ |++|++++|+|.+||+++++++.++.. .++.+.      +.++++. .         .    ..+.+ ..
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~------~~~~~l~-~---------~----~~~~~-~~   59 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVS------EVHPHLR-G---------L----VDLNL-EP   59 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChH------HhCcccc-c---------c----CCcee-ec
Confidence            58999999 999999999999999999998855432 232221      2232221 0         0    01111 11


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CC-------------------CCceEEeeecc
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SK-------------------DAPMFVVGVNE  139 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~-------------------~~~~~v~~vn~  139 (265)
                      .+++++  . .++|+||+|+|++.+.+++++++++|++.+.+|++   ++                   +.|..+|++|+
T Consensus        60 ~~~~~~--~-~~~DvVf~alP~~~s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~  136 (346)
T TIGR01850        60 IDEEEI--A-EDADVVFLALPHGVSAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHR  136 (346)
T ss_pred             CCHHHh--h-cCCCEEEECCCchHHHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCH
Confidence            233333  1 37999999999999999999999999844445776   21                   35566778999


Q ss_pred             ccccCCCCeEEcCCCchhhhHhHHHHHHHhcCce--EEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhh
Q 024565          140 HEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAK  217 (265)
Q Consensus       140 ~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~--~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~  217 (265)
                      ++++. +++|+||||++|+++++|+||+++++++  +..+++++++||+++......+..+..++..++|+.|  |.|.+
T Consensus       137 ~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~~~~~~~y~~~~--h~h~~  213 (346)
T TIGR01850       137 EEIKG-ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFPEVNENLRPYKVTG--HRHTP  213 (346)
T ss_pred             HHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccchhhcCCeeeeccCC--cCcHH
Confidence            99985 8899999999999999999999998886  5778888888888654432222233333344555554  45777


Q ss_pred             HHHhhccCCC---CceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          218 AVGKVLPALN---GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       218 ~~~~~l~e~~---~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |+.+.+..+.   .+++|+|+++|++|||+.++|++++++++.++++++|+
T Consensus       214 Ei~~~l~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~  264 (346)
T TIGR01850       214 EIEQELGRLAGGKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYE  264 (346)
T ss_pred             HHHHHHHHhcCCCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHH
Confidence            7777765542   25999999999999999999999999999999999873

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=100.00  E-value=2.7e-36  Score=271.68  Aligned_cols=235  Identities=18%  Similarity=0.217  Sum_probs=175.8

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||+|+|+ |++|++++++|.+||++++++++++....+.+.      +.++.+.        +  +    .... +. 
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~------~~~~~~~--------~--~----~~~~-~~-   59 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLS------DVHPHLR--------G--L----VDLV-LE-   59 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchH------HhCcccc--------c--c----cCce-ee-
Confidence            589999999 999999999999999999999998542332221      1122121        0  0    0011 11 


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC-C--C-C------------------CceEEeeecc
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-S--K-D------------------APMFVVGVNE  139 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~-~--~-~------------------~~~~v~~vn~  139 (265)
                       +.++..+  .++|+||+|+|++.+.+.++.++++|+..+..|++ +  + +                  .|..+|++|+
T Consensus        60 -~~~~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~  136 (343)
T PRK00436         60 -PLDPEIL--AGADVVFLALPHGVSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNR  136 (343)
T ss_pred             -cCCHHHh--cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCH
Confidence             2222222  56999999999999999999999999843334766 1  2 2                  4667788999


Q ss_pred             ccccCCCCeEEcCCCchhhhHhHHHHHHHhcCce--EEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhh
Q 024565          140 HEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAK  217 (265)
Q Consensus       140 ~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~--~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~  217 (265)
                      +++++ +++|+||||++|+++++|+||++.++|+  +..+++++++||+++......+..+..+...+||++|+  .|.+
T Consensus       137 ~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~~~~~~~y~~~~h--~h~~  213 (343)
T PRK00436        137 EEIKG-ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEVNENLRPYKVGGH--RHTP  213 (343)
T ss_pred             HHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccchhhcCCeeecccCCC--CCHH
Confidence            99985 7999999999999999999999998887  78899999999986543222222233344456777664  4678


Q ss_pred             HHHhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          218 AVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       218 ~~~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |+.+.+..+.+.++|+|+++|++|||+.+++++|+++++.+|++++|+
T Consensus       214 Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~  261 (343)
T PRK00436        214 EIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYE  261 (343)
T ss_pred             HHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHH
Confidence            887777655336999999999999999999999999999999999883

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=100.00  E-value=7.9e-36  Score=266.58  Aligned_cols=231  Identities=16%  Similarity=0.191  Sum_probs=175.5

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEE---EEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVEL---VAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      +||||+|+ |.+|++++++|.+|++|.+   ....+.+                          ++|+.+.++|+.+.+.
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~--------------------------s~g~~~~f~~~~~~v~   54 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQ--------------------------LGQAAPSFGGTTGTLQ   54 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchh--------------------------hCCCcCCCCCCcceEE
Confidence            48999999 9999999999998877753   2222221                          1222333444444342


Q ss_pred             ecCCCCCC-CcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE---cCC--CCCCceEEeeeccccccCC--CCe--E
Q 024565           80 GVRNPEEI-PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII---SAP--SKDAPMFVVGVNEHEYKPE--LNI--V  149 (265)
Q Consensus        80 ~~~~~~~~-~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi---s~~--~~~~~~~v~~vn~~~~~~~--~~~--V  149 (265)
                         +.++. +|  .++|+||+|+|..+++++.+.+.++|+..+||   |++  ++|+|++||++|++.++..  ..+  |
T Consensus        55 ---~~~~~~~~--~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~i  129 (366)
T TIGR01745        55 ---DAFDIDAL--KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTF  129 (366)
T ss_pred             ---cCcccccc--cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeE
Confidence               23222 23  67999999999999999999999999433777   333  4679999999999887742  346  8


Q ss_pred             EcCCCchhhhHhHHHHHHHhcCceEEEEEEEeecccccc------------ccC--------C-----------------
Q 024565          150 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVD--------G-----------------  192 (265)
Q Consensus       150 a~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~------------~~d--------~-----------------  192 (265)
                      +||+|+++.++++|+||++.++|+++.++|+|++||++.            ..+        +                 
T Consensus       130 anPNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~  209 (366)
T TIGR01745       130 VGGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRS  209 (366)
T ss_pred             ECcCHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhcccccccccc
Confidence            999999999999999999999999999999999999852            011        0                 


Q ss_pred             CCCCcccCCccCCCceeecCC-----ChhhH-------HHhhccC-CCCceeEEEEEeeeCceEEEEEEEEecCCCCHHH
Q 024565          193 PSSKDWRGGRAASFNIIPSST-----GAAKA-------VGKVLPA-LNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDE  259 (265)
Q Consensus       193 ~~~~~~~~~~~~a~n~~p~~~-----~~~~~-------~~~~l~e-~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~  259 (265)
                      .......|+++++||++|+..     |+.+|       .+|++.. -+.++++||+||||++||..+++++|+++++.++
T Consensus       210 ~~~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~  289 (366)
T TIGR01745       210 GELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLET  289 (366)
T ss_pred             CCCCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHH
Confidence            011344678999999999984     44444       4566643 2345999999999999999999999999999999


Q ss_pred             HHHHhC
Q 024565          260 IKAAIK  265 (265)
Q Consensus       260 v~~~~~  265 (265)
                      ++++|+
T Consensus       290 i~~~L~  295 (366)
T TIGR01745       290 IEEIIR  295 (366)
T ss_pred             HHHHHH
Confidence            999873

>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.8e-37  Score=258.35  Aligned_cols=238  Identities=67%  Similarity=1.074  Sum_probs=222.5

Q ss_pred             CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCCCCCCcccccccEEEEecCCc
Q 024565           25 RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF  104 (265)
Q Consensus        25 ~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~~  104 (265)
                      ..+++++++++++.++.++.|+++||++||+|. +.++.+++ .+.++|+.+.++++.+|.+++|...+.|+|+++|+.+
T Consensus         8 ~~~v~vv~indpfi~~~~~~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g~~~v~e~tg~f   85 (285)
T KOG0657|consen    8 RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKGADIVVESTGVF   85 (285)
T ss_pred             cCCcccccccCcccccccccccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCccccccceeEeeccccc
Confidence            445999999999889999999999999999999 77666666 4556799999999999999999999999999999999


Q ss_pred             ccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeecc
Q 024565          105 TDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT  184 (265)
Q Consensus       105 ~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~s  184 (265)
                      ++.+.+..++++|+|++++|+++.|.|++|+|+|.+.+.+...+|||.+|++.|++|..+.++.+|||.++.+|++|+.+
T Consensus        86 ~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~EgLMtTvha~t  165 (285)
T KOG0657|consen   86 TTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIMEGLMTTVHAIT  165 (285)
T ss_pred             cccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccccccccceeeec
Confidence            99999999999999999999999999999999999999875668999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHh
Q 024565          185 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAI  264 (265)
Q Consensus       185 g~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~  264 (265)
                      ++|+++|+|+...|+.+|...+|++|...|.++++.+.+||++++++.++++||+. ....+++++++++.+.|+++++.
T Consensus       166 atQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvv  244 (285)
T KOG0657|consen  166 ATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVV  244 (285)
T ss_pred             cccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeecccccccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999 99999999999999999999876


Q ss_pred             C
Q 024565          265 K  265 (265)
Q Consensus       265 ~  265 (265)
                      +
T Consensus       245 k  245 (285)
T KOG0657|consen  245 K  245 (285)
T ss_pred             H
Confidence            3

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=100.00  E-value=1e-35  Score=268.76  Aligned_cols=235  Identities=21%  Similarity=0.259  Sum_probs=176.2

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE-eccccChhhhhhheeecccCCcccccceeeeCCceEEECC--EEE
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAV-NDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE--KPV   76 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~   76 (265)
                      |||+||+|+|+ |++|++++++|.+||+++++.+ .+.+..++.+.      +.++...      .++  +  .+  ..+
T Consensus         1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~------~~~~~~~------~~~--~--~~~~~~~   64 (349)
T PRK08664          1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYG------EAVRWQL------DGP--I--PEEVADM   64 (349)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCccc------ccccccc------ccc--c--cccccce
Confidence            78899999999 9999999999999999999999 55432332221      1111100      000  0  00  112


Q ss_pred             EEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeecccccc----------
Q 024565           77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYK----------  143 (265)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~----------  143 (265)
                      .+ ...+++.+    .++|+||+|+|++.+.++++.+.+.|++.++.|++   .++.|..++++|.+.+.          
T Consensus        65 ~v-~~~~~~~~----~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~  139 (349)
T PRK08664         65 EV-VSTDPEAV----DDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRG  139 (349)
T ss_pred             EE-EeCCHHHh----cCCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhcc
Confidence            22 22344443    47999999999999999999999999965556776   23466778888865331          


Q ss_pred             CCCCeEEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC----CChhhHH
Q 024565          144 PELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS----TGAAKAV  219 (265)
Q Consensus       144 ~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~----~~~~~~~  219 (265)
                      ++.++|+|||||+|+++++|+||++ ++|+++.+++++++||+++...     .   ...+++|++||.    |.|.+|+
T Consensus       140 ~~~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~~-----~---~~~~~~N~~p~~~~~ehrh~~Ei  210 (349)
T PRK08664        140 WDGFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPGV-----P---SMDIVDNVIPYIGGEEEKIEKET  210 (349)
T ss_pred             CCceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCcccc-----h---hhhhhcCcccccCchhhhhhHHH
Confidence            1257999999999999999999999 8999999999999998765322     1   235899999988    4456777


Q ss_pred             HhhccCC--------CCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          220 GKVLPAL--------NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       220 ~~~l~e~--------~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      .+++...        ..+++|+|++||++|||++++|++++++++.+|++++|+
T Consensus       211 ~~~l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~  264 (349)
T PRK08664        211 LKILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALE  264 (349)
T ss_pred             HHHhhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHH
Confidence            7776543        556999999999999999999999999999999999874

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=100.00  E-value=3.9e-35  Score=260.02  Aligned_cols=232  Identities=24%  Similarity=0.309  Sum_probs=190.3

Q ss_pred             EEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCC
Q 024565            6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP   84 (265)
Q Consensus         6 vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~   84 (265)
                      |||+|+|+||+.++|.+.++|++++++|++...+ ...+++++.||++|+.+. ..+..++        ..+.+.  .++
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~-~~~~~~~--------~~l~v~--g~~   69 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEE-FIPRFEE--------AGIEVA--GTL   69 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCC-cceEecc--------CceEec--CCH
Confidence            6999999999999999998999999999995322 236777777888773332 1222111        123332  345


Q ss_pred             CCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC--CceEEeeeccccccCCCCeEEcCCCchhhhHhH
Q 024565           85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNEHEYKPELNIVSNASCTTNCLAPL  162 (265)
Q Consensus        85 ~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~--~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~~  162 (265)
                      +++.   .++|+|++|||.+.+.+..+.+++.|+|.+++|++..+  .+.|++++|.+.+.+ .++|+|.||+|||+++.
T Consensus        70 eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~-~~~vs~aSCtTn~Lap~  145 (333)
T TIGR01546        70 EDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALG-KDYVRVVSCNTTGLVRT  145 (333)
T ss_pred             HHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCc-CceEEecCchHhhHHHH
Confidence            6662   57999999999999999999999999998989999765  468999999998875 45999999999999999


Q ss_pred             HHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeec-CC---ChhhHHHhhccCCCCceeEEEEEee
Q 024565          163 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPS-ST---GAAKAVGKVLPALNGKLTGMAFRVP  238 (265)
Q Consensus       163 L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~-~~---~~~~~~~~~l~e~~~~v~~~~~~vP  238 (265)
                      +++|.++|||+.+.+|++|+ ++.+.        +++.+|  +.|++|. ..   .+++.+.+++|+++  ++.+++|||
T Consensus       146 ~~~L~~~fGI~~~~~Ttvh~-t~dq~--------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~AvrVP  212 (333)
T TIGR01546       146 LNAINDYSKVDKVRAVMVRR-AADPN--------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFVVP  212 (333)
T ss_pred             HHHHHHhcCeEEEEEEEEee-cCChh--------hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEEeC
Confidence            99999999999999999997 54442        456665  6899998 22   45899999999998  999999999


Q ss_pred             eCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          239 TVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       239 ~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      +..+|+++++++++++++.|||+++|+
T Consensus       213 t~~vs~~dl~v~l~~~~t~eeV~~~l~  239 (333)
T TIGR01546       213 TTLMHVHSIMVELKKPVTKDDIIDILE  239 (333)
T ss_pred             CCCcEEEEEEEEECCCCCHHHHHHHHH
Confidence            999999999999999999999999884

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=100.00  E-value=4.1e-35  Score=263.99  Aligned_cols=233  Identities=20%  Similarity=0.260  Sum_probs=176.2

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECC--EEEEEE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE--KPVTVF   79 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~   79 (265)
                      +||+|+|+ |++|++++++|.+||+++++++.+...+ ++.+.      ..++.+.      .++  +  .+  ..+.+ 
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~------~~~~~~~------~~~--~--~~~~~~~~~-   63 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYG------EAVKWIE------PGD--M--PEYVRDLPI-   63 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcch------hhccccc------cCC--C--ccccceeEE-
Confidence            58999999 9999999999999999999999754322 22221      1122110      000  0  00  11222 


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccC---------CCC
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKP---------ELN  147 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~---------~~~  147 (265)
                      ...+++.  |  .++|+||+|+|++.+.++.+.+.++|++.++.|++   +++.|.++|++|.+.+..         +++
T Consensus        64 ~~~~~~~--~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~  139 (341)
T TIGR00978        64 VEPEPVA--S--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGF  139 (341)
T ss_pred             EeCCHHH--h--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCcc
Confidence            2223332  2  57999999999999999999999999965555777   355788888887653321         357


Q ss_pred             eEEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCC----ChhhHHHhhc
Q 024565          148 IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST----GAAKAVGKVL  223 (265)
Q Consensus       148 ~Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~----~~~~~~~~~l  223 (265)
                      +|+|||||+|+++++|+||+++++|+++.+++++++||+++...     .   .+.+++|++||..    .|.+|+.+++
T Consensus       140 iVanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~-----~---~~~~~~Ni~py~~~~ehrh~~Ei~~il  211 (341)
T TIGR00978       140 IVTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGV-----P---SMDILDNIIPHIGGEEEKIERETRKIL  211 (341)
T ss_pred             EEeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCC-----c---cchhhCCeEecCcHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999865421     1   2468999999984    4567888888


Q ss_pred             cCCCC--------ceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          224 PALNG--------KLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       224 ~e~~~--------~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      +.+.+        +++|+|++||++|||++++|++++++++.++++++|+
T Consensus       212 ~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~  261 (341)
T TIGR00978       212 GKLENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALK  261 (341)
T ss_pred             CccccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHH
Confidence            77632        5999999999999999999999999999999999884

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=5.6e-35  Score=262.52  Aligned_cols=233  Identities=27%  Similarity=0.345  Sum_probs=177.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeec--ccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYD--SVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+||||+|+|+||+.+++++.++|++||+++++..  .++.+|+.++.  ..++.++ ....       .+++..+.+. 
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~--~~~~~~la~~~G~~~~~~~~-~~~~-------~~~~~~i~V~-   69 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK--PDYEARVAVEKGYPLYVADP-EREK-------AFEEAGIPVA-   69 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC--hHHHHHHHHhcCCCccccCc-cccc-------cccCCceEEc-
Confidence            48999999999999999999999999999999863  44444444321  1233332 1100       0112223342 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC-CCCCc--eEEeeeccccccCCCCeEEcCCCchh
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-SKDAP--MFVVGVNEHEYKPELNIVSNASCTTN  157 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~-~~~~~--~~v~~vn~~~~~~~~~~Va~p~C~~t  157 (265)
                       .+++++ +  .++|+||+|||.+.+.+.++.++++|+ ++|+++. ..++|  .++|++|.+.+.+ .++|+||+|+||
T Consensus        70 -~~~~el-~--~~vDVVIdaT~~~~~~e~a~~~~~aGk-~VI~~~~~~~~~~~~~~v~~vN~~~~~~-~~~v~~~sCtT~  143 (341)
T PRK04207         70 -GTIEDL-L--EKADIVVDATPGGVGAKNKELYEKAGV-KAIFQGGEKAEVAGVSFNALANYEEALG-KDYVRVVSCNTT  143 (341)
T ss_pred             -CChhHh-h--ccCCEEEECCCchhhHHHHHHHHHCCC-EEEEcCCCCCCCCCCcEEeeECHHHhCC-CCcEEccChHHH
Confidence             234444 2  579999999999999999999999995 4666544 23322  4799999998874 458999999999


Q ss_pred             hhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC----CChhhHHHhhccCCCCceeEE
Q 024565          158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS----TGAAKAVGKVLPALNGKLTGM  233 (265)
Q Consensus       158 a~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~----~~~~~~~~~~l~e~~~~v~~~  233 (265)
                      +++++|+||+++|||+++.+|++|+.|+       +  .++  .|....|++|+.    ..+.+++.+++|++.  ++.+
T Consensus       144 ~l~~~l~~L~~~fgI~~~~vTtv~a~td-------~--~~~--~r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~~~  210 (341)
T PRK04207        144 GLCRTLCALDRAFGVKKVRATLVRRAAD-------P--KEV--KRGPINAIVPDPVTVPSHHGPDVKTVLPDLD--ITTM  210 (341)
T ss_pred             HHHHHHHHHHHhcCceEEEEEEEEcCCC-------c--chh--hHHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eEEE
Confidence            9999999999999999999999999773       1  122  245667777641    223478899999997  9999


Q ss_pred             EEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          234 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       234 ~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++|||+++||+.+++++|+++++.||++++|+
T Consensus       211 avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~  242 (341)
T PRK04207        211 AVKVPTTLMHMHSVNVELKKPVTKEEVLEALE  242 (341)
T ss_pred             EEEcCCCCceEEEEEEEECCCCCHHHHHHHHH
Confidence            99999999999999999999999999999874

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=100.00  E-value=1.2e-34  Score=262.99  Aligned_cols=231  Identities=13%  Similarity=0.084  Sum_probs=161.7

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      ++||+|+|+ |++|++++|+|.+||+++++.+.+....++.+.      ..++++.               +.....+. 
T Consensus        38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~------~~~~~l~---------------~~~~~~~~-   95 (381)
T PLN02968         38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFG------SVFPHLI---------------TQDLPNLV-   95 (381)
T ss_pred             ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCch------hhCcccc---------------Ccccccee-
Confidence            579999999 999999999999999999999987643443211      1122221               00111111 


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCC--------Cce--------EEe---eecc
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKD--------APM--------FVV---GVNE  139 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~--------~~~--------~v~---~vn~  139 (265)
                       +.+..+|  .++|+||+|+|++.+.++++.+ +.|++.+.+|++   +++        .|.        ++|   ++|+
T Consensus        96 -~~~~~~~--~~~DvVf~Alp~~~s~~i~~~~-~~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r  171 (381)
T PLN02968         96 -AVKDADF--SDVDAVFCCLPHGTTQEIIKAL-PKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQR  171 (381)
T ss_pred             -cCCHHHh--cCCCEEEEcCCHHHHHHHHHHH-hCCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCH
Confidence             1222223  5799999999999999999985 788754556777   222        232        233   3577


Q ss_pred             ccccCCCCeEEcCCCchhhhHhHHHHHHHhcCc--eEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC---CC
Q 024565          140 HEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TG  214 (265)
Q Consensus       140 ~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i--~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~---~~  214 (265)
                      ++++ .+++|+|||||+|+++++|+||+++++|  ++..+.+++++||+++.....++    +. +...|+.||.   |.
T Consensus       172 ~~i~-~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l----~~-e~~~n~~~y~~~~h~  245 (381)
T PLN02968        172 EEIK-SARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANL----YT-EIAEGIGAYGVTRHR  245 (381)
T ss_pred             HHhc-CCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhh----HH-HhcccceeeccCCCC
Confidence            7787 4889999999999999999999999999  56777888888887654432211    11 2333455555   34


Q ss_pred             hhhHHHhhccCC---CCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          215 AAKAVGKVLPAL---NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       215 ~~~~~~~~l~e~---~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |.+|+.+.+..+   +.+++|||+++|++|||+.++|++++++++.+|++++|+
T Consensus       246 h~pEie~~~~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~  299 (381)
T PLN02968        246 HVPEIEQGLADAAGSKVTPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLK  299 (381)
T ss_pred             CcchHHHHHHHHhCCCCCEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHH
Confidence            445543322111   235999999999999999999999999999999999874

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=100.00  E-value=1e-33  Score=224.98  Aligned_cols=149  Identities=56%  Similarity=0.993  Sum_probs=135.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN   83 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   83 (265)
                      |||||+|||+|||.++|++..+|++|+++|++...+.+.++|+++|||+||.|. +.+..+++ .|.++|+.++++++.+
T Consensus         1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~~-~l~v~G~~I~~~~~~d   78 (151)
T PF00044_consen    1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFP-GDVEVDDD-GLIVNGKKIKVTEERD   78 (151)
T ss_dssp             EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGS-SHEEEETT-EEEETTEEEEEEHTSS
T ss_pred             CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcccccccee-cccccccc-eeEeecccccchhhhh
Confidence            699999999999999999999999999999999878999999999999999998 77666665 7999999999999899


Q ss_pred             CCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC--CceEEeeeccccccCCCCeEEcCCC
Q 024565           84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNEHEYKPELNIVSNASC  154 (265)
Q Consensus        84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~--~~~~v~~vn~~~~~~~~~~Va~p~C  154 (265)
                      |++++|...++|+|++|||.+.+++.++.++++|+|+|++|++.++  .|++|+|+|.+.+.++.++||++||
T Consensus        79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC  151 (151)
T PF00044_consen   79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC  151 (151)
T ss_dssp             GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred             hcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence            9999999999999999999999999999999999999999999655  8999999999999975599999999

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=99.97  E-value=5.2e-30  Score=204.05  Aligned_cols=148  Identities=55%  Similarity=0.942  Sum_probs=134.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN   83 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   83 (265)
                      +||||+|+|+||+.+++.+.+++++++++++++ .+.+.++||++||++||.|. .++..+++ .+.++|+.+++++..+
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~   77 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERD   77 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCC
Confidence            589999999999999999999999999999996 57899999999999999998 66665555 6889999999998889


Q ss_pred             CCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccCCCCeEEcCCC
Q 024565           84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASC  154 (265)
Q Consensus        84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~~~~~Va~p~C  154 (265)
                      |.+++|.+.++|+|+|||+.+.+++..+.++++|+|+|++|++.++ .+++|+|+|.+.++++.++|||.||
T Consensus        78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC  149 (149)
T smart00846       78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC  149 (149)
T ss_pred             hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence            9999999999999999999999999999999999999999999765 4589999999999865569999999

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]

Probab=99.94  E-value=7.2e-27  Score=193.71  Aligned_cols=229  Identities=14%  Similarity=0.153  Sum_probs=163.8

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      .+|||.+|+ ||.|+.+++++.+||.+|+..+.++...++.+.       .|++..           +...  .+..   
T Consensus        19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~-------~ytk~e-----------iqy~--~lst---   75 (340)
T KOG4354|consen   19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLE-------VYTKLE-----------IQYA--DLST---   75 (340)
T ss_pred             CceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCccc-------Ccchhh-----------eeec--ccch---
Confidence            589999999 999999999999999999999998865554321       122221           1000  0111   


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE--cCCCCCCc--eEEee---ec-cccccCCCCeEEcCC
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAPSKDAP--MFVVG---VN-EHEYKPELNIVSNAS  153 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi--s~~~~~~~--~~v~~---vn-~~~~~~~~~~Va~p~  153 (265)
                      .|...+.. ...+|..+.++|..+.+.++.......-|..+|  |++....|  .++||   +| +++|++ ++.|+|||
T Consensus        76 ~D~~klee-~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~n-a~~iaNPG  153 (340)
T KOG4354|consen   76 VDAVKLEE-PHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIKN-ARLIANPG  153 (340)
T ss_pred             hhHHHhhc-CCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHhh-hhhccCCC
Confidence            12211110 135788889999988877776655544444444  77743344  68887   57 788985 89999999


Q ss_pred             CchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC---CChhhHHHhhccCCCCce
Q 024565          154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TGAAKAVGKVLPALNGKL  230 (265)
Q Consensus       154 C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~---~~~~~~~~~~l~e~~~~v  230 (265)
                      ||+|.+.+.|.||.+......    .+.++||.+.++.+++.  ...-..++.|++||.   |-|.+|+.+-   +...+
T Consensus       154 CYaTgsQl~l~Pllk~i~g~p----~ifgvSGySGAGtkpsp--kNd~~~l~nnlipY~ltdHiHerEIs~r---~k~~V  224 (340)
T KOG4354|consen  154 CYATGSQLPLVPLLKAILGKP----EIFGVSGYSGAGTKPSP--KNDYSELANNLIPYGLTDHIHEREISQR---SKVTV  224 (340)
T ss_pred             cccccCcccchHHHHHhcCCc----ceeeeccccCCCCCCCC--ccCHHHHhcCCccccccccchhHhHHHh---hCCce
Confidence            999999999999998654432    25677777666655543  233456889999998   4455665553   23469


Q ss_pred             eEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          231 TGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       231 ~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      .|+||..|+|+|+..|+++.+++.++.||+.+.|+
T Consensus       225 aF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk  259 (340)
T KOG4354|consen  225 AFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYK  259 (340)
T ss_pred             eechhHHHHhhhceEEEEEeecCcccHHHHHHHHH
Confidence            99999999999999999999999999999999874

>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=99.90  E-value=1.1e-23  Score=176.16  Aligned_cols=236  Identities=18%  Similarity=0.229  Sum_probs=171.6

Q ss_pred             CCccEEE-EEcc-ChhHHHHHHHHHcCCCeEEEEEecccc-ChhhhhhheeecccCCcccccceeeeCCceEEECCEEEE
Q 024565            1 MGKVKIG-INGF-GRIGRLVARVILQRDDVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT   77 (265)
Q Consensus         1 m~~i~vg-I~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~   77 (265)
                      |+-.|+| |+|+ |.+|++.+.+|.+||++++..+..... .+.+.+       ..++|++...       ++-.-+++.
T Consensus         1 Ma~kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya-------~a~~wkqt~~-------lp~~~~e~~   66 (361)
T KOG4777|consen    1 MALKKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYA-------FAGNWKQTDL-------LPESAHEYT   66 (361)
T ss_pred             CCcccccceeeccchhHHHHHHHhccCCcceeeeecccccccCCceE-------ecccchhccc-------ccchhhhhh
Confidence            6666777 9999 999999999999999999888744332 343321       1345542110       110112233


Q ss_pred             EEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC-----CCCCceEEeeeccccccC--------
Q 024565           78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-----SKDAPMFVVGVNEHEYKP--------  144 (265)
Q Consensus        78 ~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~-----~~~~~~~v~~vn~~~~~~--------  144 (265)
                      + .+.+++.|    .++|+||+.++...+.+.-+.+.++|.  +++|..     .+++|++||++|+++++.        
T Consensus        67 V-~ec~~~~F----~ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~  139 (361)
T KOG4777|consen   67 V-EECTADSF----NECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTG  139 (361)
T ss_pred             H-hhcChhhc----ccccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccC
Confidence            3 33567777    789999999999999999999999998  777655     245999999999987762        


Q ss_pred             ---CCCeEEcCCCchhhhHhHHHHHHHhcC-ceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChh----
Q 024565          145 ---ELNIVSNASCTTNCLAPLAKVIHDKFG-IVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAA----  216 (265)
Q Consensus       145 ---~~~~Va~p~C~~ta~~~~L~pL~~~~~-i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~----  216 (265)
                         ..-+|+|++|.+..+..+|+||+.+|| |.+..++++|+.||++-.-..+       +-++.+|++|++.+..    
T Consensus       140 k~~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~apgv~-------~vdildnilp~iggee~k~e  212 (361)
T KOG4777|consen  140 KMGKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAAPGVE-------LVDILDNILPGIGGEENKFE  212 (361)
T ss_pred             CCCCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcCCCch-------HHHHHHhhcCCCCccchhhh
Confidence               356999999999999999999999995 8888889999999975321111       2246778899886642    


Q ss_pred             hHHHhhccCCC-----------CceeEEEEEeeeCceEEEEEEEEecCC--CCHHHHHHHh
Q 024565          217 KAVGKVLPALN-----------GKLTGMAFRVPTVDVSVVDLTVRLEKD--ASYDEIKAAI  264 (265)
Q Consensus       217 ~~~~~~l~e~~-----------~~v~~~~~~vP~~~G~~~~~~v~~~~~--~~~e~v~~~~  264 (265)
                      .|..++|...+           ..++..|-|+|+..||+..+.++|+-+  .+.+++..++
T Consensus       213 wet~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l  273 (361)
T KOG4777|consen  213 WETAKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLL  273 (361)
T ss_pred             HHHHHhhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHH
Confidence            34455554332           136788999999999999999999844  3456766554

>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=99.78  E-value=1.8e-18  Score=138.95  Aligned_cols=106  Identities=66%  Similarity=0.986  Sum_probs=99.5

Q ss_pred             hHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEee
Q 024565          159 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP  238 (265)
Q Consensus       159 ~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP  238 (265)
                      |++.+++|+++|||+++.+|++|+.+..|..+|++. .+++.||..+.|++|..+++++++.+++|+|+++++.+++|||
T Consensus         1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP   79 (157)
T PF02800_consen    1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP   79 (157)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred             CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence            689999999999999999999999999999999976 8999999999999999999999999999999999999999999


Q ss_pred             eCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          239 TVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       239 ~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      +..||+++++++++++++.|||+++|+
T Consensus        80 t~~~s~~dl~~~l~k~~t~eeV~~~~~  106 (157)
T PF02800_consen   80 TPNVSLHDLTVELEKPVTKEEVNEALK  106 (157)
T ss_dssp             SSSEEEEEEEEEESSSS-HHHHHHHHH
T ss_pred             ecccCceEEEEecccchhhhhhhhhhh
Confidence            999999999999999999999999874

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=99.69  E-value=5.1e-17  Score=142.44  Aligned_cols=152  Identities=20%  Similarity=0.182  Sum_probs=109.9

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+++||||+|.|.+|..++..+.+.|+++++++++...+...++.-    .            +.|         ++.+.
T Consensus         2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A----~------------~~G---------i~~~~   56 (302)
T PRK08300          2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA----R------------RLG---------VATSA   56 (302)
T ss_pred             CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH----H------------HcC---------CCccc
Confidence            5679999999999999999999999999999999874332111100    0            001         00000


Q ss_pred             cCCCC----CCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE-cCCCCCCceEEeeeccccccC--CCCeEEcCC
Q 024565           81 VRNPE----EIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII-SAPSKDAPMFVVGVNEHEYKP--ELNIVSNAS  153 (265)
Q Consensus        81 ~~~~~----~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi-s~~~~~~~~~v~~vn~~~~~~--~~~~Va~p~  153 (265)
                       .+.+    +.+|  +++|+||+|||+..|.++++.++++|+  .++ ..+....|++||++|.+++..  +.++|+||+
T Consensus        57 -~~ie~LL~~~~~--~dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~  131 (302)
T PRK08300         57 -EGIDGLLAMPEF--DDIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGG  131 (302)
T ss_pred             -CCHHHHHhCcCC--CCCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECcc
Confidence             1111    1122  579999999999999999999999997  444 222236899999999887764  358999999


Q ss_pred             CchhhhHhHHHHHHHhcCceEEEEEEEeecc
Q 024565          154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT  184 (265)
Q Consensus       154 C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~s  184 (265)
                      |.++.++.+|+|+.+. .+.+.. .+++++|
T Consensus       132 ~ati~~v~Al~~v~~~-~~~eIv-at~~s~s  160 (302)
T PRK08300        132 QATIPIVAAVSRVAPV-HYAEIV-ASIASKS  160 (302)
T ss_pred             HHHHHHHHHhcccCcC-ceeeee-eeehhhc
Confidence            9999999999996543 555543 6778887

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=99.67  E-value=6.4e-17  Score=124.75  Aligned_cols=114  Identities=26%  Similarity=0.331  Sum_probs=82.9

Q ss_pred             EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecccc-ChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ||+|+|+ |++|++++++|.+||+++++.+.+++. .+..+.      ..++.+.        +      ...+.+.. .
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~------~~~~~~~--------~------~~~~~~~~-~   59 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS------EVFPHPK--------G------FEDLSVED-A   59 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH------HTTGGGT--------T------TEEEBEEE-T
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee------hhccccc--------c------ccceeEee-c
Confidence            7999998 999999999999999999999998875 343332      2233221        0      11222321 2


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeecccccc
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYK  143 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~  143 (265)
                      +.+++    .++|+||+|+|++.+.++++.+++.|++.+..|++   .++.|..+|++|+++++
T Consensus        60 ~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~~ViD~s~~~R~~~~~~~~~pevn~~~i~  119 (121)
T PF01118_consen   60 DPEEL----SDVDVVFLALPHGASKELAPKLLKAGIKVIDLSGDFRLDDDVPYGLPEVNREQIK  119 (121)
T ss_dssp             SGHHH----TTESEEEE-SCHHHHHHHHHHHHHTTSEEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred             chhHh----hcCCEEEecCchhHHHHHHHHHhhCCcEEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence            34444    68999999999999999999999999944444666   34688899999999886

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=99.60  E-value=4.8e-15  Score=129.61  Aligned_cols=153  Identities=21%  Similarity=0.202  Sum_probs=110.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ++||||+|.|.+|+.++..+.+.+++++++++++..+...+...                .+.|         ++.+. .
T Consensus         1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A----------------~~~G---------i~~~~-~   54 (285)
T TIGR03215         1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA----------------RELG---------VKTSA-E   54 (285)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH----------------HHCC---------CCEEE-C
Confidence            47999999999999998888888899999999874321111100                0111         11111 1


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccC--CCCeEEcCCCchhhhH
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKP--ELNIVSNASCTTNCLA  160 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~--~~~~Va~p~C~~ta~~  160 (265)
                      +.+++ ....++|+||+|||+..|.+++..++++|+ +++.-.+....|++++++|.+++..  +.++|++|+|.++.+.
T Consensus        55 ~~e~l-l~~~dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~  132 (285)
T TIGR03215        55 GVDGL-LANPDIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIV  132 (285)
T ss_pred             CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHH
Confidence            22322 223579999999999999999999999997 3444333235789999999877653  4689999999999999


Q ss_pred             hHHHHHHHhcCceEEEEEEEeeccc
Q 024565          161 PLAKVIHDKFGIVEGLMTTVHSITA  185 (265)
Q Consensus       161 ~~L~pL~~~~~i~~~~v~~v~~~sg  185 (265)
                      .+|+++++...+  ..+.++++.|+
T Consensus       133 ~al~r~~d~~~~--~iv~ti~s~S~  155 (285)
T TIGR03215       133 AAISRVAPVHYA--EIVASIASRSA  155 (285)
T ss_pred             HHHHHhhccccE--EEEEEEEeecc
Confidence            999999987655  23467888885

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=99.38  E-value=1.5e-12  Score=107.55  Aligned_cols=101  Identities=19%  Similarity=0.291  Sum_probs=74.3

Q ss_pred             HHHHHHh-cCceEEEEEEEeeccccccc------------cCCCCCCcccCCccCCCceeecCC----ChhhHHH-----
Q 024565          163 AKVIHDK-FGIVEGLMTTVHSITATQKT------------VDGPSSKDWRGGRAASFNIIPSST----GAAKAVG-----  220 (265)
Q Consensus       163 L~pL~~~-~~i~~~~v~~v~~~sg~~~~------------~d~~~~~~~~~~~~~a~n~~p~~~----~~~~~~~-----  220 (265)
                      |+||+++ ++++++.+++++++||+++.            ..+.......+..++++|++||..    .|.++..     
T Consensus         1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~   80 (184)
T PF02774_consen    1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM   80 (184)
T ss_dssp             HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred             CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence            7899998 88999999999999998663            111111233556789999999994    3433322     


Q ss_pred             -----hhccCCCCceeEEEEEeeeCceEEEEEEEEec-CCCCHHHHHHHh
Q 024565          221 -----KVLPALNGKLTGMAFRVPTVDVSVVDLTVRLE-KDASYDEIKAAI  264 (265)
Q Consensus       221 -----~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~-~~~~~e~v~~~~  264 (265)
                           +++.... +++++|++||++|||++++|++++ ++.+.+++.++|
T Consensus        81 ~~~~~~~l~~~~-~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~  129 (184)
T PF02774_consen   81 IAETRKILGFPP-RVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAF  129 (184)
T ss_dssp             HHHHHHHCTETT-EEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHH
T ss_pred             hccccceeeccc-cccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHH
Confidence                 2222223 799999999999999999999996 777777777765

It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.96  E-value=3.7e-09  Score=81.35  Aligned_cols=111  Identities=23%  Similarity=0.265  Sum_probs=71.9

Q ss_pred             EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |++|+|+ |++|..+++.|.++|+++++++++...+ .+...      ..+++..                 .. .+  .
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~------~~~~~~~-----------------~~-~~--~   54 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS------EAGPHLK-----------------GE-VV--L   54 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH------HHCcccc-----------------cc-cc--c
Confidence            6899998 9999999999999999999999664322 22111      1111110                 00 01  1


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHH---HHHhCCCCeEEE--cCC---CCCCceEEeeecccccc
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAA---AHLKGGAKKVII--SAP---SKDAPMFVVGVNEHEYK  143 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~---~~~~~G~~~vvi--s~~---~~~~~~~v~~vn~~~~~  143 (265)
                      +.+..+|...++|+||.|+|...+.+.+.   ..++.|+  +++  |+.   .++.+..++++|+++++
T Consensus        55 ~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~~  121 (122)
T smart00859       55 ELEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAIK  121 (122)
T ss_pred             ccccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHhc
Confidence            12212233357999999999998888544   3346776  555  544   34578888999987664

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=98.92  E-value=2.9e-09  Score=94.59  Aligned_cols=90  Identities=27%  Similarity=0.374  Sum_probs=66.4

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+++||||+|+|.+|+.+++.+.++|++||+++.++.. .....      .            .           +.++.
T Consensus         1 M~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~-~~~~~------~------------~-----------~~v~~   50 (324)
T TIGR01921         1 MSKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG-AETLD------T------------E-----------TPVYA   50 (324)
T ss_pred             CCCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc-HHHHh------h------------c-----------CCccc
Confidence            78899999999999999999999999999999998752 11110      0            0           01111


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEc
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS  124 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis  124 (265)
                      ..+.+++   ..++|+|+.|+|+..+.+.+..++++|+ ++|.|
T Consensus        51 ~~d~~e~---l~~iDVViIctPs~th~~~~~~~L~aG~-NVV~s   90 (324)
T TIGR01921        51 VADDEKH---LDDVDVLILCMGSATDIPEQAPYFAQFA-NTVDS   90 (324)
T ss_pred             cCCHHHh---ccCCCEEEEcCCCccCHHHHHHHHHcCC-CEEEC
Confidence            1222222   2579999999999999999999999997 34444

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=98.83  E-value=1.2e-08  Score=88.97  Aligned_cols=90  Identities=23%  Similarity=0.327  Sum_probs=65.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |+||||+|+|.+|+.+++.+.++|++++++++.+..........         +         +       ..+.++  .
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~---------~---------~-------~~~~~~--~   53 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRA---------L---------G-------EAVRVV--S   53 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhh---------h---------c-------cCCeee--C
Confidence            47999999999999999999999999999998653222111100         0         0       012233  3


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      |.+++   ..++|+|++|+|+..+.+++.+++++|+. +++
T Consensus        54 d~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi   90 (265)
T PRK13303         54 SVDAL---PQRPDLVVECAGHAALKEHVVPILKAGID-CAV   90 (265)
T ss_pred             CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence            44444   25699999999999999999999999974 444

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.75  E-value=1.5e-08  Score=77.27  Aligned_cols=89  Identities=30%  Similarity=0.471  Sum_probs=66.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcC-CCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      +||||+|+|.+|+..++.+.++ |++++++|+++.... ..++                  ...+         ++.+  
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~------------------~~~~---------~~~~--   51 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFA------------------EKYG---------IPVY--   51 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHH------------------HHTT---------SEEE--
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHH------------------HHhc---------ccch--
Confidence            6999999999999999999887 899999999985321 1111                  0111         1233  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .|.+++ ++..++|+|+.|||...+.+.+..++++|+ ++++
T Consensus        52 ~~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~   91 (120)
T PF01408_consen   52 TDLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLV   91 (120)
T ss_dssp             SSHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEE
T ss_pred             hHHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEE
Confidence            345555 334579999999999999999999999997 5555

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK11579 putative oxidoreductase; Provisional

Probab=98.74  E-value=3e-08  Score=89.77  Aligned_cols=91  Identities=26%  Similarity=0.453  Sum_probs=67.1

Q ss_pred             CC-ccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MG-KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~-~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+ ++||||+|+|.+|+. +++.+...|++++++|+++.  ....+      .   .+.        +         .+.
T Consensus         1 m~~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~--~~~~~------~---~~~--------~---------~~~   52 (346)
T PRK11579          1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSD--ATKVK------A---DWP--------T---------VTV   52 (346)
T ss_pred             CCCcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCC--HHHHH------h---hCC--------C---------Cce
Confidence            54 589999999999984 78888888999999999874  22211      0   010        0         122


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .|++++ .++.++|+|+.|||+..|.+.+..++++|+ +|++
T Consensus        53 ~--~~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~   93 (346)
T PRK11579         53 V--SEPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVV   93 (346)
T ss_pred             e--CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEE
Confidence            2  345555 344679999999999999999999999994 6666

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.73  E-value=3.4e-08  Score=86.48  Aligned_cols=91  Identities=20%  Similarity=0.212  Sum_probs=65.7

Q ss_pred             CCccEEEEEccChhHHHHHHHHHc-CCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~-~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+++||||+|+|++|+.+++.|.+ .+++++++++++..+. +..+      .            ..+      .  ...
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a------~------------~~g------~--~~~   57 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFI------W------------GLR------R--PPP   57 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHH------H------------hcC------C--Ccc
Confidence            667999999999999999999988 4899999999874221 1111      0            000      0  011


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .+++++.   .++|+|++|+|+..+.++...++++|+ ++++
T Consensus        58 ~--~~~eell---~~~D~Vvi~tp~~~h~e~~~~aL~aGk-~Vi~   96 (271)
T PRK13302         58 V--VPLDQLA---THADIVVEAAPASVLRAIVEPVLAAGK-KAIV   96 (271)
T ss_pred             c--CCHHHHh---cCCCEEEECCCcHHHHHHHHHHHHcCC-cEEE
Confidence            1  3455552   468999999999999999999999996 3443

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=98.61  E-value=8.1e-08  Score=86.33  Aligned_cols=93  Identities=24%  Similarity=0.314  Sum_probs=68.1

Q ss_pred             CCccEEEEEccC-hhHHHHHHHHHcCCC-eEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEE
Q 024565            1 MGKVKIGINGFG-RIGRLVARVILQRDD-VELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT   77 (265)
Q Consensus         1 m~~i~vgI~G~G-~~G~~l~~~L~~~p~-~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~   77 (265)
                      |+++||||+|+| .+++.++..+.+.++ +++++++++.... ..++.         .|         +  +     . .
T Consensus         1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~---------~~---------~--~-----~-~   54 (342)
T COG0673           1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAE---------EF---------G--I-----A-K   54 (342)
T ss_pred             CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHH---------Hc---------C--C-----C-c
Confidence            788999999996 666779999999987 7999999985332 22110         00         1  0     0 1


Q ss_pred             EEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        78 ~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+  .|.+++ +++.++|+|+.|||+..|.+.+.+++++|+ +|++
T Consensus        55 ~~--~~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~   96 (342)
T COG0673          55 AY--TDLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLC   96 (342)
T ss_pred             cc--CCHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEE
Confidence            22  345555 344669999999999999999999999995 6666

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=98.59  E-value=1.1e-07  Score=82.97  Aligned_cols=96  Identities=22%  Similarity=0.356  Sum_probs=65.2

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||+|+|+ |+||+.+++.+.++|++++++++++..... ..    .+  .+.+.        +  .  ....+.++  
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~-~~----~~--~~~~~--------~--~--~~~gv~~~--   59 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL-QG----TD--AGELA--------G--I--GKVGVPVT--   59 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc-cC----CC--HHHhc--------C--c--CcCCceee--
Confidence            389999996 999999999999999999999998532110 00    00  00000        0  0  00012333  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .|++++   ..++|+|++||++..+.+.+..++++|+. +|+
T Consensus        60 ~d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi   97 (266)
T TIGR00036        60 DDLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV   97 (266)
T ss_pred             CCHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence            345554   24689999999999999999999999974 555

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.53  E-value=1.4e-07  Score=72.81  Aligned_cols=89  Identities=29%  Similarity=0.359  Sum_probs=60.1

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccC---hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFIT---TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |||+|+|+ |+||+.+++.+.++++++|+++.++..+   ++.+.          .+.        +    .....++++
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g----------~~~--------~----~~~~~~~v~   58 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVG----------ELA--------G----IGPLGVPVT   58 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCH----------HHC--------T----SST-SSBEB
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhh----------hhh--------C----cCCcccccc
Confidence            69999999 9999999999999999999999988642   11111          010        0    000112232


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCC
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK  119 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~  119 (265)
                        .+.+++   ...+|+++|+|-+....+.++.+++.|+.
T Consensus        59 --~~l~~~---~~~~DVvIDfT~p~~~~~~~~~~~~~g~~   93 (124)
T PF01113_consen   59 --DDLEEL---LEEADVVIDFTNPDAVYDNLEYALKHGVP   93 (124)
T ss_dssp             --S-HHHH---TTH-SEEEEES-HHHHHHHHHHHHHHT-E
T ss_pred             --hhHHHh---cccCCEEEEcCChHHhHHHHHHHHhCCCC
Confidence              344444   14599999999888888999999999974

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=98.53  E-value=2.3e-07  Score=80.04  Aligned_cols=90  Identities=21%  Similarity=0.244  Sum_probs=65.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ++||||+|+|.+|+.+++.|...  +.+++++|+++..+.  ...          +.        +       . .+++ 
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~--~~~----------~~--------~-------~-~~~~-   52 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL--PPA----------LA--------G-------R-VALL-   52 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH--HHH----------hh--------c-------c-Cccc-
Confidence            68999999999999999998864  459999998874211  000          00        0       0 1222 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEc
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS  124 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis  124 (265)
                       .+++++-  ...+|+|++|.++...+++.++.|++|+..+++|
T Consensus        53 -~~l~~ll--~~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~S   93 (267)
T PRK13301         53 -DGLPGLL--AWRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICS   93 (267)
T ss_pred             -CCHHHHh--hcCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence             3455531  2468999999999999999999999999877765

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=98.51  E-value=3.4e-07  Score=79.56  Aligned_cols=88  Identities=23%  Similarity=0.332  Sum_probs=64.2

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||+|+|+ |+||+.+++.+.++|++++++++++..+..  .      .. ..+                  .+..+  
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~--~------~~-~~~------------------~i~~~--   51 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL--V------GQ-GAL------------------GVAIT--   51 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--c------cc-CCC------------------Ccccc--
Confidence            489999999 999999999999999999999998742211  0      00 000                  11122  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .|.+++ +  .++|+|++||++..+.+.+..++++|+. +|+
T Consensus        52 ~dl~~l-l--~~~DvVid~t~p~~~~~~~~~al~~G~~-vvi   89 (257)
T PRK00048         52 DDLEAV-L--ADADVLIDFTTPEATLENLEFALEHGKP-LVI   89 (257)
T ss_pred             CCHHHh-c--cCCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence            344444 1  3689999999999999999999999974 555

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.49  E-value=3.4e-07  Score=79.96  Aligned_cols=90  Identities=28%  Similarity=0.419  Sum_probs=64.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+||||+|+|.+|+.+++.+.+.+ ++++++++++..+. +.++      .            ..+         ...+ 
T Consensus         1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a------~------------~~~---------~~~~-   52 (265)
T PRK13304          1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLA------S------------KTG---------AKAC-   52 (265)
T ss_pred             CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHH------H------------hcC---------CeeE-
Confidence            379999999999999999998874 79999999874321 1111      0            001         1122 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEc
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS  124 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis  124 (265)
                       .+.+++.   .++|+|++|+++..+.++.+.++++|+..+++|
T Consensus        53 -~~~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s   92 (265)
T PRK13304         53 -LSIDELV---EDVDLVVECASVNAVEEVVPKSLENGKDVIIMS   92 (265)
T ss_pred             -CCHHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEc
Confidence             3455552   469999999999999999999999997433333

>PRK10206 putative oxidoreductase; Provisional

Probab=98.49  E-value=2.1e-07  Score=84.34  Aligned_cols=91  Identities=15%  Similarity=0.258  Sum_probs=63.7

Q ss_pred             ccEEEEEccChhHH-HHHHHHHc-CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGR-LVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~-~l~~~L~~-~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+||||+|+|.+++ .+++.+.+ .+++++++|+|+..+....+      .   .|.        +         ++++ 
T Consensus         1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~------~---~~~--------~---------~~~~-   53 (344)
T PRK10206          1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA------P---IYS--------H---------IHFT-   53 (344)
T ss_pred             CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHH------H---hcC--------C---------Cccc-
Confidence            48999999998764 46776655 47899999999843221111      0   010        0         1222 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .|.+++ ++..++|+|+.|||+..|.+++.+++++| |+|++
T Consensus        54 -~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~   93 (344)
T PRK10206         54 -SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLV   93 (344)
T ss_pred             -CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEE
Confidence             345555 44468999999999999999999999999 46776

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=98.45  E-value=1.2e-06  Score=75.06  Aligned_cols=98  Identities=26%  Similarity=0.309  Sum_probs=66.4

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      +||||+|+|+ |+||+++++++.+.|+++|++..++..+...       .+..+.+.        |    .+...+++. 
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~-------g~d~ge~~--------g----~~~~gv~v~-   60 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSL-------GSDAGELA--------G----LGLLGVPVT-   60 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcccc-------ccchhhhc--------c----ccccCceee-
Confidence            3699999999 9999999999999999999999887533210       00000110        0    000112332 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .++...   ..++|+++|-|-+..+.++++.+++.|.+.|+-
T Consensus        61 -~~~~~~---~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIG   99 (266)
T COG0289          61 -DDLLLV---KADADVLIDFTTPEATLENLEFALEHGKPLVIG   99 (266)
T ss_pred             -cchhhc---ccCCCEEEECCCchhhHHHHHHHHHcCCCeEEE
Confidence             222222   367999999999999999999999999754443

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.45  E-value=4.4e-07  Score=74.59  Aligned_cols=139  Identities=19%  Similarity=0.221  Sum_probs=91.5

Q ss_pred             CccEEEEEccChhHHHHHHHHHcC-CCeEEEEEecc--ccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEE
Q 024565            2 GKVKIGINGFGRIGRLVARVILQR-DDVELVAVNDP--FITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT   77 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~   77 (265)
                      ++.||+|+|.|.+|..|+-.+++| .++|..+.+..  ..++ .+.+. +-...+                  ..|..- 
T Consensus         3 sk~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraar-lgv~tt------------------~egv~~-   62 (310)
T COG4569           3 SKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAAR-LGVATT------------------HEGVIG-   62 (310)
T ss_pred             CcceEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHh-cCCcch------------------hhHHHH-
Confidence            367999999999999999988888 56787766643  2222 11111 000000                  011000 


Q ss_pred             EEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchh
Q 024565           78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTN  157 (265)
Q Consensus        78 ~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~t  157 (265)
                      .+  .-| ++    +++|+||++|..+.+.+.+.++.++|++-+.++ +..-.|-++|-+|.++-.+ +..|+.-.|..+
T Consensus        63 ll--~~p-~~----~di~lvfdatsa~~h~~~a~~~ae~gi~~idlt-paaigp~vvp~~n~~eh~~-a~nvnmvtcggq  133 (310)
T COG4569          63 LL--NMP-EF----ADIDLVFDATSAGAHVKNAAALAEAGIRLIDLT-PAAIGPYVVPVVNLEEHVD-ALNVNMVTCGGQ  133 (310)
T ss_pred             HH--hCC-CC----CCcceEEeccccchhhcchHhHHhcCCceeecc-hhccCCeeccccchHHhcC-CCCcceEeecCc
Confidence            00  012 22    578999999999999999999999999655552 1122577888899655442 667888888888


Q ss_pred             hhHhHHHHHHHh
Q 024565          158 CLAPLAKVIHDK  169 (265)
Q Consensus       158 a~~~~L~pL~~~  169 (265)
                      +.++.++...+-
T Consensus       134 atipiv~avsrv  145 (310)
T COG4569         134 ATIPIVAAVSRV  145 (310)
T ss_pred             ccchhhhhhhhh
Confidence            888888776553

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=98.38  E-value=1.3e-06  Score=73.04  Aligned_cols=89  Identities=27%  Similarity=0.405  Sum_probs=65.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      ++|||+|+|.||+.+++++.+.+ ++|+++++|+..+- ..+...                        +.++.  .   
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~------------------------~~~~~--~---   51 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS------------------------VGRRC--V---   51 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh------------------------cCCCc--c---
Confidence            47999999999999999999773 59999999985331 111100                        01111  1   


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEc
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS  124 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis  124 (265)
                      .+.+++   ..++|++++|.++...++++++++++|+..+|+|
T Consensus        52 s~ide~---~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~S   91 (255)
T COG1712          52 SDIDEL---IAEVDLVVEAASPEAVREYVPKILKAGIDVIVMS   91 (255)
T ss_pred             ccHHHH---hhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEe
Confidence            234444   2679999999999999999999999999877764

>PRK06349 homoserine dehydrogenase; Provisional

Probab=98.34  E-value=1e-06  Score=82.00  Aligned_cols=92  Identities=24%  Similarity=0.381  Sum_probs=63.4

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF   71 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p---------~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   71 (265)
                      |+++||||+|+|.+|+.+++.|.+|+         ++++++|+++...-..        .    +.           +  
T Consensus         1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~--------~----~~-----------~--   55 (426)
T PRK06349          1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDR--------G----VD-----------L--   55 (426)
T ss_pred             CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhcc--------C----CC-----------C--
Confidence            77899999999999999999997764         6899999986421100        0    00           0  


Q ss_pred             CCEEEEEEecCCCCCCCcccccccEEEEecCC-cccHHhHHHHHhCCCCeEEE
Q 024565           72 GEKPVTVFGVRNPEEIPWAETGAEYVVESTGV-FTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        72 ~g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~-~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+  ...+  .|++++ ..+.++|+|++|++. ..+.+++.+++++|+ +||.
T Consensus        56 ~~--~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVt  102 (426)
T PRK06349         56 PG--ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK-HVVT  102 (426)
T ss_pred             cc--ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEE
Confidence            00  1122  344444 334679999999876 456788999999995 5554

>PRK06270 homoserine dehydrogenase; Provisional

Probab=98.30  E-value=2.1e-06  Score=77.64  Aligned_cols=102  Identities=25%  Similarity=0.342  Sum_probs=60.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccccCh-h----hhhhheeecccCCcccccceeeeCCce
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITT-D----YMTYMFKYDSVHGQWKHHELKVKDDKT   68 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p---------~~el~~v~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (265)
                      ++||+|+|+|.+|+.+++.|.+++         ++++++|+++.... +    ....+..+..            ..+ .
T Consensus         2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~------------~~~-~   68 (341)
T PRK06270          2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKE------------ETG-K   68 (341)
T ss_pred             eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHh------------ccC-C
Confidence            699999999999999999998764         79999999863211 0    0000000000            000 0


Q ss_pred             EEECCEEEE-EEecCCCCCCCcccccccEEEEecCCccc-----HHhHHHHHhCCCCeEEE
Q 024565           69 LLFGEKPVT-VFGVRNPEEIPWAETGAEYVVESTGVFTD-----KDKAAAHLKGGAKKVII  123 (265)
Q Consensus        69 l~~~g~~~~-~~~~~~~~~~~~~~~~~DvV~~at~~~~~-----~~~~~~~~~~G~~~vvi  123 (265)
                      +.    ... .....+++++ +.+.++|+|++|||+..+     .+++..++++|+ +||+
T Consensus        69 ~~----~~~~~~~~~d~~el-l~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gk-hVVt  123 (341)
T PRK06270         69 LA----DYPEGGGEISGLEV-IRSVDADVVVEATPTNIETGEPALSHCRKALERGK-HVVT  123 (341)
T ss_pred             cc----cCccccccCCHHHH-hhccCCCEEEECCcCcccccchHHHHHHHHHHCCC-EEEc
Confidence            00    000 0000233333 233578999999997554     678899999996 4444

>PLN02775 Probable dihydrodipicolinate reductase

Probab=98.01  E-value=2.4e-05  Score=68.41  Aligned_cols=95  Identities=23%  Similarity=0.191  Sum_probs=65.1

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      .+||.|+|+ |+||+++++++.+ ++++|++..+....+....                        +.+.|..++++..
T Consensus        11 ~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~------------------------~~~~g~~v~~~~~   65 (286)
T PLN02775         11 AIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVT------------------------VEVCGVEVRLVGP   65 (286)
T ss_pred             CCeEEEECCCChHHHHHHHHHhc-CCCEEEEEecccccccccc------------------------ceeccceeeeecC
Confidence            589999999 9999999999999 9999999888643332110                        1112223444422


Q ss_pred             CCCCCCC--ccccccc-EEEEecCCcccHHhHHHHHhCCCCeEE
Q 024565           82 RNPEEIP--WAETGAE-YVVESTGVFTDKDKAAAHLKGGAKKVI  122 (265)
Q Consensus        82 ~~~~~~~--~~~~~~D-vV~~at~~~~~~~~~~~~~~~G~~~vv  122 (265)
                      .|.++.-  .+...+| +++|-|-+....+.++.+++.|+..|+
T Consensus        66 ~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~Vv  109 (286)
T PLN02775         66 SEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVM  109 (286)
T ss_pred             ccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEE
Confidence            3333320  0112588 899999999999999999999985333

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=98.01  E-value=1.3e-05  Score=72.47  Aligned_cols=90  Identities=17%  Similarity=0.121  Sum_probs=61.0

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      .++||||+|+ .+|+.+++.+.+.| ++++++|+|+..+ .+.++.-         |         |         ++.+
T Consensus         2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~---------~---------g---------i~~y   53 (343)
T TIGR01761         2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHR---------L---------G---------VPLY   53 (343)
T ss_pred             CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH---------h---------C---------CCcc
Confidence            3689999999 56999999999988 8999999998533 2222210         0         1         1222


Q ss_pred             ecCCCCCCCcccccccEEEE--ecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVE--STGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~--at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .+.+++ ..+.++|+|..  ++|++.+.+.+.+++++|+ +|++
T Consensus        54 --~~~eel-l~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGk-HVL~   95 (343)
T TIGR01761        54 --CEVEEL-PDDIDIACVVVRSAIVGGQGSALARALLARGI-HVLQ   95 (343)
T ss_pred             --CCHHHH-hcCCCEEEEEeCCCCCCccHHHHHHHHHhCCC-eEEE
Confidence              345555 22234555555  3467899999999999995 6666

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=97.78  E-value=2.1e-05  Score=59.90  Aligned_cols=80  Identities=24%  Similarity=0.284  Sum_probs=50.9

Q ss_pred             ccChhHHHHHHHHHcCC---CeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCCC
Q 024565           10 GFGRIGRLVARVILQRD---DVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPE   85 (265)
Q Consensus        10 G~G~~G~~l~~~L~~~p---~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~   85 (265)
                      |+|.+|+.++++|.+++   ++++++|+++. .. ....     ..   .        ..+         ....  .+.+
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~-----~~---~--------~~~---------~~~~--~~~~   52 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDW-----AA---S--------FPD---------EAFT--TDLE   52 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTH-----HH---H--------HTH---------SCEE--SSHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhh-----hh---h--------ccc---------cccc--CCHH
Confidence            78999999999999886   79999999875 21 1000     00   0        000         0011  2333


Q ss_pred             CCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           86 EIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        86 ~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      ++ ....++|+|+||++.....++.+.++++|+
T Consensus        53 ~~-~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~   84 (117)
T PF03447_consen   53 EL-IDDPDIDVVVECTSSEAVAEYYEKALERGK   84 (117)
T ss_dssp             HH-HTHTT-SEEEE-SSCHHHHHHHHHHHHTTC
T ss_pred             HH-hcCcCCCEEEECCCchHHHHHHHHHHHCCC
Confidence            32 111369999999999999999999999997

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.75  E-value=3.5e-05  Score=59.66  Aligned_cols=81  Identities=25%  Similarity=0.277  Sum_probs=51.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      .+||+|||+|++|..|.++|.+.. .++.++.+++... ++.+..                        +.+  ..+   
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag-~~v~~v~srs~~sa~~a~~~------------------------~~~--~~~---   59 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAG-HEVVGVYSRSPASAERAAAF------------------------IGA--GAI---   59 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTT-SEEEEESSCHH-HHHHHHC--------------------------TT--------
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCCcccccccccc------------------------ccc--ccc---
Confidence            589999999999999999999875 7899998875332 222110                        001  112   


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhC
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG  116 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~  116 (265)
                      .+++++   ..+.|++|.|+|...-.+.++.+.+.
T Consensus        60 ~~~~~~---~~~aDlv~iavpDdaI~~va~~La~~   91 (127)
T PF10727_consen   60 LDLEEI---LRDADLVFIAVPDDAIAEVAEQLAQY   91 (127)
T ss_dssp             --TTGG---GCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred             cccccc---cccCCEEEEEechHHHHHHHHHHHHh
Confidence            234333   25799999999998888888777665

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=97.73  E-value=0.00011  Score=62.03  Aligned_cols=92  Identities=17%  Similarity=0.258  Sum_probs=61.9

Q ss_pred             ccEEEEEccChhHHHHHHHHH-cCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~-~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      +.||+|+|+|.+|+.+++.+. ..++++++++.|..  .....          .              .+.|  +++...
T Consensus        84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d--~~~~~----------~--------------~i~g--~~v~~~  135 (213)
T PRK05472         84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD--PEKIG----------T--------------KIGG--IPVYHI  135 (213)
T ss_pred             CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC--hhhcC----------C--------------EeCC--eEEcCH
Confidence            579999999999999998643 34679999999863  21100          0              0011  112111


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+.+++ ....++|.|+.|+|...+.+....++++|++.++.
T Consensus       136 ~~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~  176 (213)
T PRK05472        136 DELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILN  176 (213)
T ss_pred             HHHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEee
Confidence            223333 22346999999999999888899999999876665

>PRK08374 homoserine dehydrogenase; Provisional

Probab=97.67  E-value=9e-05  Score=66.91  Aligned_cols=109  Identities=31%  Similarity=0.381  Sum_probs=61.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEE-EC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLL-FG   72 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p---------~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~   72 (265)
                      ++||+|+|+|.+|+.++++|.++.         ++++++|+++....-. ..-+  |  ...+.  ......+ .+. +.
T Consensus         2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~-~~Gi--d--~~~l~--~~~~~~~-~~~~~~   73 (336)
T PRK08374          2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWL-PEDI--D--LREAK--EVKENFG-KLSNWG   73 (336)
T ss_pred             eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccC-CCCC--C--hHHHH--HhhhccC-chhhcc
Confidence            699999999999999999987731         4889999886422100 0000  0  00000  0000001 000 00


Q ss_pred             CEEEEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           73 EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        73 g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       ..... ...+++++ +...++|+|++|++.....++..++++.|+ ++|.
T Consensus        74 -~~~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~-~VVt  120 (336)
T PRK08374         74 -NDYEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGK-SVVT  120 (336)
T ss_pred             -ccccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCC-cEEE
Confidence             00000 00123333 323579999999999888899999999997 3443

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.63  E-value=0.00013  Score=64.81  Aligned_cols=93  Identities=24%  Similarity=0.301  Sum_probs=68.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC--CeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p--~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      .+|.||+|+|.+++.+++.|..-|  +.++++|++++.+. ..+|.-      |              +++    ..+++
T Consensus         6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~------~--------------~~~----~~k~y   61 (351)
T KOG2741|consen    6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQR------H--------------NIP----NPKAY   61 (351)
T ss_pred             eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHh------c--------------CCC----CCccc
Confidence            589999999999999999999888  89999999985331 112100      0              011    12233


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .+.|++ .++..+|+|...+|+-.|.+++..+++.|+ +|++
T Consensus        62 --~syEeL-akd~~vDvVyi~~~~~qH~evv~l~l~~~K-~VL~  101 (351)
T KOG2741|consen   62 --GSYEEL-AKDPEVDVVYISTPNPQHYEVVMLALNKGK-HVLC  101 (351)
T ss_pred             --cCHHHH-hcCCCcCEEEeCCCCccHHHHHHHHHHcCC-cEEe
Confidence              234555 345789999999999999999999999994 5666

>PRK06813 homoserine dehydrogenase; Validated

Probab=97.62  E-value=0.00012  Score=66.26  Aligned_cols=35  Identities=23%  Similarity=0.480  Sum_probs=29.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p---------~~el~~v~~~~   37 (265)
                      +++|+|+|+|.+|+.++++|.++.         ++++++|+++.
T Consensus         2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~   45 (346)
T PRK06813          2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRN   45 (346)
T ss_pred             eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecc
Confidence            599999999999999999997542         47889998753

>PRK06392 homoserine dehydrogenase; Provisional

Probab=97.60  E-value=0.00026  Score=63.61  Aligned_cols=34  Identities=35%  Similarity=0.649  Sum_probs=29.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcC-------CCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQR-------DDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~-------p~~el~~v~~~~   37 (265)
                      |||+|+|+|.+|+.++++|.++       .++++++|+++.
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~   41 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSK   41 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECC
Confidence            4899999999999999999874       468999998864

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=97.58  E-value=0.00025  Score=63.31  Aligned_cols=99  Identities=24%  Similarity=0.388  Sum_probs=60.6

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccccChhhhhhheeecccC-CcccccceeeeCCceEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITTDYMTYMFKYDSVH-GQWKHHELKVKDDKTLL   70 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p---------~~el~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~   70 (265)
                      |+++||+|+|+|.+|+.++++|.++.         ++++++|.++.....+     .+|-.. ..|.      .++    
T Consensus         1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~-----~~~~~~~~~~~------~~~----   65 (333)
T COG0460           1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR-----DLDLLNAEVWT------TDG----   65 (333)
T ss_pred             CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc-----cccccchhhhe------ecc----
Confidence            78899999999999999999998752         5788888877422110     000000 0000      000    


Q ss_pred             ECCEEEEEEecCCCCCCCcccccccEEEEecCCcc--cH--HhHHHHHhCCCCeEEEcCC
Q 024565           71 FGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFT--DK--DKAAAHLKGGAKKVIISAP  126 (265)
Q Consensus        71 ~~g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~--~~--~~~~~~~~~G~~~vvis~~  126 (265)
                            ...  .+ .++.+ ..+.|+|+++++...  +.  ++..++++.|.  .|+++.
T Consensus        66 ------~~~--~~-~~~~~-~~~~dvvve~~~~d~~~~~~~~~~~~al~~Gk--hVVTaN  113 (333)
T COG0460          66 ------ALS--LG-DEVLL-DEDIDVVVELVGGDVEPAEPADLYLKALENGK--HVVTAN  113 (333)
T ss_pred             ------ccc--cc-Hhhhc-cccCCEEEecCcccCCchhhHHHHHHHHHcCC--eEECCC
Confidence                  000  00 12212 367899999998732  33  67889999996  666554

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=97.58  E-value=0.00014  Score=64.67  Aligned_cols=109  Identities=24%  Similarity=0.354  Sum_probs=66.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeC--Cc---eEEECCEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD--DK---TLLFGEKPVT   77 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~l~~~g~~~~   77 (265)
                      .+|||+||+|.+|+-++.....-|++++++|.+++.+..+.+|    |..+..-  ..+.+..  .+   .+ -.|+ +.
T Consensus        17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~----~~ag~~~--~~~~e~~~~s~~a~Ai-~aGK-i~   88 (438)
T COG4091          17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAY----DRAGGPK--IEAVEADDASKMADAI-EAGK-IA   88 (438)
T ss_pred             ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHH----HHhcCCc--ccccccchhhHHHHHH-hcCc-EE
Confidence            6899999999999999999998899999999998755444332    2111110  0000000  00   00 0121 22


Q ss_pred             EEecCCCCCCCcccccccEEEEecCCc-ccHHhHHHHHhCCCCeEEE
Q 024565           78 VFGVRNPEEIPWAETGAEYVVESTGVF-TDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        78 ~~~~~~~~~~~~~~~~~DvV~~at~~~-~~~~~~~~~~~~G~~~vvi  123 (265)
                      +.  .|.+.+ .....+|+|+++|+.- ...+....++..| |++|.
T Consensus        89 vT--~D~~~i-~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~-KHlVM  131 (438)
T COG4091          89 VT--DDAELI-IANDLIDVIIDATGVPEVGAKIALEAILHG-KHLVM  131 (438)
T ss_pred             Ee--cchhhh-hcCCcceEEEEcCCCcchhhHhHHHHHhcC-CeEEE
Confidence            22  344444 4456799999999974 4556666777777 45554

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=97.58  E-value=0.00014  Score=53.45  Aligned_cols=90  Identities=20%  Similarity=0.265  Sum_probs=62.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      +.|+.|+|+|..|+.++....+..+++++++.|..  .+..                      |+  .++|  ++++.  
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~--~~~~----------------------G~--~i~g--ipV~~--   52 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVD--PEKI----------------------GK--EIGG--IPVYG--   52 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEEC--TTTT----------------------TS--EETT--EEEES--
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcC--CCcc----------------------Cc--EECC--EEeec--
Confidence            57999999999999998777777789999998863  2111                      10  1122  55652  


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +.+++.-. -++|+.+.|.|.....+.+.+++++|+|.++.
T Consensus        53 ~~~~l~~~-~~i~iaii~VP~~~a~~~~~~~~~~gIk~i~n   92 (96)
T PF02629_consen   53 SMDELEEF-IEIDIAIITVPAEAAQEVADELVEAGIKGIVN   92 (96)
T ss_dssp             SHHHHHHH-CTTSEEEEES-HHHHHHHHHHHHHTT-SEEEE
T ss_pred             cHHHhhhh-hCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEE
Confidence            23333100 13899999999999999999999999987764

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.56  E-value=0.00015  Score=73.80  Aligned_cols=96  Identities=14%  Similarity=0.117  Sum_probs=64.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeE------------EEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVE------------LVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTL   69 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~e------------l~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   69 (265)
                      |.||+|+|+|++|+.+++.|.++|+++            +++|+|.... .+.++.     . +++..          .+
T Consensus       569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~-----~-~~~~~----------~v  632 (1042)
T PLN02819        569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVE-----G-IENAE----------AV  632 (1042)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHH-----h-cCCCc----------eE
Confidence            579999999999999999999998877            7888887422 221110     0 00000          01


Q ss_pred             EECCEEEEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           70 LFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        70 ~~~g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                           .+.+   .|.+++.-...++|+|+.|+|...+.+.+..++++|+ +++.
T Consensus       633 -----~lDv---~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGk-Hvv~  677 (1042)
T PLN02819        633 -----QLDV---SDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKK-HLVT  677 (1042)
T ss_pred             -----Eeec---CCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCC-CEEE
Confidence                 1111   2333331001469999999999999999999999996 4554

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=97.46  E-value=0.00033  Score=61.09  Aligned_cols=91  Identities=22%  Similarity=0.270  Sum_probs=60.4

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE-eccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAV-NDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      +||.|+|+ |.||+++++++.+ ++++|++. .+.........               .          +.|..+++..+
T Consensus         1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~---------------~----------~~g~~v~v~~~   54 (275)
T TIGR02130         1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEA---------------E----------VAGKEILLHGP   54 (275)
T ss_pred             CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchh---------------h----------hcccceeeecc
Confidence            58999999 9999999999888 89999987 44322221111               0          11112333211


Q ss_pred             ----CCCCCCCccccccc-EEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 ----RNPEEIPWAETGAE-YVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ----~~~~~~~~~~~~~D-vV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                          .+++++ + ...+| +++|-|-+....+.++.+++.|+. +|+
T Consensus        55 ~~~~~~l~~~-~-~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~-~Vi   98 (275)
T TIGR02130        55 SEREARIGEV-F-AKYPELICIDYTHPSAVNDNAAFYGKHGIP-FVM   98 (275)
T ss_pred             ccccccHHHH-H-hhcCCEEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence                223333 1 12378 999999999999999999999985 444

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=97.40  E-value=0.00033  Score=57.10  Aligned_cols=92  Identities=21%  Similarity=0.321  Sum_probs=63.5

Q ss_pred             CccEEEEEccChhHHHHHHHHHc-CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            2 GKVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~-~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ++.++.|+|+|.+|+.++.--.. +-++.++++.|..  .+.+          |...              .  ++++..
T Consensus        83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~--~~~V----------G~~~--------------~--~v~V~~  134 (211)
T COG2344          83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVD--PDKV----------GTKI--------------G--DVPVYD  134 (211)
T ss_pred             cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCC--HHHh----------Cccc--------------C--Ceeeec
Confidence            36899999999999998764433 4569999998863  2211          1110              1  134433


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI  122 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vv  122 (265)
                      -.+.+++ .+..++|+++.|.|...+.+.+..+.++|+|.+.
T Consensus       135 ~d~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIl  175 (211)
T COG2344         135 LDDLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGIL  175 (211)
T ss_pred             hHHHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEE
Confidence            2334433 2335899999999999999999999999998665

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.36  E-value=0.00038  Score=59.72  Aligned_cols=84  Identities=14%  Similarity=0.158  Sum_probs=49.7

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCC--CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p--~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |..+||+|+|+|.+|..+++.|.++.  +++.+.+.++. +.++...+.   .            ..+         +..
T Consensus         2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~-~~~~~~~~~---~------------~~~---------~~~   56 (245)
T PRK07634          2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS-NVEKLDQLQ---A------------RYN---------VST   56 (245)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC-CHHHHHHHH---H------------HcC---------cEE
Confidence            33689999999999999999987663  35423333332 111111000   0            001         112


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHH
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL  114 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~  114 (265)
                      +  .+.+++   ..++|+||.|+|...+.+..+.+.
T Consensus        57 ~--~~~~~~---~~~~DiViiavp~~~~~~v~~~l~   87 (245)
T PRK07634         57 T--TDWKQH---VTSVDTIVLAMPPSAHEELLAELS   87 (245)
T ss_pred             e--CChHHH---HhcCCEEEEecCHHHHHHHHHHHH
Confidence            1  233332   156899999999998888776654

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=97.29  E-value=0.00078  Score=54.68  Aligned_cols=36  Identities=14%  Similarity=-0.025  Sum_probs=30.4

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+++.+-|+|+ |..|+.+++.+++.|.|.-+.+..+
T Consensus        16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~R   52 (238)
T KOG4039|consen   16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILR   52 (238)
T ss_pred             hhccceEEEeccccccHHHHHHHHhcccceeEEEEEe
Confidence            67889999999 9999999999999999865444433

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.26  E-value=0.00093  Score=61.12  Aligned_cols=123  Identities=21%  Similarity=0.252  Sum_probs=72.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc-ChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||-|+|+|.+|+.+++.|+++.+.++. |+|++. ..+++.     ++..++..          .+     .+.+   
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdRs~~~~~~i~-----~~~~~~v~----------~~-----~vD~---   56 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVT-IADRSKEKCARIA-----ELIGGKVE----------AL-----QVDA---   56 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEE-EEeCCHHHHHHHH-----hhccccce----------eE-----Eecc---
Confidence            48999999999999999999999776654 555542 233332     11111110          11     1111   


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCc
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCT  155 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~  155 (265)
                      .+.+.+.=.-.+.|+|+.|.|...+....+.+++.|+.-+.+|...+.    ...++ +..+ ++.+.+.++|.
T Consensus        57 ~d~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~----~~~~~-~~a~-~Agit~v~~~G  124 (389)
T COG1748          57 ADVDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEP----PWKLD-EEAK-KAGITAVLGCG  124 (389)
T ss_pred             cChHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCch----hhhhh-HHHH-HcCeEEEcccC
Confidence            222111000145699999999999999999999999854444433211    12222 2333 35677777774

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.15  E-value=0.0006  Score=49.65  Aligned_cols=88  Identities=24%  Similarity=0.278  Sum_probs=51.7

Q ss_pred             EEEEEccChhHHHHHHHHHcCC--CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            5 KIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p--~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ||||+|+|.+|..+++.|.++.  ..++..+++++  .+...++.   .            ..+         ..+.. .
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~--~~~~~~~~---~------------~~~---------~~~~~-~   53 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS--PEKAAELA---K------------EYG---------VQATA-D   53 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS--HHHHHHHH---H------------HCT---------TEEES-E
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc--HHHHHHHH---H------------hhc---------ccccc-C
Confidence            7999999999999999999884  25666565653  22222111   0            000         01111 0


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHH--HhCCCCeEEEc
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAH--LKGGAKKVIIS  124 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~--~~~G~~~vvis  124 (265)
                      +..++   ....|+||.|.+.....+.....  ...+.  .++|
T Consensus        54 ~~~~~---~~~advvilav~p~~~~~v~~~i~~~~~~~--~vis   92 (96)
T PF03807_consen   54 DNEEA---AQEADVVILAVKPQQLPEVLSEIPHLLKGK--LVIS   92 (96)
T ss_dssp             EHHHH---HHHTSEEEE-S-GGGHHHHHHHHHHHHTTS--EEEE
T ss_pred             ChHHh---hccCCEEEEEECHHHHHHHHHHHhhccCCC--EEEE
Confidence            12222   14689999999998888877665  45564  6654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02700 homoserine dehydrogenase family protein

Probab=97.12  E-value=0.0016  Score=59.36  Aligned_cols=37  Identities=30%  Similarity=0.455  Sum_probs=31.0

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCC--------CeEEEEEeccc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDPF   37 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p--------~~el~~v~~~~   37 (265)
                      |++++|+|+|+|.+|+.++++|.++.        ++++++|++..
T Consensus         1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~   45 (377)
T PLN02700          1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSK   45 (377)
T ss_pred             CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCC
Confidence            88899999999999999999987542        36788888753

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.07  E-value=0.0011  Score=57.61  Aligned_cols=81  Identities=17%  Similarity=0.151  Sum_probs=49.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+||+|+|+|.+|..+++.|.+.. ..+.+.+.+++.. .+.+.      .            ..|         +.+. 
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~------~------------~~g---------~~~~-   53 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALA------E------------EYG---------VRAA-   53 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHH------H------------hcC---------Ceec-
Confidence            589999999999999999988653 1233455555321 11111      0            001         1111 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK  115 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~  115 (265)
                       .+.++.   ..++|+||.|++.....+..+.+..
T Consensus        54 -~~~~~~---~~~advVil~v~~~~~~~v~~~l~~   84 (267)
T PRK11880         54 -TDNQEA---AQEADVVVLAVKPQVMEEVLSELKG   84 (267)
T ss_pred             -CChHHH---HhcCCEEEEEcCHHHHHHHHHHHHh
Confidence             223332   1468999999999887777766554

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=96.99  E-value=0.0023  Score=58.46  Aligned_cols=112  Identities=20%  Similarity=0.212  Sum_probs=64.9

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCC-CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCC---ceEE--ECCEE
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD---KTLL--FGEKP   75 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p-~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~--~~g~~   75 (265)
                      |.||+|+|+ |.||+..++.+.++| .+++++++... +.+.+..+.  ....+.+-    ...+.   +.+.  ..+..
T Consensus         1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~-n~~~l~~q~--~~f~p~~v----~i~~~~~~~~l~~~l~~~~   73 (385)
T PRK05447          1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGK-NVELLAEQA--REFRPKYV----VVADEEAAKELKEALAAAG   73 (385)
T ss_pred             CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCC-CHHHHHHHH--HHhCCCEE----EEcCHHHHHHHHHhhccCC
Confidence            379999998 999999999999987 59999998543 333222111  11111111    00000   0000  00101


Q ss_pred             EEEEec-CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           76 VTVFGV-RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        76 ~~~~~~-~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +.++.. ....++ ....++|+|+.+.+.....+..-.++++|+ ++.+
T Consensus        74 ~~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK-~VaL  120 (385)
T PRK05447         74 IEVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAGK-RIAL  120 (385)
T ss_pred             ceEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCCC-cEEE
Confidence            122221 112222 122579999999999888888889999996 3444

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=96.97  E-value=0.0017  Score=56.55  Aligned_cols=26  Identities=27%  Similarity=0.598  Sum_probs=23.7

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCC
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRD   26 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p   26 (265)
                      |+.+||+|+|+|.+|..+++.|.+..
T Consensus         1 ~~~mkI~iIG~G~mG~ai~~~l~~~~   26 (260)
T PTZ00431          1 MENIRVGFIGLGKMGSALAYGIENSN   26 (260)
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhCC
Confidence            77789999999999999999998764

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.78  E-value=0.0026  Score=51.69  Aligned_cols=90  Identities=27%  Similarity=0.378  Sum_probs=55.5

Q ss_pred             EEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe--cC
Q 024565            6 IGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG--VR   82 (265)
Q Consensus         6 vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~   82 (265)
                      |.|.|+ |++|+.+++.|.+++ .++.+++........          .           .+         +.++.  ..
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~~~~~----------~-----------~~---------~~~~~~d~~   49 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPSKAED----------S-----------PG---------VEIIQGDLF   49 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGHHH----------C-----------TT---------EEEEESCTT
T ss_pred             eEEECCCChHHHHHHHHHHHCC-CEEEEEecCchhccc----------c-----------cc---------cccceeeeh
Confidence            689999 999999999999997 899988865322210          0           01         11111  11


Q ss_pred             CCCCCCcccccccEEEEecCCcc-----cHHhHHHHHhCCCCeEEE-cCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFT-----DKDKAAAHLKGGAKKVII-SAP  126 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~-----~~~~~~~~~~~G~~~vvi-s~~  126 (265)
                      |++.+.-...++|+||.|.+...     .+...+.+.+.|++++++ |+.
T Consensus        50 d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~   99 (183)
T PF13460_consen   50 DPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSA   99 (183)
T ss_dssp             CHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred             hhhhhhhhhhhcchhhhhhhhhcccccccccccccccccccccceeeecc
Confidence            22211101147999999998432     333445566789887775 444

...

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.75  E-value=0.0016  Score=52.56  Aligned_cols=33  Identities=33%  Similarity=0.524  Sum_probs=24.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |+|||++|+|.+|..+++.|.++. +++. +++++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g-~~v~-~~d~~   33 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAG-YEVT-VYDRS   33 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTT-TEEE-EEESS
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcC-CeEE-eeccc
Confidence            489999999999999999999874 6654 45553

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.68  E-value=0.00095  Score=56.65  Aligned_cols=96  Identities=22%  Similarity=0.206  Sum_probs=57.4

Q ss_pred             EEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCC
Q 024565            6 IGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP   84 (265)
Q Consensus         6 vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~   84 (265)
                      |.|.|+ |.+|+.+++.|.. +++++.+++....+. ... -+         .      ..|-.+      + .....|+
T Consensus         1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~~~-~~~-~l---------~------~~g~~v------v-~~d~~~~   55 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPSSD-RAQ-QL---------Q------ALGAEV------V-EADYDDP   55 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSHHH-HHH-HH---------H------HTTTEE------E-ES-TT-H
T ss_pred             CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccchh-hhh-hh---------h------cccceE------e-ecccCCH
Confidence            789999 9999999999999 679999988754211 110 00         0      011001      0 0011222


Q ss_pred             CCCCcccccccEEEEecCCc------ccHHhHHHHHhCCCCeEEEcCC
Q 024565           85 EEIPWAETGAEYVVESTGVF------TDKDKAAAHLKGGAKKVIISAP  126 (265)
Q Consensus        85 ~~~~~~~~~~DvV~~at~~~------~~~~~~~~~~~~G~~~vvis~~  126 (265)
                      +.+.=...++|.||.+++..      .....+.++.++|+|++|.|..
T Consensus        56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~  103 (233)
T PF05368_consen   56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF  103 (233)
T ss_dssp             HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred             HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence            22211126899999999943      3445677888899998887543

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.59  E-value=0.0039  Score=57.22  Aligned_cols=92  Identities=24%  Similarity=0.353  Sum_probs=52.8

Q ss_pred             EEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCCC
Q 024565            6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPE   85 (265)
Q Consensus         6 vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~   85 (265)
                      |.|+|+|++|+.+++.|.+++.++-+.+++++..  ....+.  +..            .+..+     ........|.+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~--~~~~~~--~~~------------~~~~~-----~~~~~d~~~~~   59 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPE--KAERLA--EKL------------LGDRV-----EAVQVDVNDPE   59 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHH--HHHHHH--T--------------TTTTE-----EEEE--TTTHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHH--HHHHHH--hhc------------cccce-----eEEEEecCCHH
Confidence            6899999999999999999988855666666422  211111  000            00001     11111112322


Q ss_pred             CCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           86 EIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        86 ~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      ++.=...+.|+|+.|+|.......++.+++.|+
T Consensus        60 ~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~   92 (386)
T PF03435_consen   60 SLAELLRGCDVVINCAGPFFGEPVARACIEAGV   92 (386)
T ss_dssp             HHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-
T ss_pred             HHHHHHhcCCEEEECCccchhHHHHHHHHHhCC
Confidence            221012578999999999988899999999998

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.56  E-value=0.005  Score=54.07  Aligned_cols=30  Identities=30%  Similarity=0.412  Sum_probs=24.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |||+|+|+|.+|..+++.|.++. .++.++.
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g-~~V~~~d   30 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLG-HTVYGVS   30 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCC-CEEEEEE
Confidence            37999999999999999998774 5655443

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.55  E-value=0.0059  Score=53.59  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=23.7

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCC
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRD   26 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p   26 (265)
                      |+.+||+|+|+|.+|..+++.|.++.
T Consensus         1 ~~~mkI~~IG~G~mG~aia~~l~~~g   26 (279)
T PRK07679          1 MSIQNISFLGAGSIAEAIIGGLLHAN   26 (279)
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCC
Confidence            77789999999999999999998774

>PLN02256 arogenate dehydrogenase

Probab=96.48  E-value=0.0048  Score=54.97  Aligned_cols=33  Identities=33%  Similarity=0.681  Sum_probs=27.1

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |.++||+|+|+|.+|+.+++.|.+.+ .++.++.
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d   66 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATS   66 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEE
Confidence            35689999999999999999998764 6766554

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=96.46  E-value=0.01  Score=59.65  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPF   37 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p---------~~el~~v~~~~   37 (265)
                      |++++|+|+|+|.+|+.++++|.++.         ++++++|+++.
T Consensus       456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~  501 (810)
T PRK09466        456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSR  501 (810)
T ss_pred             CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCC
Confidence            35689999999999999999997642         47889998753

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.46  E-value=0.0074  Score=51.48  Aligned_cols=35  Identities=31%  Similarity=0.589  Sum_probs=31.3

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +.+||+|.|+|.+|+.+++.|.+. ++++++|+|..
T Consensus        30 ~~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~~   64 (227)
T cd01076          30 AGARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDSD   64 (227)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCC
Confidence            468999999999999999999877 69999999863

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.42  E-value=0.016  Score=44.10  Aligned_cols=81  Identities=20%  Similarity=0.168  Sum_probs=53.3

Q ss_pred             cEEEEEcc----ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            4 VKIGINGF----GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         4 i~vgI~G~----G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      .+|+|+|+    +..|..+++.|.++ ++++..|+-...+                               +.|  .+.+
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~-G~~v~~Vnp~~~~-------------------------------i~G--~~~y   46 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAA-GYEVYPVNPKGGE-------------------------------ILG--IKCY   46 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHT-T-EEEEESTTCSE-------------------------------ETT--EE-B
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhC-CCEEEEECCCceE-------------------------------ECc--EEee
Confidence            37999995    77899999999995 4787777643211                               112  2233


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .+.++.+   ..+|+++.|+|.....+.++++.+.|++.+++
T Consensus        47 --~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~   85 (116)
T PF13380_consen   47 --PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWL   85 (116)
T ss_dssp             --SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE
T ss_pred             --ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEE
Confidence              2333332   57899999999999999999999999998887

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.42  E-value=0.0096  Score=52.18  Aligned_cols=90  Identities=17%  Similarity=0.229  Sum_probs=51.5

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCC--eEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~--~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+ +||+++|+|.||..+++.|.+...  .+-+.+.+++  ......+.  +             ..|         +..
T Consensus         1 ~~-~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~--~~~~~~l~--~-------------~~g---------~~~   53 (272)
T PRK12491          1 MN-KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN--VSNLKNAS--D-------------KYG---------ITI   53 (272)
T ss_pred             CC-CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC--HHHHHHHH--H-------------hcC---------cEE
Confidence            54 689999999999999999987642  2223455543  21111110  0             001         112


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHH---hCCCCeEEEc
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL---KGGAKKVIIS  124 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~---~~G~~~vvis  124 (265)
                      .  .+.+++   ..++|+||.|++.....+..+.+.   +.+.  +++|
T Consensus        54 ~--~~~~e~---~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~--lvIS   95 (272)
T PRK12491         54 T--TNNNEV---ANSADILILSIKPDLYSSVINQIKDQIKNDV--IVVT   95 (272)
T ss_pred             e--CCcHHH---HhhCCEEEEEeChHHHHHHHHHHHHhhcCCc--EEEE
Confidence            1  223333   146899999999877766665543   3443  6664

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.37  E-value=0.016  Score=51.54  Aligned_cols=33  Identities=27%  Similarity=0.427  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+||+|+|+|.+|..++..+..++-.+++ +.|.
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~-L~D~   34 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVV-LFDI   34 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEE-EEEC
Confidence            57999999999999999999877533543 4454

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=96.31  E-value=0.0095  Score=49.82  Aligned_cols=91  Identities=21%  Similarity=0.142  Sum_probs=55.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |++++|+|.|.+|..+.+.|.... .|++..+++..+.  .+.+.+               .-+       ..+...  .
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag-~eV~igs~r~~~~--~~a~a~---------------~l~-------~~i~~~--~   53 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAG-HEVIIGSSRGPKA--LAAAAA---------------ALG-------PLITGG--S   53 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCC-CeEEEecCCChhH--HHHHHH---------------hhc-------cccccC--C
Confidence            489999999999999999998774 6766555543221  111100               000       001111  1


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHh--CCCCeEEEcCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK--GGAKKVIISAP  126 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~--~G~~~vvis~~  126 (265)
                      ..+..    +..|+||.+.|-.......+.+..  .|+  +||+..
T Consensus        54 ~~dA~----~~aDVVvLAVP~~a~~~v~~~l~~~~~~K--IvID~t   93 (211)
T COG2085          54 NEDAA----ALADVVVLAVPFEAIPDVLAELRDALGGK--IVIDAT   93 (211)
T ss_pred             hHHHH----hcCCEEEEeccHHHHHhHHHHHHHHhCCe--EEEecC
Confidence            12222    568999999998877777766653  344  777433

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.31  E-value=0.0066  Score=52.59  Aligned_cols=33  Identities=30%  Similarity=0.412  Sum_probs=25.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcCC-CeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~   36 (265)
                      |||||+|+|.+|..+++.|.+.. ..+.+.+.++
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r   34 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR   34 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence            38999999999999999998764 2333456655

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=96.31  E-value=0.013  Score=59.04  Aligned_cols=103  Identities=14%  Similarity=0.180  Sum_probs=57.7

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCC--------CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECC
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE   73 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p--------~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g   73 (265)
                      +.++|+|+|+|.+|+.++++|.++.        ++++++|.+.....-. ..-+  +  ...|. ..   ...       
T Consensus       464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~-~~g~--~--~~~~~-~~---~~~-------  527 (819)
T PRK09436        464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLD-EHGI--D--LDNWR-EE---LAE-------  527 (819)
T ss_pred             ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccC-CCCC--C--HHHHH-HH---Hhh-------
Confidence            3689999999999999999997643        4778888764322100 0000  0  00111 00   000       


Q ss_pred             EEEEEEecCCCCCC-Ccc---cccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC
Q 024565           74 KPVTVFGVRNPEEI-PWA---ETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP  126 (265)
Q Consensus        74 ~~~~~~~~~~~~~~-~~~---~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~  126 (265)
                          .....+.+.+ ++-   ....|+|+|||+..........++++|+  .|+++.
T Consensus       528 ----~~~~~~~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~--~VVtaN  578 (819)
T PRK09436        528 ----AGEPFDLDRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGF--HVVTPN  578 (819)
T ss_pred             ----ccCCCCHHHHHHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCC--EEEcCC
Confidence                0000000000 000   0135899999998766777789999998  666544

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.31  E-value=0.012  Score=52.50  Aligned_cols=32  Identities=19%  Similarity=0.354  Sum_probs=27.2

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||.|.|+ |++|+.+++.|.++. .++.++...
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R~   33 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEG-YQVRCLVRN   33 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEEcC
Confidence            48999999 999999999999874 788777643

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.29  E-value=0.023  Score=46.63  Aligned_cols=32  Identities=31%  Similarity=0.472  Sum_probs=28.4

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||||+|+ |.+|.+++.-+..+. -|+++|+..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivRn   33 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVRN   33 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCC-CeeEEEEeC
Confidence            58999999 999999999888774 899999864

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.29  E-value=0.0091  Score=53.14  Aligned_cols=36  Identities=22%  Similarity=0.181  Sum_probs=26.3

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +..||+|+|+|.+|..+++.|.+.....-+.+.+++
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~   40 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS   40 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            347899999999999999999876432223455553

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.22  E-value=0.0075  Score=53.27  Aligned_cols=32  Identities=31%  Similarity=0.609  Sum_probs=25.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||||+|+|.+|..+++.|.+. +.++. +.++
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~-g~~v~-~~d~   33 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKA-GYSLV-VYDR   33 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHC-CCeEE-EEcC
Confidence            47999999999999999999876 46665 4555

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.21  E-value=0.032  Score=49.24  Aligned_cols=30  Identities=23%  Similarity=0.491  Sum_probs=24.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      +.||||+|+|.+|..++..++.+ +++++..
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~   34 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARA-GVDVLVF   34 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhC-CCEEEEE
Confidence            35899999999999999999887 4665544

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.17  E-value=0.029  Score=50.11  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=26.4

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |+++||+|+|+|.+|..+...|.+.. .++..+.
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~   35 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLARAG-FDVHFLL   35 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHHCC-CeEEEEE
Confidence            45689999999999999999998763 5555444

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.17  E-value=0.013  Score=51.49  Aligned_cols=32  Identities=25%  Similarity=0.543  Sum_probs=24.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCC---eEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQRDD---VELVAVND   35 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~---~el~~v~~   35 (265)
                      +||+|+|+|.+|..+++.|.+...   .++..+..
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r   36 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS   36 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence            789999999999999999987642   35554443

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.10  E-value=0.014  Score=52.05  Aligned_cols=31  Identities=23%  Similarity=0.342  Sum_probs=24.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +||+|+|+|.+|..++..|.+.. .++. +.++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g-~~V~-~~~r   32 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNG-HDVT-LWAR   32 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEE-EEEC
Confidence            69999999999999999998764 5653 4444

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.06  E-value=0.017  Score=52.88  Aligned_cols=70  Identities=21%  Similarity=0.326  Sum_probs=47.6

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      .+.||+|+|. |.||+.+++.|.+..+.++.++ |+. +           .              +           .  
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~-D~~-d-----------~--------------~-----------~--   42 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH-DPA-D-----------P--------------G-----------S--   42 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE-cCC-c-----------c--------------c-----------c--
Confidence            3679999999 9999999999986535665433 221 0           0              0           0  


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK  115 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~  115 (265)
                       .++++.   ..++|+||.|+|-....+..+++..
T Consensus        43 -~~~~~~---v~~aDlVilavPv~~~~~~l~~l~~   73 (370)
T PRK08818         43 -LDPATL---LQRADVLIFSAPIRHTAALIEEYVA   73 (370)
T ss_pred             -CCHHHH---hcCCCEEEEeCCHHHHHHHHHHHhh
Confidence             111111   1578999999999988888876643

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.03  E-value=0.029  Score=49.39  Aligned_cols=25  Identities=32%  Similarity=0.624  Sum_probs=22.6

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCC
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRD   26 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p   26 (265)
                      ++++|+|+|+|.||+.+++.|.+..
T Consensus         2 ~~~~v~IvG~GliG~s~a~~l~~~g   26 (279)
T COG0287           2 ASMKVGIVGLGLMGGSLARALKEAG   26 (279)
T ss_pred             CCcEEEEECCchHHHHHHHHHHHcC
Confidence            4689999999999999999999764

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.00  E-value=0.016  Score=50.70  Aligned_cols=79  Identities=18%  Similarity=0.155  Sum_probs=47.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCC-eEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~-~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      +||+|+|+|.+|..+++.|.+... .++. +.+++.+.  .....                ..|  +      ....  .
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~-~~d~~~~~--~~~~~----------------~~g--~------~~~~--~   51 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVY-GYDHNELH--LKKAL----------------ELG--L------VDEI--V   51 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEE-EEcCCHHH--HHHHH----------------HCC--C------Cccc--C
Confidence            389999999999999999987642 3443 34443121  11000                011  0      0011  1


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK  115 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~  115 (265)
                      +++++    .++|+||.|+|.....+.+..+..
T Consensus        52 ~~~~~----~~aD~Vilavp~~~~~~~~~~l~~   80 (275)
T PRK08507         52 SFEEL----KKCDVIFLAIPVDAIIEILPKLLD   80 (275)
T ss_pred             CHHHH----hcCCEEEEeCcHHHHHHHHHHHhc
Confidence            23333    248999999999887777766543

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.92  E-value=0.045  Score=46.35  Aligned_cols=36  Identities=22%  Similarity=0.437  Sum_probs=31.6

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI   38 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~   38 (265)
                      +.+||+|.|+|.+|+.+++.|.+. +..+++|+|...
T Consensus        22 ~g~~vaIqGfGnVG~~~a~~L~~~-G~~vV~vsD~~g   57 (217)
T cd05211          22 EGLTVAVQGLGNVGWGLAKKLAEE-GGKVLAVSDPDG   57 (217)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCCC
Confidence            457999999999999999999987 588999998753

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.90  E-value=0.048  Score=49.10  Aligned_cols=31  Identities=16%  Similarity=0.321  Sum_probs=25.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |+||+|+|+|.+|..++..|.++. .++..+.
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~   32 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAG-ADVTLIG   32 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcC-CcEEEEe
Confidence            479999999999999999998874 5655554

>PLN02688 pyrroline-5-carboxylate reductase

Probab=95.87  E-value=0.024  Score=49.15  Aligned_cols=23  Identities=22%  Similarity=0.547  Sum_probs=20.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCC
Q 024565            4 VKIGINGFGRIGRLVARVILQRD   26 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p   26 (265)
                      |||+++|+|.||..+++.|.+..
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g   23 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASG   23 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCC
Confidence            57999999999999999998764

>PRK07680 late competence protein ComER; Validated

Probab=95.83  E-value=0.019  Score=50.26  Aligned_cols=34  Identities=21%  Similarity=0.482  Sum_probs=25.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCe--EEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDV--ELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~--el~~v~~~~   37 (265)
                      |||+|+|+|.+|..+++.|.+...+  +-+.+.+++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~   36 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRT   36 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence            3799999999999999999876522  335566653

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=95.77  E-value=0.045  Score=51.47  Aligned_cols=83  Identities=14%  Similarity=0.207  Sum_probs=59.5

Q ss_pred             CccEEEEEcc----ChhHHHHHHHHHcCCCe--EEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEE
Q 024565            2 GKVKIGINGF----GRIGRLVARVILQRDDV--ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP   75 (265)
Q Consensus         2 ~~i~vgI~G~----G~~G~~l~~~L~~~p~~--el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~   75 (265)
                      ...+|+|+|+    |..|..+++.|.++. +  ++..|+-.. .           +                   +.|  
T Consensus         6 ~p~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~Vnp~~-~-----------~-------------------i~G--   51 (447)
T TIGR02717         6 NPKSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPVNPKA-G-----------E-------------------ILG--   51 (447)
T ss_pred             CCCEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEECCCC-C-----------c-------------------cCC--
Confidence            4578999999    678999999999875 3  444443211 0           0                   011  


Q ss_pred             EEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           76 VTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      ++++  .+.++++   ..+|+++.|+|.....+.++++.+.|+|.+++
T Consensus        52 ~~~~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi   94 (447)
T TIGR02717        52 VKAY--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV   94 (447)
T ss_pred             cccc--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence            2333  3455553   56899999999999999999999999998876

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.71  E-value=0.014  Score=52.50  Aligned_cols=87  Identities=18%  Similarity=0.193  Sum_probs=55.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      .+++|+|+|.+|+.+++.+....+++.+.|.++..+ ...++..+  ..   .+         +  +     .+..+  .
T Consensus       128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~--~~---~~---------~--~-----~~~~~--~  184 (325)
T PRK08618        128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEI--QS---KF---------N--T-----EIYVV--N  184 (325)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHH--HH---hc---------C--C-----cEEEe--C
Confidence            589999999999999998876667888999987532 22221100  00   00         1  0     11222  3


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      +.++.   ..++|+|+.|||.. +.... ..++.|+
T Consensus       185 ~~~~~---~~~aDiVi~aT~s~-~p~i~-~~l~~G~  215 (325)
T PRK08618        185 SADEA---IEEADIIVTVTNAK-TPVFS-EKLKKGV  215 (325)
T ss_pred             CHHHH---HhcCCEEEEccCCC-CcchH-HhcCCCc
Confidence            33333   15789999999987 55555 7788997

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.67  E-value=0.019  Score=45.19  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=28.8

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +||+|+|+ |.+|..++..|...+-.+-+.+.|..
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~   35 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN   35 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence            58999999 99999999999988766656677764

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=95.64  E-value=0.034  Score=51.76  Aligned_cols=112  Identities=14%  Similarity=0.193  Sum_probs=63.1

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCC-eEEEEEeccccChhhhhhheeecccCCcccccceeeeCC---ceEE--ECCE-
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD---KTLL--FGEK-   74 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~-~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~--~~g~-   74 (265)
                      ++||+|+|+ |-||...++.+.++|+ |+++++...+ ..+.++...+  .-.+++-    ...+.   +.+.  ..+. 
T Consensus        57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~-Ni~lL~~q~~--~f~p~~v----~v~d~~~~~~l~~~l~~~~  129 (454)
T PLN02696         57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGS-NVTLLADQVR--KFKPKLV----AVRNESLVDELKEALADLD  129 (454)
T ss_pred             ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCC-CHHHHHHHHH--HhCCCEE----EEcCHHHHHHHHHhhcCCC
Confidence            479999999 9999999999999976 9999998754 3333322110  0011110    00000   0000  0000 


Q ss_pred             -EEEEEe-cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           75 -PVTVFG-VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        75 -~~~~~~-~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       ...++. .++..++ -...++|+|+.+........-.-.++++|. .+.+
T Consensus       130 ~~~~vl~G~egl~~l-a~~~evDiVV~AIvG~aGL~pTl~AIkaGK-~VAL  178 (454)
T PLN02696        130 DKPEIIPGEEGIVEV-ARHPEAVTVVTGIVGCAGLKPTVAAIEAGK-DIAL  178 (454)
T ss_pred             CCcEEEECHHHHHHH-HcCCCCCEEEEeCccccchHHHHHHHHCCC-cEEE
Confidence             112221 1122222 122568999999988777767778899996 3444

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.55  E-value=0.041  Score=43.97  Aligned_cols=91  Identities=14%  Similarity=0.092  Sum_probs=50.0

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCC
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP   84 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~   84 (265)
                      ||+|+|+|.+|..++..|.++. .+ +.+.++..  +....+.   ..+.+..     ...+..+..   .+.+.  .|+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g-~~-V~l~~~~~--~~~~~i~---~~~~n~~-----~~~~~~l~~---~i~~t--~dl   63 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG-HE-VTLWGRDE--EQIEEIN---ETRQNPK-----YLPGIKLPE---NIKAT--TDL   63 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT-EE-EEEETSCH--HHHHHHH---HHTSETT-----TSTTSBEET---TEEEE--SSH
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CE-EEEEeccH--HHHHHHH---HhCCCCC-----CCCCcccCc---ccccc--cCH
Confidence            7999999999999999999886 33 34444432  2111111   1111100     000101111   13332  455


Q ss_pred             CCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565           85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLK  115 (265)
Q Consensus        85 ~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~  115 (265)
                      ++.   ..+.|+++.|+|+...++..+.+..
T Consensus        64 ~~a---~~~ad~IiiavPs~~~~~~~~~l~~   91 (157)
T PF01210_consen   64 EEA---LEDADIIIIAVPSQAHREVLEQLAP   91 (157)
T ss_dssp             HHH---HTT-SEEEE-S-GGGHHHHHHHHTT
T ss_pred             HHH---hCcccEEEecccHHHHHHHHHHHhh
Confidence            433   2678999999999999888776644

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.52  E-value=0.076  Score=47.64  Aligned_cols=34  Identities=38%  Similarity=0.530  Sum_probs=27.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .+||+|+|+|.+|..++.++..+.-.+ +.+.|..
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di~   38 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGD-VVLYDVI   38 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEECC
Confidence            579999999999999999888775345 6666664

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=95.48  E-value=0.062  Score=47.98  Aligned_cols=33  Identities=21%  Similarity=0.210  Sum_probs=27.2

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ||+|+|+|.+|..++.+|..++-++-+.+.|..
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   33 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN   33 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            799999999999999999888766656666653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00325 malate dehydrogenase; Provisional

Probab=95.46  E-value=0.1  Score=46.90  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=27.4

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +|.||+|+|+ |.+|..++..|..++...-+.+.|.
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            3679999999 9999999999986655544455554

>PLN02712 arogenate dehydrogenase

Probab=95.40  E-value=0.026  Score=55.65  Aligned_cols=31  Identities=29%  Similarity=0.637  Sum_probs=26.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ++||||||+|.+|+.+++.|.++. +++.++.
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G-~~V~~~d   82 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQG-HTVLAHS   82 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCC-CEEEEEe
Confidence            579999999999999999998874 6776543

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.40  E-value=0.03  Score=50.05  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=28.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..||+|+|+|.+|..++..|...+-..-+.+.|..
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~   37 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV   37 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            57999999999999999999888665555666654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.37  E-value=0.076  Score=47.27  Aligned_cols=28  Identities=21%  Similarity=0.209  Sum_probs=23.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELV   31 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~   31 (265)
                      .+||+|+|+|.+|..+.+.|.+.. .+|.
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G-~~V~   31 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANG-HRVR   31 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCC-CEEE
Confidence            579999999999999999998774 4553

>PRK09414 glutamate dehydrogenase; Provisional

Probab=95.36  E-value=0.072  Score=49.88  Aligned_cols=103  Identities=13%  Similarity=0.182  Sum_probs=58.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-----hhhhhheeecccC-CcccccceeeeCCceEEECCEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-----DYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGEKPV   76 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~   76 (265)
                      -.||+|.|+|.+|+.+++.|.+. +..|++|+|.+...     =.+..++++-... +...     .... .  . +  .
T Consensus       232 g~rVaIqGfGnVG~~~A~~L~~~-GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~-----~~~~-~--~-~--~  299 (445)
T PRK09414        232 GKRVVVSGSGNVAIYAIEKAQQL-GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRIS-----EYAE-E--F-G--A  299 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchh-----hhhh-h--c-C--C
Confidence            47999999999999999999876 59999998853211     0011111110000 0010     0000 0  0 0  0


Q ss_pred             EEEecCCCCCCCcccccccEEEEecCCcc-cHHhHHHHHhCCCCeEEE
Q 024565           77 TVFGVRNPEEIPWAETGAEYVVESTGVFT-DKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~DvV~~at~~~~-~~~~~~~~~~~G~~~vvi  123 (265)
                      ..   .+.+++ |. .++|+.+-|+.... +.+.+..+.+.+|| +|+
T Consensus       300 ~~---i~~~~i-~~-~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv  341 (445)
T PRK09414        300 EY---LEGGSP-WS-VPCDIALPCATQNELDEEDAKTLIANGVK-AVA  341 (445)
T ss_pred             ee---cCCccc-cc-cCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence            11   234444 53 57999999987654 67777777766775 444

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.35  E-value=0.034  Score=49.95  Aligned_cols=36  Identities=28%  Similarity=0.387  Sum_probs=27.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT   39 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~   39 (265)
                      +.||+|+|+|.+|..++..+..+.-.+ +.+.|...+
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~~~   41 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIVKN   41 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCCc
Confidence            358999999999999999888765346 677776433

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=95.33  E-value=0.03  Score=47.35  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=24.0

Q ss_pred             cEEEEEc-cChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G-~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||+|+| +|.+|..+++.|.+.. .++.. .++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v-~~r   32 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAG-NKIII-GSR   32 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCC-CEEEE-EEc
Confidence            4899998 6999999999998774 45543 344

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=95.28  E-value=0.031  Score=48.74  Aligned_cols=90  Identities=17%  Similarity=0.182  Sum_probs=55.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCC--eEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~--~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+|||++|+|.||..+++-|.+.+.  -+-+.|+++..+-..  ++.      ..|         |         +.. .
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~------~~~---------g---------~~~-~   53 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALA------AEY---------G---------VVT-T   53 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHH------HHc---------C---------Ccc-c
Confidence            4799999999999999999998862  345666666433221  111      011         1         011 1


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHh--CCCCeEEEcC
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK--GGAKKVIISA  125 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~--~G~~~vvis~  125 (265)
                       .+.++.   ....|+||.|.-+....+...++..  .+.  .|||.
T Consensus        54 -~~~~~~---~~~advv~LavKPq~~~~vl~~l~~~~~~~--lvISi   94 (266)
T COG0345          54 -TDNQEA---VEEADVVFLAVKPQDLEEVLSKLKPLTKDK--LVISI   94 (266)
T ss_pred             -CcHHHH---HhhCCEEEEEeChHhHHHHHHHhhcccCCC--EEEEE
Confidence             222222   2568999999998877777766643  443  55643

>PRK06046 alanine dehydrogenase; Validated

Probab=95.27  E-value=0.024  Score=50.99  Aligned_cols=35  Identities=29%  Similarity=0.225  Sum_probs=31.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI   38 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~   38 (265)
                      .++||+|+|..|+.+++.+...+.++.+.|.++..
T Consensus       130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~  164 (326)
T PRK06046        130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK  164 (326)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH
Confidence            58999999999999999999888899999999853

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.27  E-value=0.041  Score=49.40  Aligned_cols=31  Identities=16%  Similarity=0.262  Sum_probs=25.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      +|||+|+|+|.+|..++..|.+.. .++....
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~   34 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKG-VPVRLWA   34 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCC-CeEEEEe
Confidence            579999999999999999998774 5554443

>PLN02602 lactate dehydrogenase

Probab=95.21  E-value=0.037  Score=50.31  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=27.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .||+|+|+|.+|..++.+|...+-+.-+.+.|..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~   71 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN   71 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            6999999999999999999887655555666653

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.20  E-value=0.15  Score=45.72  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=28.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..||+|+|+|.+|..++.+|...+-+.-+.+.|..
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~   40 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN   40 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            36999999999999999999988766555666653

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.14  E-value=0.095  Score=46.72  Aligned_cols=33  Identities=21%  Similarity=0.306  Sum_probs=26.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +||+|+|+|++|..++..++.+...+ +.+.|..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~-VvlvDi~   34 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELAD-LVLLDVV   34 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCe-EEEEeCC
Confidence            58999999999999999998875445 4555553

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=95.11  E-value=0.068  Score=46.60  Aligned_cols=31  Identities=19%  Similarity=0.345  Sum_probs=25.3

Q ss_pred             EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +|.|.|+ |.+|+.+++.|.+. +.++.++...
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~~~R~   32 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAA-SVPFLVASRS   32 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhC-CCcEEEEeCC
Confidence            4889999 99999999999876 4677666643

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=95.04  E-value=0.028  Score=49.81  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=25.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .||+|+|+|.+|..+++.|.++. .++ .+++++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V-~v~d~~   33 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQG-HQL-QVFDVN   33 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCC-CeE-EEEcCC
Confidence            58999999999999999999875 555 455553

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=95.03  E-value=0.096  Score=46.77  Aligned_cols=31  Identities=32%  Similarity=0.550  Sum_probs=25.4

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCe-EEEEEe
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDV-ELVAVN   34 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~-el~~v~   34 (265)
                      +||+|+|+ |++|..++..|...+.. +++.+.
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd   33 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS   33 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence            58999999 99999999999988754 455543

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.02  E-value=0.096  Score=46.11  Aligned_cols=31  Identities=32%  Similarity=0.455  Sum_probs=24.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |||+|+|+|.+|..++..|.+.. .++..+..
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r   31 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAG-HDVTLVAR   31 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CeEEEEEC
Confidence            47999999999999999998764 56655543

>PLN00016 RNA-binding protein; Provisional

Probab=95.02  E-value=0.079  Score=48.44  Aligned_cols=33  Identities=24%  Similarity=0.232  Sum_probs=28.1

Q ss_pred             ccEEEEE----cc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGIN----GF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~----G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||.|.    |+ |++|+.+++.|.+.. .+|.++...
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~   89 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRG   89 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecC
Confidence            4789999    99 999999999999874 688777654

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=94.99  E-value=0.17  Score=45.09  Aligned_cols=33  Identities=21%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +||+|+|+|.+|..++.+|....-..-..+.|.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi   33 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDI   33 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEc
Confidence            589999999999999999977653313344444

>PLN02712 arogenate dehydrogenase

Probab=94.96  E-value=0.066  Score=52.84  Aligned_cols=31  Identities=32%  Similarity=0.689  Sum_probs=25.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ++||||||+|.||+.+++.|.+.. .++.+..
T Consensus       369 ~~kIgIIGlG~mG~slA~~L~~~G-~~V~~~d  399 (667)
T PLN02712        369 KLKIAIVGFGNFGQFLAKTMVKQG-HTVLAYS  399 (667)
T ss_pred             CCEEEEEecCHHHHHHHHHHHHCc-CEEEEEE
Confidence            589999999999999999998764 6766443

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=94.89  E-value=0.059  Score=48.51  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=25.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ..+|||+|+|.+|..+++.|.... ++++...
T Consensus        17 gktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~~   47 (330)
T PRK05479         17 GKKVAIIGYGSQGHAHALNLRDSG-VDVVVGL   47 (330)
T ss_pred             CCEEEEEeeHHHHHHHHHHHHHCC-CEEEEEE
Confidence            478999999999999999998774 6765443

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=94.83  E-value=0.042  Score=48.74  Aligned_cols=31  Identities=29%  Similarity=0.613  Sum_probs=25.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||||+|+|.+|..+++.|.++. .++.. .++
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g-~~V~~-~dr   31 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRG-HDCVG-YDH   31 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCC-CEEEE-EEC
Confidence            38999999999999999998774 66654 455

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.77  E-value=0.1  Score=48.39  Aligned_cols=30  Identities=27%  Similarity=0.484  Sum_probs=24.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |||+|+|+|++|..++..|.+.. .++.++.
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G-~~V~~~d   30 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLG-HEVTGVD   30 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcC-CeEEEEE
Confidence            38999999999999999998764 5665553

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=94.69  E-value=0.12  Score=47.46  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=21.2

Q ss_pred             ccEEEEEc-cChhHHHHHHHHHcCC
Q 024565            3 KVKIGING-FGRIGRLVARVILQRD   26 (265)
Q Consensus         3 ~i~vgI~G-~G~~G~~l~~~L~~~p   26 (265)
                      +.||+|+| +|.+|+.+++.|.+..
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G  122 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSG  122 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCC
Confidence            47899999 6999999999999764

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=94.62  E-value=0.045  Score=49.23  Aligned_cols=87  Identities=22%  Similarity=0.242  Sum_probs=54.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      .++||+|+|.+|+.+++.+.....++-+.|.+++.+- +.++..+      ..+         |       ..+...  .
T Consensus       129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~------~~~---------g-------~~v~~~--~  184 (325)
T TIGR02371       129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRA------SDY---------E-------VPVRAA--T  184 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------Hhh---------C-------CcEEEe--C
Confidence            6899999999999999999887778999999885332 2221100      000         1       011222  3


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      ++++.   ..++|+|+.|||... .-.....++.|+
T Consensus       185 ~~~ea---v~~aDiVitaT~s~~-P~~~~~~l~~g~  216 (325)
T TIGR02371       185 DPREA---VEGCDILVTTTPSRK-PVVKADWVSEGT  216 (325)
T ss_pred             CHHHH---hccCCEEEEecCCCC-cEecHHHcCCCC
Confidence            44443   267999999998743 212234568887

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=94.59  E-value=0.085  Score=47.12  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=26.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..||+|+|+|.+|+.+++.|..+ +.+-+.+++++
T Consensus       178 ~~~V~ViGaG~iG~~~a~~L~~~-g~~~V~v~~r~  211 (311)
T cd05213         178 GKKVLVIGAGEMGELAAKHLAAK-GVAEITIANRT  211 (311)
T ss_pred             CCEEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            47899999999999999999874 34555666664

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PLN00106 malate dehydrogenase

Probab=94.58  E-value=0.22  Score=44.81  Aligned_cols=34  Identities=21%  Similarity=0.270  Sum_probs=27.3

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ..||+|+|+ |.+|..++..|..++.++-..+.|.
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di   52 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDI   52 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEec
Confidence            469999999 9999999999997765554555554

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.55  E-value=0.1  Score=48.70  Aligned_cols=30  Identities=30%  Similarity=0.423  Sum_probs=25.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      +|||||+|.||+|..++..|.+.  ++++++-
T Consensus         6 ~mkI~vIGlGyvGlpmA~~la~~--~~V~g~D   35 (425)
T PRK15182          6 EVKIAIIGLGYVGLPLAVEFGKS--RQVVGFD   35 (425)
T ss_pred             CCeEEEECcCcchHHHHHHHhcC--CEEEEEe
Confidence            57999999999999999998763  7776654

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=94.54  E-value=0.18  Score=47.19  Aligned_cols=23  Identities=13%  Similarity=0.261  Sum_probs=21.4

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcC
Q 024565            3 KVKIGINGF-GRIGRLVARVILQR   25 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~   25 (265)
                      .+||+|+|+ |.+|..++..|...
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~  123 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASG  123 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhc
Confidence            589999999 99999999999877

>PRK06444 prephenate dehydrogenase; Provisional

Probab=94.47  E-value=0.095  Score=43.70  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=18.7

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcC
Q 024565            4 VKIGINGF-GRIGRLVARVILQR   25 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~   25 (265)
                      |||+|+|+ |.+|+.+.+.+.+.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~   23 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDN   23 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhC
Confidence            48999999 99999999876543

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.45  E-value=0.15  Score=48.75  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=25.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .||||+|+|.||..++..++.+ +++|+ +.+.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~a-G~~V~-l~D~   38 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQA-GHTVL-LYDA   38 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEE-EEeC
Confidence            5799999999999999999877 47765 4444

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=94.45  E-value=0.068  Score=42.13  Aligned_cols=34  Identities=21%  Similarity=0.195  Sum_probs=27.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..||+|+|+|.+|+.+++.|.++. .+.+.+.++.
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~   52 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNRT   52 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCC
Confidence            478999999999999999998875 4445566653

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK05086 malate dehydrogenase; Provisional

Probab=94.42  E-value=0.32  Score=43.52  Aligned_cols=33  Identities=21%  Similarity=0.306  Sum_probs=25.2

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHc-CCCeEEEEEecc
Q 024565            4 VKIGINGF-GRIGRLVARVILQ-RDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~-~p~~el~~v~~~   36 (265)
                      |||+|+|+ |.+|..++..|.. .+....+.+.+.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~   35 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDI   35 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEec
Confidence            58999999 9999999998855 454455555554

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.40  E-value=0.17  Score=44.71  Aligned_cols=30  Identities=17%  Similarity=0.366  Sum_probs=24.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |||+|+|+|.+|..++..|.+.. .++..+.
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~~   30 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFLV   30 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CceEEEe
Confidence            48999999999999999998763 4555544

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=94.40  E-value=0.26  Score=44.00  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=26.2

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||+|+|+ |.+|..++..|..++-..-+.+.|.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi   34 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI   34 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence            58999999 9999999999987765544455554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.35  E-value=0.1  Score=46.49  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=27.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |||+|+|+|.+|..++..|...+-.+-+.+.|..
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~   34 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN   34 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            4899999999999999999987645555666654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=94.33  E-value=0.19  Score=44.51  Aligned_cols=85  Identities=16%  Similarity=0.176  Sum_probs=58.5

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      +-||-|.|- |.+|..+++.|.+.+ ++.++-+.+....+         .                   +.|  ++.+  
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g-~~~v~pVnp~~~~~---------~-------------------v~G--~~~y--   54 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYG-TNIVGGVTPGKGGT---------T-------------------VLG--LPVF--   54 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCC-CCEEEEECCCCCCC---------e-------------------EeC--eecc--
Confidence            468999999 999999999998875 33332222310010         0                   011  2343  


Q ss_pred             CCCCCCCccccc--ccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETG--AEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~--~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+.++++   ..  +|+++.|+|.....+.++++.++|+|.++|
T Consensus        55 ~sv~dlp---~~~~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI   95 (291)
T PRK05678         55 NTVAEAV---EATGANASVIYVPPPFAADAILEAIDAGIDLIVC   95 (291)
T ss_pred             CCHHHHh---hccCCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence            3455553   33  899999999999999999999999998776

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.26  E-value=0.061  Score=47.53  Aligned_cols=31  Identities=26%  Similarity=0.423  Sum_probs=25.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .+|+|+|+|.+|+.+++.|..+. +++. +.++
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G-~~V~-v~~R  182 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALG-ARVF-VGAR  182 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCC-CEEE-EEeC
Confidence            58999999999999999999885 6655 4444

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=94.09  E-value=0.14  Score=45.94  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=27.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      -.+|||||+|.+|+.+++.|... ++++....++
T Consensus        16 gKtVGIIG~GsIG~amA~nL~d~-G~~ViV~~r~   48 (335)
T PRK13403         16 GKTVAVIGYGSQGHAQAQNLRDS-GVEVVVGVRP   48 (335)
T ss_pred             cCEEEEEeEcHHHHHHHHHHHHC-cCEEEEEECc
Confidence            36899999999999999999877 4887655443

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=94.04  E-value=0.085  Score=46.00  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=32.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .++|-+.|.|++|.+.+|.|..+|++++++....+
T Consensus         2 ~~~vvqyGtG~vGv~air~l~akpe~elvgawv~s   36 (350)
T COG3804           2 SLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHS   36 (350)
T ss_pred             CceeEEeccchHHHHHHHHHHcCCCCceEEEEecC
Confidence            48999999999999999999999999999988764

>PRK08605 D-lactate dehydrogenase; Validated

Probab=93.96  E-value=0.11  Score=46.94  Aligned_cols=30  Identities=33%  Similarity=0.565  Sum_probs=23.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVA   32 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~   32 (265)
                      -++|||+|+|.+|+.+++.|.+.-++++.+
T Consensus       146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~  175 (332)
T PRK08605        146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVA  175 (332)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCEEEE
Confidence            368999999999999999984322466554

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=93.95  E-value=0.11  Score=46.18  Aligned_cols=31  Identities=29%  Similarity=0.453  Sum_probs=25.5

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ||||||+|.+|..+++.|.++. .+|. +.++.
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g-~~v~-v~dr~   32 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDG-HEVV-GYDVN   32 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCC-CEEE-EEECC
Confidence            7999999999999999998864 6665 45553

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.94  E-value=0.077  Score=49.40  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=28.5

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |.++||+|+|.|++|..++..|.++. .++.++.
T Consensus         1 m~~~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D   33 (415)
T PRK11064          1 MSFETISVIGLGYIGLPTAAAFASRQ-KQVIGVD   33 (415)
T ss_pred             CCccEEEEECcchhhHHHHHHHHhCC-CEEEEEe
Confidence            88899999999999999999999874 6766654

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=93.93  E-value=0.13  Score=45.55  Aligned_cols=32  Identities=34%  Similarity=0.564  Sum_probs=25.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |||||+|+|.+|..+++.|.+.. .++. +.+++
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g-~~v~-v~dr~   32 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGG-HEVV-GYDRN   32 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCC-CeEE-EEECC
Confidence            38999999999999999998774 6654 45553

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.89  E-value=0.081  Score=46.41  Aligned_cols=32  Identities=38%  Similarity=0.550  Sum_probs=27.2

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |++.||+|+|+|++|..++..+..+. .+++.+
T Consensus         1 ~~~~kI~VIG~G~mG~~ia~~la~~g-~~V~~~   32 (282)
T PRK05808          1 MGIQKIGVIGAGTMGNGIAQVCAVAG-YDVVMV   32 (282)
T ss_pred             CCccEEEEEccCHHHHHHHHHHHHCC-CceEEE
Confidence            77789999999999999999999884 566554

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=93.86  E-value=0.054  Score=47.72  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=25.0

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ||||+|+|.+|..+++.|.++. +++. +.+++
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G-~~V~-~~dr~   31 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAG-YQLH-VTTIG   31 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCC-CeEE-EEcCC
Confidence            6999999999999999999774 6765 44553

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.82  E-value=0.22  Score=45.94  Aligned_cols=32  Identities=34%  Similarity=0.578  Sum_probs=27.2

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      ++||.|.|+ |++|+.+++.|.++. .+++++..
T Consensus        60 ~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R   92 (390)
T PLN02657         60 DVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAR   92 (390)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEe
Confidence            579999999 999999999998874 67777654

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=93.82  E-value=0.22  Score=44.32  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=25.0

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ||+|+|+|.+|..++..|...+-..-+.+.|.
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~   33 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDI   33 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            89999999999999999988764423444444

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK07574 formate dehydrogenase; Provisional

Probab=93.81  E-value=0.083  Score=48.62  Aligned_cols=29  Identities=41%  Similarity=0.544  Sum_probs=24.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      ++|||+|+|.||+.+++.|... ++++.+.
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~f-G~~V~~~  221 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPF-DVKLHYT  221 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEE
Confidence            6899999999999999999876 4776654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.80  E-value=0.083  Score=41.14  Aligned_cols=34  Identities=15%  Similarity=0.186  Sum_probs=27.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..|+.|+|+|-+|+.++..|..+ +++-+.|+.++
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            46899999999999999999988 46655566564

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=93.75  E-value=0.079  Score=46.51  Aligned_cols=31  Identities=29%  Similarity=0.482  Sum_probs=26.6

Q ss_pred             EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ||-|.|+ |..|.+|.+.|.  ++.+++++....
T Consensus         2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~   33 (281)
T COG1091           2 KILITGANGQLGTELRRALP--GEFEVIATDRAE   33 (281)
T ss_pred             cEEEEcCCChHHHHHHHHhC--CCceEEeccCcc
Confidence            4999999 999999999988  678888886654

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.74  E-value=0.13  Score=45.56  Aligned_cols=30  Identities=23%  Similarity=0.360  Sum_probs=24.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      ..||.|+|+|.+|+.+++.|.... .++...
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~  181 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALG-ANVTVG  181 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC-CEEEEE
Confidence            368999999999999999999875 665544

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=93.74  E-value=0.17  Score=45.31  Aligned_cols=90  Identities=16%  Similarity=0.132  Sum_probs=49.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      ++||+|+|+|..|..++..|.++. .+. .|..++. ....+   . .+....+|-       .|..++   ..+...  
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng~~V~-lw~r~~~-~~~~i---~-~~~~N~~yL-------p~i~lp---~~l~at--   62 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNGHEVR-LWGRDEE-IVAEI---N-ETRENPKYL-------PGILLP---PNLKAT--   62 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcCCeeE-EEecCHH-HHHHH---H-hcCcCcccc-------CCccCC---cccccc--
Confidence            479999999999999999999884 232 2222211 11111   1 111112221       010010   012221  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHH
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAH  113 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~  113 (265)
                      .|.++.   ..++|+|+++.|+...++.+.++
T Consensus        63 ~Dl~~a---~~~ad~iv~avPs~~~r~v~~~l   91 (329)
T COG0240          63 TDLAEA---LDGADIIVIAVPSQALREVLRQL   91 (329)
T ss_pred             cCHHHH---HhcCCEEEEECChHHHHHHHHHH
Confidence            344433   25699999999999888877664

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=93.74  E-value=0.1  Score=46.63  Aligned_cols=30  Identities=30%  Similarity=0.381  Sum_probs=25.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .+|||+|+|.||+++++.|... ++++.+..
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~af-G~~V~~~~  166 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTW-GFPLRCWS  166 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence            6899999999999999999976 47776553

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.68  E-value=0.19  Score=47.83  Aligned_cols=32  Identities=31%  Similarity=0.336  Sum_probs=25.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +||||||+|.||..++..|.++. ++|. +.++.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G-~~V~-v~D~~   36 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAG-IDVA-VFDPH   36 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC-CeEE-EEeCC
Confidence            58999999999999999999884 6654 55553

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=93.66  E-value=0.1  Score=46.21  Aligned_cols=30  Identities=27%  Similarity=0.392  Sum_probs=24.4

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||+||.|.||..+++.|.+.. +++. +.++
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~-v~~~   31 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAG-HQLH-VTTI   31 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCC-CeEE-EEeC
Confidence            7999999999999999999875 5654 4443

>PRK08655 prephenate dehydrogenase; Provisional

Probab=93.63  E-value=0.13  Score=48.17  Aligned_cols=29  Identities=31%  Similarity=0.575  Sum_probs=23.0

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |||+|+|+ |.+|..+++.|.+.. .++...
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~   30 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVT   30 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCC-CEEEEE
Confidence            48999985 999999999998764 555444

>PRK06545 prephenate dehydrogenase; Validated

Probab=93.59  E-value=0.14  Score=46.59  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             EEEEEccChhHHHHHHHHHcCC
Q 024565            5 KIGINGFGRIGRLVARVILQRD   26 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p   26 (265)
                      ||+|+|+|.||..+++.|.+..
T Consensus         2 ~I~iIG~GliG~siA~~L~~~G   23 (359)
T PRK06545          2 TVLIVGLGLIGGSLALAIKAAG   23 (359)
T ss_pred             eEEEEEeCHHHHHHHHHHHhcC
Confidence            7999999999999999998763

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=93.52  E-value=0.35  Score=42.96  Aligned_cols=32  Identities=25%  Similarity=0.303  Sum_probs=25.7

Q ss_pred             EEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            6 IGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         6 vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |+|+|+|++|..++..|...+-++-+.+.|..
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~   32 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            68999999999999999888755555666654

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=93.44  E-value=0.32  Score=42.96  Aligned_cols=87  Identities=18%  Similarity=0.182  Sum_probs=58.6

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      .-||-|.|. |..|..+++.|...+ +.+++=+.+....+         .            -.|         ++.+  
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~g-~~~v~~V~p~~~~~---------~------------v~G---------~~~y--   52 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAYG-TNIVGGVTPGKGGT---------T------------VLG---------LPVF--   52 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhCC-CCEEEEECCCCCcc---------e------------ecC---------eecc--
Confidence            358999999 999999999998775 44444222320010         0            011         3343  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+.++++.. .++|+++.|.|.....+.++++.++|+|.+++
T Consensus        53 ~sv~dlp~~-~~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI   93 (286)
T TIGR01019        53 DSVKEAVEE-TGANASVIFVPAPFAADAIFEAIDAGIELIVC   93 (286)
T ss_pred             CCHHHHhhc-cCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence            345555310 03799999999999999999999999988776

ATP citrate lyases appear to form an outgroup.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=93.41  E-value=0.14  Score=41.81  Aligned_cols=33  Identities=33%  Similarity=0.605  Sum_probs=26.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      -.+|||+|+|.||+++++.|.... +++.+....
T Consensus        36 g~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~~   68 (178)
T PF02826_consen   36 GKTVGIIGYGRIGRAVARRLKAFG-MRVIGYDRS   68 (178)
T ss_dssp             TSEEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred             CCEEEEEEEcCCcCeEeeeeecCC-ceeEEeccc
Confidence            368999999999999999999774 787766543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.37  E-value=0.34  Score=44.31  Aligned_cols=24  Identities=21%  Similarity=0.463  Sum_probs=21.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD   26 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p   26 (265)
                      ++||+|+|+|..|..++..|.++.
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~   34 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENT   34 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcC
Confidence            479999999999999999998763

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=93.36  E-value=0.46  Score=42.71  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=23.6

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeE
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVE   29 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~e   29 (265)
                      +++||+|+|+ |.+|..++..|...+-+.
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~   30 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFG   30 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCccc
Confidence            3689999999 999999999998776443

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=93.32  E-value=0.41  Score=42.73  Aligned_cols=85  Identities=16%  Similarity=0.219  Sum_probs=49.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEEC---C-EEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG---E-KPVTVF   79 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-~~~~~~   79 (265)
                      |||.|+|+|.+|..+...|.+.+ -.++.+.... ..+.+.                   +.|  |.+.   + ......
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~-~~~~l~-------------------~~G--L~i~~~~~~~~~~~~   57 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR-RLEALK-------------------KKG--LRIEDEGGNFTTPVV   57 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH-HHHHHH-------------------hCC--eEEecCCCccccccc
Confidence            58999999999999999999887 3444444332 122110                   001  1111   1 011122


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK  115 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~  115 (265)
                      ...+++..    ..+|+||.++-+....+..+.+..
T Consensus        58 ~~~~~~~~----~~~Dlviv~vKa~q~~~al~~l~~   89 (307)
T COG1893          58 AATDAEAL----GPADLVIVTVKAYQLEEALPSLAP   89 (307)
T ss_pred             cccChhhc----CCCCEEEEEeccccHHHHHHHhhh
Confidence            22334443    578999999988877776665543

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.27  E-value=1.8  Score=36.08  Aligned_cols=92  Identities=16%  Similarity=0.227  Sum_probs=52.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      -.||-|+|+|.+|...++.|.+.. .+++.|. +.... .+..+.                ..+ .+..      .....
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs-~~~~~-~l~~l~----------------~~~-~i~~------~~~~~   63 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYG-AHIVVIS-PELTE-NLVKLV----------------EEG-KIRW------KQKEF   63 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CeEEEEc-CCCCH-HHHHHH----------------hCC-CEEE------EecCC
Confidence            468999999999999999998875 5666553 42111 111110                001 1111      00011


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP  126 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~  126 (265)
                      ..+++    .++|+||.||+....-+.+....+.+.  .+-.++
T Consensus        64 ~~~~l----~~adlViaaT~d~elN~~i~~~a~~~~--lvn~~d  101 (202)
T PRK06718         64 EPSDI----VDAFLVIAATNDPRVNEQVKEDLPENA--LFNVIT  101 (202)
T ss_pred             Chhhc----CCceEEEEcCCCHHHHHHHHHHHHhCC--cEEECC
Confidence            22334    578999999998876666655556664  433444

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=93.24  E-value=0.58  Score=41.86  Aligned_cols=33  Identities=21%  Similarity=0.306  Sum_probs=26.3

Q ss_pred             EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ||+|+|+ |.+|..++.+|...+-+.-..+.|..
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIA   34 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            7999999 99999999999877655545566653

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=93.21  E-value=0.2  Score=38.83  Aligned_cols=36  Identities=31%  Similarity=0.371  Sum_probs=30.8

Q ss_pred             EEEEcc-ChhHHHHHHHHHcCC-CeEEEEEeccccChhh
Q 024565            6 IGINGF-GRIGRLVARVILQRD-DVELVAVNDPFITTDY   42 (265)
Q Consensus         6 vgI~G~-G~~G~~l~~~L~~~p-~~el~~v~~~~~~~~~   42 (265)
                      |.|+|+ |-||++.++.+.+|| .|++++++..+ +.+.
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~-n~~~   38 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGS-NIEK   38 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESS-THHH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCC-CHHH
Confidence            689999 999999999999997 59999998854 4433

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.14  E-value=0.12  Score=42.56  Aligned_cols=30  Identities=23%  Similarity=0.542  Sum_probs=23.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |||+|+|.||+|..++-.|+++. ++++++=
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~D   30 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGVD   30 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTT-SEEEEE-
T ss_pred             CEEEEECCCcchHHHHHHHHhCC-CEEEEEe
Confidence            68999999999999999999885 7777763

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.11  E-value=0.1  Score=49.86  Aligned_cols=30  Identities=20%  Similarity=0.326  Sum_probs=24.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      ..||||||+|.||..++..++.+. ++|+..
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG-~~V~l~   34 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAG-HQVLLY   34 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCC-CeEEEE
Confidence            468999999999999999998874 666544

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=93.05  E-value=0.28  Score=43.92  Aligned_cols=33  Identities=15%  Similarity=0.226  Sum_probs=25.8

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      +-.||||+|+|.+|..+++.|.++. ++++...+
T Consensus         2 ~~kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~~   34 (314)
T TIGR00465         2 KGKTVAIIGYGSQGHAQALNLRDSG-LNVIVGLR   34 (314)
T ss_pred             CcCEEEEEeEcHHHHHHHHHHHHCC-CeEEEEEC
Confidence            3478999999999999999999774 56543333

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=93.04  E-value=0.23  Score=43.71  Aligned_cols=31  Identities=32%  Similarity=0.546  Sum_probs=26.4

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |||-|+|+ |++|..+.+.|.++ +.+++++..
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~~r   32 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKER-GYEVIATSR   32 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTT-SEEEEEEST
T ss_pred             CEEEEECCCCHHHHHHHHHHhhC-CCEEEEeCc
Confidence            68999999 99999999999975 478777743

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.93  E-value=0.17  Score=45.86  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD   26 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p   26 (265)
                      ++||+|+|+|.+|..++..|.++.
T Consensus         7 ~mkI~IiGaGa~G~alA~~La~~g   30 (341)
T PRK12439          7 EPKVVVLGGGSWGTTVASICARRG   30 (341)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC
Confidence            579999999999999999999775

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=92.90  E-value=0.16  Score=45.75  Aligned_cols=30  Identities=33%  Similarity=0.628  Sum_probs=25.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .+|||+|+|.||+++++.|... ++++.+..
T Consensus       143 kTvGIiG~G~IG~~va~~l~af-gm~v~~~d  172 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAF-GMKVIGYD  172 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEEEEC
Confidence            5899999999999999999877 47766553

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=92.89  E-value=0.28  Score=44.13  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=25.9

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeE-----EEEEecc
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVE-----LVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~e-----l~~v~~~   36 (265)
                      +.||+|+|+ |.+|..++..|..+.-+.     -+.+.|.
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   41 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL   41 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence            579999999 999999999988654343     3445554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN03139 formate dehydrogenase; Provisional

Probab=92.63  E-value=0.15  Score=47.04  Aligned_cols=31  Identities=32%  Similarity=0.531  Sum_probs=25.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .+|||+|+|+||+.+++.|... ++++.+ +++
T Consensus       200 ktVGIVG~G~IG~~vA~~L~af-G~~V~~-~d~  230 (386)
T PLN03139        200 KTVGTVGAGRIGRLLLQRLKPF-NCNLLY-HDR  230 (386)
T ss_pred             CEEEEEeecHHHHHHHHHHHHC-CCEEEE-ECC
Confidence            5899999999999999999865 588754 454

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=92.58  E-value=0.31  Score=41.46  Aligned_cols=32  Identities=38%  Similarity=0.543  Sum_probs=26.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |++.|+|+|.+|..+++.|.+.. .+++.|-..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d   32 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRD   32 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcC
Confidence            58999999999999999999885 566666543

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.55  E-value=0.26  Score=45.16  Aligned_cols=29  Identities=24%  Similarity=0.495  Sum_probs=25.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+||+|.-++-.++.+ ++.++++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~-G~~ViG~   38 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASA-GFKVIGV   38 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHc-CCceEeE
Confidence            7999999999999999888877 4888777

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.37  E-value=5.7  Score=33.18  Aligned_cols=85  Identities=18%  Similarity=0.207  Sum_probs=50.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe-c
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG-V   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-~   81 (265)
                      -.||.|+|+|.+|..-++.|.+.. .+++.| ++..+. .+..+.                ..+ .+       .... +
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~g-a~VtVv-sp~~~~-~l~~l~----------------~~~-~i-------~~~~~~   61 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAG-AQLRVI-AEELES-ELTLLA----------------EQG-GI-------TWLARC   61 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCC-CEEEEE-cCCCCH-HHHHHH----------------HcC-CE-------EEEeCC
Confidence            358999999999999999999875 565544 443221 111110                011 11       1111 1


Q ss_pred             CCCCCCCcccccccEEEEecCCc-ccHHhHHHHHhCCC
Q 024565           82 RNPEEIPWAETGAEYVVESTGVF-TDKDKAAAHLKGGA  118 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~-~~~~~~~~~~~~G~  118 (265)
                      ...+++    .++|+||-||+.. ........+.+.|+
T Consensus        62 ~~~~dl----~~~~lVi~at~d~~ln~~i~~~a~~~~i   95 (205)
T TIGR01470        62 FDADIL----EGAFLVIAATDDEELNRRVAHAARARGV   95 (205)
T ss_pred             CCHHHh----CCcEEEEECCCCHHHHHHHHHHHHHcCC
Confidence            122333    5789999999986 55556666777886

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>KOG2742 consensus Predicted oxidoreductase [General function prediction only]

Probab=92.15  E-value=0.078  Score=47.34  Aligned_cols=92  Identities=17%  Similarity=0.217  Sum_probs=64.0

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |.+. |||.|.|...+-++-+|.+-+ +++.++-.+.....         ...     +    . .  .     ..+.+.
T Consensus         1 m~Pg-v~v~GTg~~arv~iP~l~e~~-f~v~A~w~Rt~~ea---------~a~-----a----a-~--~-----~v~~~t   52 (367)
T KOG2742|consen    1 MSPG-VGVFGTGIFARVLIPLLKEEG-FEVKAIWGRTKTEA---------KAK-----A----A-E--M-----NVRKYT   52 (367)
T ss_pred             CCCc-eeEeccChhHhhhhhhhhhcc-chHhhhhchhhhHH---------HHh-----h----h-c--c-----chhhcc
Confidence            6666 999999999999988888888 88877766521111         000     0    0 0  0     111221


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       ...+++ |.+.++|+|+.+.|+..+++.+.+++..|. +|++
T Consensus        53 -~~~dei-Ll~~~vdlv~i~lpp~~~~eI~~kal~~Gk-~Vvc   92 (367)
T KOG2742|consen   53 -SRLDEI-LLDQDVDLVCISLPPPLHAEIVVKALGIGK-HVVC   92 (367)
T ss_pred             -ccchhh-hccCCcceeEeccCCccceeeeeccccCCc-eEEe
Confidence             234555 667899999999999999999999999995 5666

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=92.11  E-value=0.45  Score=42.66  Aligned_cols=36  Identities=19%  Similarity=0.292  Sum_probs=29.9

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccC
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFIT   39 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~   39 (265)
                      +++|.|-|+ |+||..+++.|+.+. .+|.+-+....+
T Consensus         6 ~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~~~   42 (327)
T KOG1502|consen    6 GKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDPED   42 (327)
T ss_pred             CcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCcch
Confidence            479999999 999999999999995 677777765434

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.00  E-value=2.6  Score=33.72  Aligned_cols=30  Identities=20%  Similarity=0.111  Sum_probs=25.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      -.||-|+|+|.+|...++.|.+.. .+++.|
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~g-a~V~VI   42 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTG-AFVTVV   42 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence            468999999999999999998764 666655

>PLN00203 glutamyl-tRNA reductase

Probab=91.99  E-value=0.51  Score=45.23  Aligned_cols=34  Identities=15%  Similarity=0.400  Sum_probs=26.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..+|+|+|+|.+|+.+++.|..++ ++-+.|++++
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G-~~~V~V~nRs  299 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKG-CTKMVVVNRS  299 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCC-CCeEEEEeCC
Confidence            468999999999999999999875 5444555553

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.91  E-value=0.82  Score=43.20  Aligned_cols=90  Identities=20%  Similarity=0.216  Sum_probs=52.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      ..||.|+|+|.+|.++++.|.++. .+++.+-...... ..+...+         .      ..|         +.++..
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d~~~~~~~~~~~~~l---------~------~~g---------v~~~~~   70 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELG-ARVTVVDDGDDERHRALAAIL---------E------ALG---------ATVRLG   70 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhhHHHHHHH---------H------HcC---------CEEEEC
Confidence            358999999999999999998774 6755443221111 1111000         0      111         122211


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+.+ .   ..++|+|+.+++..........+.+.|+  .++
T Consensus        71 ~~~~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi--~v~  106 (480)
T PRK01438         71 PGPT-L---PEDTDLVVTSPGWRPDAPLLAAAADAGI--PVW  106 (480)
T ss_pred             CCcc-c---cCCCCEEEECCCcCCCCHHHHHHHHCCC--eec
Confidence            2222 1   1468999999887666667777788887  455

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=91.86  E-value=1  Score=40.02  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=25.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      .|||+|+|+|.+|..+.-.|.+.. .+++.+..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~r   33 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAG-LPVRLILR   33 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCC-CCeEEEEe
Confidence            479999999999999999888763 45555543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=91.85  E-value=0.64  Score=36.35  Aligned_cols=30  Identities=33%  Similarity=0.379  Sum_probs=24.5

Q ss_pred             EEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            6 IGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         6 vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+|+|+|.+|..++..|.+ ...++..+...
T Consensus         1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~   30 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRS   30 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHH-TTCEEEEEESH
T ss_pred             CEEECcCHHHHHHHHHHHH-CCCceEEEEcc
Confidence            7899999999999999987 45676666654

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=91.81  E-value=0.32  Score=44.80  Aligned_cols=27  Identities=15%  Similarity=0.283  Sum_probs=23.2

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeE
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVE   29 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~e   29 (265)
                      ..||+|+|+ |.+|..++..|....-+.
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~   71 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFG   71 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccC
Confidence            579999999 999999999998775443

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=91.69  E-value=0.28  Score=44.86  Aligned_cols=108  Identities=19%  Similarity=0.179  Sum_probs=60.6

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCC-eEEEEEeccccChhhhhhheeecccCCcccccceeeeCC---ceEE--EC--CE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD---KTLL--FG--EK   74 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~-~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~--~~--g~   74 (265)
                      .||+|+|+ |-||++.++.+.++|+ +++++++..+ ..+.+..+.+  .-.+++-    ...+.   +.+.  ..  +.
T Consensus         2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~-n~~~L~~q~~--~f~p~~v----~i~d~~~~~~l~~~l~~~~~   74 (389)
T TIGR00243         2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGK-NVALMVEQIL--EFRPKFV----AIDDEASLKDLKTMLQQQGS   74 (389)
T ss_pred             ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCC-CHHHHHHHHH--HcCCCEE----EEcCHHHHHHHHHHhhcCCC
Confidence            79999999 9999999999999975 9999998764 3333322211  1011110    00000   0000  00  10


Q ss_pred             EEEEEec-CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCC
Q 024565           75 PVTVFGV-RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK  119 (265)
Q Consensus        75 ~~~~~~~-~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~  119 (265)
                      .++++.. ....++ -...++|+|+.+.-......-.-.++++|.+
T Consensus        75 ~~~v~~G~~~l~~l-~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~  119 (389)
T TIGR00243        75 RTEVLVGEEGICEM-AALEDVDQVMNAIVGAAGLLPTLAAIRAGKT  119 (389)
T ss_pred             CcEEEECHHHHHHH-HcCCCCCEEEEhhhcHhhHHHHHHHHHCCCc
Confidence            1223221 111111 0114689999998877777777788889963

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=91.59  E-value=0.8  Score=45.88  Aligned_cols=29  Identities=21%  Similarity=0.357  Sum_probs=24.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .||+|+|+|.||..++..++.+ +++|+.+
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~-G~~V~l~  364 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDK-GLKTVLK  364 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhC-CCcEEEe
Confidence            5899999999999999999887 4766543

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=91.59  E-value=0.43  Score=42.27  Aligned_cols=31  Identities=26%  Similarity=0.403  Sum_probs=23.4

Q ss_pred             EEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            6 IGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         6 vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |+|+|+|.+|..++..+..+.-.+ +.+.|..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~e-V~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGD-VVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcE-EEEEeCC
Confidence            689999999999999888764235 4455654

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=91.54  E-value=1.1  Score=44.66  Aligned_cols=32  Identities=28%  Similarity=0.372  Sum_probs=23.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .||+|+|+|.||..++..++.+-+++|+. .|.
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l-~d~  336 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRI-KDI  336 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEE-EeC
Confidence            58999999999999999887432465543 444

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.28  E-value=0.32  Score=42.81  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=27.0

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+..||+|+|+|.+|..++..+.++. ++++. .+.
T Consensus         1 ~~i~~I~ViGaG~mG~~iA~~la~~G-~~V~l-~d~   34 (291)
T PRK06035          1 MDIKVIGVVGSGVMGQGIAQVFARTG-YDVTI-VDV   34 (291)
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhcC-CeEEE-EeC
Confidence            55568999999999999999998874 56554 444

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=91.20  E-value=0.27  Score=44.26  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=29.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .+++|+|+|..|+.+++.|.....++-+.|.+++
T Consensus       130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~  163 (326)
T TIGR02992       130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARD  163 (326)
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC
Confidence            5899999999999999999854568888888875

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK05442 malate dehydrogenase; Provisional

Probab=91.12  E-value=0.4  Score=43.21  Aligned_cols=26  Identities=27%  Similarity=0.420  Sum_probs=21.9

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCe
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDV   28 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~   28 (265)
                      +.||+|+|+ |.+|..++..|....-+
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~   30 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDML   30 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhc
Confidence            689999999 99999999988765433

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=91.12  E-value=0.34  Score=39.69  Aligned_cols=29  Identities=24%  Similarity=0.448  Sum_probs=23.3

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ||+|+|+|.+|+.++..++.+ ++++..+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d   29 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA-GYEVTLYD   29 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT-TSEEEEE-
T ss_pred             CEEEEcCCHHHHHHHHHHHhC-CCcEEEEE
Confidence            799999999999999999988 57765443

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.04  E-value=0.35  Score=42.50  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=25.5

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |.+.||+|+|+|.+|..++..+.++. .++..+
T Consensus         1 ~~~~kIaViGaG~mG~~iA~~la~~G-~~V~l~   32 (287)
T PRK08293          1 MDIKNVTVAGAGVLGSQIAFQTAFHG-FDVTIY   32 (287)
T ss_pred             CCccEEEEECCCHHHHHHHHHHHhcC-CeEEEE
Confidence            55679999999999999999998763 554433

>PRK08291 ectoine utilization protein EutC; Validated

Probab=91.02  E-value=0.3  Score=43.99  Aligned_cols=34  Identities=18%  Similarity=0.126  Sum_probs=28.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .+++|+|+|..|+.+++.+.....++-+.|.+++
T Consensus       133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~  166 (330)
T PRK08291        133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARD  166 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            5899999999999999999864458888888875

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=91.02  E-value=2.5  Score=39.58  Aligned_cols=31  Identities=19%  Similarity=0.476  Sum_probs=26.6

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .+||-|.|+ |++|+.+++.|.++. .+|+++.
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ld  151 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVID  151 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCC-CEEEEEe
Confidence            479999999 999999999999874 6777764

>cd00704 MDH Malate dehydrogenase

Probab=91.00  E-value=0.5  Score=42.51  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=22.0

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVE   29 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~e   29 (265)
                      .||+|+|+ |.+|..++..|...+-+.
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~   27 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFG   27 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccC
Confidence            48999999 999999999998765443

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.85  E-value=1.1  Score=41.69  Aligned_cols=85  Identities=22%  Similarity=0.304  Sum_probs=51.9

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |...||.|+|.|.+|+.+++.|.+.. .++. ..|......     .   .             .+ .+   +.  ... 
T Consensus         1 ~~~~~i~iiGlG~~G~slA~~l~~~G-~~V~-g~D~~~~~~-----~---~-------------~~-~~---~~--~~~-   50 (418)
T PRK00683          1 MGLQRVVVLGLGVTGKSIARFLAQKG-VYVI-GVDKSLEAL-----Q---S-------------CP-YI---HE--RYL-   50 (418)
T ss_pred             CCCCeEEEEEECHHHHHHHHHHHHCC-CEEE-EEeCCcccc-----c---h-------------hH-HH---hh--hhc-
Confidence            66789999999999999999998775 4543 344321110     0   0             00 00   00  000 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCC
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK  119 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~  119 (265)
                       .+.+.+   ..++|+||.+.|.......+..++++|++
T Consensus        51 -~~~~~~---~~~~dlvV~s~gi~~~~~~l~~A~~~g~~   85 (418)
T PRK00683         51 -ENAEEF---PEQVDLVVRSPGIKKEHPWVQAAIASHIP   85 (418)
T ss_pred             -CCcHHH---hcCCCEEEECCCCCCCcHHHHHHHHCCCc
Confidence             112222   14579999888766667788899999983

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=90.81  E-value=0.35  Score=45.81  Aligned_cols=32  Identities=38%  Similarity=0.458  Sum_probs=27.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~   34 (265)
                      ||||+|+|+||+|..++-.|+++. +++++++-
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD   33 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVD   33 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence            379999999999999999999773 68888774

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=90.75  E-value=0.84  Score=42.33  Aligned_cols=92  Identities=22%  Similarity=0.348  Sum_probs=55.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      .||-|+|+|-||..+++.|.++. +.-+.|+.+... ...++.-+                        ++..+..   .
T Consensus       179 ~~vlvIGAGem~~lva~~L~~~g-~~~i~IaNRT~erA~~La~~~------------------------~~~~~~l---~  230 (414)
T COG0373         179 KKVLVIGAGEMGELVAKHLAEKG-VKKITIANRTLERAEELAKKL------------------------GAEAVAL---E  230 (414)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHh------------------------CCeeecH---H
Confidence            57999999999999999999996 566666666432 23333111                        0111111   1


Q ss_pred             CCCCCCcccccccEEEEecCCc---ccHHhHHHHHhCCCCeEE--EcCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVF---TDKDKAAAHLKGGAKKVI--ISAP  126 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~---~~~~~~~~~~~~G~~~vv--is~~  126 (265)
                      +..+.   ..++|+||.||+..   ...+.++.+++...+.++  |+-|
T Consensus       231 el~~~---l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavP  276 (414)
T COG0373         231 ELLEA---LAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVP  276 (414)
T ss_pred             HHHHh---hhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence            11111   15799999998753   467777777766543133  4555

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.58  E-value=1.5  Score=43.74  Aligned_cols=29  Identities=17%  Similarity=0.225  Sum_probs=23.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .||+|+|+|.||..++..++.+ +++|+-+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~  342 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASK-GVPVIMK  342 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhC-CCeEEEE
Confidence            5899999999999999998887 4665433

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=90.52  E-value=0.51  Score=39.32  Aligned_cols=33  Identities=24%  Similarity=0.511  Sum_probs=27.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      -++|+|+|+|.+|+.+++.|.+.. .+++ ++|..
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~G-~~Vv-v~D~~   60 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEEG-AKLI-VADIN   60 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEE-EEcCC
Confidence            478999999999999999999874 7877 66653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=90.41  E-value=0.68  Score=32.19  Aligned_cols=30  Identities=20%  Similarity=0.280  Sum_probs=24.9

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      ||.|+|+|++|.+++..|.+.. .+++-+..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~~   30 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELG-KEVTLIER   30 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT-SEEEEEES
T ss_pred             CEEEECcCHHHHHHHHHHHHhC-cEEEEEec
Confidence            7899999999999999998864 67665553

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=90.24  E-value=0.46  Score=41.88  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=26.7

Q ss_pred             CC-ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         1 m~-~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+ +.||||+|+|.||..+++.+.++. .++.. .++
T Consensus         1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G-~~V~~-~d~   35 (295)
T PLN02545          1 MAEIKKVGVVGAGQMGSGIAQLAAAAG-MDVWL-LDS   35 (295)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHHhcC-CeEEE-EeC
Confidence            54 368999999999999999999874 66654 444

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.15  E-value=1.2  Score=44.45  Aligned_cols=29  Identities=24%  Similarity=0.328  Sum_probs=23.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVA   32 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~   32 (265)
                      .||+|+|+|.||..++..++..-+++|+.
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l  338 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRI  338 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEE
Confidence            58999999999999999888343466554

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=90.13  E-value=0.6  Score=46.64  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=24.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCC-CeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~   36 (265)
                      .||+|+|+|.+|..+++.|.+.. ..++. +.++
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~-~~d~   36 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVV-AVDR   36 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEE-EEEC
Confidence            68999999999999999998764 23443 4454

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=90.12  E-value=0.72  Score=42.88  Aligned_cols=31  Identities=13%  Similarity=0.349  Sum_probs=24.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .+|+|+|+|.+|+.+++.+.... ++++. ++.
T Consensus       203 ktVvViG~G~IG~~va~~ak~~G-a~ViV-~d~  233 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIV-TEV  233 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EEC
Confidence            58999999999999999988774 56544 444

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=90.12  E-value=3.3  Score=30.38  Aligned_cols=33  Identities=15%  Similarity=0.290  Sum_probs=27.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ..+|-|+|.|.+|..=++.|.+.. .+++.+...
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAG-AKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCc
Confidence            478999999999999999999885 777766644

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.03  E-value=1.6  Score=40.83  Aligned_cols=89  Identities=20%  Similarity=0.227  Sum_probs=52.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ..+|.|+|+|.+|..+++.|++.. .++.. ++..... .+...+  +    .+.      ..|         +.++...
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G-~~V~~-~d~~~~~-~~~~~~--~----~l~------~~~---------~~~~~~~   60 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLG-AKVIL-TDEKEED-QLKEAL--E----ELG------ELG---------IELVLGE   60 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEE-EeCCchH-HHHHHH--H----HHH------hcC---------CEEEeCC
Confidence            478999999889999999999885 56554 4443111 110000  0    000      001         1122212


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      .+++.   ..++|+||.+++.....+....+.+.|+
T Consensus        61 ~~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i   93 (450)
T PRK14106         61 YPEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI   93 (450)
T ss_pred             cchhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence            22222   1568999999987777777778888887

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=90.03  E-value=0.56  Score=42.59  Aligned_cols=32  Identities=22%  Similarity=0.221  Sum_probs=23.5

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +|.|+|+|.+|...+.++....--+++ +.|.+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Vi-v~d~~  202 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVI-VVDRS  202 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEE-EeCCC
Confidence            699999999999987777766544444 44553

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.93  E-value=1.4  Score=38.93  Aligned_cols=26  Identities=15%  Similarity=0.364  Sum_probs=21.8

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVEL   30 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el   30 (265)
                      .+|+|+|. |.+|+-++.+|.+.. ..+
T Consensus       159 k~v~vIG~S~ivG~Pla~lL~~~g-atV  185 (284)
T PRK14179        159 KHAVVIGRSNIVGKPMAQLLLDKN-ATV  185 (284)
T ss_pred             CEEEEECCCCcCcHHHHHHHHHCC-CEE
Confidence            68999999 999999999998763 444

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=89.90  E-value=0.88  Score=42.46  Aligned_cols=32  Identities=16%  Similarity=0.352  Sum_probs=25.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      -.+|+|+|+|.+|+.+++.|.... ++++ +++.
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~G-a~Vi-V~d~  243 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLG-ARVI-VTEV  243 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CEEE-EEcC
Confidence            358999999999999999998774 6644 4443

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=89.81  E-value=1.9  Score=40.53  Aligned_cols=89  Identities=19%  Similarity=0.216  Sum_probs=53.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      .+||.|+|+|..|+.+++.|.++. .++ .++|.........      . .+..       ..+         +.+....
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G-~~v-~v~D~~~~~~~~~------~-~~~~-------~~~---------i~~~~g~   61 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLG-AEV-TVSDDRPAPEGLA------A-QPLL-------LEG---------IEVELGS   61 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCC-CeE-EEEcCCCCccchh------h-hhhh-------ccC---------ceeecCc
Confidence            579999999999999999999885 544 4444321211000      0 0000       011         1221111


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK  119 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~  119 (265)
                      .+. .+|  ..+|+|+.+-+-..+-.++.++.++|++
T Consensus        62 ~~~-~~~--~~~d~vV~SPGi~~~~p~v~~A~~~gi~   95 (448)
T COG0771          62 HDD-EDL--AEFDLVVKSPGIPPTHPLVEAAKAAGIE   95 (448)
T ss_pred             cch-hcc--ccCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence            222 334  5689999987766666788999999983

>PRK06487 glycerate dehydrogenase; Provisional

Probab=89.75  E-value=0.47  Score=42.50  Aligned_cols=29  Identities=24%  Similarity=0.406  Sum_probs=24.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.||+++++.+... ++++.+.
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~f-gm~V~~~  177 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAF-GMRVLIG  177 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhC-CCEEEEE
Confidence            5899999999999999999866 4777654

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=89.74  E-value=1.3  Score=39.16  Aligned_cols=31  Identities=32%  Similarity=0.314  Sum_probs=24.2

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +|.|+|+|.+|...++++... +++.+.+.+.
T Consensus       147 ~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~  177 (308)
T TIGR01202       147 PDLIVGHGTLGRLLARLTKAA-GGSPPAVWET  177 (308)
T ss_pred             cEEEECCCHHHHHHHHHHHHc-CCceEEEeCC
Confidence            689999999999999877766 4765555554

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=89.67  E-value=1.5  Score=37.95  Aligned_cols=32  Identities=19%  Similarity=0.146  Sum_probs=24.3

Q ss_pred             EEEEcc-ChhHHHHHHHHHcCC--CeEEEEEeccc
Q 024565            6 IGINGF-GRIGRLVARVILQRD--DVELVAVNDPF   37 (265)
Q Consensus         6 vgI~G~-G~~G~~l~~~L~~~p--~~el~~v~~~~   37 (265)
                      |+|+|+ |.+|..++..|...+  ...-+.+.|..
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~   35 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDID   35 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCC
Confidence            689999 999999999998776  33344555653

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.66  E-value=0.81  Score=40.94  Aligned_cols=31  Identities=23%  Similarity=0.374  Sum_probs=24.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||+|+|+|.+|..+...|.+.. .++. +.++
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g-~~V~-l~~r   31 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKK-ISVN-LWGR   31 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CeEE-EEec
Confidence            37999999999999999998763 4444 4444

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=89.63  E-value=0.54  Score=42.25  Aligned_cols=31  Identities=32%  Similarity=0.478  Sum_probs=27.0

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      +||-|.|+ |++|..+++.|.+..+.+|.++.
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~   33 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMD   33 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence            68999999 99999999999876557887775

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=89.55  E-value=0.46  Score=38.24  Aligned_cols=82  Identities=20%  Similarity=0.122  Sum_probs=44.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ..+|+|+|||.-|...+..|.++. ++++.-..........                  .+++|         ..++   
T Consensus         4 ~k~IAViGyGsQG~a~AlNLrDSG-~~V~Vglr~~s~s~~~------------------A~~~G---------f~v~---   52 (165)
T PF07991_consen    4 GKTIAVIGYGSQGHAHALNLRDSG-VNVIVGLREGSASWEK------------------AKADG---------FEVM---   52 (165)
T ss_dssp             TSEEEEES-SHHHHHHHHHHHHCC--EEEEEE-TTCHHHHH------------------HHHTT----------ECC---
T ss_pred             CCEEEEECCChHHHHHHHHHHhCC-CCEEEEecCCCcCHHH------------------HHHCC---------Ceec---
Confidence            478999999999999999999884 7765443322111111                  11333         1121   


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHh----HHHHHhCCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDK----AAAHLKGGA  118 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~----~~~~~~~G~  118 (265)
                      +.++.   .+..|+|+..+|.....+.    +...++.|.
T Consensus        53 ~~~eA---v~~aDvV~~L~PD~~q~~vy~~~I~p~l~~G~   89 (165)
T PF07991_consen   53 SVAEA---VKKADVVMLLLPDEVQPEVYEEEIAPNLKPGA   89 (165)
T ss_dssp             EHHHH---HHC-SEEEE-S-HHHHHHHHHHHHHHHS-TT-
T ss_pred             cHHHH---HhhCCEEEEeCChHHHHHHHHHHHHhhCCCCC
Confidence            11111   2568999999998766554    455677886

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=89.54  E-value=0.84  Score=43.76  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=32.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +.++-|+|+|..|..++|.+..+|+...+++.|+.
T Consensus       116 ~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd  150 (588)
T COG1086         116 RIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDD  150 (588)
T ss_pred             CCceEEEcCchHHHHHHHHHHhCCCcceEEEECCC
Confidence            47899999999999999999999999999999873

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=89.50  E-value=0.41  Score=45.54  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=27.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +.+||+||.|.||..+++.|.++. ++|. |.+++
T Consensus         6 ~~~IG~IGLG~MG~~mA~nL~~~G-~~V~-V~NRt   38 (493)
T PLN02350          6 LSRIGLAGLAVMGQNLALNIAEKG-FPIS-VYNRT   38 (493)
T ss_pred             CCCEEEEeeHHHHHHHHHHHHhCC-CeEE-EECCC
Confidence            578999999999999999999885 6654 55553

>PRK06932 glycerate dehydrogenase; Provisional

Probab=89.50  E-value=0.51  Score=42.22  Aligned_cols=29  Identities=21%  Similarity=0.376  Sum_probs=24.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.||+++++.+... ++++.+.
T Consensus       148 ktvgIiG~G~IG~~va~~l~~f-g~~V~~~  176 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQAL-GMKVLYA  176 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcC-CCEEEEE
Confidence            6899999999999999998766 4777654

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=89.50  E-value=1.2  Score=40.13  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=21.2

Q ss_pred             CccEEEEEccChhHHHHHHHHHcC
Q 024565            2 GKVKIGINGFGRIGRLVARVILQR   25 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~   25 (265)
                      .++||+|+|.|..|..+++.+.+.
T Consensus        20 ~~~kV~ivGsGnWGsaiaki~~~n   43 (372)
T KOG2711|consen   20 DPLKVCIVGSGNWGSAIAKIVGEN   43 (372)
T ss_pred             CceEEEEEccChHHHHHHHHHhhh
Confidence            468999999999999999998753

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.49  E-value=0.57  Score=41.25  Aligned_cols=33  Identities=27%  Similarity=0.436  Sum_probs=26.0

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +..||+|+|+|.+|..++..|..+. .++.. .+.
T Consensus         3 ~~~kI~vIGaG~mG~~iA~~la~~G-~~V~l-~d~   35 (292)
T PRK07530          3 AIKKVGVIGAGQMGNGIAHVCALAG-YDVLL-NDV   35 (292)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CeEEE-EeC
Confidence            3468999999999999999998774 56553 444

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.48  E-value=0.57  Score=41.59  Aligned_cols=32  Identities=22%  Similarity=0.464  Sum_probs=25.8

Q ss_pred             CCc-cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            1 MGK-VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         1 m~~-i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |++ .||+|+|+|.+|..++..|.+.. .++..+
T Consensus         1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g-~~V~~~   33 (311)
T PRK06130          1 MNPIQNLAIIGAGTMGSGIAALFARKG-LQVVLI   33 (311)
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhCC-CeEEEE
Confidence            554 58999999999999999998764 666554

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=89.47  E-value=0.51  Score=42.19  Aligned_cols=29  Identities=34%  Similarity=0.492  Sum_probs=24.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.||+++++.+... ++++.+.
T Consensus       146 ktvGIiG~G~IG~~vA~~~~~f-gm~V~~~  174 (311)
T PRK08410        146 KKWGIIGLGTIGKRVAKIAQAF-GAKVVYY  174 (311)
T ss_pred             CEEEEECCCHHHHHHHHHHhhc-CCEEEEE
Confidence            6899999999999999998766 4776654

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=89.41  E-value=0.98  Score=38.94  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=20.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC
Q 024565            3 KVKIGINGFGRIGRLVARVILQR   25 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~   25 (265)
                      ..||.|+|+|-+|.+++..|++.
T Consensus        11 ~~~V~vvG~GGlGs~v~~~Lar~   33 (244)
T TIGR03736        11 PVSVVLVGAGGTGSQVIAGLARL   33 (244)
T ss_pred             CCeEEEEcCChHHHHHHHHHHHc
Confidence            57999999999999999999864

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.31  E-value=0.49  Score=44.39  Aligned_cols=42  Identities=19%  Similarity=0.196  Sum_probs=32.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEE-EEEeccccC-hhhhh
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVEL-VAVNDPFIT-TDYMT   44 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el-~~v~~~~~~-~~~~~   44 (265)
                      |++|+|||.|..|-.++..|.++|..+- +.|..+..+ +..++
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia   44 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA   44 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence            4899999999999999999999976654 777766433 34444

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=89.29  E-value=1.2  Score=40.39  Aligned_cols=21  Identities=19%  Similarity=0.580  Sum_probs=19.3

Q ss_pred             EEEEEccChhHHHHHHHHHcC
Q 024565            5 KIGINGFGRIGRLVARVILQR   25 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~   25 (265)
                      ||+|+|+|..|..++..|.+.
T Consensus         1 kI~VIGaG~wGtALA~~la~n   21 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAEN   21 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHc
Confidence            699999999999999999874

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=89.28  E-value=0.55  Score=38.24  Aligned_cols=31  Identities=29%  Similarity=0.458  Sum_probs=24.7

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ||.|+|+|-+|.+++..|.... +.-+.+.|.
T Consensus         1 ~VlViG~GglGs~ia~~La~~G-vg~i~lvD~   31 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSG-VGNLKLVDF   31 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CCeEEEEeC
Confidence            6899999999999999998774 544455554

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=89.06  E-value=2.2  Score=37.33  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=21.1

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCC
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDD   27 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~   27 (265)
                      -.|||+|+ |-+|..++|.|..|-+
T Consensus       168 atvaivGa~G~Ia~~Iar~la~~~~  192 (351)
T COG5322         168 ATVAIVGATGDIASAIARWLAPKVG  192 (351)
T ss_pred             CeEEEecCCchHHHHHHHHhccccC
Confidence            46999999 9999999999997743

>PRK07236 hypothetical protein; Provisional

Probab=89.05  E-value=0.56  Score=42.89  Aligned_cols=32  Identities=13%  Similarity=0.055  Sum_probs=26.6

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |++++|.|||+|..|..++..|.++ +++++-+
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~   35 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVF   35 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEE
Confidence            6778999999999999999999987 3665433

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=89.02  E-value=0.41  Score=44.59  Aligned_cols=32  Identities=28%  Similarity=0.472  Sum_probs=25.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .+|+|+|+|.+|..+++.|..+. +.-+.+.++
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~G-~~~V~v~~r  212 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRKG-VGKILIANR  212 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHCC-CCEEEEEeC
Confidence            58999999999999999998874 443445555

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=88.95  E-value=1.7  Score=35.25  Aligned_cols=27  Identities=22%  Similarity=0.457  Sum_probs=21.3

Q ss_pred             ccEEEEEccCh-hHHHHHHHHHcCCCeEE
Q 024565            3 KVKIGINGFGR-IGRLVARVILQRDDVEL   30 (265)
Q Consensus         3 ~i~vgI~G~G~-~G~~l~~~L~~~p~~el   30 (265)
                      -.||.|+|+|. +|..+++.|.++. +++
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g-~~V   71 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRN-ATV   71 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCC-CEE
Confidence            36899999986 5888999998874 453

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK12320 hypothetical protein; Provisional

Probab=88.92  E-value=3.4  Score=41.08  Aligned_cols=31  Identities=19%  Similarity=0.403  Sum_probs=25.6

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |||-|.|+ |++|+.+++.|.+.. .++.++..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr   32 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAG-HTVSGIAQ   32 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeC
Confidence            38999999 999999999998764 57766653

>PRK14031 glutamate dehydrogenase; Provisional

Probab=88.82  E-value=1.8  Score=40.56  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=29.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      -.||+|-|+|.+|...++.|.+. +..|++|+|.
T Consensus       228 g~rVaVQGfGNVG~~aA~~L~e~-GAkVVaVSD~  260 (444)
T PRK14031        228 GKVCLVSGSGNVAQYTAEKVLEL-GGKVVTMSDS  260 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence            36999999999999999999876 5999999984

>TIGR00936 ahcY adenosylhomocysteinase

Probab=88.76  E-value=1.3  Score=41.14  Aligned_cols=30  Identities=13%  Similarity=0.247  Sum_probs=24.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      -.+|+|+|+|.+|+.+++.+... +++++.+
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~  224 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGM-GARVIVT  224 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhC-cCEEEEE
Confidence            35899999999999999998866 4775543

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=88.69  E-value=0.59  Score=42.01  Aligned_cols=28  Identities=29%  Similarity=0.469  Sum_probs=23.5

Q ss_pred             cEEEEEccChhHHHHHHHHH-cCCCeEEEE
Q 024565            4 VKIGINGFGRIGRLVARVIL-QRDDVELVA   32 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~-~~p~~el~~   32 (265)
                      .+|||+|+|.||+++++.+. .. ++++.+
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~~  174 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGF-NMPILY  174 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcC-CCEEEE
Confidence            68999999999999999987 55 477653

>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]

Probab=88.63  E-value=0.7  Score=41.88  Aligned_cols=39  Identities=31%  Similarity=0.361  Sum_probs=33.3

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCC-eEEEEEeccccChhh
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTDY   42 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~-~el~~v~~~~~~~~~   42 (265)
                      |.|+.|+|. |-||.+.+..+.++|+ |++++++... ..+.
T Consensus         1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~-n~~~   41 (385)
T COG0743           1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGK-NVEL   41 (385)
T ss_pred             CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCC-cHHH
Confidence            479999999 9999999999999986 8999998764 4443

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.63  E-value=1.6  Score=38.74  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=23.4

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|+|+|. |.+|+.++++|.++. ..++..
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~g-atVtv~  189 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQAH-CSVTVV  189 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCC-CEEEEE
Confidence            68999999 699999999998763 555444

>PRK08219 short chain dehydrogenase; Provisional

Probab=88.62  E-value=0.69  Score=38.36  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=27.3

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |+|+++-|.|+ |.+|+.+++.|.++  .++..+..
T Consensus         1 ~~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r   34 (227)
T PRK08219          1 MERPTALITGASRGIGAAIARELAPT--HTLLLGGR   34 (227)
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeC
Confidence            65678999999 99999999999987  66666653

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=88.54  E-value=1.3  Score=39.36  Aligned_cols=30  Identities=23%  Similarity=0.286  Sum_probs=24.4

Q ss_pred             EEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            8 INGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         8 I~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |+|+|.+|..++..|..++-+.-+.+.|..
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~   30 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDIN   30 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            689999999999999988766656666653

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PLN02928 oxidoreductase family protein

Probab=88.46  E-value=0.66  Score=42.16  Aligned_cols=29  Identities=31%  Similarity=0.408  Sum_probs=25.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.||+++++.|... ++++.+.
T Consensus       160 ktvGIiG~G~IG~~vA~~l~af-G~~V~~~  188 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPF-GVKLLAT  188 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhC-CCEEEEE
Confidence            6899999999999999999877 4787765

>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=88.36  E-value=0.64  Score=40.09  Aligned_cols=104  Identities=17%  Similarity=0.284  Sum_probs=58.8

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCC--------CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEEC
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG   72 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p--------~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   72 (265)
                      |..++|+++|+|.+|++++..+....        .++++++++........-++-  ......|. ..+..+.+      
T Consensus         1 ~k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p--~nl~sewk-~~L~~st~------   71 (364)
T KOG0455|consen    1 MKKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLP--ENLNSEWK-SELIKSTG------   71 (364)
T ss_pred             CccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccCh--hhhchHHH-HHHHHhcC------
Confidence            67789999999999999998886422        378899988643321111100  01011121 11011111      


Q ss_pred             CEEEEEEecCCC-CCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           73 EKPVTVFGVRNP-EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        73 g~~~~~~~~~~~-~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                       ..++.   .+. +.+ ......=+++|||......+...++++.|+
T Consensus        72 -~alsL---daLia~L-~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi  113 (364)
T KOG0455|consen   72 -SALSL---DALIAKL-LGSPTPLILVDNTASMEIAEIYMKFVDLGI  113 (364)
T ss_pred             -CcccH---HHHHHHH-cCCCCceEEEecccHHHHHHHHHHHHhcCc
Confidence             11110   000 111 111234588999999988899999999998

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=88.33  E-value=0.69  Score=41.14  Aligned_cols=32  Identities=31%  Similarity=0.285  Sum_probs=25.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||+|+|+|.+|..++..|.++. .+|+.. ++
T Consensus         2 ~~~V~VIG~G~mG~~iA~~la~~G-~~V~v~-d~   33 (308)
T PRK06129          2 MGSVAIIGAGLIGRAWAIVFARAG-HEVRLW-DA   33 (308)
T ss_pred             CcEEEEECccHHHHHHHHHHHHCC-CeeEEE-eC
Confidence            368999999999999999999884 565544 44

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=88.23  E-value=0.59  Score=39.92  Aligned_cols=38  Identities=26%  Similarity=0.341  Sum_probs=30.5

Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +.+++ .. .++|+|++|+|+..+.+++.+++++|+. +++
T Consensus        29 d~~eL-l~-~~vDaVviatp~~~H~e~a~~aL~aGkh-Vl~   66 (229)
T TIGR03855        29 DFDEF-LP-EDVDIVVEAASQEAVKEYAEKILKNGKD-LLI   66 (229)
T ss_pred             CHHHH-hc-CCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence            45554 22 4699999999999999999999999964 544

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=88.18  E-value=0.8  Score=41.31  Aligned_cols=29  Identities=28%  Similarity=0.430  Sum_probs=24.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      ++|||+|+|.+|+.+++.|... ++++.+.
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~-G~~V~~~  175 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGF-GATITAY  175 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEE
Confidence            5899999999999999999876 4776654

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=88.17  E-value=0.6  Score=43.08  Aligned_cols=29  Identities=38%  Similarity=0.529  Sum_probs=23.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |||+|+|+||+|..++..++.  +.+|+++-
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~--G~~VigvD   29 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ--NHEVVALD   29 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCcEEEEE
Confidence            389999999999999977764  47766664

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=88.16  E-value=0.54  Score=39.58  Aligned_cols=33  Identities=30%  Similarity=0.446  Sum_probs=26.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ..||.|+|+|-+|.+++..|.... +.-..+.|.
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~G-vg~i~lvD~   60 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSG-VGNLKLVDF   60 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcC-CCeEEEEeC
Confidence            468999999999999999999774 554455554

>PRK06436 glycerate dehydrogenase; Provisional

Probab=87.93  E-value=0.76  Score=40.93  Aligned_cols=31  Identities=32%  Similarity=0.487  Sum_probs=25.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      -.+|||+|+|.||+++++.|... ++++.+..
T Consensus       122 gktvgIiG~G~IG~~vA~~l~af-G~~V~~~~  152 (303)
T PRK06436        122 NKSLGILGYGGIGRRVALLAKAF-GMNIYAYT  152 (303)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-CCEEEEEC
Confidence            36899999999999999988755 47776553

>PRK13243 glyoxylate reductase; Reviewed

Probab=87.73  E-value=0.77  Score=41.43  Aligned_cols=31  Identities=39%  Similarity=0.539  Sum_probs=25.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .+|||+|+|.||+.+++.|... ++++.+ +++
T Consensus       151 ktvgIiG~G~IG~~vA~~l~~~-G~~V~~-~d~  181 (333)
T PRK13243        151 KTIGIIGFGRIGQAVARRAKGF-GMRILY-YSR  181 (333)
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCEEEE-ECC
Confidence            6899999999999999999876 477654 444

>PRK14030 glutamate dehydrogenase; Provisional

Probab=87.67  E-value=3.4  Score=38.79  Aligned_cols=105  Identities=14%  Similarity=0.201  Sum_probs=59.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh--------hhhhhheeecccCCcccccceeeeCCceEEECCE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT--------DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK   74 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~   74 (265)
                      -.||+|=|+|.+|..+++.|.+. +..|++|.|.....        ..+.+++++-...+..     ....-  -.+.| 
T Consensus       228 g~~vaIQGfGnVG~~aA~~L~e~-GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~-----~~~~~--~~~~g-  298 (445)
T PRK14030        228 GKTVAISGFGNVAWGAATKATEL-GAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDI-----VAPYA--EKFPG-  298 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCcc-----HHHHH--hcCCC-
Confidence            46999999999999999999876 69999998764221        1111122111100000     00000  00111 


Q ss_pred             EEEEEecCCCCCCCcccccccEEEEec-CCcccHHhHHHHHhCCCCeEEE
Q 024565           75 PVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~DvV~~at-~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       ...   .+.+++ |. .+||+.+=|. +...+.+.++.+.+.+|| +|+
T Consensus       299 -a~~---i~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak-~V~  341 (445)
T PRK14030        299 -STF---FAGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVL-CVA  341 (445)
T ss_pred             -CEE---cCCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCe-EEE
Confidence             111   134455 64 5799887764 456688888888888885 444

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.60  E-value=2.9  Score=39.57  Aligned_cols=31  Identities=23%  Similarity=0.306  Sum_probs=25.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      ..||+|+|+|..|+..+++|.++. .++ .+.|
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g-~~v-~~~d   38 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHL-PAQ-ALTL   38 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcC-CEE-EEEc
Confidence            468999999999999999999874 554 3344

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=87.58  E-value=0.64  Score=41.36  Aligned_cols=88  Identities=13%  Similarity=-0.030  Sum_probs=53.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      .++||+|+|..|+..++++..-..++=+.|.++..+ ...++..+              ....|       .++.+.  .
T Consensus       118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~--------------~~~~~-------~~v~~~--~  174 (301)
T PRK06407        118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERF--------------SKEFG-------VDIRPV--D  174 (301)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH--------------HHhcC-------CcEEEe--C
Confidence            579999999999999999998766888888887532 12221110              00001       112222  3


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      ++++.   ..++|+|+-||+... .-.-...++.|.
T Consensus       175 ~~~ea---v~~aDIV~taT~s~~-P~~~~~~l~pg~  206 (301)
T PRK06407        175 NAEAA---LRDADTITSITNSDT-PIFNRKYLGDEY  206 (301)
T ss_pred             CHHHH---HhcCCEEEEecCCCC-cEecHHHcCCCc
Confidence            44443   267999999999753 112234567786

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=87.49  E-value=0.86  Score=41.08  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=28.6

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |+++||-|.|+ |++|..+++.|.++. .+|+++..
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~   47 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDN   47 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence            45689999999 999999999999884 67777753

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=87.08  E-value=1.3  Score=38.45  Aligned_cols=34  Identities=21%  Similarity=0.427  Sum_probs=30.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      -.||+|-|+|.+|+.+++.|.+. +..+++|+|..
T Consensus        38 g~~vaIqGfGnVG~~~a~~L~e~-GakvvaVsD~~   71 (254)
T cd05313          38 GKRVAISGSGNVAQYAAEKLLEL-GAKVVTLSDSK   71 (254)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCC
Confidence            37999999999999999999877 59999999853

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=87.06  E-value=0.89  Score=41.79  Aligned_cols=30  Identities=20%  Similarity=0.403  Sum_probs=25.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      -.+|||+|+|.||+.+++.|... ++++.+.
T Consensus       116 gktvGIIG~G~IG~~vA~~l~a~-G~~V~~~  145 (378)
T PRK15438        116 DRTVGIVGVGNVGRRLQARLEAL-GIKTLLC  145 (378)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-CCEEEEE
Confidence            36899999999999999999877 4777654

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=87.05  E-value=1.1  Score=41.59  Aligned_cols=36  Identities=33%  Similarity=0.298  Sum_probs=31.0

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCC-CeEEEEEecc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRD-DVELVAVNDP   36 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~   36 (265)
                      |++.||-|+|+|+.|..+++.|.+++ +++++-|...
T Consensus         1 ~~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~   37 (405)
T COG1252           1 MMKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRR   37 (405)
T ss_pred             CCCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCC
Confidence            67899999999999999999999885 7877777654

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=87.02  E-value=0.75  Score=42.93  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=25.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .+|+|+|+|.+|+.+++.|.... ++-+.+.+++
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~r~  215 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVANRT  215 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CCeEEEEeCC
Confidence            68999999999999999998764 5444555553

>PLN02858 fructose-bisphosphate aldolase

Probab=86.96  E-value=0.99  Score=48.33  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +.|||++|.|+||..+++.|.... +++. +.++
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G-~~V~-v~dr  355 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSN-FSVC-GYDV  355 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCC-CEEE-EEeC
Confidence            478999999999999999998774 6654 4444

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=86.88  E-value=0.89  Score=43.04  Aligned_cols=30  Identities=20%  Similarity=0.348  Sum_probs=24.6

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +|||+|.|.||..+++.|.++. ++|. +.++
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G-~~V~-v~dr   30 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHG-FTVS-VYNR   30 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcC-CeEE-EEeC
Confidence            4899999999999999999885 5654 4444

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>TIGR00518 alaDH alanine dehydrogenase

Probab=86.68  E-value=1.9  Score=39.56  Aligned_cols=31  Identities=19%  Similarity=0.141  Sum_probs=25.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .||.|+|+|.+|+..++.+.... +++.. .++
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v-~d~  198 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLG-ATVTI-LDI  198 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCC-CeEEE-EEC
Confidence            57999999999999999999874 66444 444

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=86.51  E-value=0.95  Score=40.73  Aligned_cols=29  Identities=34%  Similarity=0.552  Sum_probs=23.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .++||+|.|+||+.+++.+..- ++++.+-
T Consensus       147 ktvGIiG~GrIG~avA~r~~~F-gm~v~y~  175 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKGF-GMKVLYY  175 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhcC-CCEEEEE
Confidence            6899999999999999998844 3665443

>PLN02427 UDP-apiose/xylose synthase

Probab=86.47  E-value=1.1  Score=40.85  Aligned_cols=32  Identities=19%  Similarity=0.363  Sum_probs=27.5

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ++||-|.|+ |++|+.+++.|.++.+.+++++.
T Consensus        14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~   46 (386)
T PLN02427         14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALD   46 (386)
T ss_pred             CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence            478999999 99999999999987556777775

>PRK06199 ornithine cyclodeaminase; Validated

Probab=86.47  E-value=1.6  Score=40.12  Aligned_cols=35  Identities=11%  Similarity=0.282  Sum_probs=30.5

Q ss_pred             cEEEEEccChhHHHHHHHHHc-CCCeEEEEEecccc
Q 024565            4 VKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFI   38 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~-~p~~el~~v~~~~~   38 (265)
                      .+++|+|+|..++..++++.. +|+++-+.|.++..
T Consensus       156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~  191 (379)
T PRK06199        156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQ  191 (379)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCH
Confidence            579999999999999999987 57798889988853

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=86.23  E-value=0.94  Score=40.06  Aligned_cols=37  Identities=27%  Similarity=0.358  Sum_probs=28.6

Q ss_pred             CCccEEEEEccChhHHHHHHHHHc------CCCeEEEEEeccc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQ------RDDVELVAVNDPF   37 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~------~p~~el~~v~~~~   37 (265)
                      |+++||+|+|+|.+|..-+-.+.+      -|.+++..+.|++
T Consensus         1 ~~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf   43 (342)
T KOG3923|consen    1 NKTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF   43 (342)
T ss_pred             CCCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence            568999999999999888755554      3667777777764

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=86.17  E-value=2.9  Score=37.45  Aligned_cols=29  Identities=21%  Similarity=0.417  Sum_probs=22.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeE-EEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~e-l~~v   33 (265)
                      -+|.|+|+|.+|...+.++... +.+ ++++
T Consensus       171 ~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~  200 (343)
T PRK09880        171 KRVFVSGVGPIGCLIVAAVKTL-GAAEIVCA  200 (343)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCcEEEEE
Confidence            3789999999999999887766 354 4443

>PLN02858 fructose-bisphosphate aldolase

Probab=85.97  E-value=1  Score=48.22  Aligned_cols=33  Identities=12%  Similarity=0.163  Sum_probs=26.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..|||+||+|.||..+++.|.++. +++. +.+++
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G-~~v~-v~dr~   36 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSG-FKVQ-AFEIS   36 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCC-CeEE-EEcCC
Confidence            368999999999999999999875 6654 55553

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=85.93  E-value=1.1  Score=40.82  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=28.1

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcC--CCeEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQR--DDVELVAVN   34 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~   34 (265)
                      |++++|.|||+|..|..++..|.++  .+++++-+-
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E   36 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIE   36 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEe
Confidence            8889999999999999999999876  257655443

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=85.74  E-value=1.1  Score=41.57  Aligned_cols=29  Identities=21%  Similarity=0.390  Sum_probs=24.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.||+++++.+... ++++.+.
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~f-Gm~V~~~  180 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESL-GMRVYFY  180 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEE
Confidence            5899999999999999999876 4777654

>PLN02477 glutamate dehydrogenase

Probab=85.69  E-value=1.5  Score=40.84  Aligned_cols=34  Identities=32%  Similarity=0.514  Sum_probs=30.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      -.||+|.|+|.+|+.++++|.+. +..+++|+|.+
T Consensus       206 g~~VaIqGfGnVG~~~A~~L~e~-GakVVaVsD~~  239 (410)
T PLN02477        206 GQTFVIQGFGNVGSWAAQLIHEK-GGKIVAVSDIT  239 (410)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEECCC
Confidence            36899999999999999999877 59999999874

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.54  E-value=1.4  Score=39.67  Aligned_cols=32  Identities=25%  Similarity=0.269  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ..||||+|+|.||..++..++++ +++|. +.|+
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~a-G~~V~-l~D~   38 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAH-GLDVV-AWDP   38 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC-CCeEE-EEeC
Confidence            35899999999999999999887 47765 4444

>PLN02306 hydroxypyruvate reductase

Probab=85.35  E-value=1.3  Score=40.91  Aligned_cols=29  Identities=31%  Similarity=0.551  Sum_probs=23.9

Q ss_pred             cEEEEEccChhHHHHHHHHH-cCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVIL-QRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~-~~p~~el~~v   33 (265)
                      .+|||+|+|.||+++++.+. .. ++++.+.
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~  195 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYY  195 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC-CCEEEEE
Confidence            68999999999999999985 44 5776654

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=85.28  E-value=4.3  Score=35.59  Aligned_cols=29  Identities=31%  Similarity=0.429  Sum_probs=21.8

Q ss_pred             EEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            8 INGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         8 I~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |.|+ |++|+.+++.|.++.+..-+.+.+.
T Consensus         2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~   31 (280)
T PF01073_consen    2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDR   31 (280)
T ss_pred             EEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence            6789 9999999999999875333334443

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=85.06  E-value=2.4  Score=37.31  Aligned_cols=31  Identities=23%  Similarity=0.362  Sum_probs=26.1

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      ++|-|.|+ |++|+.+++.|.++. .++.++..
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~r   36 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATVR   36 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHHCC-CEEEEEEc
Confidence            58999999 999999999999884 57766653

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=84.98  E-value=1.3  Score=40.76  Aligned_cols=30  Identities=20%  Similarity=0.378  Sum_probs=24.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      -.+|||+|+|.||+.+++.|... ++++.+.
T Consensus       116 gktvGIIG~G~IG~~va~~l~a~-G~~V~~~  145 (381)
T PRK00257        116 ERTYGVVGAGHVGGRLVRVLRGL-GWKVLVC  145 (381)
T ss_pred             cCEEEEECCCHHHHHHHHHHHHC-CCEEEEE
Confidence            36899999999999999999876 4776543

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=84.94  E-value=7  Score=36.78  Aligned_cols=101  Identities=14%  Similarity=0.241  Sum_probs=58.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh--------hhhhhheeeccc-CCcccccceeeeCCceEEECC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT--------DYMTYMFKYDSV-HGQWKHHELKVKDDKTLLFGE   73 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g   73 (265)
                      -.||+|=|+|.+|..+++.|.+. +..+++|+|.....        ..+.+++++-.. .+...     ....  . ..+
T Consensus       237 Gk~VaVqG~GnVg~~aa~~L~e~-GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~-----~~~~--~-~~~  307 (454)
T PTZ00079        237 GKTVVVSGSGNVAQYAVEKLLQL-GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLK-----EYAK--H-SST  307 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHH-----hhhh--c-cCC
Confidence            36999999999999999999876 59999999875111        111111100000 00000     0000  0 001


Q ss_pred             EEEEEEecCCCCCCCcccccccEEEEec-CCcccHHhHHHHHhCCCC
Q 024565           74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAK  119 (265)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~DvV~~at-~~~~~~~~~~~~~~~G~~  119 (265)
                        ....   +.+++ |. .+||+.+=|. ....+.+.++.+.+.|||
T Consensus       308 --a~~~---~~~~~-~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak  347 (454)
T PTZ00079        308 --AKYV---PGKKP-WE-VPCDIAFPCATQNEINLEDAKLLIKNGCK  347 (454)
T ss_pred             --cEEe---CCcCc-cc-CCccEEEeccccccCCHHHHHHHHHcCCe
Confidence              1111   23445 65 5799888765 455677888888888986

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=84.74  E-value=6.8  Score=33.67  Aligned_cols=30  Identities=27%  Similarity=0.365  Sum_probs=24.4

Q ss_pred             EEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            6 IGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         6 vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |-|.|+ |++|..+++.|.+.. .++.++...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   31 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDG-HEVTILTRS   31 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcC-CEEEEEeCC
Confidence            458899 999999999998764 787777643

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=84.45  E-value=1.4  Score=38.95  Aligned_cols=31  Identities=29%  Similarity=0.459  Sum_probs=24.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +|||+||+|.+|..+++.|.+.. +++. +.++
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~-v~~r   31 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAG-HEVT-VYNR   31 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCC-CEEE-EEeC
Confidence            48999999999999999999875 5543 4444

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=84.45  E-value=4.4  Score=36.05  Aligned_cols=86  Identities=15%  Similarity=0.106  Sum_probs=58.0

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      -||-|.|- |..|..+.+.+.+.+ -++++=+.+....+         +                   +.|  ++.+  .
T Consensus        13 ~~v~~~gi~~~~~~~~~~~~~~yg-t~~~~gV~p~~~~~---------~-------------------i~G--~~~y--~   59 (300)
T PLN00125         13 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGT---------E-------------------HLG--LPVF--N   59 (300)
T ss_pred             CeEEEecCCCHHHHHHHHHHHHhC-CcEEEEECCCCCCc---------e-------------------EcC--eecc--C
Confidence            58999999 999999999888775 34443333321111         0                   011  3343  3


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +.++++- ..++|+++.++|.....+.++++.++|+|.++|
T Consensus        60 sv~dlp~-~~~~DlAvI~vPa~~v~~al~e~~~~Gvk~~vI   99 (300)
T PLN00125         60 TVAEAKA-ETKANASVIYVPPPFAAAAILEAMEAELDLVVC   99 (300)
T ss_pred             CHHHHhh-ccCCCEEEEecCHHHHHHHHHHHHHcCCCEEEE
Confidence            4445530 013799999999999999999999999987766

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=84.40  E-value=3  Score=36.50  Aligned_cols=33  Identities=24%  Similarity=0.236  Sum_probs=25.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .++.|+|+|.+|+.+++.|.... +.-+.|.+++
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~g-~~~V~v~~R~  156 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDLG-VAEITIVNRT  156 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcC-CCEEEEEeCC
Confidence            58999999999999999999775 3334555553

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.29  E-value=7  Score=36.53  Aligned_cols=91  Identities=18%  Similarity=0.257  Sum_probs=51.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ..+|.|+|.|.+|...++.|.++. .+++. .|..........          +.    ....|         +.++...
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g-~~v~~-~d~~~~~~~~~~----------l~----~~~~g---------i~~~~g~   59 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNG-AEVAA-YDAELKPERVAQ----------IG----KMFDG---------LVFYTGR   59 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEE-EeCCCCchhHHH----------Hh----hccCC---------cEEEeCC
Confidence            358999999999999999999885 66554 343211110000          00    00011         2222211


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      ..+.+ +  .+.|+|+-+.+-.........+.+.|+  .++
T Consensus        60 ~~~~~-~--~~~d~vv~spgi~~~~p~~~~a~~~~i--~v~   95 (445)
T PRK04308         60 LKDAL-D--NGFDILALSPGISERQPDIEAFKQNGG--RVL   95 (445)
T ss_pred             CCHHH-H--hCCCEEEECCCCCCCCHHHHHHHHcCC--cEE
Confidence            12221 1  468999987665555566777778887  444

>PRK05865 hypothetical protein; Provisional

Probab=83.91  E-value=4.4  Score=41.32  Aligned_cols=31  Identities=26%  Similarity=0.530  Sum_probs=25.7

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |||.|.|+ |.+|+.+++.|.++. .+++++..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R   32 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQG-HEVVGIAR   32 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEC
Confidence            47999999 999999999998874 67766653

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.78  E-value=1.5  Score=38.46  Aligned_cols=29  Identities=28%  Similarity=0.323  Sum_probs=23.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .||+|+|+|.+|..++..|.++. .+|..+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G-~~V~~~   30 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSG-FQTTLV   30 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCC-CcEEEE
Confidence            58999999999999999998773 555543

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.76  E-value=4.1  Score=38.57  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=25.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +.||.|+|+|.+|+.+++.|.+.. .+ +.+.|.
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~~G-~~-V~~~D~   46 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSELG-CD-VVVADD   46 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCC-CE-EEEECC
Confidence            468999999999999999998775 44 444554

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=83.62  E-value=6.3  Score=34.82  Aligned_cols=28  Identities=18%  Similarity=0.269  Sum_probs=21.2

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVA   32 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~   32 (265)
                      .+|.|+|. +.+|+.++.+|.+. +..++.
T Consensus       159 k~vvViGrs~iVGkPla~lL~~~-~atVt~  187 (285)
T PRK14189        159 AHAVVIGRSNIVGKPMAMLLLQA-GATVTI  187 (285)
T ss_pred             CEEEEECCCCccHHHHHHHHHHC-CCEEEE
Confidence            58999999 66699999988865 355443

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=83.59  E-value=1.5  Score=39.15  Aligned_cols=32  Identities=25%  Similarity=0.314  Sum_probs=25.8

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |+..||||+|+|.||..++..++. .+++|+..
T Consensus         1 ~~i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~   32 (307)
T COG1250           1 MEIKKVAVIGAGVMGAGIAAVFAL-AGYDVVLK   32 (307)
T ss_pred             CCccEEEEEcccchhHHHHHHHhh-cCCceEEE
Confidence            456799999999999999999888 44665433

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=83.51  E-value=5.3  Score=37.14  Aligned_cols=30  Identities=43%  Similarity=0.654  Sum_probs=23.7

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ||.|+|.|.+|+.++++|.++. .+|. ++|.
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G-~~V~-~sD~   30 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKG-AEVT-VTDL   30 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCC-CEEE-EEeC
Confidence            5899999999999999999874 5543 4554

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=83.29  E-value=2.6  Score=37.08  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=26.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .||.|+|+|-+|+.++..|.... +.-+.|.++.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G-~~~I~I~nR~  160 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLG-VERLTIFDVD  160 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcC-CCEEEEECCC
Confidence            47999999999999999999774 5445666663

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.25  E-value=2.2  Score=35.68  Aligned_cols=34  Identities=15%  Similarity=0.163  Sum_probs=26.7

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |++++|-|.|+ |.+|+++++.|.++. .+++.+..
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g-~~v~~~~~   38 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAG-ADVVVHYR   38 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeC
Confidence            34578999999 999999999998875 46554443

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.21  E-value=5.8  Score=37.08  Aligned_cols=84  Identities=20%  Similarity=0.192  Sum_probs=49.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCC-eEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec-
Q 024565            4 VKIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV-   81 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~-~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-   81 (265)
                      .||.|+|.|..|+..++.|..+.+ +++. +.|..........          +.      . |         +.++.. 
T Consensus         8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~----------l~------~-g---------~~~~~g~   60 (438)
T PRK04663          8 KNVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQ----------LP------E-D---------VELHSGG   60 (438)
T ss_pred             ceEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHH----------hh------c-C---------CEEEeCC
Confidence            679999999999999999998754 6654 4553211110000          00      0 1         222211 


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      .+++.+    .++|+|+-+.+-..+......+.+.|+
T Consensus        61 ~~~~~~----~~~d~vV~SpgI~~~~p~~~~a~~~gi   93 (438)
T PRK04663         61 WNLEWL----LEADLVVTNPGIALATPEIQQVLAAGI   93 (438)
T ss_pred             CChHHh----ccCCEEEECCCCCCCCHHHHHHHHCCC
Confidence            233334    468988876655445556667778887

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=83.03  E-value=2.3  Score=35.45  Aligned_cols=31  Identities=19%  Similarity=0.232  Sum_probs=25.6

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      +++|-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~   36 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADG-AKVVIYD   36 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence            368999999 999999999999885 5665554

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=82.95  E-value=15  Score=31.21  Aligned_cols=31  Identities=19%  Similarity=0.325  Sum_probs=24.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ..+|-|+|+|.++.+=++.|.+.. .+++.|+
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVa   55 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKKG-CYVYILS   55 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CEEEEEc
Confidence            468999999999999888888764 5555554

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=82.87  E-value=4.3  Score=36.07  Aligned_cols=29  Identities=14%  Similarity=0.313  Sum_probs=23.0

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|+|+|- |.+|+.+++.|.+.. .+++..
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~g-~tVtv~  188 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAAN-ATVTIA  188 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhCC-CEEEEE
Confidence            68999997 999999999998763 554433

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.77  E-value=7.3  Score=36.64  Aligned_cols=31  Identities=13%  Similarity=0.267  Sum_probs=25.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .||+|+|+|..|+.+++.|.+.. .++ .++|.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G-~~V-~~~D~   45 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLG-AKV-TAFDK   45 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCC-CEE-EEECC
Confidence            58999999999999999999885 554 44554

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=82.66  E-value=3  Score=39.57  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=25.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ..+++|+|+|.+|+.++..|.+.. +++. +.++
T Consensus       332 ~k~vlIiGaGgiG~aia~~L~~~G-~~V~-i~~R  363 (477)
T PRK09310        332 NQHVAIVGAGGAAKAIATTLARAG-AELL-IFNR  363 (477)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCC-CEEE-EEeC
Confidence            468999999999999999999875 5665 4444

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.23  E-value=5.7  Score=37.79  Aligned_cols=82  Identities=18%  Similarity=0.141  Sum_probs=50.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe-cC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG-VR   82 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-~~   82 (265)
                      .||.|+|+|..|...++.|.... .++.. +|....  ....+.                ..|         +.++. ..
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~~-~D~~~~--~~~~l~----------------~~g---------~~~~~~~~   63 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFG-ARPTV-CDDDPD--ALRPHA----------------ERG---------VATVSTSD   63 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCC-CEEEE-EcCCHH--HHHHHH----------------hCC---------CEEEcCcc
Confidence            58999999999999999888764 66554 664211  111100                011         11111 11


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      .++.+    .++|+||.+.+-..+......+.+.|+
T Consensus        64 ~~~~l----~~~D~VV~SpGi~~~~p~~~~a~~~gi   95 (488)
T PRK03369         64 AVQQI----ADYALVVTSPGFRPTAPVLAAAAAAGV   95 (488)
T ss_pred             hHhHh----hcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence            12223    468999998876666667778888887

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=82.15  E-value=5.1  Score=37.66  Aligned_cols=84  Identities=23%  Similarity=0.254  Sum_probs=48.8

Q ss_pred             ccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      ..||.|+|.|..|.. ++++|.++. .++ .++|..... ....+.                +.|         +.++..
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G-~~V-~~~D~~~~~-~~~~l~----------------~~g---------i~~~~~   58 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLG-YKV-SGSDLKESA-VTQRLL----------------ELG---------AIIFIG   58 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCC-CeE-EEECCCCCh-HHHHHH----------------HCC---------CEEeCC
Confidence            368999999999999 799998885 664 345432111 111110                111         122211


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      .+++.+    .++|+|+-+.+-.........+.+.|+
T Consensus        59 ~~~~~~----~~~d~vv~spgi~~~~~~~~~a~~~~i   91 (461)
T PRK00421         59 HDAENI----KDADVVVYSSAIPDDNPELVAARELGI   91 (461)
T ss_pred             CCHHHC----CCCCEEEECCCCCCCCHHHHHHHHCCC
Confidence            233333    468988886555445556677778887

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.14  E-value=1.5  Score=41.24  Aligned_cols=29  Identities=28%  Similarity=0.376  Sum_probs=24.1

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELV   31 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~   31 (265)
                      +..+|+|||||..|...++.|.++ +++++
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~-g~~v~   33 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLRE-GHEVV   33 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHC-CCCce
Confidence            467999999999999999999987 34443

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=82.12  E-value=0.58  Score=41.86  Aligned_cols=87  Identities=23%  Similarity=0.247  Sum_probs=43.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcC-CCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      .+++|+|+|..++..++++... | ++-+.|.+++.. .+.++.-++  .    +         +       ..+...  
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~--~----~---------~-------~~v~~~--  183 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLR--D----L---------G-------VPVVAV--  183 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHH--C----C---------C-------TCEEEE--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhc--c----c---------c-------ccceec--
Confidence            5799999999999999999874 6 888899888533 222221110  0    0         1       112222  


Q ss_pred             CCCCCCCcccccccEEEEecCCccc-HHhHHHHHhCCC
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTD-KDKAAAHLKGGA  118 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~-~~~~~~~~~~G~  118 (265)
                      .++++.   ..++|+|+.||++... .-.-...++.|.
T Consensus       184 ~~~~~a---v~~aDii~taT~s~~~~P~~~~~~l~~g~  218 (313)
T PF02423_consen  184 DSAEEA---VRGADIIVTATPSTTPAPVFDAEWLKPGT  218 (313)
T ss_dssp             SSHHHH---HTTSSEEEE----SSEEESB-GGGS-TT-
T ss_pred             cchhhh---cccCCEEEEccCCCCCCccccHHHcCCCc
Confidence            344433   2689999999998662 112223456776

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=82.05  E-value=8.6  Score=35.61  Aligned_cols=35  Identities=26%  Similarity=0.506  Sum_probs=30.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI   38 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~   38 (265)
                      -.||+|=|+|.+|+.+++.|.+. +.+|+++.|...
T Consensus       207 G~rVaVQG~GNVg~~aa~~l~~~-GAkvva~sds~g  241 (411)
T COG0334         207 GARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDSKG  241 (411)
T ss_pred             CCEEEEECccHHHHHHHHHHHHc-CCEEEEEEcCCC
Confidence            36899999999999999999877 799999988753

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=81.97  E-value=4.2  Score=35.95  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=27.0

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .+|-|.|+ |++|+.+++.|.++. .++.++...
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~   38 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLLRG-YTVKATVRD   38 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECC
Confidence            68999999 999999999999874 677766654

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=81.92  E-value=2.6  Score=35.91  Aligned_cols=32  Identities=19%  Similarity=0.310  Sum_probs=26.9

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      ++||.|.|+ |.+|+.+++.|.++. .++.++..
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~R   49 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAKG-FAVKAGVR   49 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCC-CEEEEEec
Confidence            579999999 999999999998874 67766653

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=81.90  E-value=6.6  Score=37.65  Aligned_cols=33  Identities=18%  Similarity=0.034  Sum_probs=26.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .-||.|+|+|.+|...++.+.... .+ +.+.|.+
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lG-A~-V~a~D~~  197 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLG-AI-VRAFDTR  197 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC-CE-EEEEeCC
Confidence            368999999999999999988775 45 5555553

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=81.77  E-value=2.1  Score=38.72  Aligned_cols=32  Identities=13%  Similarity=0.348  Sum_probs=26.9

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |++..|.|||+|.+|..++..|.++ +.+++-|
T Consensus         1 ~~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~li   32 (376)
T PRK11259          1 TMRYDVIVIGLGSMGSAAGYYLARR-GLRVLGL   32 (376)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHC-CCeEEEE
Confidence            6678899999999999999999988 4665544

>PRK06823 ornithine cyclodeaminase; Validated

Probab=81.72  E-value=2.3  Score=38.08  Aligned_cols=35  Identities=23%  Similarity=0.143  Sum_probs=30.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI   38 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~   38 (265)
                      .+++|+|+|..++..++++..-..++-+.|.+++.
T Consensus       129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~  163 (315)
T PRK06823        129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSE  163 (315)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCH
Confidence            57999999999999999998776688888888753

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=81.68  E-value=3.3  Score=37.27  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             EEEEEcc-ChhHHHHHHHHHcCC
Q 024565            5 KIGINGF-GRIGRLVARVILQRD   26 (265)
Q Consensus         5 ~vgI~G~-G~~G~~l~~~L~~~p   26 (265)
                      ||+|+|+ |.+|..++..|....
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~   23 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGR   23 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhcc
Confidence            6999999 999999999998754

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=81.49  E-value=2.1  Score=39.39  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=28.3

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |+++.|.|||+|..|...++.|.+.. ++++-+=
T Consensus         1 ~~~~DVvIVGaGPAGs~aA~~la~~G-~~VlvlE   33 (396)
T COG0644           1 MMEYDVVIVGAGPAGSSAARRLAKAG-LDVLVLE   33 (396)
T ss_pred             CceeeEEEECCchHHHHHHHHHHHcC-CeEEEEe
Confidence            56789999999999999999999886 7766553

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=81.38  E-value=2.1  Score=41.14  Aligned_cols=29  Identities=31%  Similarity=0.566  Sum_probs=24.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.||+++++.|... ++++.+.
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~  167 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAF-GMKVLAY  167 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEE
Confidence            6899999999999999999876 4776654

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=81.28  E-value=2.9  Score=38.09  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=26.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ..||.|+|+|-+|.+++..|.... +.-..+.|.
T Consensus        28 ~~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD~   60 (355)
T PRK05597         28 DAKVAVIGAGGLGSPALLYLAGAG-VGHITIIDD   60 (355)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC
Confidence            469999999999999999998763 655566654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=81.21  E-value=2  Score=39.55  Aligned_cols=35  Identities=29%  Similarity=0.226  Sum_probs=29.0

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcC-CCeEEEEEec
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQR-DDVELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~   35 (265)
                      |++.||.|||+|..|...++.|.++ ++.+++-|..
T Consensus         1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~   36 (396)
T PRK09754          1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSD   36 (396)
T ss_pred             CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCC
Confidence            7778999999999999999999876 4567766654

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=81.20  E-value=2.1  Score=39.51  Aligned_cols=28  Identities=18%  Similarity=0.294  Sum_probs=23.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELV   31 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~   31 (265)
                      +||.|||+|..|..++..|.++++++++
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~   28 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQ   28 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEE
Confidence            5899999999999999999987655543

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=80.95  E-value=2.3  Score=38.78  Aligned_cols=35  Identities=17%  Similarity=0.186  Sum_probs=28.6

Q ss_pred             CccEEEEEccChhHHHHHHHHHcC-CCeEEEEEecc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQR-DDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~   36 (265)
                      |+.+|.|+|+|..|..+++.|.++ ++.+++-|...
T Consensus         1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~   36 (377)
T PRK04965          1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITAD   36 (377)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCC
Confidence            136899999999999999999864 77888877643

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=80.89  E-value=2.1  Score=40.62  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=26.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .+|||+|+|.+|..+++.|.++. ++|. +.+++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V~-v~dr~   33 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRG-FKIS-VYNRT   33 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCC-CeEE-EEeCC
Confidence            68999999999999999999885 5544 45553

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=80.70  E-value=1.4  Score=38.71  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=31.1

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..||+|+|+ |-||+.|--+|..+|.+.-.+++|..
T Consensus        28 ~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~   63 (345)
T KOG1494|consen   28 GLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIA   63 (345)
T ss_pred             cceEEEEecCCccCccHHHHHhcCcccceeeeeecc
Confidence            579999999 99999999888888999888888765

>PLN00198 anthocyanidin reductase; Provisional

Probab=80.69  E-value=2.7  Score=37.47  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=27.3

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |++++|-|.|+ |++|+.+++.|.+.. .++.++.
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~   40 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTV   40 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence            34688999999 999999999999874 5776554

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=80.67  E-value=2.1  Score=40.04  Aligned_cols=34  Identities=18%  Similarity=0.135  Sum_probs=28.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC-CCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQR-DDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~   36 (265)
                      |+||.|||+|..|...++.|.++ ++.+++-|...
T Consensus         1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~   35 (438)
T PRK13512          1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKD   35 (438)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECC
Confidence            36999999999999999999764 67888777643

>PRK15076 alpha-galactosidase; Provisional

Probab=80.65  E-value=1.4  Score=41.21  Aligned_cols=34  Identities=24%  Similarity=0.072  Sum_probs=20.1

Q ss_pred             cEEEEEccChhHH--HHHHHHHcCCCeE--EEEEeccc
Q 024565            4 VKIGINGFGRIGR--LVARVILQRDDVE--LVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~--~l~~~L~~~p~~e--l~~v~~~~   37 (265)
                      +||+|+|+|.+|.  .+++.+.....+.  -+.+.|..
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid   39 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDID   39 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCC
Confidence            7999999999873  3333454232232  24566653

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=80.54  E-value=1.6  Score=39.58  Aligned_cols=108  Identities=18%  Similarity=0.202  Sum_probs=60.7

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEE--EEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVEL--VAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ..+-|.|| |+.|+-+++.+.+...++.  .+|+.++  ..++...++.  .         .+..++.|.  ...+-+..
T Consensus         6 yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn--~~KL~~vL~~--~---------~~k~~~~ls--~~~i~i~D   70 (423)
T KOG2733|consen    6 YDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRN--EKKLQEVLEK--V---------GEKTGTDLS--SSVILIAD   70 (423)
T ss_pred             eeEEEEccccccceeeHHHHhhhhcccCceEEEecCC--HHHHHHHHHH--H---------hhccCCCcc--cceEEEec
Confidence            56899999 9999999999887433332  3455553  2232222210  0         001111111  11122222


Q ss_pred             cCCCCCCCcccccccEEEEecCCcc--cHHhHHHHHhCCCCeEEEcCC
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFT--DKDKAAAHLKGGAKKVIISAP  126 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~--~~~~~~~~~~~G~~~vvis~~  126 (265)
                      ..|++.++=-+.++.+|+-|.++..  -...++.+.+.|+.++.||+.
T Consensus        71 ~~n~~Sl~emak~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGE  118 (423)
T KOG2733|consen   71 SANEASLDEMAKQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGE  118 (423)
T ss_pred             CCCHHHHHHHHhhhEEEEeccccceecCcHHHHHHHHcCCceeccCCC
Confidence            2334333211467899999999864  234567888999988888876

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=80.53  E-value=1.9  Score=37.88  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=20.8

Q ss_pred             EEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            8 INGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         8 I~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+|.|.+|..+++.|.+.. .++ .+.++
T Consensus         1 ~IGlG~mG~~mA~~L~~~G-~~V-~v~dr   27 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAG-HPV-RVFDL   27 (288)
T ss_pred             CCcccHhHHHHHHHHHhCC-CeE-EEEeC
Confidence            5899999999999998774 454 34455

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=80.52  E-value=2.3  Score=40.87  Aligned_cols=30  Identities=33%  Similarity=0.534  Sum_probs=25.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .+|||+|+|.||+.+++.|... ++++.+..
T Consensus       141 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d  170 (526)
T PRK13581        141 KTLGIIGLGRIGSEVAKRAKAF-GMKVIAYD  170 (526)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence            5899999999999999999876 47766543

>cd08230 glucose_DH Glucose dehydrogenase

Probab=80.50  E-value=11  Score=33.94  Aligned_cols=31  Identities=29%  Similarity=0.364  Sum_probs=24.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      -+|.|+|+|.+|...+.++.... .+++++..
T Consensus       174 ~~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~  204 (355)
T cd08230         174 RRALVLGAGPIGLLAALLLRLRG-FEVYVLNR  204 (355)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CeEEEEec
Confidence            47999999999999998877664 67766654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=80.43  E-value=7.2  Score=34.45  Aligned_cols=30  Identities=17%  Similarity=0.351  Sum_probs=22.9

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .+|.|+|. +.+|+.++.+|.+. +..++...
T Consensus       159 k~vvVIGrs~~VG~pla~lL~~~-gatVtv~~  189 (286)
T PRK14175        159 KNAVVIGRSHIVGQPVSKLLLQK-NASVTILH  189 (286)
T ss_pred             CEEEEECCCchhHHHHHHHHHHC-CCeEEEEe
Confidence            68999999 55999999999876 35554443

>PLN02240 UDP-glucose 4-epimerase

Probab=80.38  E-value=2.8  Score=37.49  Aligned_cols=32  Identities=22%  Similarity=0.243  Sum_probs=27.0

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      +..||-|.|+ |.+|..+++.|.+.. .+|+++.
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~   36 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAG-YKVVVID   36 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence            3469999999 999999999999875 6777764

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=80.35  E-value=2.5  Score=38.89  Aligned_cols=29  Identities=24%  Similarity=0.323  Sum_probs=24.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|.|||+|.+|...++.|++. +.+++.+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vl   30 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQR-GYQVTVF   30 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEE
Confidence            6999999999999999999986 4665444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	265
3e5r_O	337	Crystal Structure And Functional Analysis Of Glycer		1e-128
3e6a_O	336	Crystal Structure And Functional Analysis Of Glycer		1e-128
1u8f_O	335	Crystal Structure Of Human Placental Glyceraldehyde		8e-98
1znq_O	338	Crsytal Structure Of Human Liver Gapdh Length = 338		9e-98
1ihx_A	333	Crystal Structure Of Two D-Glyceraldehyde-3-Phospha		2e-96
1szj_G	333	Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydr		5e-96
1gpd_G	334	Studies Of Asymmetry In The Three-Dimensional Struc		9e-96
4gpd_1	333	The Structure Of Lobster Apo-D-Glyceraldehyde-3-Pho		9e-96
1dss_G	333	Structure Of Active-Site Carboxymethylated D-Glycer		1e-94
3gpd_R	334	Twinning In Crystals Of Human Skeletal Muscle D-Gly		4e-94
2i5p_O	342	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		4e-94
4iq8_A	340	Crystal Structure Of Glyceraldehyde-3-phosphate Deh		6e-94
3pym_A	332	Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Res		7e-94
1j0x_O	332	Crystal Structure Of The Rabbit Muscle Glyceraldehy		1e-93
2vyn_D	334	Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotet		2e-89
3h9e_B	346	Crystal Structure Of Human Sperm-Specific Glycerald		2e-88
3cps_A	354	Crystal Structure Of Cryptosporidium Parvum Glycera		4e-88
1vsu_A	359	Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate		5e-88
3cif_A	359	Crystal Structure Of C153s Mutant Glyceraldehyde 3-		1e-86
1gad_O	330	Comparison Of The Structures Of Wild Type And A N31		7e-86
1s7c_A	331	Crystal Structure Of Mes Buffer Bound Form Of Glyce		7e-86
1gae_O	330	Comparison Of The Structures Of Wild Type And A N31		8e-86
3sth_A	361	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		8e-85
2vyn_A	331	Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotet		1e-84
1ywg_O	337	The Structure Of Glyceraldehyde-3-Phosphate Dehydro		4e-83
2b4r_O	345	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		8e-83
1dc4_A	330	Structural Analysis Of Glyceraldehyde 3-Phosphate D		1e-76
2x0n_A	359	Structure Of Glycosomal Glyceraldehyde-3-Phosphate		1e-74
1k3t_A	359	Structure Of Glycosomal Glyceraldehyde-3-Phosphate		6e-73
3dmt_C	359	Structure Of Glycosomal Glyceraldehyde-3-Phosphate		2e-71
1a7k_A	360	Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase		8e-71
1gyp_A	358	Crystal Structure Of Glycosomal Glyceraldehyde-3-Ph		9e-71
1gd1_O	334	Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydr		2e-66
3dbv_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		7e-66
1dbv_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		2e-65
1npt_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		4e-65
1nq5_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		4e-65
1hdg_O	332	The Crystal Structure Of Holo-glyceraldehyde-3-phos		2e-61
2ep7_A	342	Structural Study Of Project Id Aq_1065 From Aquifex		1e-59
3doc_A	335	Crystal Structure Of Trka Glyceraldehyde-3-Phosphat		2e-57
3hja_A	356	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		8e-57
2pkq_O	368	Crystal Structure Of The Photosynthetic A2b2-Glycer		5e-54
3l0d_A	356	Crystal Structure Of Glyceraldehyde-3-phosphate Deh		9e-54
4dib_A	345	The Crystal Structure Of Glyceraldehyde-3-Phosphate		6e-53
3k73_Q	336	Crystal Structure Of Phosphate Bound Holo Glycerald		6e-52
3vaz_P	344	Crystal Structure Of Staphylococcal Gapdh1 In A Hex		6e-52
3lvf_P	338	Crystal Structure Of Holo Glyceraldehyde-3-Phosphat		6e-52
3lc7_O	339	Crystal Structure Of Apo Glyceraldehyde-3-Phosphate		6e-52
1rm3_O	337	Crystal Structure Of Mutant T33a Of Photosynthetic		1e-51
1nbo_O	337	The Dual Coenzyme Specificity Of Photosynthetic Gly		2e-51
2pkr_O	365	Crystal Structure Of (A+cte)4 Chimeric Form Of Phot		2e-51
1rm5_O	337	Crystal Structure Of Mutant S188a Of Photosynthetic		3e-51
3gnq_A	344	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		3e-51
3lc1_P	336	Crystal Structure Of H178n Mutant Of Glyceraldehyde		4e-51
1jn0_O	335	Crystal Structure Of The Non-Regulatory A4 Isoform		5e-51
1cer_O	331	Determinants Of Enzyme Thermostability Observed In		5e-51
3hq4_R	336	Crystal Structure Of C151s Mutant Of Glyceraldehyde		1e-50
3k9q_Q	336	Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde		2e-50
1vc2_A	331	Crystal Structure Of Glyceraldehyde 3-Phosphate Deh		5e-50
3ksd_Q	336	Crystal Structure Of C151s+h178n Mutant Of Glyceral		7e-50
2g82_O	331	High Resolution Structures Of Thermus Aquaticus Gly		1e-49
3b1j_A	339	Crystal Structure Of Dehydrogenese Length = 339		6e-47
2d2i_A	380	Crystal Structure Of Nadp-Dependent Glyceraldehyde-		7e-47
3k2b_A	337	Crystal Structure Of Photosynthetic A4 Isoform Glyc		6e-46
1obf_O	335	The Crystal Structure Of Glyceraldehyde 3-Phosphate		3e-45
2xf8_A	338	Structure Of The D-Erythrose-4-Phosphate Dehydrogen		6e-41
2x5j_O	339	Crystal Structure Of The Apoform Of The D-Erythrose		6e-41
2x5k_O	339	Structure Of An Active Site Mutant Of The D-Erythro		2e-38

>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza Sativa Length = 337

Iteration: 1
 Score =  455 bits (1170), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/265 (82%), Positives = 236/265 (89%)
Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH +
Sbjct: 1   MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSD 60
Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
           +K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFT               
Sbjct: 61  IKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKK 120
Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           V+ISAPSKDAPMFV GVNE +Y  +++IVSNASCTTNCLAPLAKVIHD FGI+EGLMTTV
Sbjct: 121 VVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTV 180
Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           H+ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPTV
Sbjct: 181 HAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTV 240
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVR+EK ASYD IK+AIK
Sbjct: 241 DVSVVDLTVRIEKAASYDAIKSAIK 265

>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza Sativa Length = 336

Iteration: 1
 Score =  452 bits (1164), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/264 (82%), Positives = 235/264 (89%)
Query: 2   GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
           GK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH ++
Sbjct: 1   GKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDI 60
Query: 62  KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 121
           K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFT               V
Sbjct: 61  KIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKV 120
Query: 122 IISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           +ISAPSKDAPMFV GVNE +Y  +++IVSNASCTTNCLAPLAKVIHD FGI+EGLMTTVH
Sbjct: 121 VISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVH 180
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           +ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPTVD
Sbjct: 181 AITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVD 240
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
           VSVVDLTVR+EK ASYD IK+AIK
Sbjct: 241 VSVVDLTVRIEKAASYDAIKSAIK 264

>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3- Phosphate Dehydrogenase At 1.75 Resolution Length = 335

Iteration: 1
 Score =  352 bits (904), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 174/265 (65%), Positives = 202/265 (76%), Gaps = 2/265 (0%)
Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           MGKVK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  
Sbjct: 1   MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGT 59
Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
           +K ++ K ++ G  P+T+F  R+P +I W + GAEYVVESTGVFT               
Sbjct: 60  VKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 118
Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           VIISAPS DAPMFV+GVN  +Y   L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTV
Sbjct: 119 VIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTV 178
Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           H+ITATQKTVDGPS K WR GR A  NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT 
Sbjct: 179 HAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTA 238
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           +VSVVDLT RLEK A YD+IK  +K
Sbjct: 239 NVSVVDLTCRLEKPAKYDDIKKVVK 263

>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh Length = 338

Iteration: 1
 Score =  352 bits (904), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 174/265 (65%), Positives = 202/265 (76%), Gaps = 2/265 (0%)
Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           MGKVK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  
Sbjct: 4   MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGT 62
Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
           +K ++ K ++ G  P+T+F  R+P +I W + GAEYVVESTGVFT               
Sbjct: 63  VKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 121
Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           VIISAPS DAPMFV+GVN  +Y   L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTV
Sbjct: 122 VIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTV 181
Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           H+ITATQKTVDGPS K WR GR A  NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT 
Sbjct: 182 HAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTA 241
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           +VSVVDLT RLEK A YD+IK  +K
Sbjct: 242 NVSVVDLTCRLEKPAKYDDIKKVVK 266

>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetry Length = 333

Iteration: 1
 Score =  348 bits (892), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 175/261 (67%), Positives = 206/261 (78%), Gaps = 3/261 (1%)
Query: 5   KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
           KIGINGFGRIGRLV R  L+    ++VAVNDPFI  +YM YMFKYDS HG +K  E+KV+
Sbjct: 2   KIGINGFGRIGRLVLRTALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKVE 59
Query: 65  DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
           D   ++ G+K +TVF    PE IPW++ GAEY+VESTGVFT               VIIS
Sbjct: 60  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 125 APSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184
           APS DAPMFV GVN  +Y  ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 185 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 244
           ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 245 VDLTVRLEKDASYDEIKAAIK 265
           VDLTVRL K+ SYD+IKAA+K
Sbjct: 239 VDLTVRLGKECSYDDIKAAMK 259

>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase From Palinurus Versicolor Refined 2.0 Angstrom Resolution Length = 333

Iteration: 1
 Score =  347 bits (889), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 174/261 (66%), Positives = 205/261 (78%), Gaps = 3/261 (1%)
Query: 5   KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
           KIGINGFGRIGRLV R  L+    ++VAVNDPFI  +YM YMFKYDS HG +K  E+K +
Sbjct: 2   KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKAE 59
Query: 65  DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
           D   ++ G+K +TVF    PE IPW++ GAEY+VESTGVFT               VIIS
Sbjct: 60  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 125 APSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184
           APS DAPMFV GVN  +Y  ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 185 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 244
           ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 245 VDLTVRLEKDASYDEIKAAIK 265
           VDLTVRL K+ SYD+IKAA+K
Sbjct: 239 VDLTVRLGKECSYDDIKAAMK 259

>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase Length = 334

Iteration: 1
 Score =  346 bits (887), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 174/261 (66%), Positives = 205/261 (78%), Gaps = 3/261 (1%)
Query: 5   KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
           KIGINGFGRIGRLV R  L     ++VAVNDPFI  +YM YMFKYDS HG +K  E+K++
Sbjct: 3   KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFKG-EVKME 60
Query: 65  DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
           D   ++ G+K +TVF    PE IPW++ GAEY+VESTGVFT               V+IS
Sbjct: 61  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVIS 119
Query: 125 APSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184
           APS DAPMFV GVN  +Y  ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 120 APSADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 179
Query: 185 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 244
           ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT DVSV
Sbjct: 180 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSV 239
Query: 245 VDLTVRLEKDASYDEIKAAIK 265
           VDLTVRL K+ SYD+IKAA+K
Sbjct: 240 VDLTVRLGKECSYDDIKAAMK 260

>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase At 3.0 Angstroms Resolution Length = 333

Iteration: 1
 Score =  346 bits (887), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 174/261 (66%), Positives = 205/261 (78%), Gaps = 3/261 (1%)
Query: 5   KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
           KIGINGFGRIGRLV R  L     ++VAVNDPFI  +YM YMFKYDS HG +K  E+K++
Sbjct: 2   KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFKG-EVKME 59
Query: 65  DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
           D   ++ G+K +TVF    PE IPW++ GAEY+VESTGVFT               V+IS
Sbjct: 60  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVIS 118
Query: 125 APSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184
           APS DAPMFV GVN  +Y  ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 185 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 244
           ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT DVSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSV 238
Query: 245 VDLTVRLEKDASYDEIKAAIK 265
           VDLTVRL K+ SYD+IKAA+K
Sbjct: 239 VDLTVRLGKECSYDDIKAAMK 259

>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated D-Glyceraldehyde-3- Phosphate Dehydrogenase From Palinurus Versicolor Length = 333

Iteration: 1
 Score =  342 bits (877), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 173/261 (66%), Positives = 204/261 (78%), Gaps = 3/261 (1%)
Query: 5   KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
           KIGINGFGRIGRLV R  L+    ++VAVNDPFI  +YM YMFKYDS HG +K  E+K +
Sbjct: 2   KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKAE 59
Query: 65  DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
           D   ++ G+K +TVF    PE IPW++ GAEY+VESTGVFT               VIIS
Sbjct: 60  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 125 APSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184
           APS DAPMFV GVN  +Y  ++ +VSNAS TTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASXTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 185 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 244
           ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 245 VDLTVRLEKDASYDEIKAAIK 265
           VDLTVRL K+ SYD+IKAA+K
Sbjct: 239 VDLTVRLGKECSYDDIKAAMK 259

>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle D-Glyceraldehyde-3- Phosphate Dehydrogenase Length = 334

Iteration: 1
 Score =  340 bits (873), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 167/264 (63%), Positives = 199/264 (75%), Gaps = 2/264 (0%)
Query: 2   GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
           GKVK+G++GFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ H  +
Sbjct: 1   GKVKVGVDGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTV 59
Query: 62  KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 121
           K +D K ++ G K +T+F  R+PE I W + G  YVVESTGVFT               +
Sbjct: 60  KAEDGKLVIDG-KAITIFQERDPENIKWGDAGTAYVVESTGVFTTMEKAGAHLKGGAKRI 118
Query: 122 IISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           +ISAPS DAPMFV+GVN  +Y   L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH
Sbjct: 119 VISAPSADAPMFVMGVNHFKYANSLKIISNASCTTNCLAPLAKVIHDHFGIVEGLMTTVH 178
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           +ITATQKTVD PS K WRGGR A+ N+IP+STGAAKAVGKV+P L+GKLTGMAFRVPT +
Sbjct: 179 AITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVPTAN 238
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
           VSV+DLT RLEK A YD+IK  +K
Sbjct: 239 VSVLDLTCRLEKPAKYDDIKKVVK 262

>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase Isoform 1 From K. Marxianus Length = 342

Iteration: 1
 Score =  340 bits (872), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 171/262 (65%), Positives = 198/262 (75%), Gaps = 3/262 (1%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           V I INGFGRIGRLV R+ L+R ++++VA+NDPFI+ DY  YMFKYDS HG++K      
Sbjct: 15  VSIAINGFGRIGRLVLRIALERKNIDVVAINDPFISVDYAAYMFKYDSTHGKYKGEV--S 72
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
            D   L+   K V VF  ++P  +PW + G +  V+STGVF                V+I
Sbjct: 73  HDGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAKKVVI 132
Query: 124 SAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
           +APSK APMFVVGVNE +Y  E  IVSNASCTTNCLAP+AK+I+D+FGI EGLMTTVHSI
Sbjct: 133 TAPSKTAPMFVVGVNEDKYNGE-KIVSNASCTTNCLAPIAKIINDEFGIEEGLMTTVHSI 191
Query: 184 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 243
           TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGMAFRVPT DVS
Sbjct: 192 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTTDVS 251
Query: 244 VVDLTVRLEKDASYDEIKAAIK 265
           VVDLTV+L K A+YDEIKAA+K
Sbjct: 252 VVDLTVKLVKAATYDEIKAAVK 273

>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate Dehydrogenase 3 From Saccharomyces Cerevisiae Length = 340

Iteration: 1
 Score =  340 bits (871), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 166/262 (63%), Positives = 195/262 (74%), Gaps = 2/262 (0%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           V++ INGFGRIGRLV R+ L R +VE+VA+NDPFIT DY  YMFKYDS HG++       
Sbjct: 10  VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEV--S 67
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
            DDK ++   K +  +  R+P  +PW  +  +  ++STGVF                V+I
Sbjct: 68  HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 127
Query: 124 SAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
           +APS  APMFV+GVNE +Y  +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 128 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 187
Query: 184 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 243
           TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGMAFRVPTVDVS
Sbjct: 188 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 247
Query: 244 VVDLTVRLEKDASYDEIKAAIK 265
           VVDLTV+L K+ +YDEIK  +K
Sbjct: 248 VVDLTVKLNKETTYDEIKKVVK 269

>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution Length = 332

Iteration: 1
 Score =  340 bits (871), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 166/262 (63%), Positives = 195/262 (74%), Gaps = 2/262 (0%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           V++ INGFGRIGRLV R+ L R +VE+VA+NDPFIT DY  YMFKYDS HG++       
Sbjct: 2   VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEV--S 59
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
            DDK ++   K +  +  R+P  +PW  +  +  ++STGVF                V+I
Sbjct: 60  HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119
Query: 124 SAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
           +APS  APMFV+GVNE +Y  +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 179
Query: 184 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 243
           TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGMAFRVPTVDVS
Sbjct: 180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 239
Query: 244 VVDLTVRLEKDASYDEIKAAIK 265
           VVDLTV+L K+ +YDEIK  +K
Sbjct: 240 VVDLTVKLNKETTYDEIKKVVK 261

>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh) Length = 332

Iteration: 1
 Score =  338 bits (868), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 171/262 (65%), Positives = 197/262 (75%), Gaps = 2/262 (0%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ H  +K 
Sbjct: 1   VKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKA 59
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
           ++ K ++ G K +T+F  R+P  I W + GAEYVVESTGVFT               VII
Sbjct: 60  ENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVII 118
Query: 124 SAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
           SAPS DAPMFV+GVN  +Y   L IVSNAS TTNCLAPLAKVIHD FGIVEGLMTTVH+I
Sbjct: 119 SAPSADAPMFVMGVNHEKYDNSLKIVSNASXTTNCLAPLAKVIHDHFGIVEGLMTTVHAI 178
Query: 184 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 243
           TATQKTVDGPS K WR GR A+ NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT +VS
Sbjct: 179 TATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVS 238
Query: 244 VVDLTVRLEKDASYDEIKAAIK 265
           VVDLT RLEK A YD+IK  +K
Sbjct: 239 VVDLTCRLEKAAKYDDIKKVVK 260

>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer Length = 334

Iteration: 1
 Score =  325 bits (832), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 166/263 (63%), Positives = 198/263 (75%), Gaps = 4/263 (1%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+GINGFGRIGRLV RV +++  V +VAVNDPFI  +YM YMFKYDS HG++K   ++ 
Sbjct: 2   VKVGINGFGRIGRLVLRVCMEKG-VRVVAVNDPFIDPEYMVYMFKYDSTHGRYKG-TVEH 59
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
           K+ + L+     + VF  + P+EIPW+  G  YVVE+TGV+                VI+
Sbjct: 60  KNGR-LVVDNLEINVFQXKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIV 118
Query: 124 SAPSKDAPMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           +APS DAPM V+GVNE +Y P  + +VSNAS TTNCLAPLAKVIH++FGIVEGLMTTVH+
Sbjct: 119 TAPSPDAPMLVMGVNEKDYNPGSMTVVSNASXTTNCLAPLAKVIHERFGIVEGLMTTVHA 178
Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
            TATQKTVDGPS KDWRGGR A  NIIPSSTGAAKAVGKV+P LNGKLTGMAFRVPT +V
Sbjct: 179 YTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238
Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
           SVVDLT RL + ASY  IK A+K
Sbjct: 239 SVVDLTCRLAQPASYTAIKEAVK 261

>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Glyceraldehyde-3-Phosphate Dehydrogenase Length = 354

Iteration: 1
 Score =  320 bits (821), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 165/265 (62%), Positives = 194/265 (73%), Gaps = 8/265 (3%)
Query: 6   IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH-ELKVK 64
           +GINGFGRIGRLV R  ++R+D+ +VA+NDPF+  +YM Y+ KYDSVHG +    E+  K
Sbjct: 20  LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 79
Query: 65  DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
           D   L    K V VF  ++P EIPW  +GA+ V ESTGVFT               VIIS
Sbjct: 80  D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 136
Query: 125 APSKD-APMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           AP KD  PM+V+GVN  EY P + N++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 137 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 196
Query: 183 ITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           +TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+PALNGKLTGMA RVPT 
Sbjct: 197 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 256
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLT +L K AS +EI  A+K
Sbjct: 257 DVSVVDLTCKLAKPASIEEIYQAVK 281

>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate Dehydrogenase From Cryptosporidium Parvum Length = 359

Iteration: 1
 Score =  320 bits (820), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 165/265 (62%), Positives = 194/265 (73%), Gaps = 8/265 (3%)
Query: 6   IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH-ELKVK 64
           +GINGFGRIGRLV R  ++R+D+ +VA+NDPF+  +YM Y+ KYDSVHG +    E+  K
Sbjct: 25  LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 84
Query: 65  DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
           D   L    K V VF  ++P EIPW  +GA+ V ESTGVFT               VIIS
Sbjct: 85  D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 125 APSKD-APMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           AP KD  PM+V+GVN  EY P + N++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 201
Query: 183 ITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           +TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+PALNGKLTGMA RVPT 
Sbjct: 202 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 261
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLT +L K AS +EI  A+K
Sbjct: 262 DVSVVDLTCKLAKPASIEEIYQAVK 286

>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde 3-Phosphate Dehydrogenase From Cryptosporidium Parvum Length = 359

Iteration: 1
 Score =  316 bits (809), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 164/265 (61%), Positives = 193/265 (72%), Gaps = 8/265 (3%)
Query: 6   IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH-ELKVK 64
           +GINGFGRIGRLV R  ++R+D+ +VA+NDPF+  +YM Y+ KYDSVHG +    E+  K
Sbjct: 25  LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 84
Query: 65  DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
           D   L    K V VF  ++P EIPW  +GA+ V ESTGVFT               VIIS
Sbjct: 85  D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 125 APSKD-APMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           AP KD  PM+V+GVN  EY P + N++SNAS TTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASSTTNCLAPLAKIINDKFGIVEGLMTTVHS 201
Query: 183 ITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           +TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+PALNGKLTGMA RVPT 
Sbjct: 202 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 261
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLT +L K AS +EI  A+K
Sbjct: 262 DVSVVDLTCKLAKPASIEEIYQAVK 286

>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate Dehydrogenases: Implication For Nad Binding And Cooperativity Length = 330

Iteration: 1
 Score =  313 bits (802), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 161/263 (61%), Positives = 196/263 (74%), Gaps = 5/263 (1%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEV 59
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
           KD   ++ G+K + V   R+P  + W E G + V E+TG+F                V++
Sbjct: 60  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 124 SAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           + PSKD  PMFV G N  +Y  + +IVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177
Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 237
Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
           SVVDLTVRLEK A+Y++IKAA+K
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVK 260

>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of Glyceraldehyde 3- Phosphate Dehydrogenase From Escherichia Coli Length = 331

Iteration: 1
 Score =  313 bits (802), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 161/263 (61%), Positives = 196/263 (74%), Gaps = 5/263 (1%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 3   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEV 60
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
           KD   ++ G+K + V   R+P  + W E G + V E+TG+F                V++
Sbjct: 61  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 124 SAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           + PSKD  PMFV G N  +Y  + +IVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 178
Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +V
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238
Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
           SVVDLTVRLEK A+Y++IKAA+K
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVK 261

>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate Dehydrogenases: Implication For Nad Binding And Cooperativity Length = 330

Iteration: 1
 Score =  313 bits (801), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 161/263 (61%), Positives = 196/263 (74%), Gaps = 5/263 (1%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEV 59
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
           KD   ++ G+K + V   R+P  + W E G + V E+TG+F                V++
Sbjct: 60  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 124 SAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           + PSKD  PMFV G N  +Y  + +IVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177
Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 237
Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
           SVVDLTVRLEK A+Y++IKAA+K
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVK 260

>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Toxoplasma Gondii Length = 361

Iteration: 1
 Score =  310 bits (793), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 163/265 (61%), Positives = 196/265 (73%), Gaps = 5/265 (1%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
            K+GINGFGRIGRLV R  ++R DVE++A+NDPF++ DYM Y+ +YDSVHG +   E+  
Sbjct: 24  CKLGINGFGRIGRLVFRAAMERGDVEVLAINDPFMSLDYMVYLLRYDSVHGHYPG-EVSH 82
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
           KD K L+ G K VTVF  + P  IPW + G  Y+ ESTG+F                VI+
Sbjct: 83  KDGK-LIVGGKAVTVFNEKEPTAIPWGQAGVHYICESTGIFLTKEKAQAHLTNGAKKVIM 141
Query: 124 SAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           SAP KD  PMFV+GVN  +YK    IVSNASCTTNCLAPLAK++HDKFGIVEGLMTTVH+
Sbjct: 142 SAPPKDDTPMFVMGVNNDQYKSSDVIVSNASCTTNCLAPLAKIVHDKFGIVEGLMTTVHA 201
Query: 183 ITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           +TA Q TVDGPS   KDWR GR+A  NIIP+STGAAKAVGK++P+LNGKLTGMAFRVP  
Sbjct: 202 MTANQLTVDGPSKGGKDWRAGRSAGVNIIPASTGAAKAVGKIIPSLNGKLTGMAFRVPVP 261
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLT +L K A Y++I AA+K
Sbjct: 262 DVSVVDLTCKLAKPAKYEDIVAAVK 286

>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer Length = 331

Iteration: 1
 Score =  308 bits (790), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 160/263 (60%), Positives = 195/263 (74%), Gaps = 5/263 (1%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 3   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEV 60
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
           KD   ++ G+K + V   R+P  + W E G + V E+TG+F                V++
Sbjct: 61  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 124 SAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           + PSKD  PMFV G N  +Y  + +IVSNAS TTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASXTTNCLAPLAKVINDNFGIIEGLMTTVHA 178
Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +V
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238
Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
           SVVDLTVRLEK A+Y++IKAA+K
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVK 261

>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Plasmodium Falciparum Length = 337

Iteration: 1
 Score =  304 bits (778), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 156/268 (58%), Positives = 187/268 (69%), Gaps = 5/268 (1%)
Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           M   K+GINGFGRIGRLV R    R D+E+VA+NDPF+  +++ Y+ KYDSVHGQ+    
Sbjct: 1   MAVTKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEV 60
Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
                D  LL GEK V+VF  ++P +IPW +   + V ESTGVF                
Sbjct: 61  THA--DGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKK 118
Query: 121 VIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
           VI+SAP KD  P++V+G+N H+Y  +  IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTT
Sbjct: 119 VIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTT 178
Query: 180 VHSITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
           VH+ TA Q  VDGPS   KDWR GR A  NIIP+STGAAKAVGKVLP LNGKLTG+AFRV
Sbjct: 179 VHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRV 238
Query: 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           P   VSVVDL  RL+K A Y+E+   IK
Sbjct: 239 PIGTVSVVDLVCRLQKPAKYEEVALEIK 266

>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Plasmodium Falciparum At 2.25 Angstrom Resolution Reveals Intriguing Extra Electron Density In The Active Site Length = 345

Iteration: 1
 Score =  303 bits (775), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 155/264 (58%), Positives = 186/264 (70%), Gaps = 5/264 (1%)
Query: 5   KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
           K+GINGFGRIGRLV R    R D+E+VA+NDPF+  +++ Y+ KYDSVHGQ+        
Sbjct: 13  KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHA- 71
Query: 65  DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
            D  LL GEK V+VF  ++P +IPW +   + V ESTGVF                VI+S
Sbjct: 72  -DGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 130
Query: 125 APSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
           AP KD  P++V+G+N H+Y  +  IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH+ 
Sbjct: 131 APPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAS 190
Query: 184 TATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           TA Q  VDGPS   KDWR GR A  NIIP+STGAAKAVGKVLP LNGKLTG+AFRVP   
Sbjct: 191 TANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGT 250
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
           VSVVDL  RL+K A Y+E+   IK
Sbjct: 251 VSVVDLVCRLQKPAKYEEVALEIK 274

>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate Dehydrogenase From Escherichia Coli: Direct Evidence For Substrate Binding And Cofactor-Induced Conformational Changes Length = 330

Iteration: 1
 Score =  282 bits (722), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/263 (59%), Positives = 190/263 (72%), Gaps = 5/263 (1%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DY  Y  KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYXAYXLKYDSTHGRF-DGTVEV 59
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
           KD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+ 
Sbjct: 60  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVX 118
Query: 124 SAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           + PSKD  P FV G N  +Y  + +IVSNASCTTNCLAPLAKVI+D FGI+EGL TTVH+
Sbjct: 119 TGPSKDNTPXFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLXTTVHA 177
Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTG AFRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGXAFRVPTPNV 237
Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
           SVVDLTVRLEK A+Y++IKAA+K
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVK 260

>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Brucei Determined From Laue Data Length = 359

Iteration: 1
 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 150/276 (54%), Positives = 184/276 (66%), Gaps = 14/276 (5%)
Query: 4   VKIGINGFGRIGRLVARVI----LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
           +K+GINGFGRIGR+V + +    L  +++++VAV D      Y  Y  KYDSVHG++KH 
Sbjct: 3   IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHS 62
Query: 60  ELK-------VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 112
                      KDD  ++ G + + V   RNP ++PW + G EYV+ESTG+FT       
Sbjct: 63  VSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEG 122
Query: 113 XXXXXXXXVIISAP-SKDAPMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKV-IHDK 169
                   V+ISAP S  A  FV+GVN + Y P E ++VSNASCTTNCLAPL  V + + 
Sbjct: 123 HLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEG 182
Query: 170 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 229
           FGI  GLMTTVHS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 183 FGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGK 242
Query: 230 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           LTGMAFRVPT DVSVVDLT    +D S  EI AA+K
Sbjct: 243 LTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALK 278

>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Cruzi Complexed With Chalepin, A Coumarin Derivative Inhibitor Length = 359

Iteration: 1
 Score =  270 bits (690), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 144/276 (52%), Positives = 184/276 (66%), Gaps = 14/276 (5%)
Query: 4   VKIGINGFGRIGRLVARVI----LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
           +K+GINGFGRIGR+V + +    L   ++++VAV D     +Y  Y  +YD+VHG++K+ 
Sbjct: 3   IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 60  ELK-------VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 112
                      KDD  ++ G + + V   RNP ++PW + G EYV+ESTG+FT       
Sbjct: 63  VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 113 XXXXXXXXVIISAP-SKDAPMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKV-IHDK 169
                   V+ISAP S  A   V+GVN HEY P E ++VSNASCTTNCLAP+  V + + 
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEG 182
Query: 170 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 229
           FG+  GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 183 FGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGK 242
Query: 230 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           LTGM+FRVPT DVSVVDLT    +D S  EI AA+K
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALK 278

>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Cruzi In Complex With The Irreversible Iodoacetate Inhibitor Length = 359

Iteration: 1
 Score =  265 bits (678), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/276 (51%), Positives = 183/276 (66%), Gaps = 14/276 (5%)
Query: 4   VKIGINGFGRIGRLVARVI----LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
           +K+GINGFGRIGR+V + +    L   ++++VAV D     +Y  Y  +YD+VHG++K+ 
Sbjct: 3   IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 60  ELK-------VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 112
                      KDD  ++ G + + V   RNP ++PW + G EYV+ESTG+FT       
Sbjct: 63  VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 113 XXXXXXXXVIISAP-SKDAPMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKV-IHDK 169
                   V+ISAP S  A   V+GVN HEY P E ++VSNAS TTNCLAP+  V + + 
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASXTTNCLAPIVHVLVKEG 182
Query: 170 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 229
           FG+  GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 183 FGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGK 242
Query: 230 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           LTGM+FRVPT DVSVVDLT    +D S  EI AA+K
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALK 278

>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A Monoclinic Crystal Form Length = 360

Iteration: 1
 Score =  263 bits (672), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 144/276 (52%), Positives = 182/276 (65%), Gaps = 14/276 (5%)
Query: 4   VKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
           +K+GINGFGRIGR+V + I  +     ++++VAV D     +Y  Y  K+D+VHG+ K+ 
Sbjct: 3   IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 60  ELKVKD-------DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 112
              VK        D  ++ G +   V   RNP ++PW + G +YV+ESTG+FT       
Sbjct: 63  VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 113 XXXXXXXXVIISAP-SKDAPMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKVI-HDK 169
                   V+ISAP S  A   V+GVN+HEY P   ++VSNASCTTNCLAP+  V+  + 
Sbjct: 123 HIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKEN 182
Query: 170 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 229
           FGI  GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 183 FGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGK 242
Query: 230 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           LTGM+FRVPT DVSVVDLT R  +D S  EI  AIK
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIK 278

>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Leishmania Mexicana: Implications For Structure-Based Drug Design And A New Position For The Inorganic Phosphate Binding Site Length = 358

Iteration: 1
 Score =  263 bits (671), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 144/276 (52%), Positives = 182/276 (65%), Gaps = 14/276 (5%)
Query: 4   VKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
           +K+GINGFGRIGR+V + I  +     ++++VAV D     +Y  Y  K+D+VHG+ K+ 
Sbjct: 3   IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 60  ELKVKD-------DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 112
              VK        D  ++ G +   V   RNP ++PW + G +YV+ESTG+FT       
Sbjct: 63  VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 113 XXXXXXXXVIISAP-SKDAPMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKVI-HDK 169
                   V+ISAP S  A   V+GVN+HEY P   ++VSNASCTTNCLAP+  V+  + 
Sbjct: 123 HIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKEN 182
Query: 170 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 229
           FGI  GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 183 FGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGK 242
Query: 230 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           LTGM+FRVPT DVSVVDLT R  +D S  EI  AIK
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIK 278

>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Stearothermophilus At 1.8 Angstroms Resolution Length = 334

Iteration: 1
 Score =  248 bits (633), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/264 (51%), Positives = 178/264 (67%), Gaps = 6/264 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+GINGFGRIGR V R  L+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
             +  ++ G K + V   R+PE + W E G + VVESTG FT               VII
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 124 SAPSKDAPM-FVVGVNEHEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           SAP+K+  +  V+GVN+ +Y P+ + ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           S T  Q+ +D P  KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GMA RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
           VSVVDL   LEK+ + +E+ AA+K
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALK 261

>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu 33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188 Replaced By Ser Complexed With Nad+ Length = 334

Iteration: 1
 Score =  246 bits (629), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 135/264 (51%), Positives = 178/264 (67%), Gaps = 6/264 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+GINGFGRIGR V R  L+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDTG-GANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
             +  ++ G K + V   R+PE + W E G + VVESTG FT               VII
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 124 SAPSKDAPM-FVVGVNEHEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           SAP+K+  +  V+GVN+ +Y P+ + ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           S T  Q+ +D  S KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GMA RVPT +
Sbjct: 179 SYTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
           VSVVDL   LEK+ + +E+ AA+K
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALK 261

>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp 32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188 Replaced By Ser Complexed With Nad+ Length = 334

Iteration: 1
 Score =  245 bits (625), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/264 (50%), Positives = 177/264 (67%), Gaps = 6/264 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+GINGFGRIGR V R  L+  D+E+VAVN      + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVNG-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
             +  ++ G K + V   R+PE + W E G + VVESTG FT               VII
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 124 SAPSKDAPM-FVVGVNEHEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           SAP+K+  +  V+GVN+ +Y P+ + ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           S T  Q+ +D  S KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GMA RVPT +
Sbjct: 179 SYTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
           VSVVDL   LEK+ + +E+ AA+K
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALK 261

>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys 149 Replaced By Ala Complexed With Nad+ Length = 334

Iteration: 1
 Score =  244 bits (623), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 134/264 (50%), Positives = 177/264 (67%), Gaps = 6/264 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+GINGFGRIGR V R  L+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
             +  ++ G K + V   R+PE + W E G + VVESTG FT               VII
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 124 SAPSKDAPM-FVVGVNEHEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           SAP+K+  +  V+GVN+ +Y P+ + ++SNAS TTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           S T  Q+ +D P  KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GMA RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
           VSVVDL   LEK+ + +E+ AA+K
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALK 261

>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys 149 Replaced By Ser Complexed With Nad+ Length = 334

Iteration: 1
 Score =  244 bits (623), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 134/264 (50%), Positives = 177/264 (67%), Gaps = 6/264 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+GINGFGRIGR V R  L+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
             +  ++ G K + V   R+PE + W E G + VVESTG FT               VII
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 124 SAPSKDAPM-FVVGVNEHEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           SAP+K+  +  V+GVN+ +Y P+ + ++SNAS TTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           S T  Q+ +D P  KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GMA RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
           VSVVDL   LEK+ + +E+ AA+K
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALK 261

>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate Dehydrogenase From The Hyperthermophilic Bacterium Thermotoga Maritima At 2.5 Angstroms Resolution Length = 332

Iteration: 1
 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/265 (47%), Positives = 175/265 (66%), Gaps = 9/265 (3%)
Query: 5   KIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           ++ INGFGRIGRLV R+I +R   D+E+VA+ND    T  + ++ KYDSVH ++     K
Sbjct: 2   RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG---K 57
Query: 63  VK-DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 121
           V+  + +L+   K + VF   +P ++PW + G ++V+ESTGVF                V
Sbjct: 58  VEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKV 117
Query: 122 IISAPSKDAPM-FVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           II+AP+K   +  V+G NE + KPE  I+S ASCTTN +AP+ KV+H+KFGIV G++TTV
Sbjct: 118 IITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTV 177
Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HS T  Q+ +D P  KD R  RAA+ NIIP++TGAAKAV  V+P + GKL GMA RVPT 
Sbjct: 178 HSYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTP 236
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           D S+ DLTV +EK+ + +E+ A +K
Sbjct: 237 DGSITDLTVLVEKETTVEEVNAVMK 261

>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex Aeolicus Vf5 Length = 342

Iteration: 1
 Score =  226 bits (576), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/255 (47%), Positives = 170/255 (66%), Gaps = 6/255 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGR   R    R+++E+VA+ND      ++ ++ KYDSVHG +K   ++ 
Sbjct: 3   IKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFKG-SVEA 60
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
           KDD  ++ G K + VF  ++P +IPW + G + V+E+TGVF                VII
Sbjct: 61  KDDSIVVDG-KEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119
Query: 124 SAPSKDAPMFVV-GVNEHEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           +AP+K+  + VV GVNE +Y P E NI+SNASCTTNCLAP  KV+++ FG+ +G M TVH
Sbjct: 120 TAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVH 179
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           + T  Q+ +D P  KD+R  RAA+ NI+P++TGAAKA+G+V+P L GKL G A RVP  D
Sbjct: 180 AYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPD 238
Query: 242 VSVVDLTVRLEKDAS 256
            S++DLTV + K  S
Sbjct: 239 GSLIDLTVVVNKAPS 253

>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate Dehydrogenase From Brucella Melitensis Length = 335

Iteration: 1
 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 123/267 (46%), Positives = 172/267 (64%), Gaps = 11/267 (4%)
Query: 4   VKIGINGFGRIGRLVARVILQ--RDDVELVAVND--PFITTDYMTYMFKYDSVHGQWKHH 59
           V++ INGFGRIGR + R I++  R D+++VA+ND  P  T     ++ +YDSVHG++   
Sbjct: 3   VRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETN---AHLLRYDSVHGRFPK- 58
Query: 60  ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXX 119
           E++V  D T+  G  P+ V  VRNP E+PW E   +  +E TG+FT              
Sbjct: 59  EVEVAGD-TIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAK 117
Query: 120 XVIISAPSKDAPMFVV-GVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178
            VI+SAP+  A + VV GVN  +   +  ++SNASCTTNCLAP+A+V++D  GI +G MT
Sbjct: 118 RVIVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMT 177
Query: 179 TVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 238
           T+HS T  Q T+D    KD    RAA+ ++IP+STGAAKAVG VLP L GKL G+A RVP
Sbjct: 178 TIHSYTGDQPTLD-TMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVP 236
Query: 239 TVDVSVVDLTVRLEKDASYDEIKAAIK 265
           T +VSVVDLT   +++ + +E+  AI+
Sbjct: 237 TPNVSVVDLTFIAKRETTVEEVNNAIR 263

>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Borrelia Burgdorferi Length = 356

Iteration: 1
 Score =  216 bits (551), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 120/271 (44%), Positives = 175/271 (64%), Gaps = 12/271 (4%)
Query: 2   GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
           G +K+ INGFGRIGR V ++  +R  +++VA+ND       + ++ KYDS  G + + ++
Sbjct: 20  GSMKLAINGFGRIGRNVFKIAFERG-IDIVAIND-LTDPKTLAHLLKYDSTFGVY-NKKV 76
Query: 62  KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXX-----XXXXX 116
           + +D   ++ G + + +   R+P+ +PWA+ G + V+ESTGVF+                
Sbjct: 77  ESRDGAIVVDG-REIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHA 135
Query: 117 XXXXVIISAPSKDA-PMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEG 175
               VI++ P+KD     V+GVN+H+   +L  VSNASCTTNCLAPLAKV+H+ FGI +G
Sbjct: 136 GAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQG 195
Query: 176 LMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAF 235
           LMTTVH+ T  Q+ +D P S D R  RAA+ +IIP+STGAAKAVG VLP L GKL G + 
Sbjct: 196 LMTTVHAYTNDQRILDLPHS-DLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSM 254
Query: 236 RVPTVDVSVVDLTVRL-EKDASYDEIKAAIK 265
           RVP    S+VDLTV+L +KD + +EI + ++
Sbjct: 255 RVPVPTGSIVDLTVQLKKKDVTKEEINSVLR 285

>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase, Complexed With Nadp Length = 368

Iteration: 1
 Score =  207 bits (527), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 126/256 (49%), Positives = 166/256 (64%), Gaps = 8/256 (3%)
Query: 3   KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           K+K+ INGFGRIGR   R    R D  +++V VND        T++ KYDS+ G +K  +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKSATHLLKYDSILGTFKA-D 58
Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
           +K+ D++T     KP+ V   R+P ++PWAE G + V+E TGVF                
Sbjct: 59  VKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 118
Query: 121 VIISAPSK--DAPMFVVGVNEHEYKPEL-NIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
           VII+AP+K  D P +VVGVNE +Y  ++ NI+SNASCTTNCLAP  KV+ ++ GIV+G M
Sbjct: 119 VIITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTM 178
Query: 178 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
           TT HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  VLP L GKL G+A RV
Sbjct: 179 TTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV 237
Query: 238 PTVDVSVVDLTVRLEK 253
           PT +VSVVDL V +EK
Sbjct: 238 PTPNVSVVDLVVNIEK 253

>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate Dehydrogenase From Bartonella Henselae With Bound Nad Length = 356

Iteration: 1
 Score =  206 bits (525), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 114/266 (42%), Positives = 163/266 (61%), Gaps = 7/266 (2%)
Query: 3   KVKIGINGFGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
            V++ INGFGRIGR + R I++  R D+E+VA+ND   + +   ++ +YDSVHG +    
Sbjct: 23  SVRVAINGFGRIGRNILRAIIESGRQDIEVVALND-LGSVETNAHLLRYDSVHGCFPGTV 81
Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
             V D   +  G   + VF  R+P ++PW     +  +E TG+FT               
Sbjct: 82  QVVGD--AIDIGSSLIKVFAERDPAQLPWKALDIDIALECTGIFTARDKASAHLDAGAKR 139
Query: 121 VIISAPSKDAPMFVV-GVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
           V++SAPS+ A + VV GVN      E +++SNASCTTNCLAP+A+V+H+  GI +G MTT
Sbjct: 140 VLVSAPSEGADLTVVYGVNHQFLSKEHHVISNASCTTNCLAPVAQVLHNTVGIEKGFMTT 199
Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
           +HS T  Q  +D    +D    RAA+ ++IP+STGAAKAVG VLP L G L G++ RVPT
Sbjct: 200 IHSYTGDQPVLD-TMHRDLYRARAAALSMIPTSTGAAKAVGLVLPELKGLLDGVSIRVPT 258
Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
            +VSVVDLT   ++  + +EI  AI+
Sbjct: 259 PNVSVVDLTFTAKRSTTIEEINTAIR 284

>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Anthracis Str. Sterne Length = 345

Iteration: 1
 Score =  203 bits (517), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 117/263 (44%), Positives = 167/263 (63%), Gaps = 6/263 (2%)
Query: 5   KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
           ++ INGFGRIGR+V R  ++    E+VA+N  +  ++ + ++ KYD+VHG++       +
Sbjct: 6   RVAINGFGRIGRMVFRQAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKFDGTVEAFE 64
Query: 65  DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
           D   LL   K + +   R+P+E+PW + G E V+E+TG F                VI++
Sbjct: 65  DH--LLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILT 122
Query: 125 APSKDAPM-FVVGVNEHEYK-PELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           AP K+  +  VVGVNE +    +  ++SNASCTTNCLAP+ KV+ ++FGI  GLMTTVH+
Sbjct: 123 APGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHA 182
Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
            T  QK +D P  KD R  RA   +IIP++TGAAKA+ KVLP LNGKL GMA RVPT +V
Sbjct: 183 YTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNV 241
Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
           S+VDL V +++D + + I  A K
Sbjct: 242 SLVDLVVDVKRDVTVEAINDAFK 264

>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252 At 2.5 Angstrom Resolution Length = 336

Iteration: 1
 Score =  200 bits (509), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 117/265 (44%), Positives = 161/265 (60%), Gaps = 6/265 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 60
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
            D    + G K V  F   +  ++PW +   + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 124 SAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           SAP+  D    V   N  E      +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
            S+ +LTV LEK D + +++  A+K
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMK 264

>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal Space Group Length = 344

Iteration: 1
 Score =  200 bits (509), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 117/265 (44%), Positives = 161/265 (60%), Gaps = 6/265 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 11  VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 68
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
            D    + G K V  F   +  ++PW +   + V+E TG +T               V+I
Sbjct: 69  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 127
Query: 124 SAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           SAP+  D    V   N  E      +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 128 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 187
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP   
Sbjct: 188 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 247
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
            S+ +LTV LEK D + +++  A+K
Sbjct: 248 GSLTELTVVLEKQDVTVEQVNEAMK 272

>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin Resistant Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution Length = 338

Iteration: 1
 Score =  200 bits (509), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 117/265 (44%), Positives = 161/265 (60%), Gaps = 6/265 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 5   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 62
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
            D    + G K V  F   +  ++PW +   + V+E TG +T               V+I
Sbjct: 63  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121
Query: 124 SAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           SAP+  D    V   N  E      +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 122 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 181
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP   
Sbjct: 182 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 241
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
            S+ +LTV LEK D + +++  A+K
Sbjct: 242 GSLTELTVVLEKQDVTVEQVNEAMK 266

>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicllin Resistant Staphylococcus Aureus (Mrsa252) Length = 339

Iteration: 1
 Score =  200 bits (509), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 117/265 (44%), Positives = 161/265 (60%), Gaps = 6/265 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 6   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 63
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
            D    + G K V  F   +  ++PW +   + V+E TG +T               V+I
Sbjct: 64  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 122
Query: 124 SAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           SAP+  D    V   N  E      +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 123 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 182
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP   
Sbjct: 183 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 242
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
            S+ +LTV LEK D + +++  A+K
Sbjct: 243 GSLTELTVVLEKQDVTVEQVNEAMK 267

>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform, Complexed With Nadp Length = 337

Iteration: 1
 Score =  199 bits (506), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/266 (45%), Positives = 159/266 (59%), Gaps = 6/266 (2%)
Query: 3   KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDAG-GVKQASHLLKYDSILGTF-DAD 58
Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
           +K   D  +    K + V   RNP  +PW + G + V+E TGVF                
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 121 VIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
           V+I+AP K D P +VVGVNE  Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
            HS T  Q+ +D  S +D R  RAA  NI+P+STGAAKAV  VLP L GKL G+A RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
            +VSVVDL V++ K    +E+ AA +
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFR 263

>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By The Crystal Structure Of A4 Isoform Complexed With Nad Length = 337

Iteration: 1
 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/266 (45%), Positives = 159/266 (59%), Gaps = 6/266 (2%)
Query: 3   KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTF-DAD 58
Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
           +K   D  +    K + V   RNP  +PW + G + V+E TGVF                
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 121 VIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
           V+I+AP K D P +VVGVNE  Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
            HS T  Q+ +D  S +D R  RAA  NI+P+STGAAKAV  VLP L GKL G+A RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
            +VSVVDL V++ K    +E+ AA +
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFR 263

>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase, Complexed With Nadp Length = 365

Iteration: 1
 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/266 (45%), Positives = 159/266 (59%), Gaps = 6/266 (2%)
Query: 3   KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTF-DAD 58
Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
           +K   D  +    K + V   RNP  +PW + G + V+E TGVF                
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 121 VIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
           V+I+AP K D P +VVGVNE  Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
            HS T  Q+ +D  S +D R  RAA  NI+P+STGAAKAV  VLP L GKL G+A RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
            +VSVVDL V++ K    +E+ AA +
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFR 263

>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform, Complexed With Nadp Length = 337

Iteration: 1
 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/266 (45%), Positives = 159/266 (59%), Gaps = 6/266 (2%)
Query: 3   KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTF-DAD 58
Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
           +K   D  +    K + V   RNP  +PW + G + V+E TGVF                
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 121 VIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
           V+I+AP K D P +VVGVNE  Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
            HS T  Q+ +D  + +D R  RAA  NI+P+STGAAKAV  VLP L GKL G+A RVPT
Sbjct: 179 THSYTGDQRLLDA-AHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
            +VSVVDL V++ K    +E+ AA +
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFR 263

>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase, Type I From Burkholderia Pseudomallei Length = 344

Iteration: 1
 Score =  197 bits (502), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/267 (42%), Positives = 160/267 (59%), Gaps = 9/267 (3%)
Query: 4   VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           +++ ING+GRIGR   R   +   + D+E+VA+ND         ++ +YD+ HG++   E
Sbjct: 11  IRVAINGYGRIGRNTLRAFYENGKKHDLEIVAIND-LGDAKTNAHLTQYDTAHGKFPG-E 68
Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
           + V  D  ++ G++ + V   RNP E+PW E G + V+E TG FT               
Sbjct: 69  VSVDGDYLVVNGDR-IRVLANRNPAELPWGELGVDVVMECTGFFTSKEKASAHLKGGAKK 127
Query: 121 VIISAPS-KDAPMFVV-GVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178
           VIISAP  KD    +V GVN    K E  ++SNASCTTNCLAPL K ++DK G+  GLMT
Sbjct: 128 VIISAPGGKDVDATIVYGVNHDVLKAEHTVISNASCTTNCLAPLVKPLNDKIGLETGLMT 187
Query: 179 TVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 238
           T+H+ T  Q   D    +D R  R+A+ + IP+ TGAA AVG VLP LNGKL G A RVP
Sbjct: 188 TIHAYTNDQVLTD-VYHEDLRRARSATHSQIPTKTGAAAAVGLVLPELNGKLDGYAIRVP 246
Query: 239 TVDVSVVDLTVRLEKDASYDEIKAAIK 265
           T++VS+VDL+   ++D +  E+ A +K
Sbjct: 247 TINVSIVDLSFIAKRDTTAAEVNAIMK 273

>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1) From Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.0 Angstrom Resolution. Length = 336

Iteration: 1
 Score =  197 bits (501), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/265 (43%), Positives = 161/265 (60%), Gaps = 6/265 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 60
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
            D    + G K V  F   +  ++PW +   + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 124 SAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           SAP+  D    V   N  E      +VS ASCTTN LAP+AKV++D FG+VEGLMTT+++
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTINA 179
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
            S+ +LTV LEK D + +++  A+K
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMK 264

>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of Spinach Chloroplast Glyceraldehyde-3-Phosphate Dehydrogenase Complexed With Nadp Length = 335

Iteration: 1
 Score =  197 bits (501), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/265 (45%), Positives = 160/265 (60%), Gaps = 6/265 (2%)
Query: 3   KVKIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
           K+K+ INGFGRIGR   R    +D  +++V +ND        +++ KYDS+ G +   ++
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-DV 58
Query: 62  KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 121
           K   D  +  G K + V   RNP  +PW + G + V+E TGVF                V
Sbjct: 59  KTAGDSAISVG-KVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKV 117
Query: 122 IISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           +I+AP K D P +VVGVNE  Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT 
Sbjct: 118 LITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 177
Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           HS T  Q+ +D  S +D R  RAA  NI+P+STGAAKAV  VLP L GKL G+A RVPT 
Sbjct: 178 HSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTP 236
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           +VSVVDL V++ K    +E+ AA +
Sbjct: 237 NVSVVDLVVQVSKKTFAEEVNAAFR 261

>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The Molecular Structure Of Thermus Aquaticus D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5 Angstroms Resolution Length = 331

Iteration: 1
 Score =  197 bits (501), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 118/264 (44%), Positives = 164/264 (62%), Gaps = 7/264 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGR V R++  R  VE+  +ND       + ++ KYDS++ ++       
Sbjct: 1   MKVGINGFGRIGRQVFRILHSRG-VEVALIND-LTDNKTLAHLLKYDSIYHRFPGE--VA 56
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
            DD+ L    K +    V++P+EIPWAE G   V+ESTGVFT               VII
Sbjct: 57  YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 124 SAPSKDAPM-FVVGVNEHEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           +AP+K   +  V+GVN   Y P  + I+SNASCTTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVH 176
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKA   VLP+L G+  GMA RVPT  
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
            S+ D+T  L+++ + +E+ AA+K
Sbjct: 236 GSISDITALLKREVTAEEVNAALK 259

>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) Complexed With Nad From Staphylococcus Aureus Mrsa252 At 2.2 Angstrom Resolution Length = 336

Iteration: 1
 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/265 (43%), Positives = 160/265 (60%), Gaps = 6/265 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 60
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
            D    + G K V  F   +  ++PW +   + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 124 SAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           SAP+  D    V   N  E      +VS AS TTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
            S+ +LTV LEK D + +++  A+K
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMK 264

>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde 3-Phosphate Dehydrogenase 1 From Methicillin Resistant Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom Resolution Length = 336

Iteration: 1
 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 116/265 (43%), Positives = 160/265 (60%), Gaps = 6/265 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 60
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
            D    + G K V  F   +  ++PW +   + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 124 SAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           SAP+  D    V   N  E      +VS AS TTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASGTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
            S+ +LTV LEK D + +++  A+K
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMK 264

>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate Dehydrogenase From Thermus Thermophilus Hb8 Length = 331

Iteration: 1
 Score =  194 bits (492), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 117/264 (44%), Positives = 165/264 (62%), Gaps = 7/264 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGR V R++ +R  VE+  +ND       + ++ KYDS +G++       
Sbjct: 1   MKVGINGFGRIGRQVFRILHERG-VEVALIND-LTDNKTLAHLLKYDSTYGRFPG--AVG 56
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
            D++ L    K +    +++P EIPW + G   VVESTGVFT               VII
Sbjct: 57  YDEENLYVDGKAIRATAIKDPREIPWKQAGVGVVVESTGVFTDGEKARAHLEAGAKKVII 116
Query: 124 SAPSKDAPMFVV-GVNEHEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           +AP+K+  + VV GVN  +Y P + +I+SNASCTTN LAP+ KV+   FG+ + LMTTVH
Sbjct: 117 TAPAKNEDITVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKVLEKAFGVEKALMTTVH 176
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKA   VLP+L G+  GMA RVPT  
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAALNIIPTTTGAAKATALVLPSLKGRFDGMALRVPTPT 235
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
            S+ D+T  L+++ + +E+ AA+K
Sbjct: 236 GSISDITALLKREVTAEEVNAALK 259

>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2 Angstrom Resolution Length = 336

Iteration: 1
 Score =  193 bits (491), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 115/265 (43%), Positives = 160/265 (60%), Gaps = 6/265 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 60
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
            D    + G K V  F   +  ++PW +   + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 124 SAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           SAP+  D    V   N  E      +VS AS TTN LAP+AKV++D FG+VEGLMTT+++
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTINA 179
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
            S+ +LTV LEK D + +++  A+K
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMK 264

>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's Loop Motion In Catalysis Length = 331

Iteration: 1
 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/264 (44%), Positives = 163/264 (61%), Gaps = 7/264 (2%)
Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGR V R++  R  VE+  +ND       + ++ KYDS++ ++       
Sbjct: 1   MKVGINGFGRIGRQVFRILHSRG-VEVALIND-LTDNKTLAHLLKYDSIYHRFPGE--VA 56
Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
            DD+ L    K +    V++P+EIPWAE G   V+ESTGVFT               VII
Sbjct: 57  YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 124 SAPSKDAPM-FVVGVNEHEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           +AP+K   +  V+GVN   Y P  + I+SNAS TTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASXTTNSLAPVMKVLEEAFGVEKALMTTVH 176
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKA   VLP+L G+  GMA RVPT  
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
            S+ D+T  L+++ + +E+ AA+K
Sbjct: 236 GSISDITALLKREVTAEEVNAALK 259

>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese Length = 339

Iteration: 1
 Score =  184 bits (466), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 108/243 (44%), Positives = 151/243 (62%), Gaps = 13/243 (5%)
Query: 4   VKIGINGFGRIGRLVARVIL--QRDDVELVAVNDPFITTDYMT--YMFKYDSVHGQWKHH 59
           +++ INGFGRIGR   R     Q  D+E+VA+N+   T+D  T  ++ +YDSV G++   
Sbjct: 3   IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN---TSDARTAAHLLEYDSVLGRFNAD 59
Query: 60  ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXX 119
                D+ ++    K + +   RNP  +PW E   + V+ESTGVF               
Sbjct: 60  --ISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAK 117
Query: 120 XVIISAPSKDAPM--FVVGVNEHEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176
            V+I+AP K   +  +V+GVN+ EY+ E   ++SNASCTTNCLAP+AKV+HD FGI++G 
Sbjct: 118 KVLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGT 177
Query: 177 MTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFR 236
           MTT HS T  Q+ +D  S +D R  RAA+ NI+P++TGAAKAV  V+P L GKL G+A R
Sbjct: 178 MTTTHSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALR 236
Query: 237 VPT 239
           VPT
Sbjct: 237 VPT 239

>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3- Phosphate Dehydrogenase From Synechococcus Sp. Complexed With Nadp+ Length = 380

Iteration: 1
 Score =  183 bits (465), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 108/243 (44%), Positives = 151/243 (62%), Gaps = 13/243 (5%)
Query: 4   VKIGINGFGRIGRLVARVIL--QRDDVELVAVNDPFITTDYMT--YMFKYDSVHGQWKHH 59
           +++ INGFGRIGR   R     Q  D+E+VA+N+   T+D  T  ++ +YDSV G++   
Sbjct: 3   IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN---TSDARTAAHLLEYDSVLGRFNAD 59
Query: 60  ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXX 119
                D+ ++    K + +   RNP  +PW E   + V+ESTGVF               
Sbjct: 60  --ISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAK 117
Query: 120 XVIISAPSKDAPM--FVVGVNEHEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176
            V+I+AP K   +  +V+GVN+ EY+ E   ++SNASCTTNCLAP+AKV+HD FGI++G 
Sbjct: 118 KVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGT 177
Query: 177 MTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFR 236
           MTT HS T  Q+ +D  S +D R  RAA+ NI+P++TGAAKAV  V+P L GKL G+A R
Sbjct: 178 MTTTHSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALR 236
Query: 237 VPT 239
           VPT
Sbjct: 237 VPT 239

>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With Nad, From Arabidopsis Thaliana Length = 337

Iteration: 1
 Score =  180 bits (457), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 121/266 (45%), Positives = 160/266 (60%), Gaps = 6/266 (2%)
Query: 3   KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           K+K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G +   +
Sbjct: 2   KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTG-GVKQASHLLKYDSTLGIFDA-D 59
Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
           +K   +  +    K + V   RNP  +PW E G + V+E TGVF                
Sbjct: 60  VKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKK 119
Query: 121 VIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
           VII+AP K D P +VVGVN   Y  +  I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 120 VIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 179
Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
            HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  VLP L GKL G+A RVPT
Sbjct: 180 THSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 238
Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
            +VSVVDL V++ K    +E+ AA +
Sbjct: 239 PNVSVVDLVVQVSKKTFAEEVNAAFR 264

>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate Dehydrogenase From Alcaligenes Xylosoxidans At 1.7 Resolution. Length = 335

Iteration: 1
 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/268 (39%), Positives = 156/268 (58%), Gaps = 11/268 (4%)
Query: 4   VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           +++ ING+GRIGR + R   +     D+E+VA+ND         ++ +YD+ HG++    
Sbjct: 2   IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND-LGDPKTNAHLTRYDTAHGKFPG-T 59
Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
           + V     ++ G+K + V   RNP ++PW     + V+E TG FT               
Sbjct: 60  VSVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK 118
Query: 121 VIISAPSK---DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
           VIISAP     DA + V GVN    K    ++SNAS TTNCLAPL K ++DK G+ +GLM
Sbjct: 119 VIISAPGGADVDATV-VYGVNHGTLKSTDTVISNASXTTNCLAPLVKPLNDKLGLQDGLM 177
Query: 178 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
           TTVH+ T  Q   D    +D R  R+A+ ++IP+ TGAA AVG VLP L+GKL G A RV
Sbjct: 178 TTVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRV 236
Query: 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           PT++VS+VDL+   +++ + +E+   +K
Sbjct: 237 PTINVSIVDLSFVAKRNTTVEEVNGILK 264

>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase From E.Coli In Complex With A Nad Cofactor Analog (3- Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate Anion Length = 338

Iteration: 1
 Score =  164 bits (414), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 94/268 (35%), Positives = 150/268 (55%), Gaps = 11/268 (4%)
Query: 4   VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++    
Sbjct: 2   VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 57
Query: 61  LKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXX 119
            +V+ ++  LF G+  + V   R+ + +PW E G + V++ TGV+               
Sbjct: 58  WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 117
Query: 120 XVIISAP-SKDAPMFVV-GVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
            V+ S P S D    VV GVN+ + + E  IVSNASCTTNC+ P+ K++ D +GI  G +
Sbjct: 118 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 177
Query: 178 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
           TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   +A RV
Sbjct: 178 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 236
Query: 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           PT++V+ +DL+V ++K    +E+   ++
Sbjct: 237 PTINVTAIDLSVTVKKPVKANEVNLLLQ 264

>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The D-Erythrose-4-Phosphate Dehydrogenase From E. Coli Length = 339

Iteration: 1
 Score =  164 bits (414), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 94/268 (35%), Positives = 150/268 (55%), Gaps = 11/268 (4%)
Query: 4   VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++    
Sbjct: 3   VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 58
Query: 61  LKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXX 119
            +V+ ++  LF G+  + V   R+ + +PW E G + V++ TGV+               
Sbjct: 59  WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118
Query: 120 XVIISAP-SKDAPMFVV-GVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
            V+ S P S D    VV GVN+ + + E  IVSNASCTTNC+ P+ K++ D +GI  G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 178
Query: 178 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
           TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   +A RV
Sbjct: 179 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 237
Query: 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           PT++V+ +DL+V ++K    +E+   ++
Sbjct: 238 PTINVTAIDLSVTVKKPVKANEVNLLLQ 265

>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The D-Erythrose-4-Phosphate Dehydrogenase From E. Coli Length = 339

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 148/268 (55%), Gaps = 11/268 (4%)
Query: 4   VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++    
Sbjct: 3   VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 58
Query: 61  LKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXX 119
            +V+ ++  LF G+  + V   R+ + +PW E G + V++ TGV+               
Sbjct: 59  WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118
Query: 120 XVIISAP-SKDAPMFVV-GVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
            V+ S P S D    VV GVN+ + + E  IVSNAS TTN + P+ K++ D +GI  G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASATTNSIIPVIKLLDDAYGIESGTV 178
Query: 178 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
           TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   +A RV
Sbjct: 179 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 237
Query: 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           PT++V+ +DL+V ++K    +E+   ++
Sbjct: 238 PTINVTAIDLSVTVKKPVKANEVNLLLQ 265

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	0.0
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	0.0
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	0.0
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	0.0
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	0.0
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	0.0
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	0.0
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	0.0
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	1e-167
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	1e-165
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	1e-160
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	1e-160
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	1e-159
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	1e-157
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	1e-155
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	1e-155
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	1e-154
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	1e-152
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	1e-144
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	1e-138
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	1e-137
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	1e-109
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	1e-106
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	1e-104
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	3e-67
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	3e-08
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	1e-07
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	5e-06
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	2e-05
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	2e-05
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	3e-05
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	4e-05
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	1e-04
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	1e-04
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	2e-04
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	2e-04
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	4e-04
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	4e-04
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	4e-04
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	4e-04
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	4e-04
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	4e-04
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	5e-04
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	7e-04
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	7e-04

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O Length = 337

 Score =  554 bits (1431), Expect = 0.0
 Identities = 232/265 (87%), Positives = 251/265 (94%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH +
Sbjct: 1   MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSD 60

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           +K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFTDK+KAAAHLKGGAKK
Sbjct: 61  IKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKK 120

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           V+ISAPSKDAPMFV GVNE +Y  +++IVSNASCTTNCLAPLAKVIHD FGI+EGLMTTV
Sbjct: 121 VVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           H+ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPTV
Sbjct: 181 HAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTV 240

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           DVSVVDLTVR+EK ASYD IK+AIK
Sbjct: 241 DVSVVDLTVRIEKAASYDAIKSAIK 265

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* Length = 332

 Score =  539 bits (1390), Expect = 0.0
 Identities = 172/262 (65%), Positives = 204/262 (77%), Gaps = 2/262 (0%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           V++ INGFGRIGRLV R+ L R +VE+VA+NDPFIT DY  YMFKYDS HG++   E+  
Sbjct: 2   VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAG-EVSH 60

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
            D   ++   K +  +  R+P  +PW  +  +  ++STGVF + D A  H+  GAKKV+I
Sbjct: 61  DDKH-IIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119

Query: 124 SAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
           +APS  APMFV+GVNE +Y  +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 179

Query: 184 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 243
           TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGMAFRVPTVDVS
Sbjct: 180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 239

Query: 244 VVDLTVRLEKDASYDEIKAAIK 265
           VVDLTV+L K+ +YDEIK  +K
Sbjct: 240 VVDLTVKLNKETTYDEIKKVVK 261

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* Length = 346

 Score =  534 bits (1378), Expect = 0.0
 Identities = 166/266 (62%), Positives = 206/266 (77%), Gaps = 4/266 (1%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
             ++ +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YMFKYDS HG++K   
Sbjct: 5   ARELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKG-S 62

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           ++ ++ + L+     ++V+  + P++IPW   G+ YVVESTGV+     A+ H+  GA++
Sbjct: 63  VEFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQR 121

Query: 121 VIISAPSKDAPMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
           V+ISAPS DAPMFV+GVNE++Y P  +NIVSNASCTTNCLAPLAKVIH++FGIVEGLMTT
Sbjct: 122 VVISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTT 181

Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
           VHS TATQKTVDGPS K WR GR A  NIIP+STGAAKAV KV+P L GKLTGMAFRVPT
Sbjct: 182 VHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPT 241

Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
            DVSVVDLT RL + A Y  IK A+K
Sbjct: 242 PDVSVVDLTCRLAQPAPYSAIKEAVK 267

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* Length = 345

 Score =  534 bits (1378), Expect = 0.0
 Identities = 167/268 (62%), Positives = 202/268 (75%), Gaps = 5/268 (1%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           M   K+GINGFGRIGRLV R    R D+E+VA+NDPF+  +++ Y+ KYDSVHGQ+   E
Sbjct: 9   MAATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPC-E 67

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           +   D   LL GEK V+VF  ++P +IPW +   + V ESTGVF  K+ A++HLKGGAKK
Sbjct: 68  VTHADGF-LLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKK 126

Query: 121 VIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
           VI+SAP KD  P++V+G+N H+Y  +  IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTT
Sbjct: 127 VIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTT 186

Query: 180 VHSITATQKTVDGPSS--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
           VH+ TA Q  VDGPS   KDWR GR A  NIIP+STGAAKAVGKVLP LNGKLTG+AFRV
Sbjct: 187 VHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRV 246

Query: 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           P   VSVVDL  RL+K A Y+E+   IK
Sbjct: 247 PIGTVSVVDLVCRLQKPAKYEEVALEIK 274

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 Length = 335

 Score =  532 bits (1373), Expect = 0.0
 Identities = 182/265 (68%), Positives = 212/265 (80%), Gaps = 2/265 (0%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           MGKVK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++    
Sbjct: 1   MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHG-T 59

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           +K ++ K L+    P+T+F  R+P +I W + GAEYVVESTGVFT  +KA AHL+GGAK+
Sbjct: 60  VKAENGK-LVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 118

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           VIISAPS DAPMFV+GVN  +Y   L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTV
Sbjct: 119 VIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTV 178

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           H+ITATQKTVDGPS K WR GR A  NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT 
Sbjct: 179 HAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTA 238

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           +VSVVDLT RLEK A YD+IK  +K
Sbjct: 239 NVSVVDLTCRLEKPAKYDDIKKVVK 263

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* Length = 354

 Score =  532 bits (1372), Expect = 0.0
 Identities = 173/269 (64%), Positives = 207/269 (76%), Gaps = 6/269 (2%)

Query: 1   MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
             +  +GINGFGRIGRLV R  ++R+D+ +VA+NDPF+  +YM Y+ KYDSVHG +    
Sbjct: 15  YFQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNG-T 73

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           ++V     L    K V VF  ++P EIPW  +GA+ V ESTGVFT ++KA+ HLKGGAKK
Sbjct: 74  VEVSGKD-LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKK 132

Query: 121 VIISAPSKD-APMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178
           VIISAP KD  PM+V+GVN  EY P + N++SNASCTTNCLAPLAK+I+DKFGIVEGLMT
Sbjct: 133 VIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMT 192

Query: 179 TVHSITATQKTVDGPSS--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFR 236
           TVHS+TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+PALNGKLTGMA R
Sbjct: 193 TVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIR 252

Query: 237 VPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           VPT DVSVVDLT +L K AS +EI  A+K
Sbjct: 253 VPTPDVSVVDLTCKLAKPASIEEIYQAVK 281

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* Length = 330

 Score =  527 bits (1361), Expect = 0.0
 Identities = 167/263 (63%), Positives = 203/263 (77%), Gaps = 5/263 (1%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEV 59

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
           KD   ++ G K + V   R+P  + W E G + V E+TG+F   + A  H+  GAKKV++
Sbjct: 60  KDGHLIVNG-KKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118

Query: 124 SAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           + PSKD  PMFV G N  +Y  + +IVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177

Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 237

Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
           SVVDLTVRLEK A+Y++IKAA+K
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVK 260

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* Length = 359

 Score =  517 bits (1335), Expect = 0.0
 Identities = 150/276 (54%), Positives = 194/276 (70%), Gaps = 14/276 (5%)

Query: 4   VKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
           +K+GINGFGRIGR+V + + +      ++++VAV D     +Y  Y  +YD+VHG++K+ 
Sbjct: 3   IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62

Query: 60  -------ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAA 112
                      KDD  ++ G + + V   RNP ++PW + G EYV+ESTG+FT K  A  
Sbjct: 63  VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122

Query: 113 HLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKV-IHDK 169
           HL+GGA+KV+ISAP+   A   V+GVN HEY P E ++VSNASCTTNCLAP+  V + + 
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEG 182

Query: 170 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 229
           FG+  GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 183 FGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGK 242

Query: 230 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           LTGM+FRVPT DVSVVDLT    +D S  EI AA+K
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALK 278

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* Length = 334

 Score =  463 bits (1195), Expect = e-167
 Identities = 143/264 (54%), Positives = 187/264 (70%), Gaps = 6/264 (2%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+GINGFGRIGR V R  L+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
             +  L+   K + V   R+PE + W E G + VVESTG FT ++ AA HL+ GAKKVII
Sbjct: 60  NGN-NLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118

Query: 124 SAPSKDA-PMFVVGVNEHEYKPEL-NIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           SAP+K+     V+GVN+ +Y P+  +++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178

Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           S T  Q+ +D P  KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GMA RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237

Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
           VSVVDL   LEK+ + +E+ AA+K
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALK 261

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* Length = 338

 Score =  459 bits (1183), Expect = e-165
 Identities = 127/265 (47%), Positives = 172/265 (64%), Gaps = 6/265 (2%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 5   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 62

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
            D        K V  F   +  ++PW +   + V+E TG +TDKDKA AH++ GAKKV+I
Sbjct: 63  VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121

Query: 124 SAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
           SAP+  D    V   N  E      +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 122 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 181

Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP   
Sbjct: 182 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 241

Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
            S+ +LTV LEK D + +++  A+K
Sbjct: 242 GSLTELTVVLEKQDVTVEQVNEAMK 266

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* Length = 337

 Score =  447 bits (1152), Expect = e-160
 Identities = 127/266 (47%), Positives = 167/266 (62%), Gaps = 6/266 (2%)

Query: 3   KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           K+K+ INGFGRIGR   R    R    +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           +K   D  +    K + V   RNP  +PW + G + V+E TGVF D+D A  HL+ GAKK
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118

Query: 121 VIISAPSKDA-PMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
           V+I+AP K   P +VVGVNE  Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178

Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
            HS T  Q+ +D    +D R  RAA  NI+P+STGAAKAV  VLP L GKL G+A RVPT
Sbjct: 179 THSYTGDQRLLDASH-RDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237

Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
            +VSVVDL V++ K    +E+ AA +
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFR 263

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} Length = 342

 Score =  447 bits (1152), Expect = e-160
 Identities = 129/266 (48%), Positives = 187/266 (70%), Gaps = 7/266 (2%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
            +K+GINGFGRIGR   R    R+++E+VA+ND      ++ ++ KYDSVHG +K   ++
Sbjct: 2   AIKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFKG-SVE 59

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
            KDD +++   K + VF  ++P +IPW + G + V+E+TGVF D++ A+ HL+GGAKKVI
Sbjct: 60  AKDD-SIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVI 118

Query: 123 ISAPSKDA-PMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           I+AP+K+     V+GVNE +Y P E NI+SNASCTTNCLAP  KV+++ FG+ +G M TV
Sbjct: 119 ITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTV 178

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           H+ T  Q+ +D P  KD+R  RAA+ NI+P++TGAAKA+G+V+P L GKL G A RVP  
Sbjct: 179 HAYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVP 237

Query: 241 DVSVVDLTVRLEK-DASYDEIKAAIK 265
           D S++DLTV + K  +S +E+    +
Sbjct: 238 DGSLIDLTVVVNKAPSSVEEVNEKFR 263

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} Length = 345

 Score =  443 bits (1143), Expect = e-159
 Identities = 125/265 (47%), Positives = 179/265 (67%), Gaps = 6/265 (2%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
             ++ INGFGRIGR+V R  ++    E+VA+N  +  ++ + ++ KYD+VHG++    ++
Sbjct: 4   MTRVAINGFGRIGRMVFRQAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKFDG-TVE 61

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
             +D  LL   K + +   R+P+E+PW + G E V+E+TG F  K+KA  H++ GAKKVI
Sbjct: 62  AFED-HLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVI 120

Query: 123 ISAPSKDA-PMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
           ++AP K+     VVGVNE +    +  ++SNASCTTNCLAP+ KV+ ++FGI  GLMTTV
Sbjct: 121 LTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTV 180

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
           H+ T  QK +D P  KD R  RA   +IIP++TGAAKA+ KVLP LNGKL GMA RVPT 
Sbjct: 181 HAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP 239

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
           +VS+VDL V +++D + + I  A K
Sbjct: 240 NVSLVDLVVDVKRDVTVEAINDAFK 264

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* Length = 331

 Score =  439 bits (1133), Expect = e-157
 Identities = 130/264 (49%), Positives = 176/264 (66%), Gaps = 7/264 (2%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGR V R++  R  VE+  +ND       + ++ KYDS++ ++   E+  
Sbjct: 1   MKVGINGFGRIGRQVFRILHSRG-VEVALIND-LTDNKTLAHLLKYDSIYHRFPG-EVAY 57

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
            D   L    K +    V++P+EIPWAE G   V+ESTGVFTD DKA AHL+GGAKKVII
Sbjct: 58  DDQ-YLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116

Query: 124 SAPSKDA-PMFVVGVNEHEYKPEL-NIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           +AP+K      V+GVN   Y P   +I+SNASCTTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVH 176

Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKA   VLP+L G+  GMA RVPT  
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235

Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
            S+ D+T  L+++ + +E+ AA+K
Sbjct: 236 GSISDITALLKREVTAEEVNAALK 259

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A Length = 380

 Score =  436 bits (1124), Expect = e-155
 Identities = 118/268 (44%), Positives = 174/268 (64%), Gaps = 9/268 (3%)

Query: 3   KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
            +++ INGFGRIGR   R    R   D+E+VA+N+         ++ +YDSV G++   +
Sbjct: 2   TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTS-DARTAAHLLEYDSVLGRFNA-D 59

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           +   ++ ++    K + +   RNP  +PW E   + V+ESTGVF   + A+ H++ GAKK
Sbjct: 60  ISYDEN-SITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKK 118

Query: 121 VIISAPSK--DAPMFVVGVNEHEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
           V+I+AP K      +V+GVN+ EY+ E   ++SNASCTTNCLAP+AKV+HD FGI++G M
Sbjct: 119 VLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTM 178

Query: 178 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
           TT HS T  Q+ +D    +D R  RAA+ NI+P++TGAAKAV  V+P L GKL G+A RV
Sbjct: 179 TTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRV 237

Query: 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           PT +VSVVDL V++EK    +++   ++
Sbjct: 238 PTPNVSVVDLVVQVEKPTITEQVNEVLQ 265

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} Length = 356

 Score =  435 bits (1121), Expect = e-155
 Identities = 122/270 (45%), Positives = 177/270 (65%), Gaps = 12/270 (4%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
            +K+ INGFGRIGR V ++  +R  +++VA+ND       + ++ KYDS  G +   +++
Sbjct: 21  SMKLAINGFGRIGRNVFKIAFERG-IDIVAIND-LTDPKTLAHLLKYDSTFGVYNK-KVE 77

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAA----HLK-GG 117
            +D   ++   + + +   R+P+ +PWA+ G + V+ESTGVF+           H+   G
Sbjct: 78  SRDG-AIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAG 136

Query: 118 AKKVIISAPSKDA-PMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176
           AKKVI++ P+KD     V+GVN+H+   +L  VSNASCTTNCLAPLAKV+H+ FGI +GL
Sbjct: 137 AKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGL 196

Query: 177 MTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFR 236
           MTTVH+ T  Q+ +D P   D R  RAA+ +IIP+STGAAKAVG VLP L GKL G + R
Sbjct: 197 MTTVHAYTNDQRILDLP-HSDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMR 255

Query: 237 VPTVDVSVVDLTVRLEK-DASYDEIKAAIK 265
           VP    S+VDLTV+L+K D + +EI + ++
Sbjct: 256 VPVPTGSIVDLTVQLKKKDVTKEEINSVLR 285

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* Length = 339

 Score =  432 bits (1114), Expect = e-154
 Identities = 118/268 (44%), Positives = 174/268 (64%), Gaps = 9/268 (3%)

Query: 3   KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
            +++ INGFGRIGR   R    R   D+E+VA+N+         ++ +YDSV G++   +
Sbjct: 2   TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTS-DARTAAHLLEYDSVLGRFNA-D 59

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           +   ++ ++    K + +   RNP  +PW E   + V+ESTGVF   + A+ H++ GAKK
Sbjct: 60  ISYDEN-SITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKK 118

Query: 121 VIISAPSK--DAPMFVVGVNEHEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
           V+I+AP K      +V+GVN+ EY+ E   ++SNASCTTNCLAP+AKV+HD FGI++G M
Sbjct: 119 VLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTM 178

Query: 178 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
           TT HS T  Q+ +D    +D R  RAA+ NI+P++TGAAKAV  V+P L GKL G+A RV
Sbjct: 179 TTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRV 237

Query: 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           PT +VSVVDL V++EK    +++   ++
Sbjct: 238 PTPNVSVVDLVVQVEKPTITEQVNEVLQ 265

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Length = 332

 Score =  426 bits (1098), Expect = e-152
 Identities = 131/264 (49%), Positives = 187/264 (70%), Gaps = 7/264 (2%)

Query: 5   KIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           ++ INGFGRIGRLV R+I +R   D+E+VA+ND    T  + ++ KYDSVH ++   +++
Sbjct: 2   RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG-KVE 59

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
             ++ +L+   K + VF   +P ++PW + G ++V+ESTGVF +++KA  HL+ GAKKVI
Sbjct: 60  YTEN-SLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVI 118

Query: 123 ISAPSKDA-PMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
           I+AP+K      V+G NE + KPE  I+S ASCTTN +AP+ KV+H+KFGIV G++TTVH
Sbjct: 119 ITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVH 178

Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKAV  V+P + GKL GMA RVPT D
Sbjct: 179 SYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPD 237

Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
            S+ DLTV +EK+ + +E+ A +K
Sbjct: 238 GSITDLTVLVEKETTVEEVNAVMK 261

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* Length = 335

 Score =  408 bits (1050), Expect = e-144
 Identities = 130/268 (48%), Positives = 181/268 (67%), Gaps = 11/268 (4%)

Query: 3   KVKIGINGFGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMT--YMFKYDSVHGQWKH 58
            V++ INGFGRIGR + R I++  R D+++VA+ND        T  ++ +YDSVHG++  
Sbjct: 2   AVRVAINGFGRIGRNILRAIVESGRTDIQVVAIND---LGPVETNAHLLRYDSVHGRFPK 58

Query: 59  HELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118
            E++V  D T+  G  P+ V  VRNP E+PW E   +  +E TG+FT +DKAA HL+ GA
Sbjct: 59  -EVEVAGD-TIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGA 116

Query: 119 KKVIISAPSKDA-PMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
           K+VI+SAP+  A    V GVN  +   +  ++SNASCTTNCLAP+A+V++D  GI +G M
Sbjct: 117 KRVIVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFM 176

Query: 178 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
           TT+HS T  Q T+D    KD    RAA+ ++IP+STGAAKAVG VLP L GKL G+A RV
Sbjct: 177 TTIHSYTGDQPTLDTMH-KDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRV 235

Query: 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           PT +VSVVDLT   +++ + +E+  AI+
Sbjct: 236 PTPNVSVVDLTFIAKRETTVEEVNNAIR 263

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* Length = 339

 Score =  391 bits (1008), Expect = e-138
 Identities = 96/270 (35%), Positives = 155/270 (57%), Gaps = 13/270 (4%)

Query: 3   KVKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMT--YMFKYDSVHGQWK 57
            V++ INGFGRIGR V R + +     ++ +VA+N+     D     ++ KYD+ HG++ 
Sbjct: 2   TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINE---LADAAGMAHLLKYDTSHGRFA 58

Query: 58  HHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGG 117
             E++ + D  L  G+  + V   R+ + +PW E G + V++ TGV+  ++   AH+  G
Sbjct: 59  W-EVRQERD-QLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAG 116

Query: 118 AKKVIISAPSKDA--PMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEG 175
           AKKV+ S P  +      V GVN+ + + E  IVSNASCTTNC+ P+ K++ D +GI  G
Sbjct: 117 AKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESG 176

Query: 176 LMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAF 235
            +TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   +A 
Sbjct: 177 TVTTIHSAMHDQQVIDAY-HPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAV 235

Query: 236 RVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           RVPT++V+ +DL+V ++K    +E+   ++
Sbjct: 236 RVPTINVTAIDLSVTVKKPVKANEVNLLLQ 265

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* Length = 335

 Score =  389 bits (1001), Expect = e-137
 Identities = 116/269 (43%), Positives = 166/269 (61%), Gaps = 13/269 (4%)

Query: 4   VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMT--YMFKYDSVHGQWKH 58
           +++ ING+GRIGR + R   +     D+E+VA+ND     D  T  ++ +YD+ HG++  
Sbjct: 2   IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND---LGDPKTNAHLTRYDTAHGKFPG 58

Query: 59  HELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118
             + V     ++     + V   RNP ++PW     + V+E TG FT K+KA AH+KGGA
Sbjct: 59  -TVSVNGS-YMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGA 116

Query: 119 KKVIISAPSKDA--PMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176
           KKVIISAP         V GVN    K    ++SNASCTTNCLAPL K ++DK G+ +GL
Sbjct: 117 KKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPLVKPLNDKLGLQDGL 176

Query: 177 MTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFR 236
           MTTVH+ T  Q   D    +D R  R+A+ ++IP+ TGAA AVG VLP L+GKL G A R
Sbjct: 177 MTTVHAYTNNQVLTDVYH-EDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIR 235

Query: 237 VPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           VPT++VS+VDL+   +++ + +E+   +K
Sbjct: 236 VPTINVSIVDLSFVAKRNTTVEEVNGILK 264

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} Length = 343

 Score =  319 bits (819), Expect = e-109
 Identities = 60/266 (22%), Positives = 98/266 (36%), Gaps = 22/266 (8%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
             K+ ING+G IG+ VA  +  +DD+E++ V       D+   +    +V   +K     
Sbjct: 2   PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTK--TKPDFEARL----AVEKGYKLFVAI 55

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
             +++  LF +  + V G      I      A+ VV+       K       K    K I
Sbjct: 56  PDNERVKLFEDAGIPVEG-----TILDIIEDADIVVDGAPKKIGKQNLENIYKPHKVKAI 110

Query: 123 ISAPSKDA---PMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
           +    K       F    + +    + + V   SC T  L  +   I+    I +  +  
Sbjct: 111 LQGGEKAKDVEDNFNALWSYNRCYGK-DYVRVVSCNTTGLCRILYAINSIADIKKARIVL 169

Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
           V           GP         A + N +   +     V  V+P   GK+   A  VPT
Sbjct: 170 VRRAADPNDDKTGPV-------NAITPNPVTVPSHHGPDVVSVVPEFEGKILTSAVIVPT 222

Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
             + +  L V ++ D S D+I  AIK
Sbjct: 223 TLMHMHTLMVEVDGDVSRDDILEAIK 248

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 Length = 337

 Score =  310 bits (797), Expect = e-106
 Identities = 53/265 (20%), Positives = 96/265 (36%), Gaps = 28/265 (10%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
             + ING+G +G+ VA  I Q+DD++++ V+      +    + K   ++          
Sbjct: 2   KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAI------- 54

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
             ++  LF +  + V G  +          A+ V++ T           + + G K +  
Sbjct: 55  -PERVKLFEKAGIEVAGTVDD-----MLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108

Query: 124 SAPSKDAP--MFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
                +     F    N  E   + +     SC T  L    K +HD FGI +     V 
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGK-DYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIVR 167

Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVG-KVLPALNGKLTGMAFRVPTV 240
                 +   GP +            IIP+        G  V   L+  +  MA  VPT 
Sbjct: 168 RGADPAQVSKGPIN-----------AIIPNPPKLPSHHGPDVKTVLDINIDTMAVIVPTT 216

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
            +   ++ V +E+  + D+I    +
Sbjct: 217 LMHQHNVMVEVEETPTVDDIIDVFE 241

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 Length = 334

 Score =  304 bits (781), Expect = e-104
 Identities = 57/265 (21%), Positives = 93/265 (35%), Gaps = 29/265 (10%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           KVK+G+NG+G IG+ VA  + ++DD+EL+ +       D+  Y  K   +       E  
Sbjct: 2   KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITK--TKPDFEAYRAKELGIPVYAASEEFI 59

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
            + +K            G      +       + +V++T           + K G K + 
Sbjct: 60  PRFEKE-----------GFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108

Query: 123 ISAPSKDAP--MFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
                 D     FV   N      + N V   SC T  L      I +    V  +M   
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGK-NYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRR 167

Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
            +     K          RG   A    +   +     V  V+P     +  MAF VPT 
Sbjct: 168 AADPNDTK----------RGPINAIKPTVEVPSHHGPDVQTVIP---INIETMAFVVPTT 214

Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
            + V  + V L+K  + D++    +
Sbjct: 215 LMHVHSVMVELKKPLTKDDVIDIFE 239

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 Length = 340

 Score =  211 bits (537), Expect = 3e-67
 Identities = 44/263 (16%), Positives = 89/263 (33%), Gaps = 24/263 (9%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           V + +NG+G IG+ VA  I+++ D++LV V     + +Y  ++          +   + V
Sbjct: 2   VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAK--TSPNYEAFI-------AHRRGIRIYV 52

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
                  F E  + V G      +      ++ VV++T           +L+     +  
Sbjct: 53  PQQSIKKFEESGIPVAG-----TVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQ 107

Query: 124 SAPSKDAPMFVVGVN-EHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
                +           +        +   SC T  L      ++    + +   T V  
Sbjct: 108 GGEKAEVADISFSALCNYNEALGKKYIRVVSCNTTALLRTICTVNKVSKVEKVRATIVRR 167

Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
               ++   GP               +PS    AK V  V+   N  +  MA   PT  +
Sbjct: 168 AADQKEVKKGPI-----NSLVPDPATVPSHH--AKDVNSVIR--NLDIATMAVIAPTTLM 218

Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
            +  + + L+      +I + ++
Sbjct: 219 HMHFINITLKDKVEKKDILSVLE 241

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* Length = 320

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 11/33 (33%), Positives = 23/33 (69%)

Query: 1  MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33
          M  +++ I G+G +GR V ++I ++ D++LV +
Sbjct: 1  MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGI 33

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} Length = 304

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 1  MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35
            K++  I G+G IGR   + + +  D E+  +  
Sbjct: 7  DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVR 41

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} Length = 350

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 58/232 (25%)

Query: 79  FGVRNPEEIPWAETGAEYVVESTGVFT-----------DKDKAAAHLKGGAKK--VIISA 125
             V+  E+    E   +  + ST                 + A +      K   +++S 
Sbjct: 48  DAVKWIEQGDIPEEVQDLPIVSTNYEDHKDVDVVLSALPNELAESIELELVKNGKIVVSN 107

Query: 126 PS-----KDAPMFVVGVN-EH---------EYKPELNIVSNASCTTNCLAPLAKVIHDKF 170
            S      D P+    +N EH             +  +V N +CT   ++   K + +  
Sbjct: 108 ASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIKPLIEIA 167

Query: 171 GIVEGLMTTVHSIT-ATQKTVDGPSSKDWRGGRAASFNIIP--------SSTGAAKAVG- 220
              + ++TT+ +++ A    +            A   NIIP         +    K  G 
Sbjct: 168 TKSKIIITTLQAVSGAGYNGISFM---------AIEGNIIPYIKGEEDKIAKELTKLNGK 218

Query: 221 ----KVLPALNGKLTGMAFRVPTVD---VSVVDLTVRLEKDASYDEIKAAIK 265
               +++PA N   T  + RVPT       +    +   +  + +EIK  +K
Sbjct: 219 LENNQIIPA-NLDSTVTSIRVPTRVGHMGVI---NIVTNERINIEEIKKTLK 266

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} Length = 308

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 1  MGKVKIGINGFGRIGRLV-ARVILQRDDVELVAVNDP 36
          M  +K+G+ G G I +     ++ + +  E V    P
Sbjct: 4  MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTP 40

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} Length = 315

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 3  KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37
           V++ + G GR G+   R I       LV +    
Sbjct: 10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSN 44

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} Length = 344

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 3  KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37
           ++I + G GRIG + A  I    D+ELV + DPF
Sbjct: 4  TLRIALFGAGRIGHVHAANIAANPDLELVVIADPF 38

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Length = 319

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 1  MGKVKIGINGFGRIGRLV-ARVILQRDDVELVAVNDP 36
          + K++IG+ G G I +     V+    D  L     P
Sbjct: 3  LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSP 39

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* Length = 294

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 1  MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
           GK  + + G GR G +  R +        + +   
Sbjct: 5  SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF 40

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} Length = 344

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 3  KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37
           ++IG+ G GRIG + A  +   DD  L A++D  
Sbjct: 2  SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVR 36

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} Length = 354

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 1  MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
             V +   G GR   ++A    + + ++LV     
Sbjct: 3  YNPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSR 38

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} Length = 357

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 3  KVKIGINGFGRIGRLVARVILQR-DDVELVAVNDPF 37
           +K GI G G IG    R +      VE+VAV D  
Sbjct: 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIV 58

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} Length = 359

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 1  MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
          + K ++ I G+G +G     +    D++E+  V D 
Sbjct: 3  LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDI 38

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Length = 288

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 30/150 (20%)

Query: 1   MGKVKIGING-FGRIGRLVARVILQRDDVELVAV----NDPFITTDYMTYMFKYDSVHGQ 55
            G +++ + G  GR+GR +   I +R DVEL AV       F+  D    +         
Sbjct: 19  PGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGS------- 71

Query: 56  WKHHELKVKDDKTLLFGEKPVTV-FGVRNPEEIPW-----AETGAEYVVESTGVFTDKDK 109
                +++ DD    F      + F    P+         A+    +++ +TG F+  ++
Sbjct: 72  -DFLGVRITDDPESAFSNTEGILDFSQ--PQASVLYANYAAQKSLIHIIGTTG-FSKTEE 127

Query: 110 AAAHLKGGAKKV-IISAPSKDAPMFVVGVN 138
           A   +   AK   I+ + +       +GVN
Sbjct: 128 AQ--IADFAKYTTIVKSGN-----MSLGVN 150

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Length = 346

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 3  KVKIGINGFGRIGRLVARVILQR-DDVELVAVNDPF 37
           ++  I G GR+G   AR ++ +   V+LVA     
Sbjct: 8  PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALD 43

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Length = 344

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 3  KVKIGINGFGRIGRLVARVILQR-DDVELVAVNDPF 37
           ++IG+ G G IG+     I  +    E+VAV D  
Sbjct: 2  SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVN 37

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Length = 444

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 1  MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
            KV+I     G  G+     + +RDDVE+VA  DP
Sbjct: 18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP 53

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Length = 359

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 1  MGKVKIGINGFGRIGRLV-ARVILQRDDVELVAVNDP 36
          +  +K+G+ G G   +      +LQ  D+ +VA  D 
Sbjct: 3  LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDS 39

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} Length = 336

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 7/36 (19%), Positives = 10/36 (27%)

Query: 1  MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
          M K++    G            L     EL  V + 
Sbjct: 2  MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFES 37

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} Length = 354

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 28/135 (20%)

Query: 147 NIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT-ATQKTVDGPSSKDWRGGRAAS 205
            I++N +C+T C     K I DKFG+    + T+ +++ A    V            A  
Sbjct: 150 AIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQAVSGAGYNGVPSM---------AIL 200

Query: 206 FNIIP--------SSTGAAKAVGKVLPAL----NGKLTGMAFRVPTVD---VSVVDLTVR 250
            N+IP          T + K +G +        N K++    RV  +D    S+    V+
Sbjct: 201 DNLIPFIKNEEEKMQTESLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESI---FVK 257

Query: 251 LEKDASYDEIKAAIK 265
            ++ A  +EIK  + 
Sbjct: 258 TKEGAEPEEIKEVMD 272

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Length = 387

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 3  KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDP 36
          K++ GI G G  G + +A  +    D ++VA  DP
Sbjct: 2  KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDP 36

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	100.0
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	100.0
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	100.0
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	100.0
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	100.0
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	100.0
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	100.0
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	100.0
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	100.0
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	100.0
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	100.0
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	100.0
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	100.0
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	100.0
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	100.0
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	100.0
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	100.0
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	100.0
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	100.0
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	100.0
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	100.0
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	100.0
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	100.0
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	100.0
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	100.0
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	100.0
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	100.0
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	100.0
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	100.0
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	100.0
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	100.0
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	100.0
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	100.0
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	100.0
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	100.0
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	100.0
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	100.0
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	100.0
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	100.0
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	100.0
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	100.0
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	100.0
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	100.0
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	100.0
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	99.23
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	98.98
4had_A	350	Probable oxidoreductase protein; structural genomi	98.98
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	98.95
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.94
4h3v_A	390	Oxidoreductase domain protein; structural genomics	98.93
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	98.92
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.89
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	98.88
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.88
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.88
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	98.87
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.86
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.86
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	98.86
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.86
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.84
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	98.84
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.82
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.81
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.8
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.8
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	98.79
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	98.78
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.78
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.77
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.76
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.76
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.75
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	98.74
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	98.74
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.73
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	98.71
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.68
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	98.67
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	98.67
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.66
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.66
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	98.66
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.65
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.64
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	98.63
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	98.63
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	98.62
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	98.62
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	98.61
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	98.61
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	98.6
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	98.56
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	98.55
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	98.54
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	98.54
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	98.54
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	98.53
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	98.53
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	98.52
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	98.46
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	98.43
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.39
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	98.37
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.34
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	98.34
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.3
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	98.21
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	98.16
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.08
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	98.04
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	98.0
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.9
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	97.84
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.81
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	97.64
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.64
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.58
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.56
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.52
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.46
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	97.44
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	97.43
2duw_A	145	Putative COA-binding protein; ligand binding prote	97.42
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.39
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.35
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	97.3
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.21
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	97.2
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.14
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.1
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.02
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	96.99
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.98
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.98
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.92
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.91
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	96.87
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.86
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.85
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.83
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.77
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.75
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.72
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.72
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.7
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.68
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.67
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.64
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.61
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.56
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.56
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.55
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.52
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	96.51
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.51
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.51
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	96.48
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.45
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.4
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.4
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.4
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.37
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.36
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.32
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.32
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	96.31
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.3
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	96.26
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.23
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	96.23
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.22
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.22
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.19
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.16
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.14
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.13
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.13
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.12
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.11
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.05
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.03
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.99
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	95.96
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.96
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.92
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.91
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.91
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	95.89
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.87
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.86
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.83
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	95.82
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.8
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.76
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.74
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	95.7
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.7
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.69
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.69
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.69
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.68
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.68
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	95.67
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	95.67
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	95.66
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.63
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.6
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.59
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.58
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.56
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.56
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.53
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.53
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.52
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	95.5
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.48
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.46
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.46
2csu_A	457	457AA long hypothetical protein; structural genomi	95.43
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	95.41
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.37
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.32
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.25
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.22
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.21
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	95.19
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	95.18
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.16
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.15
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.14
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.07
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.03
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	94.99
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.99
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	94.95
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	94.94
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.9
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	94.88
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	94.85
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.84
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.72
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	94.7
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.63
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	94.61
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	94.6
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	94.48
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.44
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	94.36
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	94.34
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	94.32
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	94.29
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	94.28
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	94.09
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.04
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	94.03
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	93.94
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	93.88
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	93.86
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	93.84
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.83
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	93.75
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.65
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.6
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.49
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.48
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	93.38
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	93.38
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	93.34
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	93.16
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.16
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	93.15
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	93.08
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	93.04
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	93.0
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	92.99
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	92.63
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	92.44
1xq6_A	253	Unknown protein; structural genomics, protein stru	92.26
1q0q_A	406	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	92.18
2y1e_A	398	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	92.17
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	92.08
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	91.95
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	91.91
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	91.89
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	91.71
3au8_A	488	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	91.62
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	91.52
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	91.38
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	91.22
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	91.21
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	91.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	90.99
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	90.94
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	90.86
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	90.55
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	90.41
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	90.38
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	90.34
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	90.34
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	89.95
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	89.94
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	89.88
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	89.86
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	89.44
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	89.36
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	89.35
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	89.34
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	89.08
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	89.06
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	89.06
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	89.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	88.96
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	88.9
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	88.9
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	88.7
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.63
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	88.61
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	88.55
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	88.54
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	88.52
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	88.51
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	88.5
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	88.44
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	88.4
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	88.34
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	88.29
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	88.19
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	88.18
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	88.17
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	88.15
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	88.13
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	88.1
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	88.05
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	87.83
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	87.83
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	87.8
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	87.74
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	87.6
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	87.54
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	87.53
4g65_A	461	TRK system potassium uptake protein TRKA; structur	87.48
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	87.33
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	87.3
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	87.14
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	87.07
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	87.03
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	86.94
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	86.94
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	86.87
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	86.75
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	86.66
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	86.66
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	86.63
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	86.42
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	86.32
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	86.28
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	86.26
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	86.18
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	86.18
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	86.15
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	86.13
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	86.09
4hb9_A	412	Similarities with probable monooxygenase; flavin,	86.06
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	85.59
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	85.54
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	85.5
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	85.48
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	85.36
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	85.16
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	85.11
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	85.06
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	85.05
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	85.04
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	84.81
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	84.68
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	84.59
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	84.57
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	84.48
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	84.44
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	84.43
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	84.34
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	84.58
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	84.09
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	83.84
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	83.77
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	83.73
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	83.7
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	83.54
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	83.49
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	83.37
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	83.25
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	83.21
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	83.15
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	83.09
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	83.08
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	83.02
2cul_A	232	Glucose-inhibited division protein A-related PROT	83.01
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	82.9
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	82.64
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	82.25
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	82.22
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	82.21
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	82.21
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	82.2
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	82.13
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	82.12
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	82.11
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	82.01
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	81.88
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	81.85
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	81.83
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	81.79
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	81.67
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	81.66
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	81.44
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	81.11
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	80.94
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	80.76
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	80.65
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	80.6
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	80.59
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	80.54
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	80.4
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	80.35
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	80.34
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	80.13
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	80.05

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=100.00  E-value=1.5e-62  Score=432.61  Aligned_cols=264  Identities=88%  Similarity=1.349  Sum_probs=250.2

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCccccc-ceeeeCCceEEECCEEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH-ELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+++||||+|||+||+.++|++.+++++|+++|+|+..+.++++|||+|||+||+|. + ++..++++.|.++|+.+.++
T Consensus         1 m~~~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~-~~~v~~~~~~~l~i~Gk~I~v~   79 (337)
T 3v1y_O            1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWK-HSDIKIKDSKTLLLGEKPVTVF   79 (337)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHHHCCTTTCCCC-SSCEEEEETTEEEETTEEEEEE
T ss_pred             CCceEEEEECCChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhhhccCCCccc-CceEEEcCCcEEEECCEEEEEE
Confidence            778999999999999999999999999999999998778999999999999999999 7 77776654699999999999


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchhhh
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCL  159 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~  159 (265)
                      ++.||++++|.+.++|+||+|||.+++++.++.++++|+|+++||+++.|+|++|||+|++.+++..++||||+|+|+++
T Consensus        80 ~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~p~vV~gVN~~~~~~~~~IISnasCTTn~L  159 (337)
T 3v1y_O           80 GIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCL  159 (337)
T ss_dssp             CCSSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCCSSSCBCCTTTTGGGCCTTCCEEECCCHHHHHH
T ss_pred             EecCcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCeECCCCCHHHcCCCCcEEecCchhhhhH
Confidence            88899999998889999999999999999999999999999999999888999999999999987678999999999999


Q ss_pred             HhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565          160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT  239 (265)
Q Consensus       160 ~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~  239 (265)
                      +++|+||+++|||+++.+|++|++|++|+.+|+++.++|+++|++++|++|+.+|.++++.+++|+++++++.+++|||+
T Consensus       160 ap~lkvL~d~fGI~~g~mTTvha~T~~q~~~Dg~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkltg~avRVPv  239 (337)
T 3v1y_O          160 APLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPT  239 (337)
T ss_dssp             HHHHHHHHHHHCEEEEEEEEEECCCTTSBSSSCCCTTCGGGGSBGGGCCEEEECCHHHHHHHHSGGGTTSEEEEEEECSC
T ss_pred             HHHHHHHHHhcCeEEEEEeeeeeccchhhhccCCccccccccccccceeecCCCChHHHHHHhccccCCcEEEEEEEcCC
Confidence            99999999999999999999999999999999987689999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          240 VDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       240 ~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++||+.+++++|+++++.||++++++
T Consensus       240 ~~~s~~dlt~~lek~~t~eei~~~lk  265 (337)
T 3v1y_O          240 VDVSVVDLTVRIEKAASYDAIKSAIK  265 (337)
T ss_dssp             SSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             CCcEEEEEEEEECCCCcHHHHHHHHH
Confidence            99999999999999999999999873

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=100.00  E-value=4.4e-62  Score=428.81  Aligned_cols=261  Identities=66%  Similarity=1.073  Sum_probs=248.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |+||||+|||+||+.++|++.+++++|+++|+|+..+.++++|||+|||+||+|+ +++..+++ .|.++|+.+.++++.
T Consensus         1 ~~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~-~~v~~~~~-~l~i~Gk~I~v~~e~   78 (332)
T 3pym_A            1 MVRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYA-GEVSHDDK-HIIVDGKKIATYQER   78 (332)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCS-SCEEECSS-EEEETTEEEEEECCS
T ss_pred             CeEEEEECCCcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhcccCCCCCCC-CcEEEcCC-EEEECCEEEEEEeec
Confidence            4899999999999999999999999999999998778999999999999999999 88777665 799999999999888


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchhhhHhH
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPL  162 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~~  162 (265)
                      ||++++|.+.++|+||+|||.+++++.++.++++|+|+++||+++.|+|++|||+|++.+++..++||||+|+|+|++++
T Consensus        79 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~p~vV~gVN~~~~~~~~~IISnasCTTn~Lap~  158 (332)
T 3pym_A           79 DPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPL  158 (332)
T ss_dssp             SGGGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCTTCCEEECCCHHHHHHHHH
T ss_pred             ccccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECCCCCCCCeEeeccchhhcCccccEEecCcchhhhhHHH
Confidence            99999998889999999999999999999999999999999999888899999999999987678999999999999999


Q ss_pred             HHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeCce
Q 024565          163 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV  242 (265)
Q Consensus       163 L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~~G  242 (265)
                      ++||+++|||+++.+|++|++|++|+.+|++++++|+++|.+++|++|+.+|.++++.+++|+++++++.+++|||+++|
T Consensus       159 lkvL~d~fGI~~g~mTTvha~T~~Q~~vDg~~~kd~r~~r~aa~NiIP~~tGaakav~kVlPeL~gkltg~avRVPv~~~  238 (332)
T 3pym_A          159 AKVINDAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDV  238 (332)
T ss_dssp             HHHHHHHHCEEEEEEEEEEECCTTSCSSSCCCTTCTGGGSCGGGCCEEEECSHHHHHHHHSGGGTTSEEEEEEEESCSSC
T ss_pred             HHHHHHhcCeEEEEEEEEeeccccchhccCCCcccCccccchhhcccCCCCChHHHHHHhhhhhcCCEEEEEEEcCCCCc
Confidence            99999999999999999999999999999987789999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEecCCCCHHHHHHHhC
Q 024565          243 SVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       243 ~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |+.+++++|+++++.||++++++
T Consensus       239 s~~dlt~~lek~~t~eei~~~lk  261 (332)
T 3pym_A          239 SVVDLTVKLNKETTYDEIKKVVK  261 (332)
T ss_dssp             EEEEEEEEESSCCCHHHHHHHHH
T ss_pred             EeeEEEEEECCcCCHHHHHHHHH
Confidence            99999999999999999999873

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=100.00  E-value=5.5e-61  Score=422.24  Aligned_cols=260  Identities=49%  Similarity=0.770  Sum_probs=245.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ++||||+|||+||+.++|++.+++++|+++|+| ..+.++++|||+|||+||+|. +++..+++ .|.++|+.+.++++.
T Consensus         4 ~~kv~INGfGrIGr~v~R~~~~~~~~~ivaind-~~d~~~~a~l~kyDS~hG~f~-~~v~~~~~-~l~inGk~I~v~~e~   80 (338)
T 3lvf_P            4 AVKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDG-GFRVNGKEVKSFSEP   80 (338)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEEC-SSCHHHHHHHHHCCTTTCCCS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             cEEEEEECCCcHHHHHHHHHHHCCCceEEEEec-CCCHHHHHHHhccCCCCCCcC-CeEEEcCC-EEEECCEEEEEEEec
Confidence            589999999999999999999999999999999 458899999999999999999 88877766 799999999999888


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CCceEEeeeccccccCCCCeEEcCCCchhhhHh
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAP  161 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~  161 (265)
                      ||++++|.+.++|+||+|||.+++++.++.++++|+|+++||+++. ++|++|||+|++.+++..++||||+|+|+|+++
T Consensus        81 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~~~~IISNasCTTn~Lap  160 (338)
T 3lvf_P           81 DASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAP  160 (338)
T ss_dssp             CGGGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCEECCTTTTGGGCCSCCSEEECCCHHHHHHHH
T ss_pred             ccccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCCCCCCCEEeccCCHHHcCccCCeEecCchhhhhhHH
Confidence            9999999888999999999999999999999999999999999865 689999999999998667899999999999999


Q ss_pred             HHHHHHHhcCceEEEEEEEeeccccccccCCCCCC-cccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeC
Q 024565          162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV  240 (265)
Q Consensus       162 ~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~-~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~  240 (265)
                      +|+||+++|||+++.+||+|++|++|+.+|+++.+ +|+++|++++|++|+.+|.++++.+++||++++++.+++|||++
T Consensus       161 ~lkvL~d~fGI~~g~mTTvha~T~~q~~~D~~~~k~d~r~~r~aa~NiIP~~tGaakav~kVlPeL~gkltg~avRVPv~  240 (338)
T 3lvf_P          161 VAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVA  240 (338)
T ss_dssp             HHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCCTTCCTTTTSCGGGCCEEEECSTTTTGGGTCGGGTTSEEEEEEEESCS
T ss_pred             HHHHHHHhcCEEEEEEeeeccccchhhhhcCCccccccccchhhhceEEeCCCchHHHHhhhchhhcCcEEEEEEEcCCC
Confidence            99999999999999999999999999999987654 89999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEecC-CCCHHHHHHHhC
Q 024565          241 DVSVVDLTVRLEK-DASYDEIKAAIK  265 (265)
Q Consensus       241 ~G~~~~~~v~~~~-~~~~e~v~~~~~  265 (265)
                      +||+.+++++|++ +++.||++++++
T Consensus       241 ~~s~~dlt~~lek~~~t~eei~~~lk  266 (338)
T 3lvf_P          241 TGSLTELTVVLEKQDVTVEQVNEAMK  266 (338)
T ss_dssp             SCEEEEEEEEESSSSCCHHHHHHHHH
T ss_pred             ceEEEEEEEEEccCCCCHHHHHHHHH
Confidence            9999999999999 999999999874

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=100.00  E-value=1.1e-60  Score=420.94  Aligned_cols=259  Identities=48%  Similarity=0.824  Sum_probs=233.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |+||||+|||+||+.++|++.+++++|+++|+|+ .+.++++|||+|||+||+|. +++..+++ .|.++|+.+.++++.
T Consensus         4 ~~kv~INGfGrIGr~v~Ra~~~~~~~~ivaINd~-~d~~~~a~llkyDS~hG~f~-~~v~~~~~-~l~inGk~I~v~~e~   80 (345)
T 4dib_A            4 MTRVAINGFGRIGRMVFRQAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKMIRLLNNR   80 (345)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTCSSSEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEECSS-EEEETTEEEEEECCS
T ss_pred             cEEEEEECCCcHHHHHHHHHHhCCCceEEEEcCC-CCHHHHHHHhcccCCCCCCC-CcEEEcCC-EEEECCEEEEEeecC
Confidence            6899999999999999999999999999999998 48899999999999999999 88777665 799999999999888


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CCceEEeeeccccccC-CCCeEEcCCCchhhhH
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKP-ELNIVSNASCTTNCLA  160 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~~~~v~~vn~~~~~~-~~~~Va~p~C~~ta~~  160 (265)
                      ||++++|.+.++|+||+|||.+++++.++.++++|+|+++||+++. ++|++|||+|++.+++ ..++||||+|+|+|++
T Consensus        81 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~~~~~IISNaSCTTn~La  160 (345)
T 4dib_A           81 DPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLA  160 (345)
T ss_dssp             CGGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTTCSEEECCCHHHHHHH
T ss_pred             ChhhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHHcCcccCeEEECCchhhhhhH
Confidence            9999999888999999999999999999999999999999999865 5899999999999985 5789999999999999


Q ss_pred             hHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeC
Q 024565          161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV  240 (265)
Q Consensus       161 ~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~  240 (265)
                      ++++||+++|||+++.+|++|++|++|+.+|+++ .+|+++|++++|++|+.+|.++++.+++|+++++++.+++|||++
T Consensus       161 p~lkvL~d~fGI~~g~mTTvhA~T~~Q~~~D~p~-kd~r~~r~aa~NIIP~~tGaakav~kVlPeL~gkltg~avRVPv~  239 (345)
T 4dib_A          161 PVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP  239 (345)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEECC--------------CCTTSCTTTCCEEECCTHHHHHHHHCGGGTTTEEEEEEECCCS
T ss_pred             HHHHHHHHhcCeEEEEEEeeeeccCCceeccccc-cccccchhhhhceecCCCchHHHHhhhccccCCcEEEEEEEccCc
Confidence            9999999999999999999999999999999875 789999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          241 DVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       241 ~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      +||+.+++++|+++++.||++++++
T Consensus       240 ~~s~~dlt~~lek~~t~eei~~~lk  264 (345)
T 4dib_A          240 NVSLVDLVVDVKRDVTVEAINDAFK  264 (345)
T ss_dssp             SEEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             ccEEEEEEEEECCCCCHHHHHHHHH
Confidence            9999999999999999999999873

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=100.00  E-value=1.7e-60  Score=419.19  Aligned_cols=259  Identities=49%  Similarity=0.807  Sum_probs=244.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ++||||+|||+||+.++|++.++  +++|+++|+|+ .+.++++|||+|||+||+|. +++..+++ .|.++|+.+.+++
T Consensus         2 ~~kv~INGfGrIGr~v~Ra~~~~~~~~~~ivaiNd~-~d~~~~a~l~kyDS~hG~f~-~~v~~~~~-~l~i~Gk~I~v~~   78 (335)
T 3doc_A            2 AVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDL-GPVETNAHLLRYDSVHGRFP-KEVEVAGD-TIDVGYGPIKVHA   78 (335)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCSEEEEEEECS-SCHHHHHHHHHEETTTEECS-SCCEECSS-EEESSSSEEEEEC
T ss_pred             CEEEEEECCCcHHHHHHHHHHhccCCCeEEEEEeCC-CCHHHHHHHhcccCCCCCCC-CeEEEecC-EEEECCEEEEEEe
Confidence            58999999999999999999987  78999999998 58999999999999999999 88776655 7999999999998


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccCCCCeEEcCCCchhhh
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCL  159 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~  159 (265)
                      +.||++++|.+.++|+||+|||.+++++.++.++++|+|+++||+++.| +|++|||+|++.+++..++||||+|+|+++
T Consensus        79 e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~~p~vV~gVN~~~~~~~~~IISNasCTTn~L  158 (335)
T 3doc_A           79 VRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCL  158 (335)
T ss_dssp             CSSTTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCTTCSEECCTTTTGGGCCTTCCEEECCCHHHHHH
T ss_pred             ecccccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCCCCCCCEEecccCHHHhCccCCeEecCchhhhhh
Confidence            8899999998889999999999999999999999999999999998655 699999999999987678999999999999


Q ss_pred             HhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565          160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT  239 (265)
Q Consensus       160 ~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~  239 (265)
                      +++++||+++|||+++.+|++|++|++|+.+|++ +++|+++|++++|++|+.+|.++++.+++|+++++++.+++|||+
T Consensus       159 ap~lk~L~d~fGI~~g~mTTvha~T~~q~~~D~p-~kd~r~~r~aa~NiIP~~tGaakav~kVlPeL~gkltg~avRVPv  237 (335)
T 3doc_A          159 APVAQVLNDTIGIEKGFMTTIHSYTGDQPTLDTM-HKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPT  237 (335)
T ss_dssp             HHHHHHHHHHTCEEEEEEEEEEECCTTSCSSCCC-CSSTTTTSCTTSSCEEEECCHHHHHHHHSGGGTTCEEEEEEEESC
T ss_pred             HHhHHHHHHHcCEEEEEEEeeeeccchhhhhcCc-cccccccccCcceEecCCCchHHHHHHhccccCCCEEEEEEEecc
Confidence            9999999999999999999999999999999987 478999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          240 VDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       240 ~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++||+.+++++|+++++.||++++++
T Consensus       238 ~~~s~~dlt~~lek~~t~eei~~~lk  263 (335)
T 3doc_A          238 PNVSVVDLTFIAKRETTVEEVNNAIR  263 (335)
T ss_dssp             SSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             ccccceEEEEEECCCCCHHHHHHHHH
Confidence            99999999999999999999999873

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=100.00  E-value=2.5e-60  Score=419.80  Aligned_cols=260  Identities=64%  Similarity=1.066  Sum_probs=247.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |+||||+|+|+||+.++|++.+++ +|+++|+|+..+.++++|||+|||+||+|. +++..+++ .|.++|+.+.++++.
T Consensus         7 ~~kvgInGFGRIGrlv~R~~~~~~-veivainDp~~d~~~~a~l~~yDS~hG~f~-~~v~~~~~-~l~i~Gk~I~v~~e~   83 (346)
T 3h9e_O            7 ELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GSVEFRNG-QLVVDNHEISVYQCK   83 (346)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEEECTTCCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             eeEEEEECCChHHHHHHHHHHhCC-CEEEEEeCCCCChhHhcccccccCCCCCCC-CcEEEcCC-EEEECCEEEEEEecC
Confidence            689999999999999999999887 999999998778999999999999999999 88877665 799999999999888


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccC-CCCeEEcCCCchhhhHh
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKP-ELNIVSNASCTTNCLAP  161 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~-~~~~Va~p~C~~ta~~~  161 (265)
                      ||++++|.+.++|+||+|||.+++++.++.++++|+|++|||+++.|+|++|||+|++.+++ ..++||||+|+|+|+++
T Consensus        84 dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~d~plvV~gVN~~~~~~~~~~IISNasCTTn~Lap  163 (346)
T 3h9e_O           84 EPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAP  163 (346)
T ss_dssp             SGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCTTTCSEEECCCHHHHHHHH
T ss_pred             ChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCeeCcccCHHHcCcccCCEEECCcchhhhHHH
Confidence            99999998889999999999999999999999999999999999888999999999999986 57899999999999999


Q ss_pred             HHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeCc
Q 024565          162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD  241 (265)
Q Consensus       162 ~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~~  241 (265)
                      +++||+++|||+++.+||+|++|++|+.+|++++++|+++|++++|++|+.+|.++++.+++|+++++++.+++|||+++
T Consensus       164 ~lkvL~d~fGI~~g~mTTvhA~T~tQ~~~Dg~~~kd~r~~r~aa~NiIP~~tGaakavgkViPeL~gkltg~avRVPv~~  243 (346)
T 3h9e_O          164 LAKVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPD  243 (346)
T ss_dssp             HHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTSGGGGSBTTTCCEEECCHHHHHHHHHSGGGTTTEEEEEEEESCSS
T ss_pred             HHHHHHHHhCeeEEEEeeeeeccCccccccCCCCCCccccccceeeeecccCchHHhhheechhhcCcEEEEEEEccccc
Confidence            99999999999999999999999999999998778999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEecCCCCHHHHHHHhC
Q 024565          242 VSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       242 G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ||+.+++++|+++++.||++++++
T Consensus       244 ~s~~dlt~~lek~~t~eei~~~lk  267 (346)
T 3h9e_O          244 VSVVDLTCRLAQPAPYSAIKEAVK  267 (346)
T ss_dssp             CEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             ceeEEEEEEECCcCCHHHHHHHHH
Confidence            999999999999999999999873

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=100.00  E-value=1.5e-60  Score=421.94  Aligned_cols=262  Identities=57%  Similarity=0.946  Sum_probs=246.1

Q ss_pred             ccEEEEEccChhHHHHHHH----HHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeee-------CCceEEE
Q 024565            3 KVKIGINGFGRIGRLVARV----ILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK-------DDKTLLF   71 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~----L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~   71 (265)
                      ++||||+|||+||+.++|+    +.+++++|+++|+|+..+.++++|||+|||+||+|. +++...       .++.|.+
T Consensus         2 ~~kv~INGFGrIGr~v~Ra~~~~~~~~~~~~vvaINd~~~d~~~~a~llkyDS~hG~f~-~~v~~~~~~~~~~~~~~l~i   80 (359)
T 3ids_C            2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFK-YEVTTTKSSPSVAKDDTLVV   80 (359)
T ss_dssp             CEEEEEECTTHHHHHHHHHHHHTTCBTTTEEEEEEECSSCCHHHHHHHHHEETTTEECS-SCEEEECSCTTSSSCCEEEE
T ss_pred             ceEEEEECCChHHHHHHHHhHHHHhcCCCcEEEEEecCCCCHHHHHHHhcccCCCCCEe-eEEEecccccccCCCCEEEE
Confidence            5899999999999999999    677889999999997778999999999999999999 888762       4458999


Q ss_pred             CCEEEEEEe-cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CCceEEeeeccccccC-CCCe
Q 024565           72 GEKPVTVFG-VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKP-ELNI  148 (265)
Q Consensus        72 ~g~~~~~~~-~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~~~~v~~vn~~~~~~-~~~~  148 (265)
                      +|+.+.+++ +.+|++++|.+.++|+||+|||.+++++.++.++++|+|+|+||+++. |+|++|||+|++.+++ ..++
T Consensus        81 nGk~I~v~~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~~~~~I  160 (359)
T 3ids_C           81 NGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHV  160 (359)
T ss_dssp             TTEEEEECCCCSSTTTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCCBSSCEECCTTTTGGGCCTTTCSE
T ss_pred             CCEEEEEEEccCCcccCCccccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCCeEEeccCHHHcCCCCCCE
Confidence            999999987 789999999888999999999999999999999999999999999865 7899999999999986 5789


Q ss_pred             EEcCCCchhhhHhHHHHH-HHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCC
Q 024565          149 VSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALN  227 (265)
Q Consensus       149 Va~p~C~~ta~~~~L~pL-~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~  227 (265)
                      ||||+|+|+|++++++|| +++|||+++.+||+|++|++|+.+|+++.++|+++|++++|++|+.+|.++++.+++||++
T Consensus       161 ISNaSCTTn~Lap~lkvL~~d~fGI~~g~mTTvha~T~tQ~~vD~~~~kd~r~~r~aa~NiIP~~tGaakav~kVlPeL~  240 (359)
T 3ids_C          161 VSNASCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQ  240 (359)
T ss_dssp             EECCCHHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCTTSBSSSCCCTTCTGGGSBGGGCCEEEECSHHHHHHHHSGGGT
T ss_pred             EECCchHhhhHHHhhhhhhhccCCeEEEEEeeeeeccchhhhhcCCccccccccccCcceeEccCCchHHHHhhhchhhc
Confidence            999999999999999999 9999999999999999999999999986679999999999999999999999999999999


Q ss_pred             CceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          228 GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       228 ~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++++.+++|||+++||+.+++++|+++++.||++++++
T Consensus       241 gkltg~avRVPv~~vs~~dlt~~lek~~t~eei~~~lk  278 (359)
T 3ids_C          241 GKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALK  278 (359)
T ss_dssp             TSEEEEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHH
T ss_pred             CceEEEEEEcCCCCcEEEEEEEEECCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999873

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=100.00  E-value=2e-59  Score=415.29  Aligned_cols=263  Identities=63%  Similarity=1.020  Sum_probs=244.2

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |.++||||+|+|+||+.++|++.++|++|+++|+++..+.++++|+++|||+||+|. +.+..+++ .|.++|+.+.+++
T Consensus         9 ~~~~kv~INGfGrIGr~v~ra~~~~~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~-~~v~~~~~-~l~v~Gk~i~v~~   86 (345)
T 2b4r_O            9 MAATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVTHADG-FLLIGEKKVSVFA   86 (345)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEESSCEEEEEC
T ss_pred             hhheEEEEeCCchHHHHHHHHHhhCCCcEEEEEcCCCCChHHHHHHhccCCCCCcCC-CCEEEcCC-EEEECCEEEEEEE
Confidence            678999999999999999999999999999999996668999999999999999998 77777655 7999999999987


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccCCCCeEEcCCCchhhh
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCL  159 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~  159 (265)
                      ..||++++|.+.++|+||+|||.+.+++.++.++++|+|++|||+++.+ +|++|||+|++.+++..++||||+|+|+++
T Consensus        87 ~~dp~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsaps~~dvplvV~gVN~~~~~~~~~IISNasCTTn~L  166 (345)
T 2b4r_O           87 EKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCL  166 (345)
T ss_dssp             CSSGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCTTCCEEECCCHHHHHH
T ss_pred             cCCcccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHHhCCCCCEEECCchHHHHH
Confidence            6789999997779999999999999999999999999999999988654 799999999999986568999999999999


Q ss_pred             HhHHHHHHHhcCceEEEEEEEeeccccccccCCCC--CCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEe
Q 024565          160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV  237 (265)
Q Consensus       160 ~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~--~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~v  237 (265)
                      +++|+||+++|||+++.+||+|++||+|+.+|++.  +.+|+++|++++|++|+.+|.++++.+++|+++++++.+++||
T Consensus       167 ap~lk~L~d~fGI~~~~mTTvhA~T~~q~~~d~~~~~~~d~r~~r~~a~NiIP~~tGaakav~kVlP~L~gkltg~avRV  246 (345)
T 2b4r_O          167 APLAKVINDRFGIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRV  246 (345)
T ss_dssp             HHHHHHHHHHHCEEEEEEEEEECCCTTSCSSSCCCGGGCCGGGGSCTTTCCEEEECCHHHHHHHHSGGGTTTEEEEEEEC
T ss_pred             HHHHHHHHHhcCeeEEEEEEeehhhchhhhhcccccccCCCccccchhhccCcCCCchHHHHHHhhhhcCCcEEEEEEEe
Confidence            99999999999999999999999999999999875  2689999999999999999999999999999999999999999


Q ss_pred             eeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          238 PTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       238 P~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |+++||+.+++++|+++++.|||+++|+
T Consensus       247 Pv~~gs~~dltv~lek~~t~eei~~~lk  274 (345)
T 2b4r_O          247 PIGTVSVVDLVCRLQKPAKYEEVALEIK  274 (345)
T ss_dssp             SCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             cccceEEEEEEEEECCCCCHHHHHHHHH
Confidence            9999999999999999999999999874

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=100.00  E-value=3.1e-59  Score=417.78  Aligned_cols=263  Identities=69%  Similarity=1.116  Sum_probs=241.2

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |||+||||+|+|++|++++|+|.+||++|+++|+++..+.+.++|+++||++||+|. +.+...++ .+.++|+.+.++.
T Consensus         1 mM~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~-~~~~~~~~-~l~v~g~~i~v~~   78 (335)
T 1u8f_O            1 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFH-GTVKAENG-KLVINGNPITIFQ   78 (335)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEEC
T ss_pred             CCceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCC-CceEEcCC-eEEECCeEEEEEe
Confidence            777999999999999999999999999999999996347788899999999999998 66555444 6889999999887


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchhhhH
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLA  160 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~  160 (265)
                      ..|+++++|...++|+||+|||++.+.+.+++++++|+|++++|+++++.|++|||+|++++++.+++||||||+|||++
T Consensus        79 ~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap~~~~p~~V~gvN~~~~~~~~~iIsnpsCtt~~l~  158 (335)
T 1u8f_O           79 ERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLA  158 (335)
T ss_dssp             CSSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSSSCBCCTTTTGGGCCTTCSEEECCCHHHHHHH
T ss_pred             cCCHHHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccCCCCCCeEEeccCHHHhCCCCCEEECCChHHHHHH
Confidence            67899999977789999999999999999999999999989999997778999999999999854789999999999999


Q ss_pred             hHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeC
Q 024565          161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV  240 (265)
Q Consensus       161 ~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~  240 (265)
                      |+|+||+++|||+++.++++|++||+++.+|++...+++++|.+++|++|+..|+++|+.+++||++++++++++|||++
T Consensus       159 ~~lkpL~~~~gI~~~~~tt~~a~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~kvlpel~gkl~~~a~rVP~~  238 (335)
T 1u8f_O          159 PLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTA  238 (335)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTCGGGGSBTTTCCEEEECCTTTTHHHHSGGGTTSEEEEEEEESCS
T ss_pred             HHHHHHHHhCCcceeEEEEEeccccCccccccccccccccchhhhcCceeccCChhHHHHHHHHHhCCcEEEEEEEeccC
Confidence            99999999999999999999999999999898643589999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          241 DVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       241 ~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |||+.+++++|+++++.|||+++|+
T Consensus       239 ~g~~~~l~~~l~~~~t~eei~~~~~  263 (335)
T 1u8f_O          239 NVSVVDLTCRLEKPAKYDDIKKVVK  263 (335)
T ss_dssp             SCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             CEEEEEEEEEECCCCCHHHHHHHHH
Confidence            9999999999999999999999874

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=100.00  E-value=5.1e-59  Score=414.55  Aligned_cols=259  Identities=64%  Similarity=1.031  Sum_probs=240.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |+||||+|+||+|++++|+|.+||++|+++|++.. +...++||++||++||+|. +.+..+++ .+.++|+.+.+++..
T Consensus         1 ~ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~~-~~~~~a~l~~~ds~~g~~~-~~v~~~~~-~l~v~g~~i~v~~~~   77 (330)
T 1gad_O            1 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL-DADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAER   77 (330)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS-CHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             CeEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCCC-ChhHHhHhhcccccCCCCC-CeEEEcCC-EEEECCEEEEEEEcC
Confidence            48999999999999999999999999999999964 6788999999999999998 76655544 689999999998777


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CCceEEeeeccccccCCCCeEEcCCCchhhhHh
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAP  161 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~  161 (265)
                      ||++++|...++|+||+|||++.+++.++.++++|+|++++|++.+ +.|++|||+|+++++ .+++||||||++||++|
T Consensus        78 dp~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~~~~~p~~V~GvN~~~~~-~~~iIsNpsCtt~~lap  156 (330)
T 1gad_O           78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYA-GQDIVSNASCTTNCLAP  156 (330)
T ss_dssp             SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCC-SCSEEECCCHHHHHHHH
T ss_pred             ChhhCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCCCCCCCeEeecCCHHHhC-CCCEEEcCChHHHHHHH
Confidence            8999999777899999999999999999999999999898999864 478999999999998 58999999999999999


Q ss_pred             HHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeCc
Q 024565          162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD  241 (265)
Q Consensus       162 ~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~~  241 (265)
                      +|+||+++|||+++.++++|++||++..+|++...+++++|.+++|++|+..++++|+.+++|+++++++++|+|||++|
T Consensus       157 ~lkpL~~~~gI~~~~~ttvha~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~kvlpel~gkl~~~a~rVP~~~  236 (330)
T 1gad_O          157 LAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN  236 (330)
T ss_dssp             HHHHHHHHHCEEEEEEEEEECCCTTSBSSSCCCSSCGGGGSBTTTCCEEEECCTTTTHHHHSGGGTTSEEEEEEECSCSS
T ss_pred             HHHHHHHhcCeeEEEEEEEEecccccccccccccCCCccccchhhCeEEcCCCcchhHHHHHHHhcCcEEEEEEEecccc
Confidence            99999999999999999999999999999987546899999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEecCCCCHHHHHHHhC
Q 024565          242 VSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       242 G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ||+.+++++++++++.|||+++|+
T Consensus       237 g~~~~l~~~l~k~~t~eei~~~~k  260 (330)
T 1gad_O          237 VSVVDLTVRLEKAATYEQIKAAVK  260 (330)
T ss_dssp             CEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             EEEEEEEEEECCCCCHHHHHHHHH
Confidence            999999999999999999999874

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=100.00  E-value=1.3e-58  Score=412.37  Aligned_cols=259  Identities=55%  Similarity=0.875  Sum_probs=239.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |+||||+|+||+|++++|+|.+||++|+++|++. .+.+.++|+++||++||+|. +++...++ .+.++|+.+.++++.
T Consensus         1 mikVgI~G~G~iGr~l~R~l~~~~~veivain~~-~~~~~~~~ll~~ds~~G~~~-~~v~~~~~-~l~v~g~~i~v~~~~   77 (334)
T 3cmc_O            1 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL-TDANTLAHLLKYDSVHGRLD-AEVSVNGN-NLVVNGKEIIVKAER   77 (334)
T ss_dssp             CEEEEEESCSHHHHHHHHHHTTCTTEEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             CeEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCC-CCHHHHHHHhccCCcCCCcC-ceEEEccC-cEEECCEEEEEEecC
Confidence            4899999999999999999999999999999996 37788999999999999998 77665554 788999999888667


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccC-CCCeEEcCCCchhhhH
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKP-ELNIVSNASCTTNCLA  160 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~-~~~~Va~p~C~~ta~~  160 (265)
                      |+++++|.+.++|+||+|||++.+++.++.++++|+|++|||++.+| .|++|||+|++++++ ..++||||||+|||++
T Consensus        78 dp~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~pa~d~~p~~V~eVN~~~i~~~~~~IIsNpsCttn~la  157 (334)
T 3cmc_O           78 DPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLA  157 (334)
T ss_dssp             SGGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTSGGGCCTTTCCEEECCCHHHHHHH
T ss_pred             ChhhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCCCccCCCEeccccCHHHhCccCCeEEECCChHHHHHH
Confidence            89999997778999999999999999999999999999999777555 689999999999984 3689999999999999


Q ss_pred             hHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeC
Q 024565          161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV  240 (265)
Q Consensus       161 ~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~  240 (265)
                      |+|+||+++|||+++.++++|++||+++.+|++ +.+++++|.+++|++|+.+|+++|+.+++|+++++++++|+|||++
T Consensus       158 p~lkpL~~~~gI~~~~mtTvha~Sg~q~~~d~~-~~~~r~~r~~a~NiiP~~tg~a~ei~kvlp~l~gkl~~~a~rVP~~  236 (334)
T 3cmc_O          158 PFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLP-HKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTP  236 (334)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCC-CSSTTTTSBTTTCCEEEECSHHHHHHHHCGGGTTTEEEEEEEESCS
T ss_pred             HHHHHHHHhcCceeeeEEEEEeccchhhhcccc-ccccccchhhhhCEEeeccCcccchhhhChhhcCcEEEEEEEECCC
Confidence            999999999999999999999999999999986 5789999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          241 DVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       241 ~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |||+.+++++++++++.|||+++|+
T Consensus       237 ~gs~~~l~~~l~k~~t~eei~~~lk  261 (334)
T 3cmc_O          237 NVSVVDLVAELEKEVTVEEVNAALK  261 (334)
T ss_dssp             SCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             CEEEEEEEEEECCCCCHHHHHHHHH
Confidence            9999999999999999999999874

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=100.00  E-value=2.3e-58  Score=407.96  Aligned_cols=259  Identities=44%  Similarity=0.743  Sum_probs=242.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC---CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~---p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+||||+|||+||+.++|+|.++   |++|+++|++. .+.++++||++||++||+|. +.+..+++ .|.++|+.+.++
T Consensus         1 ~ikVaInGfGrIGr~v~r~l~~~~~~~~~evvaInd~-~~~~~~a~ll~ydS~hg~f~-~~v~~~~~-~l~v~g~~i~v~   77 (335)
T 1obf_O            1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL-GDPKTNAHLTRYDTAHGKFP-GTVSVNGS-YMVVNGDKIRVD   77 (335)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEE
T ss_pred             CcEEEEECCCHHHHHHHHHHHhcCCCCCcEEEEEeCC-CCHHHHHHHhccCCcCCCCC-CCEEEeCC-EEEECCEEEEEE
Confidence            37999999999999999999998   89999999996 47889999999999999999 77777654 799999999998


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CCc-eEEeeeccccccCCCCeEEcCCCchh
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAP-MFVVGVNEHEYKPELNIVSNASCTTN  157 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~~-~~v~~vn~~~~~~~~~~Va~p~C~~t  157 (265)
                      +..||++++|.+.++|+||+|||.+.+++.++.++++|+|++++|+++. |+| ++|||+|++.+++..++||||+|+|+
T Consensus        78 ~~~dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviSaps~~dvp~~vV~gVN~~~~~~~~~IISNasCTTn  157 (335)
T 1obf_O           78 ANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTN  157 (335)
T ss_dssp             CCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCTTSSEECCTTTSGGGCCTTCCEEECCCHHHH
T ss_pred             EcCCcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEECCcccCCCCceEEccCCHHHhCcCccEEeCCcHHHH
Confidence            7778999999878999999999999999999999999999999998865 688 99999999999865689999999999


Q ss_pred             hhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEe
Q 024565          158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV  237 (265)
Q Consensus       158 a~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~v  237 (265)
                      +++++|+||+++|||+++.+||+|++||+|..+|++ +.+|+++|++++|++|+.+|.++++.+++|+++++++.+++||
T Consensus       158 ~Lap~lk~L~d~fGI~~~~mTTvha~T~~q~~~d~~-~~d~r~~r~~a~NiIP~~tGaakav~kVlP~L~gkltg~avRV  236 (335)
T 1obf_O          158 CLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTDVY-HEDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRV  236 (335)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSCCC-CSSTTTTSCTTTCCEEEECCHHHHHHHHCGGGTTSEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCeeEEEEEEEchhhhhhhhhccc-ccccccccchhhccccCCCcchHhHhhhccccCCceEEEEEEe
Confidence            999999999999999999999999999999999987 4689999999999999999999999999999999999999999


Q ss_pred             eeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          238 PTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       238 P~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |+++||+.+++++|+++++.||++++|+
T Consensus       237 Pv~~~s~~dl~v~lek~~t~eei~~~lk  264 (335)
T 1obf_O          237 PTINVSIVDLSFVAKRNTTVEEVNGILK  264 (335)
T ss_dssp             SCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             eccceEEEEEEEEECCCCCHHHHHHHHH
Confidence            9999999999999999999999999874

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=100.00  E-value=1.6e-58  Score=409.49  Aligned_cols=259  Identities=50%  Similarity=0.874  Sum_probs=242.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ++||||+|||+||+.++|+|.++|++++++|++. .+.++++|+++||++||+|. +.+..+++ .|.++|+.+.++++.
T Consensus         2 ~ikV~InGfGrIGr~v~r~l~~~~~~evvaInd~-~~~~~~a~ll~yDs~hG~~~-~~v~~~~~-~l~v~Gk~i~v~~~~   78 (342)
T 2ep7_A            2 AIKVGINGFGRIGRSFFRASWGREEIEIVAINDL-TDAKHLAHLLKYDSVHGIFK-GSVEAKDD-SIVVDGKEIKVFAQK   78 (342)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTCTTCEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEECSS-EEEETTEEEEEECCS
T ss_pred             ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecC-CChHHHhhhhhcccccccCC-CcEEEcCC-EEEECCEEEEEEEcC
Confidence            4899999999999999999999999999999994 47899999999999999998 77776644 799999999998777


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCc-eEEeeeccccccC-CCCeEEcCCCchhhhH
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAP-MFVVGVNEHEYKP-ELNIVSNASCTTNCLA  160 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~-~~v~~vn~~~~~~-~~~~Va~p~C~~ta~~  160 (265)
                      +|++++|.+.++|+||+|||.+.+++.++.++++|+|++++|++++|.| ++|||+|++.+++ ..++||||+|+|++++
T Consensus        79 dp~~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisaps~dvp~~vV~gVN~~~~~~~~~~IISNasCTTn~La  158 (342)
T 2ep7_A           79 DPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLA  158 (342)
T ss_dssp             SGGGCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSCCBSCSEECCTTTSGGGCCTTTCCEEECCCHHHHHHH
T ss_pred             ChhhCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCCCCCCCceEEcCcCHHHhcccCCeEEECCChHHHHHH
Confidence            8999999777999999999999999999999999999999999988899 9999999999985 4689999999999999


Q ss_pred             hHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeC
Q 024565          161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV  240 (265)
Q Consensus       161 ~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~  240 (265)
                      ++|+||+++|||+++.+||+|++|++|..+|++ +.+|+.+|++++|++|+.+|.++++.+++|+++++++.+++|||++
T Consensus       159 p~lk~L~d~fGI~~~~mTTvha~T~~q~~~d~p-~~d~r~~r~~a~NiIP~~tGaakav~kVlP~L~gkltg~avRVPv~  237 (342)
T 2ep7_A          159 PCVKVLNEAFGVEKGYMVTVHAYTNDQRLLDLP-HKDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVP  237 (342)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCC-CSSTTTTSBGGGCCEEECCCTTGGGGGTSGGGTTTEEEEEEEESCS
T ss_pred             HHHHHHHHHcCeeEEEEEEEeecccchhhhcCC-cchhhhhhhHhhCccCCCCChHHHHHHhhhccCCCEEEEEEEeccc
Confidence            999999999999999999999999999999987 5789999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEecC-CCCHHHHHHHhC
Q 024565          241 DVSVVDLTVRLEK-DASYDEIKAAIK  265 (265)
Q Consensus       241 ~G~~~~~~v~~~~-~~~~e~v~~~~~  265 (265)
                      +||+.+++++|++ +++.|||+++|+
T Consensus       238 ~~s~~dltv~lek~~~t~eei~~~lk  263 (342)
T 2ep7_A          238 DGSLIDLTVVVNKAPSSVEEVNEKFR  263 (342)
T ss_dssp             SCEEEEEEEEESSCCSCHHHHHHHHH
T ss_pred             ceEEEEEEEEEcCCCCCHHHHHHHHH
Confidence            9999999999999 999999999874

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=3.6e-58  Score=409.11  Aligned_cols=258  Identities=51%  Similarity=0.859  Sum_probs=238.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      +||||+|+||+|++++|+|.+|  |++|+++|++.. +.+.++|+++||++||+|. +.+..+++ .|.++|+.+.++++
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~-~~~~~~~ll~~ds~~g~~~-~~v~~~~~-~l~v~g~~i~v~~~   77 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLT-DTKTLAHLLKYDSVHKKFP-GKVEYTEN-SLIVDGKEIKVFAE   77 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSS-CHHHHHHHHHCCTTTCCCS-SCEEECSS-EEEETTEEEEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCC-ChHHhhhhccCcCcCCCcC-CcEEEcCC-EEEECCeEEEEEec
Confidence            5899999999999999999999  999999999953 7889999999999999998 67665544 78899998988766


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCc-eEEeeeccccccCCCCeEEcCCCchhhhH
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAP-MFVVGVNEHEYKPELNIVSNASCTTNCLA  160 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~-~~v~~vn~~~~~~~~~~Va~p~C~~ta~~  160 (265)
                      .|+++++|.+.++|+||+|||++.+++.++.++++|+|++|||++.++.| ++|||+|++++++++++||||||+|||++
T Consensus        78 ~dp~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~a~d~p~~~V~eVN~~~i~~~~~iIsNpsCttn~la  157 (332)
T 1hdg_O           78 PDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIA  157 (332)
T ss_dssp             SSGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTCCEEECCCHHHHHHH
T ss_pred             CChHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCCCCCCCceEEeccCHHHhCCCCcEEECCccHHHHHH
Confidence            78999999766899999999999999999999999999999988766788 99999999999844789999999999999


Q ss_pred             hHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeC
Q 024565          161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV  240 (265)
Q Consensus       161 ~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~  240 (265)
                      |+|+||+++|||+++.++++|++||+++.+|++ +.+++++|.+++|++|+.+|+++|+.+++|+++++++++|+|||++
T Consensus       158 p~lkpL~~~~gI~~~~~ttvha~Sg~q~~~d~~-~~~~~~~r~~a~NiiP~~tg~a~ei~kvLp~l~gkl~~~a~rVP~~  236 (332)
T 1hdg_O          158 PIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLP-HKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTP  236 (332)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCC-CSSTTTTSBGGGCCEEECCTHHHHHHHHCGGGTTTEEEEEEEESCS
T ss_pred             HHHHHHHHhcCeeEeEEEEEEeccchhhhhcCc-ccccccchhHhhCcccccCCcccchhhhCccccCCEEEEeEEcccc
Confidence            999999999999999999999999999999986 4689999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          241 DVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       241 ~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |||+.+++++++++++.|||+++|+
T Consensus       237 ~g~l~~l~~~l~k~~t~eei~~~lk  261 (332)
T 1hdg_O          237 DGSITDLTVLVEKETTVEEVNAVMK  261 (332)
T ss_dssp             SCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             CcEEEEEEEEECCCCCHHHHHHHHH
Confidence            9999999999999999999999874

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=100.00  E-value=5.9e-58  Score=409.08  Aligned_cols=265  Identities=88%  Similarity=1.344  Sum_probs=238.3

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |||+||||+|+|++|++++|+|.+||++|+++|+++..+.+.++|+++||++||+|..+.+....++.+.++|+.+.++.
T Consensus         1 mm~ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~   80 (337)
T 3e5r_O            1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFG   80 (337)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEEC
T ss_pred             CCceEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEe
Confidence            66789999999999999999999999999999999644777888999999999998512222213336889999888877


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchhhhH
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLA  160 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~  160 (265)
                      ..|+++++|...++|+||+|||++.+.+.++.++++|+|++|||++.+|.|++|||+|++++++.+++||||||++||++
T Consensus        81 ~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa~d~p~~V~gvN~~~~~~~~~iIsnpsCtt~~la  160 (337)
T 3e5r_O           81 IRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLA  160 (337)
T ss_dssp             CSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCTTCCEEECCCHHHHHHH
T ss_pred             cCChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCCCCCCEEEeccCHHHhCCCCcEEECCChHHHHHH
Confidence            66899999977789999999999999999999999999999998887778999999999999854789999999999999


Q ss_pred             hHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeC
Q 024565          161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV  240 (265)
Q Consensus       161 ~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~  240 (265)
                      |+|+||+++|||+++.++++|++||++..+|++...+++.+|.+++|++|+..++++|+.+++||++++++++++|||++
T Consensus       161 ~~lkpL~~~~gI~~~~~ttvha~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~kvlpel~gkl~~~a~rVP~~  240 (337)
T 3e5r_O          161 PLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTV  240 (337)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTCSGGGSBGGGSCEEEECCHHHHHHHHSGGGTTTEEEEEEEESCS
T ss_pred             HHHHHHHHhcCccccceeEEEeeccccccccccccccccccccHhhCccccCCCchHHHHHHHHHhCCcEEEEEEEeccC
Confidence            99999999999999999999999999999998743578889999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          241 DVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       241 ~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |||+.+++++|+++++.|||+++|+
T Consensus       241 ~g~~~~l~~~l~k~~t~eei~~~~~  265 (337)
T 3e5r_O          241 DVSVVDLTVRIEKAASYDAIKSAIK  265 (337)
T ss_dssp             SCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             CeEEEEEEEEECCCccHHHHHHHHH
Confidence            9999999999999999999999874

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=100.00  E-value=3.8e-58  Score=410.87  Aligned_cols=263  Identities=66%  Similarity=1.055  Sum_probs=237.1

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+|+||||+|+|++|++++|+|.+||++|+++|+++..+...++|+++||++||+|. +.+..+++ .+.++|+.+.+++
T Consensus        15 ~~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~-~~v~~~~~-~l~v~g~~i~v~~   92 (354)
T 3cps_A           15 YFQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFN-GTVEVSGK-DLCINGKVVKVFQ   92 (354)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCS-SCEEECC--CEEETTEEEEEEC
T ss_pred             CcceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCC-CcEEEeCC-EEEECCeEEEEEe
Confidence            357899999999999999999999999999999995557888899999999999998 76655544 6889999998887


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccCC-CCeEEcCCCchhh
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPE-LNIVSNASCTTNC  158 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~~-~~~Va~p~C~~ta  158 (265)
                      ..||++++|.+.++|+||+|||++.+++.++.++++|+|++|||++.++ .|++|||+|++++++. .++||||||++||
T Consensus        93 ~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~padd~~p~~V~GVN~~~~~~~~~~IISNpsCtTn~  172 (354)
T 3cps_A           93 AKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNC  172 (354)
T ss_dssp             CSCGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSCCCBCCTTTTGGGCCTTTCSEEECCCHHHHH
T ss_pred             cCChHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCCCCCCCCEEEeccCHHHhCcCCCcEEECCCcHHHH
Confidence            6789999997678999999999999999999999999999999777544 7899999999999853 6899999999999


Q ss_pred             hHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCC--CcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEE
Q 024565          159 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSS--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFR  236 (265)
Q Consensus       159 ~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~--~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~  236 (265)
                      ++|+|+||+++|||+++.+|++|++||++..+|++..  .+++.+|.+++|++|+..|+++|+.+++|+++++++++++|
T Consensus       173 lap~lkpL~~~~gI~~g~mtTvha~Tg~q~~vd~~~~~~k~~r~~r~aa~NiiP~~tG~akei~kvlp~l~gkl~~~a~r  252 (354)
T 3cps_A          173 LAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIR  252 (354)
T ss_dssp             HHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSSCCCCC--CCGGGSCTTSCCEEEECCHHHHHHHHSGGGTTTEEEEEEE
T ss_pred             HHHHHHHHHHhCCeeEEEEEEEecccccchhhhccchhccccccccchhccEEecCcCHHHHHHHHHHhcCCcEEEEEEE
Confidence            9999999999999999999999999999999998631  56777889999999999999999999999999999999999


Q ss_pred             eeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          237 VPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       237 vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ||++|||+.+++++|+++++.|||+++|+
T Consensus       253 VP~~~gs~~dl~~~l~k~~t~eeI~~~~k  281 (354)
T 3cps_A          253 VPTPDVSVVDLTCKLAKPASIEEIYQAVK  281 (354)
T ss_dssp             ESCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             eccCCEEEEEEEEEECCCCCHHHHHHHHH
Confidence            99999999999999999999999999874

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=100.00  E-value=2e-58  Score=408.02  Aligned_cols=258  Identities=48%  Similarity=0.833  Sum_probs=242.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ++||||+|||+||+.++|+|.++ ++++++|++. .+.++++|+|+|||+||+|. ++++.+++ .|.++|+.+.+++..
T Consensus        21 ~~kVaInGfGrIGr~vlr~l~e~-~~~ivaIndl-~d~~~~a~llkydS~hG~f~-~~v~~~~~-~l~i~Gk~I~v~~~~   96 (356)
T 3hja_A           21 SMKLAINGFGRIGRNVFKIAFER-GIDIVAINDL-TDPKTLAHLLKYDSTFGVYN-KKVESRDG-AIVVDGREIKIIAER   96 (356)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT-TCEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             CeEEEEECCCHHHHHHHHHHHHC-CCCEEEEeCC-CCHHHhhhhhccccCCCCCC-CCEEEcCC-EEEECCEEEEEEEcC
Confidence            58999999999999999999998 7999999998 48899999999999999998 77665554 899999999999878


Q ss_pred             CCCCCCcccccccEEEEecCCccc----HHhHHHHHh-CCCCeEEEcCCCCC-CceEEeeeccccccCCCCeEEcCCCch
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTD----KDKAAAHLK-GGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTT  156 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~----~~~~~~~~~-~G~~~vvis~~~~~-~~~~v~~vn~~~~~~~~~~Va~p~C~~  156 (265)
                      ||++++|.+.++|+||+|||.+.+    ++.++.+++ +|+|+||||+++.| +|++|||+|++.+++..++||||+|++
T Consensus        97 dp~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps~d~vp~vV~gVN~~~~~~~~~IISNaSCTT  176 (356)
T 3hja_A           97 DPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTT  176 (356)
T ss_dssp             SGGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCCSSCCEECCTTTSGGGCCTTCCEEECCCHHH
T ss_pred             ChhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCCCCCCCEEeccCCHHHcCcCccEEECCccch
Confidence            999999988899999999999999    999999999 99999999988654 699999999999987678999999999


Q ss_pred             hhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEE
Q 024565          157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFR  236 (265)
Q Consensus       157 ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~  236 (265)
                      ++++++|+||+++|||+++.+|++|++|++|+.+|+|+ ++|+++|.+++|++|+.+|.++++.+++|+++++++.+++|
T Consensus       177 n~Lap~lkvL~d~fGI~~g~mTTvhA~T~~Q~~~D~p~-kd~r~~r~aa~NIIP~~tGaakav~kVlPeL~gkltg~avR  255 (356)
T 3hja_A          177 NCLAPLAKVLHESFGIEQGLMTTVHAYTNDQRILDLPH-SDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMR  255 (356)
T ss_dssp             HHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBTTTSCEEEECCTTTTHHHHCGGGTTTEEEEEEE
T ss_pred             hhhhHhHHHHHHhcCeEEEEEEEEEecccccccccCcc-cccccccccccEEEcCCCchHHHHHHhccccCCcEEEEEEE
Confidence            99999999999999999999999999999999999875 79999999999999999999999999999999999999999


Q ss_pred             eeeCceEEEEEEEEe-cCCCCHHHHHHHhC
Q 024565          237 VPTVDVSVVDLTVRL-EKDASYDEIKAAIK  265 (265)
Q Consensus       237 vP~~~G~~~~~~v~~-~~~~~~e~v~~~~~  265 (265)
                      ||+++||+.+++++| +++++.|||+++|+
T Consensus       256 VPv~~~s~~dlt~~l~ek~~t~eeI~~~lk  285 (356)
T 3hja_A          256 VPVPTGSIVDLTVQLKKKDVTKEEINSVLR  285 (356)
T ss_dssp             ESCSSCEEEEEEEEESCTTCCHHHHHHHHH
T ss_pred             cCCCccEeEEEEEEEccCCCCHHHHHHHHH
Confidence            999999999999999 99999999999874

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=100.00  E-value=5.8e-57  Score=401.16  Aligned_cols=260  Identities=49%  Similarity=0.804  Sum_probs=238.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+||||+|+|++|++++|+|.+|  |++|+++|+|. .+.++++|+++||+.||+|. +.+....++.+.++|+.+.++.
T Consensus         1 ~ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~-~~~~~~a~ll~sds~~G~~~-~~v~~~~~~~l~v~g~~i~v~~   78 (337)
T 1rm4_O            1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT-GGVKQASHLLKYDSILGTFD-ADVKTAGDSAISVDGKVIKVVS   78 (337)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECT-TCHHHHHHHHHCCTTTCSCS-SCEEECTTSEEEETTEEEEEEC
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcC-CCHHHHHHHhcccccCCCcc-ceeEEecCCeEEECCeEEEEEe
Confidence            48999999999999999999999  99999999995 48899999999999999998 6655222336889999999988


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccCCCCeEEcCCCchhhh
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCL  159 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~  159 (265)
                      ..|+++++|.+.++|+||+|||++.+++.++.++++|+|++++|++..+ .|++|||+|++.+++..++||||||+|+|+
T Consensus        79 ~~dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~r~d~p~~V~GVN~~~~~~~~~IIsNasCtTn~l  158 (337)
T 1rm4_O           79 DRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCL  158 (337)
T ss_dssp             CSCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCCBCCTTTTGGGCCTTCSEEECCCHHHHHH
T ss_pred             cCChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEECCcccCCCCeEeecCCHHHhCCCCeEEECCChHHHHH
Confidence            7889999996568999999999999999999999999999999998544 789999999999985478999999999999


Q ss_pred             HhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565          160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT  239 (265)
Q Consensus       160 ~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~  239 (265)
                      +|+|+||+++|||+++.+|++|++||++++.|++ +.+|+.+|.+++|++|+..+..+.+.+++||++++++++++|||+
T Consensus       159 ap~lk~L~~~fgI~~~~mtTvha~Tgaq~l~d~~-~~~~r~~r~~a~NiiP~~tgaakav~kvlPel~gkl~~~a~RVP~  237 (337)
T 1rm4_O          159 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT  237 (337)
T ss_dssp             HHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCC-CSSTTTTSCTTTCCEEECCCHHHHHHHHCGGGTTTEEEEEEEESC
T ss_pred             HHHHHHHHHhcCeeEEEEEEEEecCCccchhhcc-hhhhccchhhhcCcccccchhhHHHHhhhhhhcCcEEEEEEEecC
Confidence            9999999999999999999999999998888875 578999999999999999998889999999999999999999999


Q ss_pred             CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          240 VDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       240 ~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++||+.+++++++++++.|||+++|+
T Consensus       238 ~~gs~~dl~~~l~k~~t~eei~~~lk  263 (337)
T 1rm4_O          238 PNVSVVDLVVQVSKKTFAEEVNAAFR  263 (337)
T ss_dssp             SSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             CCEEEEEEEEEECCCCCHHHHHHHHH
Confidence            99999999999999999999999874

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=100.00  E-value=1.3e-56  Score=403.35  Aligned_cols=259  Identities=45%  Similarity=0.800  Sum_probs=239.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+||||+|+|++|++++|+|.+|  |++|+++|++. .+.++++|+++||++||+|. +.+..+++ .|.++|+.+.++.
T Consensus         2 ~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~-~d~~~~a~ll~yds~~G~~~-~~v~~~~~-~l~v~g~~i~v~~   78 (380)
T 2d2i_A            2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT-SDARTAAHLLEYDSVLGRFN-ADISYDEN-SITVNGKTMKIVC   78 (380)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECS-SCHHHHHHHHHCCTTTCCCC-SCEEEETT-EEEETTEEEEEEC
T ss_pred             CcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecC-CCHHHHHHhhcccccCCCCC-CcEEEeCC-eEEECCeEEEEEe
Confidence            58999999999999999999999  99999999996 37889999999999999998 77666555 6889999999887


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-Cc-eEEeeeccccccC-CCCeEEcCCCchh
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-AP-MFVVGVNEHEYKP-ELNIVSNASCTTN  157 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~-~~v~~vn~~~~~~-~~~~Va~p~C~~t  157 (265)
                      ..||++++|.+.++|+||+|||++.+++.++.++++|+|+||||+...+ .| ++|||+|++.+++ ..++||||||+|+
T Consensus        79 ~~dp~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps~d~~p~~~V~GVN~e~~~~~~~~IVSNasCtTn  158 (380)
T 2d2i_A           79 DRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTN  158 (380)
T ss_dssp             CSCGGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGGCCTTTCSEEECCCHHHH
T ss_pred             cCChHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCCCCCCCceEEcccCHHHhcccCCcEEECCchHHH
Confidence            7789999997668999999999999999999999999999999887555 67 9999999999986 3589999999999


Q ss_pred             hhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEe
Q 024565          158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV  237 (265)
Q Consensus       158 a~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~v  237 (265)
                      |++|+|+||+++|||+++.+|++|++||+++++|++ +.+|+.+|.+++|++|+.+++++.+++++||++++++++++||
T Consensus       159 ~lap~lk~L~d~fgI~~g~mTTvha~Tg~q~~vD~~-~~d~r~gR~aa~NiIP~~Tgaakav~kvlPeL~gkl~g~avRV  237 (380)
T 2d2i_A          159 CLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDAS-HRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRV  237 (380)
T ss_dssp             HHHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCC-CSSTTTTSCGGGCCEEEECCHHHHHHHHCGGGTTTEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCeeEEEEEEEeeccccchhhccc-hhhhhhcchHhhCeEeccCchHHHHHhhhHhhhCcEEEEEEEe
Confidence            999999999999999999999999999999999987 4789999999999999999999999999999999999999999


Q ss_pred             eeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          238 PTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       238 P~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |+++||+.+++++|+++++.|||+++|+
T Consensus       238 Pt~~gs~~dlt~~l~k~~t~eeI~~~lk  265 (380)
T 2d2i_A          238 PTPNVSVVDLVVQVEKPTITEQVNEVLQ  265 (380)
T ss_dssp             SCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             ccCCEEEEEEEEEECCcCCHHHHHHHHH
Confidence            9999999999999999999999999874

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=100.00  E-value=1.1e-56  Score=398.69  Aligned_cols=257  Identities=51%  Similarity=0.813  Sum_probs=238.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN   83 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   83 (265)
                      +||||+|+|++|++++|+|.+| ++++++|++. .+.++++|+++||++||+|. +++...++ .+.++|+.+.+++..|
T Consensus         1 ikVgInG~G~IGr~vlr~l~~~-~~evvaind~-~~~~~~a~ll~~ds~~G~~~-~~v~~~~~-~l~v~g~~i~v~~~~d   76 (331)
T 2g82_O            1 MKVGINGFGRIGRQVFRILHSR-GVEVALINDL-TDNKTLAHLLKYDSIYHRFP-GEVAYDDQ-YLYVDGKAIRATAVKD   76 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECS-SCHHHHHHHHHCCTTTCSCS-SCEEECSS-EEEETTEEEEEECCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCEEEEEecC-CCHHHHhHhhhccccCCCCC-ceEEEcCC-EEEECCEEEEEEecCC
Confidence            5899999999999999999999 8999999995 48899999999999999998 77665544 7889999999886668


Q ss_pred             CCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccC-CCCeEEcCCCchhhhHh
Q 024565           84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKP-ELNIVSNASCTTNCLAP  161 (265)
Q Consensus        84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~-~~~~Va~p~C~~ta~~~  161 (265)
                      |++++|.+.++|+||+|||.+.+++.++.++++|+|++|||+++.+ .|++|||+|++.+++ ..++|+||||+|+|++|
T Consensus        77 p~~l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps~d~~p~vV~gVN~~~~~~~~~~IIsnasCtTn~lap  156 (331)
T 2g82_O           77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAP  156 (331)
T ss_dssp             GGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTTCCEEECCCHHHHHHHH
T ss_pred             hhhCcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCCcCCCCEEeeccCHHHhCcCCCCEEECCChHHHHHHH
Confidence            9999997778999999999999999999999999999999888655 789999999999985 36899999999999999


Q ss_pred             HHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeCc
Q 024565          162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD  241 (265)
Q Consensus       162 ~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~~  241 (265)
                      +|+||+++|||+++.+|++|++||+|+.+|++ +.+|+++|.+++|++|+..|..+++.+++|+++++++++++|||+++
T Consensus       157 ~lk~L~~~fgI~~~~mtTvha~Tg~q~~~d~~-~~d~r~~r~~a~NiIP~~tGaakav~kIlp~L~gkl~g~a~RVPv~~  235 (331)
T 2g82_O          157 VMKVLEEAFGVEKALMTTVHSYTNDQRLLDLP-HKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT  235 (331)
T ss_dssp             HHHHHHHHTCEEEEEEEEEEECCTTSBSSSCC-CSSTTTTSBGGGCCEEECCCHHHHHTTTCGGGTTSEEEEEEEESCSS
T ss_pred             HHHHHHHhcCccEEEEEEEeecccccchhccc-cccccccchhhhCccccCCCchhhhhhhHHhcCCCEEEEEEEeCCCC
Confidence            99999999999999999999999999999976 57899999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEecCCCCHHHHHHHhC
Q 024565          242 VSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       242 G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ||+.+++++|+++++.|||+++|+
T Consensus       236 gs~~dl~v~l~k~~t~eei~~~lk  259 (331)
T 2g82_O          236 GSISDITALLKREVTAEEVNAALK  259 (331)
T ss_dssp             CEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             EEEEEEEEEECCCCCHHHHHHHHH
Confidence            999999999999999999999874

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=100.00  E-value=7e-56  Score=395.41  Aligned_cols=259  Identities=45%  Similarity=0.800  Sum_probs=239.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+||||+|+|++|++++|+|.+|  |++|+++|++.. +.++++|+++||++||+|. +.+..+++ .+.++|+.+.++.
T Consensus         2 ~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~-~~~~~~~l~~~ds~~G~~~-~~v~~~~~-~l~v~g~~i~v~~   78 (339)
T 3b1j_A            2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTS-DARTAAHLLEYDSVLGRFN-ADISYDEN-SITVNGKTMKIVC   78 (339)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSS-CHHHHHHHHHCCTTTCCCC-SCEEEETT-EEEETTEEEEEEC
T ss_pred             ceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCC-CHHHHHHHhccccccCCCC-CcEEEcCC-eeeecCceEEEEe
Confidence            58999999999999999999999  999999999873 7889999999999999998 77665554 6889999898887


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-Cc-eEEeeeccccccC-CCCeEEcCCCchh
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-AP-MFVVGVNEHEYKP-ELNIVSNASCTTN  157 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~-~~v~~vn~~~~~~-~~~~Va~p~C~~t  157 (265)
                      ..||++++|.+.++|+||+|||++.+++.++.++++|+|+||||+++.+ .| ++|||+|++.+++ ..++||||||+|+
T Consensus        79 ~~dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~~~~p~~~V~gVN~~~~~~~~~~IISnasCtTn  158 (339)
T 3b1j_A           79 DRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTN  158 (339)
T ss_dssp             CSCGGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGGCCTTTCSEEECCCHHHH
T ss_pred             cCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCCCCCCeeEEcccCHHHhCcCCCeEEECCcchhh
Confidence            7789999997678999999999999999999999999999999877555 67 9999999999985 3689999999999


Q ss_pred             hhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEe
Q 024565          158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV  237 (265)
Q Consensus       158 a~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~v  237 (265)
                      |++|+|+||+++|||+++.++++|++||+++.+|++ +.+|+.+|.+++|++|+.+++.+.+.+++|+++++++++++||
T Consensus       159 ~lap~lk~L~~~fgI~~~~~tTvha~Tg~q~~vd~~-~~d~r~~r~a~~NiiP~~tgaakav~kVlpeL~gkl~g~a~rV  237 (339)
T 3b1j_A          159 CLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDAS-HRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRV  237 (339)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSSCC-CSSTTTTSCTTSCCEEEECSHHHHHHHHCGGGTTTEEEEEEEE
T ss_pred             HHHHHHHHHHHhCCeeEEEEEEEEeecCCchhcccc-hhhhhccccHHHceEcccCchHHHHHHHhHhhcCcEEEEEEEe
Confidence            999999999999999999999999999999999987 4689999999999999999999999999999999999999999


Q ss_pred             eeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          238 PTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       238 P~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |+++||+.+++++|+++++.|||+++|+
T Consensus       238 P~~~g~~~dl~v~l~k~~t~eeI~~~lk  265 (339)
T 3b1j_A          238 PTPNVSVVDLVVQVEKPTITEQVNEVLQ  265 (339)
T ss_dssp             SCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             ccCCEEEEEEEEEEcCcCCHHHHHHHHH
Confidence            9999999999999999999999999874

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=100.00  E-value=3.2e-56  Score=397.91  Aligned_cols=259  Identities=38%  Similarity=0.702  Sum_probs=228.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHc---CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~---~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      ++||||+|+|++|++++|+|.+   ||++|+++|++. .+.+.++|+++||++||+|. +++..+++ .+.++|+.+.++
T Consensus         2 ~ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~-~~~~~~~~ll~~ds~~g~~~-~~v~~~~~-~l~v~g~~i~v~   78 (339)
T 2x5j_O            2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINEL-ADAAGMAHLLKYDTSHGRFA-WEVRQERD-QLFVGDDAIRVL   78 (339)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECS-SCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEE
T ss_pred             CeEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCC-CCHHHHHHHhcccccCCCCC-ceEEEcCC-eeEECCEEEEEE
Confidence            5899999999999999999999   999999999986 37788999999999999998 66665544 788999988887


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCC-CCCc-eEEeeeccccccCCCCeEEcCCCchh
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAP-MFVVGVNEHEYKPELNIVSNASCTTN  157 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~-~~~~-~~v~~vn~~~~~~~~~~Va~p~C~~t  157 (265)
                      +..||++++|.+.++|+||+|||++.+++.++.++++|+|++|||++. .|.| ++|||+|++++++..++||||||+||
T Consensus        79 ~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~ad~d~p~~~V~gvN~~~~~~~~~iIsnpsCttn  158 (339)
T 2x5j_O           79 HERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTN  158 (339)
T ss_dssp             CCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCCTTSSEECCTTTSGGGCCTTCCEEECCCHHHH
T ss_pred             ecCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccccCCCCceeecccCHHHhcCCCCEEECCCcHHH
Confidence            667888899965589999999999999999999999999999997764 5677 99999999999854689999999999


Q ss_pred             hhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEe
Q 024565          158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV  237 (265)
Q Consensus       158 a~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~v  237 (265)
                      |++|+|+||+++|||+++.++++|++||+++.+|++ +.+|+++|.+++|++|+.+|+++++.+++|+++++++++++||
T Consensus       159 ~lap~lkpL~~~~gI~~~~~ttvha~Tg~q~~~d~~-~~d~r~~r~a~~NiiP~~tg~a~ei~kvlp~l~gkl~~~a~rV  237 (339)
T 2x5j_O          159 CIIPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAY-HPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV  237 (339)
T ss_dssp             HHHHHHHHHHHHHCEEEEEEEEEECCC------------CTTTTSCCCCCCEEECCCHHHHHHHHSGGGTTSEEEEEEEC
T ss_pred             HHHHHHHHHHHccCcceeeEEEEEeccccccccccc-cccccchhhHHhCcccccCChHHHHHHHHHHhcCcEEEEEEEe
Confidence            999999999999999999999999999999888875 4678999999999999999999999999999999999999999


Q ss_pred             eeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          238 PTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       238 P~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |+++||+.+++++++++++.|||+++|+
T Consensus       238 P~~~g~~~~l~v~l~k~~t~eei~~~lk  265 (339)
T 2x5j_O          238 PTINVTAIDLSVTVKKPVKANEVNLLLQ  265 (339)
T ss_dssp             SSCSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             cccCcEEEEEEEEECCCCCHHHHHHHHH
Confidence            9999999999999999999999999874

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=5.6e-45  Score=326.17  Aligned_cols=235  Identities=22%  Similarity=0.253  Sum_probs=199.9

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeec--ccCCcc--cccce-eeeCCceEEECCEEE
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYD--SVHGQW--KHHEL-KVKDDKTLLFGEKPV   76 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~-~~~~~~~l~~~g~~~   76 (265)
                      ||+||||+|+|++|+.++|+|.+||++++++|++.  +.++.+|+++||  ++|++|  . +.+ ...++ .+.+++   
T Consensus         1 MmikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~--~~~~~~~l~~~dg~s~~g~~~~~-~~v~~~~~~-~l~v~~---   73 (343)
T 2yyy_A            1 MPAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKT--KPDFEARLAVEKGYKLFVAIPDN-ERVKLFEDA-GIPVEG---   73 (343)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEES--SCSHHHHHHHHTTCCEEESSCCH-HHHHHHHHT-TCCCCC---
T ss_pred             CceEEEEECCCHHHHHHHHHHHhCCCceEEEEecC--CHHHHHHHHHhcCCccccccCCC-ceeecccCC-eEEECC---
Confidence            15899999999999999999999999999999996  367778899999  989988  3 222 11111 232222   


Q ss_pred             EEEecCCCCCCCcccccccEEEEecCCcccHHhHH-HHHhCCCCeEEEcCCCC-C-Cc-eEEeeeccccccCCCCeEEcC
Q 024565           77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAA-AHLKGGAKKVIISAPSK-D-AP-MFVVGVNEHEYKPELNIVSNA  152 (265)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~-~~~~~G~~~vvis~~~~-~-~~-~~v~~vn~~~~~~~~~~Va~p  152 (265)
                            +++++.|   ++|+||+|||.+.+.+.++ .++++|+ +|++|++.. + .| ++|||+|++++++ .++|+||
T Consensus        74 ------~~~~~~~---~vDiV~eatg~~~s~~~a~~~~l~aG~-~VI~sap~~~d~vp~~vV~gvN~~~~~~-~~iIsn~  142 (343)
T 2yyy_A           74 ------TILDIIE---DADIVVDGAPKKIGKQNLENIYKPHKV-KAILQGGEKAKDVEDNFNALWSYNRCYG-KDYVRVV  142 (343)
T ss_dssp             ------BGGGTGG---GCSEEEECCCTTHHHHHHHHTTTTTTC-EEEECTTSCGGGSSEEECTTTTHHHHTT-CSEEEEC
T ss_pred             ------chHHhcc---CCCEEEECCCccccHHHHHHHHHHCCC-EEEECCCccccCCCceEEcccCHHHhcc-CCEEecc
Confidence                  3444433   7999999999999999996 9999996 466777754 4 78 9999999999985 7899999


Q ss_pred             CCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeec----CCChhhHHHhhccCCCC
Q 024565          153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPS----STGAAKAVGKVLPALNG  228 (265)
Q Consensus       153 ~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~----~~~~~~~~~~~l~e~~~  228 (265)
                      +|++++++++|+||+++|||+++.++++|++||.+           +.+|.+++|++|+    .+|+++++.+++|++++
T Consensus       143 sCtT~~lap~lk~L~~~fgI~~~~vtT~~a~sg~~-----------~~~r~~~~NiiP~~i~~~tg~~k~~~kilp~l~g  211 (343)
T 2yyy_A          143 SCNTTGLCRILYAINSIADIKKARIVLVRRAADPN-----------DDKTGPVNAITPNPVTVPSHHGPDVVSVVPEFEG  211 (343)
T ss_dssp             CHHHHHHHHHHHHHHTTSEEEEEEEEEEEESSCTT-----------CSSCCCSSCCEESSSSSSCTHHHHHHHHCGGGTT
T ss_pred             chhhHHHHHHHHHHHHHcCceEEEEEeeeeccCcC-----------cchhhHHhcccCCCCCCCCcchHHHHHhhhcccc
Confidence            99999999999999999999999999999999721           3456899999999    88999999999999999


Q ss_pred             ceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          229 KLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       229 ~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      +++.+++|||+++||+.+++++|+++++.||++++|+
T Consensus       212 kl~~~avRVPv~~gh~~~l~v~l~~~~t~eei~~~l~  248 (343)
T 2yyy_A          212 KILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIK  248 (343)
T ss_dssp             SEEEEEEEESCSSCEEEEEEEEEESCCCHHHHHHHHH
T ss_pred             ceeeEEEEecccceEEEEEEEEECCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999874

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=100.00  E-value=3.7e-43  Score=314.32  Aligned_cols=234  Identities=21%  Similarity=0.238  Sum_probs=179.3

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEE
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT   77 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~   77 (265)
                      |+|+||||+|+ |++|++++|+|.+|  |++|+++++++...+.                          .+.++++.+.
T Consensus         1 ~~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~--------------------------~~~~~~~~i~   54 (336)
T 2r00_A            1 SQQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGK--------------------------TYRFNGKTVR   54 (336)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTC--------------------------EEEETTEEEE
T ss_pred             CCccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCC--------------------------ceeecCceeE
Confidence            45799999997 99999999999999  8999999997532221                          2334455555


Q ss_pred             EEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccC--CCCeEEcC
Q 024565           78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKP--ELNIVSNA  152 (265)
Q Consensus        78 ~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~--~~~~Va~p  152 (265)
                      +.. .+++  +|  .++|+||+|+|++.+.+.++.++++|++.+.+|++   +++.|.++||+|+++++.  .+++|+||
T Consensus        55 ~~~-~~~~--~~--~~vDvVf~a~g~~~s~~~a~~~~~~G~~vId~s~~~R~~~~~~~~vpevN~~~i~~~~~~~iIanp  129 (336)
T 2r00_A           55 VQN-VEEF--DW--SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNRNIIANP  129 (336)
T ss_dssp             EEE-GGGC--CG--GGCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGGGGGTTEEECC
T ss_pred             Eec-CChH--Hh--cCCCEEEECCCchHHHHHHHHHHHcCCEEEEcCCccccCCCCCeEeccCCHHHhccccCCcEEECC
Confidence            532 3443  46  57999999999999999999999999954445776   345789999999999984  26799999


Q ss_pred             CCchhhhHhHHHHHHHhcCceEEEEEEEeecccccc-ccCCCCC-----------CcccCCccCCCceeecCC-----Ch
Q 024565          153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGPSS-----------KDWRGGRAASFNIIPSST-----GA  215 (265)
Q Consensus       153 ~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~-~~d~~~~-----------~~~~~~~~~a~n~~p~~~-----~~  215 (265)
                      |||+|+++++|+||+++|+|+++.++++|++||+++ ..+.+..           .++++++.+++|++|+.+     +|
T Consensus       130 ~C~tt~~~~~l~pL~~~~~i~~~~vtt~~~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh  209 (336)
T 2r00_A          130 NCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQIAFNCIPQIDQFMDNGY  209 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHCEEEEEEEEEEESSSCCTTSCC-----------------------------CCBCTTTCSSC
T ss_pred             ChHHHHHHHHHHHHHHhCCccEEEEEEEEecccCChhhhHHHHHHHHHhhcCCCCCccccchhhhcCcccccCCcccCCc
Confidence            999999999999999999999999999999999964 5555321           256778889999999874     66


Q ss_pred             hhH-------HHhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          216 AKA-------VGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       216 ~~~-------~~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      .+|       ..+++|+.+++++|+|+|||++|||+.++|++++++++.||++++|+
T Consensus       210 ~~Ee~k~~~e~~kil~~~~~~v~~t~~rVP~~~g~~~~~~~~l~~~~t~~ei~~~~~  266 (336)
T 2r00_A          210 TKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYGHAEAVHVETRAPIDAEQVMDMLE  266 (336)
T ss_dssp             BHHHHHHHHHHHHHTTCTTCEEEEEEEEESSCBSEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCCcEEEEeEEeccCcEEEEEEEEEeCCCCCHHHHHHHHH
Confidence            544       46677888889999999999999999999999999999999999874

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=100.00  E-value=7.1e-42  Score=305.33  Aligned_cols=228  Identities=23%  Similarity=0.335  Sum_probs=188.4

Q ss_pred             cEEEEEcc-ChhHHHHHHHHH--cCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            4 VKIGINGF-GRIGRLVARVIL--QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~--~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      +||||+|+ |++|++++|+|.  +||.+++..+.+..                          ..|+.+.++|+.+.+..
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~--------------------------~~g~~l~~~g~~i~v~~   54 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPR--------------------------SAGVRLAFRGEEIPVEP   54 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGG--------------------------GSSCEEEETTEEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccc--------------------------cCCCEEEEcCceEEEEe
Confidence            48999997 999999999999  78877765544321                          11234667777777764


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccCCCCeEEcCCCchh
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKPELNIVSNASCTTN  157 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~t  157 (265)
                      . +++  +|   ++|+||+|+|++.++++++.++++|++.+.+|++   .++.|.++||+|+++++...++|+|||||+|
T Consensus        55 ~-~~~--~~---~~DvV~~a~g~~~s~~~a~~~~~~G~~vId~s~~~R~~~~~~~~vpevN~~~i~~~~~iIanp~C~tt  128 (331)
T 2yv3_A           55 L-PEG--PL---PVDLVLASAGGGISRAKALVWAEGGALVVDNSSAWRYEPWVPLVVPEVNREKIFQHRGIIANPNCTTA  128 (331)
T ss_dssp             C-CSS--CC---CCSEEEECSHHHHHHHHHHHHHHTTCEEEECSSSSTTCTTSCBCCTTSCGGGGGGCSSEEECCCHHHH
T ss_pred             C-Chh--hc---CCCEEEECCCccchHHHHHHHHHCCCEEEECCCccccCCCCCEEEcCcCHHHhcCCCCEEECCCHHHH
Confidence            3 444  47   6999999999999999999999999965555776   3467899999999999853579999999999


Q ss_pred             hhHhHHHHHHHhcCceEEEEEEEeecccc------------ccccCCCCCCcccCCccCCCceeecC-----CChhhH--
Q 024565          158 CLAPLAKVIHDKFGIVEGLMTTVHSITAT------------QKTVDGPSSKDWRGGRAASFNIIPSS-----TGAAKA--  218 (265)
Q Consensus       158 a~~~~L~pL~~~~~i~~~~v~~v~~~sg~------------~~~~d~~~~~~~~~~~~~a~n~~p~~-----~~~~~~--  218 (265)
                      +++++|+||+++|+|+++.++++|++||+            +...|++...++++++.+++|++|+.     |+|.+|  
T Consensus       129 ~~~~~l~pL~~~~~I~~~~vtt~~~~SgaG~~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiP~~~~~~~~~ht~e~~  208 (331)
T 2yv3_A          129 ILAMALWPLHRAFQAKRVIVATYQAASGAGAKAMEELLTETHRFLHGEAPKAEAFAHPLPFNVIPHIDAFQENGYTREEM  208 (331)
T ss_dssp             HHHHHHHHHHHHHCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHHTSSCCCCCSSSSCCTTCCBSCCSCBCTTSCBHHHH
T ss_pred             HHHHHHHHHHHhCCceEEEEEEEeecccCCcchhHHHHHHHHhhhcCccccccccchhhhcCcccccCccccCCCcHHHH
Confidence            99999999999999999999999999998            44456554467888999999999987     455555  


Q ss_pred             -H----Hhhc--cCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          219 -V----GKVL--PALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       219 -~----~~~l--~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                       +    .+++  |++  +++|+|+|||++|||+.+++++++++++.||++++|+
T Consensus       209 ~i~~e~~kil~~~~l--~v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~  260 (331)
T 2yv3_A          209 KVVWETHKIFGDDTI--RISATAVRVPTLRAHAEAVSVEFARPVTPEAAREVLK  260 (331)
T ss_dssp             HHHHHHHHHTTCTTC--EEEEECCBCSCSSEEEEEEEEEESSCCCHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCc--eEEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHH
Confidence             4    6676  666  4999999999999999999999999999999999985

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=1.1e-41  Score=305.27  Aligned_cols=231  Identities=13%  Similarity=0.155  Sum_probs=187.7

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHH--cCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            3 KVKIGINGF-GRIGRLVARVIL--QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~--~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      ++||+|+|+ |++|++++|+|.  +||.+++++++++...+.                          .+.++|..+.+.
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~--------------------------~~~~~g~~i~~~   59 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ--------------------------RMGFAESSLRVG   59 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC--------------------------EEEETTEEEECE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCC--------------------------ccccCCcceEEe
Confidence            589999998 999999999999  889999999987632221                          123344444443


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCC--CCCceEEeeeccccccCCC---CeEEcCCC
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS--KDAPMFVVGVNEHEYKPEL---NIVSNASC  154 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~--~~~~~~v~~vn~~~~~~~~---~~Va~p~C  154 (265)
                      . .+++.  |  .++|+||+|+|++.+.+.++.++++|++.+++|++.  ++.|..++++|+++++. +   ++|+||||
T Consensus        60 ~-~~~~~--~--~~~DvV~~a~g~~~s~~~a~~~~~aG~kvId~Sa~~rd~~~~~~vpevN~~~i~~-~~~~~iIanp~C  133 (340)
T 2hjs_A           60 D-VDSFD--F--SSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSVAPPVMVSVNAERLAS-QAAPFLLSSPCA  133 (340)
T ss_dssp             E-GGGCC--G--GGCSEEEECSCHHHHHHHHHHHHHTTCEEEETTCTTTTTTSCBCCHHHHGGGGGG-SCSSCEEECCCH
T ss_pred             c-CCHHH--h--cCCCEEEEcCCcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCeEEcCcCHHHHhc-CcCCCEEEcCCH
Confidence            2 34433  5  579999999999999999999999999755567773  34678888999999985 4   79999999


Q ss_pred             chhhhHhHHHHHHHhcCceEEEEEEEeeccccccc-cCCC-----------CCCcccCCccCCCceeecCC-----Chhh
Q 024565          155 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-VDGP-----------SSKDWRGGRAASFNIIPSST-----GAAK  217 (265)
Q Consensus       155 ~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~-~d~~-----------~~~~~~~~~~~a~n~~p~~~-----~~~~  217 (265)
                      |+|+++++|+||+++|+|+++.++++|++||+++. .+.+           ......+++.+++|++||..     +|.+
T Consensus       134 ~tt~~~~~l~pL~~~~~i~~~~v~t~~~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~  213 (340)
T 2hjs_A          134 VAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHSA  213 (340)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEEEEEEECGGGGCHHHHHHHHHHHHHHHTTCCCCCSSSSSCCTTCCBSSSSCBCTTSCBH
T ss_pred             HHHHHHHHHHHHHHhcCcceEEEEEecccCCCCccccHhHHHHHHHHhccCCccccccchhhccCeeccccCcccCCccH
Confidence            99999999999999999999999999999998653 4431           01234567788999999975     7666


Q ss_pred             H-------HHhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          218 A-------VGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       218 ~-------~~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |       ..+++|+++++++|+|+|||++|||+.++|++|+++++.||++++|+
T Consensus       214 Ee~k~~~~~~kil~~~~~~v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~  268 (340)
T 2hjs_A          214 IERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLD  268 (340)
T ss_dssp             HHHHHHHHHHHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEeEEcCcCceEEEEEEEEECCCCCHHHHHHHHh
Confidence            6       45677877889999999999999999999999999999999999874

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=1.3e-42  Score=310.71  Aligned_cols=231  Identities=23%  Similarity=0.287  Sum_probs=183.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeec--ccCCcccccce-eeeCCceEEECCEEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYD--SVHGQWKHHEL-KVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~l~~~g~~~~~~   79 (265)
                      |+||||+|+|++|++++|+|.+||++++++|++..  ....++++.++  ++|+.|. +.+ ...+. .+.+++      
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~--~~~~~~~~~~~g~~~~~~~~-~~v~~~~~~-~l~v~~------   70 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTR--PDFEARMALKKGYDLYVAIP-ERVKLFEKA-GIEVAG------   70 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESS--CSHHHHHHHHTTCCEEESSG-GGHHHHHHT-TCCCCE------
T ss_pred             CeEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCC--hhHHHHhcCCcchhhccccc-cceeeecCC-ceEEcC------
Confidence            48999999999999999999999999999999874  22233334333  5666665 221 00100 121111      


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CC--ceEEeeeccccccCCCCeEEcCCCch
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DA--PMFVVGVNEHEYKPELNIVSNASCTT  156 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~--~~~v~~vn~~~~~~~~~~Va~p~C~~  156 (265)
                         +++++ +  .++|+||+|||++.+.+.++.++++|++ ++.++... |.  |++|||+|++++++ +++|+||||++
T Consensus        71 ---~~~~~-~--~~vDvV~~atp~~~~~~~a~~~l~aG~~-VId~sp~~~d~~~~~~V~gvN~e~~~~-~~iIanp~C~t  142 (337)
T 1cf2_P           71 ---TVDDM-L--DEADIVIDCTPEGIGAKNLKMYKEKGIK-AIFQGGEKHEDIGLSFNSLSNYEESYG-KDYTRVVSCNT  142 (337)
T ss_dssp             ---EHHHH-H--HTCSEEEECCSTTHHHHHHHHHHHHTCC-EEECTTSCHHHHSCEECHHHHGGGGTT-CSEEEECCHHH
T ss_pred             ---CHHHH-h--cCCCEEEECCCchhhHHHHHHHHHcCCE-EEEecCCCCccCCCeEEeeeCHHHhcC-CCEEEcCCcHH
Confidence               12222 1  3699999999999999999999999975 55543323 33  89999999999985 79999999999


Q ss_pred             hhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeec----CCChhhHHHhhccCCCCceeE
Q 024565          157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPS----STGAAKAVGKVLPALNGKLTG  232 (265)
Q Consensus       157 ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~----~~~~~~~~~~~l~e~~~~v~~  232 (265)
                      |+++++|+||+++|||+++.++++|+.|+       +    +.+++..++|++|+    .++|.+|+.|++ +++  +++
T Consensus       143 t~l~~~l~pL~~~~gI~~~~vtt~~a~s~-------p----~~~~~~~~~NiiP~~i~~~~~~~~ei~kil-~l~--v~~  208 (337)
T 1cf2_P          143 TGLCRTLKPLHDSFGIKKVRAVIVRRGAD-------P----AQVSKGPINAIIPNPPKLPSHHGPDVKTVL-DIN--IDT  208 (337)
T ss_dssp             HHHHHHHHHHHHHHCEEEEEEEEEEESSC-------T----TCTTCCCSSCCEESSSSSSCTHHHHHHTTS-CCC--EEE
T ss_pred             HHHHHHHHHHHHhcCcceeEEEEEEEeec-------C----CccccchhcCEEeccCCCCCcchHHHHhhh-eeE--EEE
Confidence            99999999999999999999999998876       1    23456789999999    577889999999 774  999


Q ss_pred             EEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          233 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       233 ~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      +|+|||++|||+.++|++|+++++.||++++|+
T Consensus       209 t~~rVPv~~g~~~~~~v~l~~~~t~eei~~~~~  241 (337)
T 1cf2_P          209 MAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFE  241 (337)
T ss_dssp             EEEEESCCSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             EEEEcCccCeEEEEEEEEECCCCCHHHHHHHHH
Confidence            999999999999999999999999999999874

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=100.00  E-value=3.9e-41  Score=302.92  Aligned_cols=232  Identities=16%  Similarity=0.223  Sum_probs=184.4

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            3 KVKIGINGF-GRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      ++||||+|+ ||+|++++|+|.+|  |.+++..+.+.+..++                          .+.+.|+++.+ 
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~--------------------------~~~~~~~~~~~-   54 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGK--------------------------SLKFKDQDITI-   54 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTC--------------------------EEEETTEEEEE-
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCC--------------------------cceecCCCceE-
Confidence            689999999 99999999999998  8899999887643332                          23344444544 


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccCCCCeEEcCCCch
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKPELNIVSNASCTT  156 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~  156 (265)
                      .+.+++++    .++|+||+|+|++.++++++.++++|++.+.+|++   +++.|.++||+|++.++..+++|+||||++
T Consensus        55 ~~~~~~~~----~~~Dvvf~a~~~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpevN~~~i~~~~~iIanpgC~t  130 (366)
T 3pwk_A           55 EETTETAF----EGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPNCST  130 (366)
T ss_dssp             EECCTTTT----TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGTTCCSEEECCCHHH
T ss_pred             eeCCHHHh----cCCCEEEECCChHhHHHHHHHHHHCCCEEEEcCCccccCCCceEEEccCCHHHHcCCCCeEECCCcHH
Confidence            22344444    57999999999999999999999999965556777   345789999999999985478999999999


Q ss_pred             hhhHhHHHHHHHhcCceEEEEEEEeecccccccc-CC---------------CCCCcccCC-------ccCCCceeecCC
Q 024565          157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTV-DG---------------PSSKDWRGG-------RAASFNIIPSST  213 (265)
Q Consensus       157 ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~-d~---------------~~~~~~~~~-------~~~a~n~~p~~~  213 (265)
                      |+++++|+||+++++|+++.+++++++||+++.. +.               .......++       .+++||++|+..
T Consensus       131 t~~~l~l~pL~~~~~i~~i~v~t~~~vSGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~y~~~~~HrH~~ia~NviP~I~  210 (366)
T 3pwk_A          131 IQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALPQID  210 (366)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSSSCTTSSCCCCCTTCCBCCSS
T ss_pred             HHHHHHHHHHHHhCCCcEEEEEEEEeccccCcchhhHHHHHHHHHhcccccccccCcccCCcccccccchhhccccceec
Confidence            9999999999999999999999999999984422 10               000011233       679999999973


Q ss_pred             -----ChhhHHHh-------hccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          214 -----GAAKAVGK-------VLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       214 -----~~~~~~~~-------~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                           ++.+|+.|       +++....+++|+|++||++|||+.++|++++++++.+|++++|+
T Consensus       211 ~~~~~g~t~EE~k~~~E~~kil~~~~~~v~ftp~rVPv~rG~~~tv~v~l~~~~s~eei~~~l~  274 (366)
T 3pwk_A          211 VFTDNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIA  274 (366)
T ss_dssp             CBCTTSSBHHHHHHHHHHHHHTTCTTSEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHH
T ss_pred             ccccCCCcHHHHHHHHHHHHHhcCCCCCeEEEEEEechhccEEEEEEEEECCCCCHHHHHHHHH
Confidence                 66666654       44444457999999999999999999999999999999999873

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=100.00  E-value=6.9e-41  Score=299.22  Aligned_cols=231  Identities=20%  Similarity=0.311  Sum_probs=183.0

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            4 VKIGINGF-GRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      +||||+|+ ||+|++++|+|.+|  |.+++..+.+.+..++                          .+.+.|+++.+ +
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~--------------------------~~~~~~~~~~~-~   54 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGR--------------------------KLAFRGQEIEV-E   54 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSC--------------------------EEEETTEEEEE-E
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCC--------------------------ceeecCCceEE-E
Confidence            79999999 99999999999998  8899999887643332                          33344555544 2


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeecc-ccccCC-CCeEEcCCCc
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNE-HEYKPE-LNIVSNASCT  155 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~-~~~~~~-~~~Va~p~C~  155 (265)
                      +.+++.+    .++|+||+|+|++.++++++.++++|++.+.+|++   +++.|.++||+|+ +.++.. .++|+||||+
T Consensus        55 ~~~~~~~----~~~Dvvf~a~~~~~s~~~a~~~~~~G~~vID~Sa~~R~~~~~p~~vpevN~~~~i~~~~~~iIanpgC~  130 (344)
T 3tz6_A           55 DAETADP----SGLDIALFSAGSAMSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRRPKGIIANPNCT  130 (344)
T ss_dssp             ETTTSCC----TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTSHHHHTTCCTTSEEECCCHH
T ss_pred             eCCHHHh----ccCCEEEECCChHHHHHHHHHHHhCCCEEEECCCccccCCCccEEEccCCCHHHhhhcCCCEEECCCcH
Confidence            2344443    57999999999999999999999999965555776   3567999999999 999752 4899999999


Q ss_pred             hhhhHhHHHHHHHhcCceEEEEEEEeecccccccc--------------------CCCCC---CcccCCccCCCceeecC
Q 024565          156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTV--------------------DGPSS---KDWRGGRAASFNIIPSS  212 (265)
Q Consensus       156 ~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~--------------------d~~~~---~~~~~~~~~a~n~~p~~  212 (265)
                      +|+++++|+||+++++|+++.++++|++||+++..                    ++...   ..+.+++.++||++|+.
T Consensus       131 tt~~~l~l~pL~~~~~i~~i~v~t~~~~SGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aynv~p~i  210 (344)
T 3tz6_A          131 TMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAVIGGAEQLVYDGGALEFPPPNTYVAPIAFNVVPLA  210 (344)
T ss_dssp             HHHHHHHHHHHHHHHCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHGGGGGGGGTCTTSSCCCCCSSSSSCCTTCCBCCC
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEeccCCCccChhhhHHHHHHHHhhhccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999984421                    11100   12356778999999984


Q ss_pred             -------CChhhHHHh-------hccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          213 -------TGAAKAVGK-------VLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       213 -------~~~~~~~~~-------~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                             |.|.+|+.+       ++..-..+++|+|+|||++|||+.++|++|+++++.+|++++|+
T Consensus       211 ~~~~~~ghrHt~EE~k~~~e~~kilg~~~~~v~ft~vrvPv~rGh~~tv~v~l~~~~s~eei~~~l~  277 (344)
T 3tz6_A          211 GSLVDDGSGETDEDQKLRFESRKILGIPDLLVSGTCVRVPVFTGHSLSINAEFAQPLSPERARELLD  277 (344)
T ss_dssp             SCBCSSSSCCBHHHHHHHHHHHHHHTCTTCEEEEECCBCSCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             cccccCCCcCCHHHHHHHHHHHHhcCCCCCceEEEEEEeceeceEEEEEEEEECCCCCHHHHHHHHh
Confidence                   345776443       33222246999999999999999999999999999999999873

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=100.00  E-value=3e-41  Score=303.77  Aligned_cols=236  Identities=17%  Similarity=0.219  Sum_probs=184.6

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      ++||||+|+ ||+|++++|+|.+||++|++.+.+++..++.+.....+ ..++.++ ..     .       +++.+ .+
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~-~~~~~~~-~~-----~-------~~~~v-~~   71 (359)
T 4dpk_A            7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRW-QTVGQVP-KE-----I-------ADMEI-KP   71 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCC-CSSSCCC-HH-----H-------HTCBC-EE
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhccc-ccccccc-cc-----c-------ccceE-Ee
Confidence            589999999 99999999999999999999998876555544311000 0011111 00     0       01112 11


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccC--C--------CCe
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKP--E--------LNI  148 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~--~--------~~~  148 (265)
                      .+++++    .++|+||+|+|++.++++++.++++|++.+++|++   +++.|..+||+|+++++.  .        +++
T Consensus        72 ~~~~~~----~~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~i  147 (359)
T 4dpk_A           72 TDPKLM----DDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFI  147 (359)
T ss_dssp             CCGGGC----TTCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEE
T ss_pred             CCHHHh----cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccE
Confidence            233333    57999999999999999999999999976667887   346788999999998742  1        369


Q ss_pred             EEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCC----hhhHHHhhcc
Q 024565          149 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTG----AAKAVGKVLP  224 (265)
Q Consensus       149 Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~----~~~~~~~~l~  224 (265)
                      |+|||||+|+++++|+||+++|||+++.+++++++||+++..   .+     ...+++|++||..+    +.+|+.++++
T Consensus       148 IanPgC~tt~~~l~L~PL~~~~gi~~v~v~t~~g~SGaG~~~---~~-----~~~~~~N~ipy~~~~e~k~~~Ei~kil~  219 (359)
T 4dpk_A          148 VTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYPG---IP-----SLDVVDNILPLGDGYDAKTIKEIFRILS  219 (359)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHSCEEEEEEEEEECSGGGCSSC---SB-----GGGTTTCCEECCHHHHHHHHHHHHHHHH
T ss_pred             EECCCcHHHHHHHHHHHHHHhcCCcEEEEEEEeccccCCCcC---cc-----ChHHhCCeEeecCcHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999987651   11     14688999999853    3467888888


Q ss_pred             CCCC----------ceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          225 ALNG----------KLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       225 e~~~----------~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++.+          +++|+|+|||++|||+.++|++++++++.||++++|+
T Consensus       220 ~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~  270 (359)
T 4dpk_A          220 EVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLE  270 (359)
T ss_dssp             TSCCSCCCSCGGGCEEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             hcccccccccccCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHH
Confidence            7754          6999999999999999999999999999999999873

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=100.00  E-value=3e-41  Score=303.77  Aligned_cols=236  Identities=17%  Similarity=0.219  Sum_probs=184.5

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      ++||||+|+ ||+|++++|+|.+||++|++.+.+++..++.+.....+ ..++.++ ..     .       +++.+ .+
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~-~~~~~~~-~~-----~-------~~~~v-~~   71 (359)
T 4dpl_A            7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRW-QTVGQVP-KE-----I-------ADMEI-KP   71 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCC-CSSSCCC-HH-----H-------HTCBC-EE
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhccc-ccccccc-cc-----c-------ccceE-Ee
Confidence            589999999 99999999999999999999998876555544311000 0011111 00     0       01112 11


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccC--C--------CCe
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKP--E--------LNI  148 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~--~--------~~~  148 (265)
                      .+++++    .++|+||+|+|++.++++++.++++|++.+++|++   +++.|..+||+|+++++.  .        +++
T Consensus        72 ~~~~~~----~~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~i  147 (359)
T 4dpl_A           72 TDPKLM----DDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFI  147 (359)
T ss_dssp             CCGGGC----TTCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEE
T ss_pred             CCHHHh----cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccE
Confidence            233333    57999999999999999999999999976667887   346788999999998742  1        369


Q ss_pred             EEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCC----hhhHHHhhcc
Q 024565          149 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTG----AAKAVGKVLP  224 (265)
Q Consensus       149 Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~----~~~~~~~~l~  224 (265)
                      |+|||||+|+++++|+||+++|||+++.+++++++||+++..   .+     ...+++|++||..+    +.+|+.++++
T Consensus       148 IanPgC~tt~~~l~L~PL~~~~gi~~v~v~t~~g~SGaG~~~---~~-----~~~~~~N~ipy~~~~e~k~~~Ei~kil~  219 (359)
T 4dpl_A          148 VTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYPG---IP-----SLDVVDNILPLGDGYDAKTIKEIFRILS  219 (359)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHSCEEEEEEEEEBCGGGGCSSC---SB-----HHHHTTCCEECCHHHHHHHHHHHHHHHT
T ss_pred             EECCCcHHHHHHHHHHHHHHhcCCcEEEEEEEeccccCCCcC---cc-----ChHHhCCeEeecCcHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999987651   11     13578999999853    3467888888


Q ss_pred             CCCC----------ceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          225 ALNG----------KLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       225 e~~~----------~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++.+          +++|+|+|||++|||+.++|++++++++.||++++|+
T Consensus       220 ~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~  270 (359)
T 4dpl_A          220 EVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLE  270 (359)
T ss_dssp             TSCCSSCCSCGGGCEEEEECEECSCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             hcccccccccccCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHH
Confidence            7754          6999999999999999999999999999999999873

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=100.00  E-value=2.1e-41  Score=306.17  Aligned_cols=240  Identities=22%  Similarity=0.279  Sum_probs=178.7

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe-ccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVN-DPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+|+||||+|+ ||+|++++|+|.+||++|+..+. +.+..++.+.      +.++.+. ..       .++.+.+++.+
T Consensus        17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~------~~~~~~~-~~-------~~p~~~~~~~v   82 (381)
T 3hsk_A           17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYK------DAASWKQ-TE-------TLPETEQDIVV   82 (381)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHH------HHCCCCC-SS-------CCCHHHHTCBC
T ss_pred             CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHH------Hhccccc-cc-------ccccccccceE
Confidence            77899999999 99999999999999999999986 4443454432      2222211 00       00000011112


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeecccccc------------
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYK------------  143 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~------------  143 (265)
                       ++.++++ +|  .++|+||+|+|++.++++++.++++|++.+.+|++   +++.|++++++|.+.+.            
T Consensus        83 -~~~~~~~-~~--~~~Dvvf~alp~~~s~~~~~~~~~~G~~VIDlSa~fR~~~~vplvv~~vn~~~~~l~E~~r~~~~~~  158 (381)
T 3hsk_A           83 -QECKPEG-NF--LECDVVFSGLDADVAGDIEKSFVEAGLAVVSNAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVSK  158 (381)
T ss_dssp             -EESSSCT-TG--GGCSEEEECCCHHHHHHHHHHHHHTTCEEEECCSTTTTCTTSCEECTTTCGGGGHHHHHHHHHHHHT
T ss_pred             -EeCchhh-hc--ccCCEEEECCChhHHHHHHHHHHhCCCEEEEcCCcccCCCCCcEEecccCHHHcCCHhhhhhhhccc
Confidence             2223331 23  57999999999999999999999999976666777   34678999999877653            


Q ss_pred             ---CCCCeEEcCCCchhhhHhHHHHHHHhcC-ceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCC----h
Q 024565          144 ---PELNIVSNASCTTNCLAPLAKVIHDKFG-IVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTG----A  215 (265)
Q Consensus       144 ---~~~~~Va~p~C~~ta~~~~L~pL~~~~~-i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~----~  215 (265)
                         +++++|+|||||+|+++++|+||+++|| |+++.+++++++||+++....    .   ...+++|++||..+    +
T Consensus       159 ~~i~~~~iIaNPgC~tt~~~laL~PL~~~~glI~~v~v~t~~gvSGAG~~~~~----~---~~~~~~N~~Py~~~~e~k~  231 (381)
T 3hsk_A          159 GGKKPGFIICISNCSTAGLVAPLKPLVEKFGPIDALTTTTLQAISGAGFSPGV----S---GMDILDNIVPYISGEEDKL  231 (381)
T ss_dssp             TCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEEEEEBCCCC------C----C---HHHHTTCCBCCCTTHHHHH
T ss_pred             ccccCCcEEECCCcHHHHHHHHHHHHHHhcCCceEEEEEEeeccCCCCccCCc----c---hhhhhcChhhcccchHHHH
Confidence               2467999999999999999999999878 899999999999998752111    1   13688999999965    3


Q ss_pred             hhHHHhhccCCCC-------------ceeEEEEEeeeCceEEEEEEEEecC--CCCHHHHHHHhC
Q 024565          216 AKAVGKVLPALNG-------------KLTGMAFRVPTVDVSVVDLTVRLEK--DASYDEIKAAIK  265 (265)
Q Consensus       216 ~~~~~~~l~e~~~-------------~v~~~~~~vP~~~G~~~~~~v~~~~--~~~~e~v~~~~~  265 (265)
                      .+|+.|+++.+.+             +++|+|+|||++|||+.++|++|++  +++.||++++|+
T Consensus       232 ~~Ei~kiL~~l~~~~~~~~~~~~~~~~v~ft~~rVPv~rG~~~tv~v~l~~~~~~t~eei~~~l~  296 (381)
T 3hsk_A          232 EWETKKILGGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECISLRFANRPAPSVEDVKQCLR  296 (381)
T ss_dssp             HHHHHHHTCEECTTSSSEECCCTTTCEEEEECCBCSCSSCCEEEEEEEESSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHhhhcccccccccccccCCCceEEEEEEeceeccEEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            4677888876543             7899999999999999999999999  899999999873

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=100.00  E-value=6.5e-41  Score=301.56  Aligned_cols=237  Identities=20%  Similarity=0.225  Sum_probs=183.6

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe-ccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVN-DPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      +|+||||+|+ |++|++++|+|.+||++|+++++ +++..+..      +++.|+.+.+..        +..++..+.+ 
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~------~~~~~~~~~~~~--------~~~~~~~~~~-   67 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKK------YKDAVKWIEQGD--------IPEEVQDLPI-   67 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSB------HHHHCCCCSSSS--------CCHHHHTCBE-
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCC------HHHhcCcccccc--------cccCCceeEE-
Confidence            4799999997 99999999999999999999998 33323322      345565541000        1111112223 


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccC----------CC
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKP----------EL  146 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~----------~~  146 (265)
                      .+.++++  |  .++|+||+|+|++.+.+.++.++++|++.+..|++   .++.|.++|++|++.+..          ++
T Consensus        68 ~~~d~~~--~--~~vDvVf~atp~~~s~~~a~~~~~aG~~VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~  143 (350)
T 2ep5_A           68 VSTNYED--H--KDVDVVLSALPNELAESIELELVKNGKIVVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKG  143 (350)
T ss_dssp             ECSSGGG--G--TTCSEEEECCCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGGGHHHHHHHHTCSS
T ss_pred             eeCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCCEEEECCccccCCCCCCeeCCccCHHHhcChHhhhhhcccCc
Confidence            2223333  4  47999999999999999999999999853334655   245788999999876551          35


Q ss_pred             CeEEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCC----hhhHHHhh
Q 024565          147 NIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTG----AAKAVGKV  222 (265)
Q Consensus       147 ~~Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~----~~~~~~~~  222 (265)
                      ++|+|||||+|+++++|+||+++++++++.+++++++||+++..  . +     .+.+++|++||..+    |.+|+.++
T Consensus       144 ~iIanpgC~tt~~~l~l~pL~~~~gi~~i~v~t~~~~SGaG~~~--~-~-----~~~~~~ni~py~~~~e~k~~~E~~~~  215 (350)
T 2ep5_A          144 ILVKNPNCTAAIMSMPIKPLIEIATKSKIIITTLQAVSGAGYNG--I-S-----FMAIEGNIIPYIKGEEDKIAKELTKL  215 (350)
T ss_dssp             EEEECCCHHHHHHHHHHGGGHHHHHTSEEEEEEEECGGGGCSSS--S-B-----HHHHTTCCBCCCTTHHHHHHHHHHHH
T ss_pred             eEEEcCchHHHHHHHHHHHHHHhcCCcEEEEEEEEecCcCCCCC--C-C-----ChHHhCCEEeccCCcchHHHHHHHHH
Confidence            79999999999999999999998999999999999999987652  1 1     24578899999966    45677888


Q ss_pred             ccCCCC--------ceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          223 LPALNG--------KLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       223 l~e~~~--------~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++++.+        +++|+|+|||++|||+.++|++++++++.||++++|+
T Consensus       216 l~~~~g~~~~~~~~~v~~t~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~  266 (350)
T 2ep5_A          216 NGKLENNQIIPANLDSTVTSIRVPTRVGHMGVINIVTNERINIEEIKKTLK  266 (350)
T ss_dssp             TCEECSSSEECCCCEEEEEEEECSCSSCEEEEEEEECCSCCCHHHHHHHHH
T ss_pred             HhhccccccccccccEEEEeEEecccceEEEEEEEEECCCCCHHHHHHHHH
Confidence            888755        6999999999999999999999999999999999874

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=100.00  E-value=9.5e-41  Score=301.26  Aligned_cols=233  Identities=16%  Similarity=0.203  Sum_probs=177.7

Q ss_pred             ccEEEEEcc-ChhHHHHHH-HHHcCC--CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF-GRIGRLVAR-VILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~-~L~~~p--~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      ++||||+|+ ||+|++++| +|.+||  .+++..+.++ ..+..+.          .|.               |..+.+
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~----------~~~---------------~~~~~v   57 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAP----------SFA---------------KNETTL   57 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCC----------TTC---------------CSCCBC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHH----------HcC---------------CCceEE
Confidence            589999999 999999999 999998  6888888775 3443211          111               111112


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE--cCC---CCCCceEEeeeccccccCC--C--CeE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP---SKDAPMFVVGVNEHEYKPE--L--NIV  149 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi--s~~---~~~~~~~v~~vn~~~~~~~--~--~~V  149 (265)
                      ....+++++    .++|+||+|+|++.++++++.++++|+|.+||  |++   +++.|.++||+|+++++..  .  ++|
T Consensus        58 ~~~~~~~~~----~~vDvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~~i~~I  133 (377)
T 3uw3_A           58 KDATSIDDL----KKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVIKDALVNGTKNF  133 (377)
T ss_dssp             EETTCHHHH----HTCSEEEECSCHHHHHHHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEE
T ss_pred             EeCCChhHh----cCCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHHhhhhhcCCcEE
Confidence            111122222    57999999999999999999999999865666  544   2456889999999988641  2  459


Q ss_pred             EcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccC-------------------CC-----------------
Q 024565          150 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVD-------------------GP-----------------  193 (265)
Q Consensus       150 a~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d-------------------~~-----------------  193 (265)
                      +|||||+|+++++|+||+++++|+++.++++|++||+++...                   .+                 
T Consensus       134 anp~C~tt~~~l~L~pL~~~~~I~~i~v~t~~avSGAG~~~~~el~~q~~~l~~~~~~~~~~p~~~ild~~~~~~~~~~~  213 (377)
T 3uw3_A          134 IGGNCTVSLMLMALGGLFRENLVDWMTAMTYQAASGAGAQNMRELLAQMGTLNGAVAAQLADPASAILDIDRRVLAAMNG  213 (377)
T ss_dssp             EECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHTTHHHHTCTTSCHHHHHHHHHHHHHS
T ss_pred             EcCCHHHHHHHHHHHHHHHhCCCCEEEEeeeecccccchhhHHHHHHHHHHhhccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999844210                   01                 


Q ss_pred             -CCCcccCCccCCCceeecC-----CChhhH-------HHhhccCC------CCceeEEEEEeeeCceEEEEEEEEecCC
Q 024565          194 -SSKDWRGGRAASFNIIPSS-----TGAAKA-------VGKVLPAL------NGKLTGMAFRVPTVDVSVVDLTVRLEKD  254 (265)
Q Consensus       194 -~~~~~~~~~~~a~n~~p~~-----~~~~~~-------~~~~l~e~------~~~v~~~~~~vP~~~G~~~~~~v~~~~~  254 (265)
                       +.....|++++++|++||.     |+|.+|       .++++...      ..+++|+|+|||++|||++++|++|+++
T Consensus       214 ~~~~~~~f~~~ia~N~~P~i~~~~~~g~t~EE~ki~~E~~kilg~~~~~~~~~i~Vs~t~vrVPv~rGh~~tv~v~~~~~  293 (377)
T 3uw3_A          214 DAMPTSQFGVPLAGSLIPWIDKDLGNGMSREEWKGGAETNKILGKPAMGEPGSVPVDGLCVRIGAMRCHSQALTIKLKKD  293 (377)
T ss_dssp             TTSCCTTTSSCCTBSCBSCCSCBCSSSCBHHHHHHHHHHHHHHTCCCTTSTTCCCEEEECCBCSBSSEEEEEEEEEESSC
T ss_pred             cccccccccccccCceEEeecccccCCCCHHHHHHHHHHHHHhcccccccCCCceEEEEeEEecccceEEEEEEEEeCCC
Confidence             1123467788999999997     455555       44555543      3469999999999999999999999999


Q ss_pred             CCHHHHHHHhC
Q 024565          255 ASYDEIKAAIK  265 (265)
Q Consensus       255 ~~~e~v~~~~~  265 (265)
                      ++.+|++++|+
T Consensus       294 ~~~eei~~~l~  304 (377)
T 3uw3_A          294 VPLDEINGILA  304 (377)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999999873

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=100.00  E-value=4.3e-40  Score=296.33  Aligned_cols=232  Identities=17%  Similarity=0.176  Sum_probs=176.5

Q ss_pred             cEEEEEcc-ChhHHHHHH-HHHcCC--CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            4 VKIGINGF-GRIGRLVAR-VILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~-~L~~~p--~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |||||+|+ ||+|++++| +|.+||  .+++..+++++ .++.+.          .|.               |..+.+.
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~----------~~~---------------~~~~~~~   54 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAP----------NFG---------------KDAGMLH   54 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCC----------CSS---------------SCCCBCE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHH----------HhC---------------CCceEEE
Confidence            58999999 999999999 999998  68888887764 443211          111               1111121


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE--cCC---CCCCceEEeeeccccccCC----CCeEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP---SKDAPMFVVGVNEHEYKPE----LNIVS  150 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi--s~~---~~~~~~~v~~vn~~~~~~~----~~~Va  150 (265)
                      ...+++++    .++|+||+|+|++.++++++.++++|+|.+||  |++   +++.|.++||+|+++++..    .++|+
T Consensus        55 ~~~~~~~~----~~~Dvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~~i~~Ia  130 (370)
T 3pzr_A           55 DAFDIESL----KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFV  130 (370)
T ss_dssp             ETTCHHHH----TTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred             ecCChhHh----ccCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCchhccCCCCcEEcccCCHHHHhhhhhcCCcEEE
Confidence            11122222    57999999999999999999999999865666  444   2456889999999988631    24699


Q ss_pred             cCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccC-------------------------------------CC
Q 024565          151 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVD-------------------------------------GP  193 (265)
Q Consensus       151 ~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d-------------------------------------~~  193 (265)
                      |||||+|+++++|+||+++++|+++.++++|++||+++...                                     +.
T Consensus       131 np~C~tt~~~l~L~pL~~~~~I~~i~v~t~~avSGAG~~~~~el~~q~~~~~~~~~~~l~~p~~~ild~~~~~~~~~~~~  210 (370)
T 3pzr_A          131 GGNCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANPASSILDIDKKVAETMRSG  210 (370)
T ss_dssp             ECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHST
T ss_pred             cCChHHHHHHHHHHHHHHhCCCcEEEEEeEEeccccChhhHHHHHHHHHHhhcccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999854210                                     00


Q ss_pred             CCCcccCCccCCCceeecC-----CChhhHH-------HhhccC--CCCceeEEEEEeeeCceEEEEEEEEecCCCCHHH
Q 024565          194 SSKDWRGGRAASFNIIPSS-----TGAAKAV-------GKVLPA--LNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDE  259 (265)
Q Consensus       194 ~~~~~~~~~~~a~n~~p~~-----~~~~~~~-------~~~l~e--~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~  259 (265)
                      ......+++++++|++||.     ||+.+|+       +++++.  -..+++|+|+|||++|||+.++|++|+++++.+|
T Consensus       211 ~~~~~~f~~~ia~N~~P~i~~~~~~g~t~EE~ki~~E~~kilg~~~~~i~V~~t~vrVPv~rGh~~tv~v~~~~~~~~~e  290 (370)
T 3pzr_A          211 SFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDE  290 (370)
T ss_dssp             TSCCTTTSSCCTTSEESCCSCBCTTSCBHHHHHHHHHHHHHTTCTTSCCCEECCCCEESCSSEEEEEEEEEESSCCCHHH
T ss_pred             ccccccccccccCceeeeccccccCCCCHHHHHHHHHHHHHhCccCCCceEEEEeEEecccceEEEEEEEEeCCCCCHHH
Confidence            1123467788999999997     3454443       445543  1346999999999999999999999999999999


Q ss_pred             HHHHhC
Q 024565          260 IKAAIK  265 (265)
Q Consensus       260 v~~~~~  265 (265)
                      ++++|+
T Consensus       291 i~~~l~  296 (370)
T 3pzr_A          291 IEEMIA  296 (370)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999873

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=100.00  E-value=5e-40  Score=293.11  Aligned_cols=226  Identities=14%  Similarity=0.138  Sum_probs=173.9

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccc---cChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPF---ITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+||+|+|+ |++|++++++|.+||+++++.+.+++   ..++.+      .+.|++|. +.             .++.+
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~------~~~~p~~~-~~-------------~~~~v   63 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLI------SDLHPQLK-GI-------------VELPL   63 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBH------HHHCGGGT-TT-------------CCCBE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCch------HHhCcccc-Cc-------------cceeE
Confidence            589999999 99999999999999999999998775   344432      24456554 10             01112


Q ss_pred             EecC-CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCC-C-C--Cc---------------eEEeee-
Q 024565           79 FGVR-NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-K-D--AP---------------MFVVGV-  137 (265)
Q Consensus        79 ~~~~-~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~-~-~--~~---------------~~v~~v-  137 (265)
                       .+. +++++   ..++|+||+|+|++.++++++.++++|++.+.+|++. - |  ++               .+|||+ 
T Consensus        64 -~~~~~~~~~---~~~~Dvvf~a~p~~~s~~~~~~~~~~g~~vIDlSa~fR~~d~~v~~~wy~~~~~~p~l~~~~vyglP  139 (337)
T 3dr3_A           64 -QPMSDISEF---SPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLA  139 (337)
T ss_dssp             -EEESSGGGT---CTTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHTSSCCSCHHHHHHCEECCT
T ss_pred             -eccCCHHHH---hcCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCccccCCcccchhhccccccChhhhcceEEEcc
Confidence             111 33333   1579999999999999999999999999766678872 1 2  21               356765 


Q ss_pred             --ccccccCCCCeEEcCCCchhhhHhHHHHHHH--hcCceEE-EEEEEeecccccccc-CCCCCCcccCCccCCCceeec
Q 024565          138 --NEHEYKPELNIVSNASCTTNCLAPLAKVIHD--KFGIVEG-LMTTVHSITATQKTV-DGPSSKDWRGGRAASFNIIPS  211 (265)
Q Consensus       138 --n~~~~~~~~~~Va~p~C~~ta~~~~L~pL~~--~~~i~~~-~v~~v~~~sg~~~~~-d~~~~~~~~~~~~~a~n~~p~  211 (265)
                        |+++++. +++|+|||||+|+++++|+||++  .++++++ .+++++++||+++.. +. .+.+     ++  |++||
T Consensus       140 Evn~~~i~~-~~iIanPgC~tt~~~l~L~PL~~~g~~~~~~i~~v~t~~g~SGaG~~~~~~-~~~~-----~~--n~~py  210 (337)
T 3dr3_A          140 EWCGNKLKE-ANLIAVPGCYPTAAQLALKPLIDADLLDLNQWPVINATSGVSGAGRKAAIS-NSFC-----EV--SLQPY  210 (337)
T ss_dssp             TTCCHHHHT-CSEEECCCHHHHHHHHHHHHHHHTTCBCTTSCCEEEEEECGGGGCSCCCST-TSGG-----GC--SEEEC
T ss_pred             ccCHHHhCC-CCEEecCChHHHHHHHHHHHHHHcCccCCCceEEEEEeeccccCCcccccc-cccc-----cc--ceEcc
Confidence              9999985 89999999999999999999999  4777788 899999999986433 32 2222     22  88998


Q ss_pred             CCChhhHHHhhccCCCC----ceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          212 STGAAKAVGKVLPALNG----KLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       212 ~~~~~~~~~~~l~e~~~----~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ..+.    |+|+||+.+    +++|+|+|||++|||+.++|++++++++.||++++|+
T Consensus       211 ~~~~----h~h~Pei~~~l~~~v~ft~~rvPv~rG~~~ti~~~l~~~~t~eev~~~l~  264 (337)
T 3dr3_A          211 GVFT----HRHQPEIATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQALQ  264 (337)
T ss_dssp             STTT----CTHHHHHHHHHTSCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHH
T ss_pred             Cccc----ceechhHHhhhcCCEEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHH
Confidence            8542    455555543    7999999999999999999999999999999998873

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=100.00  E-value=1.4e-39  Score=293.80  Aligned_cols=233  Identities=15%  Similarity=0.163  Sum_probs=177.1

Q ss_pred             ccEEEEEcc-ChhHHHHHH-HHHcCC--CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF-GRIGRLVAR-VILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~-~L~~~p--~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+||||+|+ |++|++++| +|.+|+  .+++..+.+++ .+..+          +.+               +|+.+.+
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s-~G~~v----------~~~---------------~g~~i~~   54 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ-LGQAA----------PSF---------------GGTTGTL   54 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBC----------CGG---------------GTCCCBC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC-CCCCc----------ccc---------------CCCceEE
Confidence            379999998 999999999 777774  46776665542 22210          011               1122333


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE--cCC---CCCCceEEeeeccccccCC---C-CeE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP---SKDAPMFVVGVNEHEYKPE---L-NIV  149 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi--s~~---~~~~~~~v~~vn~~~~~~~---~-~~V  149 (265)
                      ....++++  |  .++|+||+|+|++.++++++.++++|+|.+||  |++   +++.|.++|++|+++++..   . ++|
T Consensus        55 ~~~~~~~~--~--~~~DvVf~a~g~~~s~~~a~~~~~~G~k~vVID~ss~~R~~~~~~~~vpevN~~~i~~~~~~g~~~I  130 (367)
T 1t4b_A           55 QDAFDLEA--L--KALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTF  130 (367)
T ss_dssp             EETTCHHH--H--HTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEE
T ss_pred             EecCChHH--h--cCCCEEEECCCchhHHHHHHHHHHCCCCEEEEcCChhhccCCCCcEEeCCcCHHHHhhhhhcCCCEE
Confidence            22122332  5  47999999999999999999999999976777  333   2357889999999998741   1 699


Q ss_pred             EcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccc-------------------cCCCC----------------
Q 024565          150 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-------------------VDGPS----------------  194 (265)
Q Consensus       150 a~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~-------------------~d~~~----------------  194 (265)
                      +||||++|+++++|+||+++++|+++.++++|++||+++.                   +|.+.                
T Consensus       131 anp~Cttt~~~~al~pL~~~~~I~~~~vtt~~a~SGaG~~~~~el~~~~~~l~~~~~~~~~~~~~~ild~~r~~~~~~~~  210 (367)
T 1t4b_A          131 VGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRS  210 (367)
T ss_dssp             EECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHTHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHHHcCCCcEEEEEEEeccccccccchHHHHHHHhhhhccccccccccccchhhhhhcccccccc
Confidence            9999999999999999999999999999999999998432                   12221                


Q ss_pred             --CCcccCCccCCCceeecCCC-----hh-------hHHHhhccC-CCCceeEEEEEeeeCceEEEEEEEEecCCCCHHH
Q 024565          195 --SKDWRGGRAASFNIIPSSTG-----AA-------KAVGKVLPA-LNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDE  259 (265)
Q Consensus       195 --~~~~~~~~~~a~n~~p~~~~-----~~-------~~~~~~l~e-~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~  259 (265)
                        .....|++.+++|++||..+     |.       +|+.+++++ ...+++++|+|||++|||+.++|++++++++.||
T Consensus       211 ~~~~~~~f~~~~a~NiiP~~~~~~~~~~t~EE~k~~~e~~kil~~~~~~~v~~t~vrVPv~~g~~~~v~v~l~~~~t~ee  290 (367)
T 1t4b_A          211 GELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPT  290 (367)
T ss_dssp             TCSCCTTTSSCCTTCEESCCSCBCTTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCHHH
T ss_pred             ccCcccccchhhhCceEEEecCccccCccHHHHHHHHHHHHHhCcCCCceEEEEEEEcCccceEEEEEEEEECCCCCHHH
Confidence              12345678899999999964     33       445667754 4457999999999999999999999999999999


Q ss_pred             HHHHhC
Q 024565          260 IKAAIK  265 (265)
Q Consensus       260 v~~~~~  265 (265)
                      ++++|+
T Consensus       291 i~~~l~  296 (367)
T 1t4b_A          291 VEELLA  296 (367)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=100.00  E-value=6.3e-39  Score=287.88  Aligned_cols=229  Identities=16%  Similarity=0.071  Sum_probs=178.0

Q ss_pred             CC-ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MG-KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~-~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+ |+||||+|+ |++|++++|+|.+||++|++++++......      ++++.|+.|. +.             ..+.+
T Consensus         1 M~~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~------~~~~~~~~~~-g~-------------~~~~~   60 (345)
T 2ozp_A            1 MTGKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGE------PVHFVHPNLR-GR-------------TNLKF   60 (345)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTS------BGGGTCGGGT-TT-------------CCCBC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCc------hhHHhCchhc-Cc-------------ccccc
Confidence            54 689999997 999999999999999999999998643332      2467777775 10             01112


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC-CCCC-----------------ceEEeee---
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-SKDA-----------------PMFVVGV---  137 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~-~~~~-----------------~~~v~~v---  137 (265)
                         .+.+  +|  .++|+||+|+|++.+.+.++.++++|++.+.+|++ +-+.                 +.++|++   
T Consensus        61 ---~~~~--~~--~~vDvV~~a~g~~~s~~~a~~~~~aG~~VId~Sa~~r~~~~~~y~~~y~~h~~~e~l~~~vygvpE~  133 (345)
T 2ozp_A           61 ---VPPE--KL--EPADILVLALPHGVFAREFDRYSALAPVLVDLSADFRLKDPELYRRYYGEHPRPDLLGRFVYAVPEL  133 (345)
T ss_dssp             ---BCGG--GC--CCCSEEEECCCTTHHHHTHHHHHTTCSEEEECSSTTSCSCHHHHHHHHCCCSSGGGTTSSEECCHHH
T ss_pred             ---cchh--Hh--cCCCEEEEcCCcHHHHHHHHHHHHCCCEEEEcCccccCCChHHHHhhhccccchhhhccCcEecccc
Confidence               1222  35  57999999999999999999999999864445775 2111                 3567665   


Q ss_pred             ccccccCCCCeEEcCCCchhhhHhHHHHHHHhcCce--EEEEEEEeeccccccc-cCCCCCCcccCCccCCCceeecCCC
Q 024565          138 NEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKT-VDGPSSKDWRGGRAASFNIIPSSTG  214 (265)
Q Consensus       138 n~~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~--~~~v~~v~~~sg~~~~-~d~~~~~~~~~~~~~a~n~~p~~~~  214 (265)
                      |+++++. +++|+|||||+|+++++|+||+++++|+  ++.+++++++||+++. .+.. +.+     ....|++||..+
T Consensus       134 n~~~i~~-~~iIanp~C~tt~~~~~l~pL~~~~~i~~~~i~v~t~~~~SGaG~~~~~~~-~~~-----~~~~n~~py~~~  206 (345)
T 2ozp_A          134 YREALKG-ADWIAGAGCNATATLLGLYPLLKAGVLKPTPIFVTLLISTSAGGAEASPAS-HHP-----ERAGSIRVYKPT  206 (345)
T ss_dssp             HHHHHHT-CSEEECCCHHHHHHHHHHHHHHHTTCBCSSCEEEEEEECSGGGCSSCCGGG-CHH-----HHTTCCEEEECS
T ss_pred             CHHHhhc-CCEEeCCCcHHHHHHHHHHHHHHhcCCCCCeEEEEEEEEccccCccccccc-cch-----hhccccccCCCC
Confidence            9999995 8999999999999999999999999999  9999999999998754 3321 112     356788888744


Q ss_pred             ---hhhHHHhhccCCCC-ceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          215 ---AAKAVGKVLPALNG-KLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       215 ---~~~~~~~~l~e~~~-~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                         |.+|+.+.+.  .+ +++|+|+|||++|||+.++|++++++++.|||+++|+
T Consensus       207 ~h~~~pei~~~l~--~~~~v~~~~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~  259 (345)
T 2ozp_A          207 GHRHTAEVVENLP--GRPEVHLTAIATDRVRGILMTAQCFVQDGWSERDVWQAYR  259 (345)
T ss_dssp             CCTHHHHHHHTSS--SCCCEEEEEEECSCSSCEEEEEEEEBCTTCCHHHHHHHHH
T ss_pred             CccChHhHHHHhC--CCCCeEEEEEEeccccEEEEEEEEEeCCCCCHHHHHHHHH
Confidence               4556555554  14 7999999999999999999999999999999999873

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=100.00  E-value=1.2e-39  Score=294.01  Aligned_cols=232  Identities=11%  Similarity=0.118  Sum_probs=178.4

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+++||||+|+ |++|++++|+|.+||++|++++++.....      .++++.|+.|. +.+  ..         ++.+ 
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g------~~~~~~~~~~~-~~v--~~---------dl~~-   74 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG------QSMESVFPHLR-AQK--LP---------TLVS-   74 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT------SCHHHHCGGGT-TSC--CC---------CCBC-
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC------CCHHHhCchhc-Ccc--cc---------ccee-
Confidence            45689999997 99999999999999999999999864333      23467787775 210  00         1111 


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCC-CCC------------------ceEEeee---
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDA------------------PMFVVGV---  137 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~-~~~------------------~~~v~~v---  137 (265)
                        .+ ++ .|  .++|+||+|+|++.+.+.++.+ ++|++.+.+|++. -+.                  +.++||+   
T Consensus        75 --~~-~~-~~--~~vDvVf~atp~~~s~~~a~~~-~aG~~VId~sa~~R~~~~~~y~~~y~~~~~~~~~l~~~vygvpE~  147 (359)
T 1xyg_A           75 --VK-DA-DF--STVDAVFCCLPHGTTQEIIKEL-PTALKIVDLSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEI  147 (359)
T ss_dssp             --GG-GC-CG--GGCSEEEECCCTTTHHHHHHTS-CTTCEEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHH
T ss_pred             --cc-hh-Hh--cCCCEEEEcCCchhHHHHHHHH-hCCCEEEECCccccCCchhhhhhhhcCCcCChhhcCCceEECCcc
Confidence              12 33 36  4799999999999999999999 9999544457762 121                  3577776   


Q ss_pred             ccccccCCCCeEEcCCCchhhhHhHHHHHHHhcCce--EEEEEEEeeccccccc-cCCCCCCcccCCccCCCceeecC--
Q 024565          138 NEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKT-VDGPSSKDWRGGRAASFNIIPSS--  212 (265)
Q Consensus       138 n~~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~--~~~v~~v~~~sg~~~~-~d~~~~~~~~~~~~~a~n~~p~~--  212 (265)
                      |+++++. +++|+|||||+|+++++|+||+++++|+  ++.+++++++||+++. .+. ++.+     ....|++||.  
T Consensus       148 n~~~i~~-~~iIanpgC~tt~~~~~l~pL~~~~~i~~~~i~v~t~~~~SGaG~~~~~~-~~~~-----~~~~ni~py~~~  220 (359)
T 1xyg_A          148 LREDIKK-ARLVANPGCYPTTIQLPLVPLLKANLIKHENIIIDAKSGVSGAGRGAKEA-NLYS-----EIAEGISSYGVT  220 (359)
T ss_dssp             HHHHHHT-CSEEECCCHHHHHHHHHHHHHHHTTCBCSSSCEEEEEEEGGGGCSCCCGG-GBHH-----HHTTCCEECSCS
T ss_pred             CHHHhcc-CCEEECCCcHHHHHHHHHHHHHHcCCCCCCeEEEEEEEEccccCcccchh-hhhH-----HHhcCeeccccc
Confidence            9999995 8999999999999999999999999999  8899999999998764 332 1222     2456778877  


Q ss_pred             -CChhhHHHhhccCC---CCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          213 -TGAAKAVGKVLPAL---NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       213 -~~~~~~~~~~l~e~---~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                       |.|.+|+.+.+..+   ..+++|+|+|||++|||+.++|++++++++.|||+++|+
T Consensus       221 ~h~h~pEi~~~l~~~~~~~~~v~~t~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~  277 (359)
T 1xyg_A          221 RHRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLK  277 (359)
T ss_dssp             CCTHHHHHHHHHHHHHTSCCCCEEECEEESSSSCEEEEEEEEBCTTCCHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhcCCCCCEEEEEEEecccceEEEEEEEEeCCCCCHHHHHHHHH
Confidence             45666665444322   236999999999999999999999999999999999874

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=100.00  E-value=5.9e-39  Score=288.11  Aligned_cols=234  Identities=12%  Similarity=0.055  Sum_probs=178.5

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCC-----CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCE
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK   74 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p-----~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~   74 (265)
                      |+|+||+|+|+ |++|++++|+|.+||     ++|++.++++...++.      +++.|++|. +.    ..        
T Consensus         7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~------~~~~~~~l~-~~----~~--------   67 (352)
T 2nqt_A            7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGST------LGEHHPHLT-PL----AH--------   67 (352)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSB------GGGTCTTCG-GG----TT--------
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCc------hhhhccccc-cc----ce--------
Confidence            66789999998 999999999999999     9999999876533332      245677765 10    00        


Q ss_pred             EEEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCC-CCC----------------ceEEeee
Q 024565           75 PVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDA----------------PMFVVGV  137 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~-~~~----------------~~~v~~v  137 (265)
                       +.+.. .++++  |  .++|+||+|+|++.+.++++.+ ++|++.+++|++. -+.                +..+|++
T Consensus        68 -~~~~~-~~~~~--~--~~~DvVf~alg~~~s~~~~~~~-~~G~~vIDlSa~~R~~~~~~~~~~y~~~h~~~~vyglPEv  140 (352)
T 2nqt_A           68 -RVVEP-TEAAV--L--GGHDAVFLALPHGHSAVLAQQL-SPETLIIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPEL  140 (352)
T ss_dssp             -CBCEE-CCHHH--H--TTCSEEEECCTTSCCHHHHHHS-CTTSEEEECSSTTTCSCHHHHHHHHSSCCCCCCCBSCTTS
T ss_pred             -eeecc-CCHHH--h--cCCCEEEECCCCcchHHHHHHH-hCCCEEEEECCCccCCcchhhhhhccccCCCCeeEEeccc
Confidence             11111 22222  4  4799999999999999999999 9998655567772 121                4444556


Q ss_pred             --ccccccCCCCeEEcCCCchhhhHhHHHHHHHhcCce-EEEEEEEeeccccccc-cCCCCCCcccCCccCCCceeecCC
Q 024565          138 --NEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV-EGLMTTVHSITATQKT-VDGPSSKDWRGGRAASFNIIPSST  213 (265)
Q Consensus       138 --n~~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~-~~~v~~v~~~sg~~~~-~d~~~~~~~~~~~~~a~n~~p~~~  213 (265)
                        |+++++. +++|+|||||+|+++++|+||+++++|+ ++.+++++++||+++. .+. ++.++..++..+||+.|. |
T Consensus       141 ~~n~~~i~~-~~iIanPgC~tt~~~lal~PL~~~~~i~~~i~v~t~~g~SGaG~~~~~~-~~~~~~~~~~~ay~~~~~-h  217 (352)
T 2nqt_A          141 PGARDQLRG-TRRIAVPGCYPTAALLALFPALAADLIEPAVTVVAVSGTSGAGRAATTD-LLGAEVIGSARAYNIAGV-H  217 (352)
T ss_dssp             TTHHHHHTT-CSEEECCCHHHHHHHHHHHHHHHTTCSCSEEEEEEEECGGGGCSSCCGG-GSHHHHTTCCEECSTTTT-S
T ss_pred             ccCHHHHhc-CCEEEcCCHHHHHHHHHHHHHHHcCCCcceEEEEEEeccccCCcccccc-ccHHHHhhhcccccCCCc-c
Confidence              9999984 8999999999999999999999999998 8899999999998443 332 244566666778888762 3


Q ss_pred             ChhhHHHhhccCC---CCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          214 GAAKAVGKVLPAL---NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       214 ~~~~~~~~~l~e~---~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      .|.+|+.+.+..+   ..+++|+|+|||++|||+.++|++++++  .||++++|+
T Consensus       218 ~h~pEi~~e~~ki~~~~~~v~ft~~rvP~~rG~~~ti~~~l~~~--~~ei~~~~~  270 (352)
T 2nqt_A          218 RHTPEIAQGLRAVTDRDVSVSFTPVLIPASRGILATCTARTRSP--LSQLRAAYE  270 (352)
T ss_dssp             TTHHHHHHHHHTTCSSCCEEEEEEEECSCSSCEEEEEEEECCSC--HHHHHHHHH
T ss_pred             eecHHHHHHHHHHhCCCCCEEEEEEEEccccEEEEEEEEEECCC--HHHHHHHHH
Confidence            4677765544433   4579999999999999999999999887  899988873

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=2.6e-38  Score=285.20  Aligned_cols=239  Identities=21%  Similarity=0.266  Sum_probs=179.6

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec-cccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVND-PFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      ||+||||+|+ |++|++++|+|.+||+++++++++ +...++.      +++.|+.+....        +..++.++.+ 
T Consensus         7 M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~------~~~~~~~~~~~~--------~~~~~~~~~~-   71 (354)
T 1ys4_A            7 MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKK------YKDACYWFQDRD--------IPENIKDMVV-   71 (354)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSB------HHHHSCCCCSSC--------CCHHHHTCBC-
T ss_pred             ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEccccccccc------HHHhcccccccc--------cccCceeeEE-
Confidence            3589999997 999999999999999999999984 4323332      234455441000        0000111222 


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccC----------CC
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKP----------EL  146 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~----------~~  146 (265)
                      .+.++++  |...++|+||+|+|++.+.+.++.++++|++.+..|++   .++.|.++|++|++.+..          ++
T Consensus        72 ~~~~~~~--~~~~~~DvV~~atp~~~~~~~a~~~~~aG~~VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~  149 (354)
T 1ys4_A           72 IPTDPKH--EEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDG  149 (354)
T ss_dssp             EESCTTS--GGGTTCCEEEECCCHHHHHHHHHHHHHTTCEEEECCSTTTTCTTSCBCCHHHHGGGGGHHHHHHHHHCCSS
T ss_pred             EeCCHHH--HhcCCCCEEEECCCchHHHHHHHHHHHCCCEEEECCchhcCCCCCCccCcccCHHHhcChhhhhhhcccCC
Confidence            1134444  43237999999999999999999999999842223554   235788889999876651          24


Q ss_pred             CeEEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCC----hhhHHHhh
Q 024565          147 NIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTG----AAKAVGKV  222 (265)
Q Consensus       147 ~~Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~----~~~~~~~~  222 (265)
                      ++|+|||||+|+++++|+||++++||+++.+++++++||+++..  . +     .+..++|++||..+    |.+|+.++
T Consensus       150 ~iIanpgC~tt~~~l~l~pL~~~~gi~~~~v~t~~~~SGaG~~~--~-~-----~~~~~~ni~py~~~~~~k~~~Ei~~~  221 (354)
T 1ys4_A          150 AIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQAVSGAGYNG--V-P-----SMAILDNLIPFIKNEEEKMQTESLKL  221 (354)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHHHHCCSEEEEEEEBCSGGGCTTT--S-C-----HHHHTTCCBSCCTTHHHHHHHHHHHH
T ss_pred             eEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEEEEcCcCCccc--c-c-----chHHhCCEEeccCchhhHHHHHHHHH
Confidence            69999999999999999999998889999999999999987652  1 1     23578899999965    34667777


Q ss_pred             ccCCCC--------ceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          223 LPALNG--------KLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       223 l~e~~~--------~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++++.+        +++|+|+|||++|||+.++|++++++++.||++++|+
T Consensus       222 l~~~~g~~~~~~~~~v~~~~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~  272 (354)
T 1ys4_A          222 LGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMD  272 (354)
T ss_dssp             TSEEETTEEECCCCEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHH
T ss_pred             HhccccccccCCCceEEEEEEEecccceEEEEEEEEECCCCCHHHHHHHHH
Confidence            776533        6999999999999999999999999999999999874

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=4.7e-39  Score=287.46  Aligned_cols=227  Identities=12%  Similarity=0.117  Sum_probs=170.2

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||||+|+ ||+|++++|+|.+||++|+..+++.+..++.+      ++.|++|. .               ++.+ .+
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~------~~~~p~~~-~---------------~l~~-~~   69 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKL------EEIFPSTL-E---------------NSIL-SE   69 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBH------HHHCGGGC-C---------------CCBC-BC
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCCh------HHhChhhc-c---------------CceE-Ee
Confidence            699999999 99999999999999999999999876555432      45566663 1               1112 11


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC-CC---C-----------C------ceEEeeeccc
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-SK---D-----------A------PMFVVGVNEH  140 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~-~~---~-----------~------~~~v~~vn~~  140 (265)
                      .+++++ |  .++|+||+|+|++.++++++.+  +|++.+..|++ +-   +           .      +..+|++|++
T Consensus        70 ~~~~~~-~--~~~Dvvf~alp~~~s~~~~~~~--~g~~VIDlSsdfRl~~~~~y~~~y~~~h~~p~~~~~~yglPE~n~e  144 (351)
T 1vkn_A           70 FDPEKV-S--KNCDVLFTALPAGASYDLVREL--KGVKIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHRE  144 (351)
T ss_dssp             CCHHHH-H--HHCSEEEECCSTTHHHHHHTTC--CSCEEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHHH
T ss_pred             CCHHHh-h--cCCCEEEECCCcHHHHHHHHHh--CCCEEEECChhhhCCchhhhhhhcCCCCCchhhcCCceECCccCHH
Confidence            222232 2  5699999999999999999988  88854444776 21   1           1      3333456999


Q ss_pred             cccCCCCeEEcCCCchhhhHhHHHHHHHhcCce--EEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC---CCh
Q 024565          141 EYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TGA  215 (265)
Q Consensus       141 ~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~--~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~---~~~  215 (265)
                      +++. +++|+|||||+|+++++|+||+++++|+  ++.+++++++||+++.....++..     +...|+.||.   |.|
T Consensus       145 ~i~~-a~iIANPgC~~t~~~laL~PL~~~~~i~~~~iiv~t~sgvSGAG~~~~~~~~~~-----e~~~n~~~y~~~~h~h  218 (351)
T 1vkn_A          145 EIKN-AQVVGNPGCYPTSVILALAPALKHNLVDPETILVDAKSGVSGAGRKEKVDYLFS-----EVNESLRPYNVAKHRH  218 (351)
T ss_dssp             HHTT-CSEEECCCHHHHHHHHHHHHHHHTTCSCCSEEEEEEEEEGGGGCSCCSGGGBHH-----HHTTCCEECSCSCCTH
T ss_pred             Hhcc-CCEEeCCChHHHHHHHHHHHHHHcCCCCCCEEEEEEEeeccccCcccccccchh-----HHhcccccCCcccccc
Confidence            9995 7999999999999999999999999998  889999999999866432111112     2334555555   556


Q ss_pred             hhHHHhhccCC---CCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          216 AKAVGKVLPAL---NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       216 ~~~~~~~l~e~---~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      .+|+.+.+..+   ..+++|+|+|||++|||++++|++++  ++.+|++++|+
T Consensus       219 ~pEi~~el~~i~~~~~~v~ftp~rvPv~rG~~~tv~v~l~--~~~eei~~~l~  269 (351)
T 1vkn_A          219 VPEMEQELGKISGKKVNVVFTPHLVPMTRGILSTIYVKTD--KSLEEIHEAYL  269 (351)
T ss_dssp             HHHHHHHHHHHHTSCCEEEEEEEEESSSSCEEEEEEEECS--SCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCEEEEEEEeccccEEEEEEEEEEc--CCHHHHHHHHH
Confidence            77766554432   24699999999999999999999998  89999998873

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=2.7e-37  Score=276.69  Aligned_cols=222  Identities=18%  Similarity=0.267  Sum_probs=174.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |+||||+|+|++|++++|+|.+||++|+++|++..  ....++++.++               +         ++++...
T Consensus         1 ~ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~--~~~~~~~a~~~---------------g---------~~~~~~~   54 (340)
T 1b7g_O            1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTS--PNYEAFIAHRR---------------G---------IRIYVPQ   54 (340)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSS--CSHHHHHHHHT---------------T---------CCEECCG
T ss_pred             CeEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCC--hHHHHHHHHhc---------------C---------cceecCc
Confidence            48999999999999999999999999999999974  22222222111               0         0111101


Q ss_pred             CCCCCCcc-------------cccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC--CceEEeeeccccccCCCC
Q 024565           83 NPEEIPWA-------------ETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNEHEYKPELN  147 (265)
Q Consensus        83 ~~~~~~~~-------------~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~--~~~~v~~vn~~~~~~~~~  147 (265)
                      +++++ |.             ..++|+||+|||++.+.+.++.++++|++.+++|++..+  .+++++++|.++..+ .+
T Consensus        55 ~~~~~-~~~~~v~v~~~~e~l~~~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~sa~~~~~~~~~~v~~vN~~~~~~-~~  132 (340)
T 1b7g_O           55 QSIKK-FEESGIPVAGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVADISFSALCNYNEALG-KK  132 (340)
T ss_dssp             GGHHH-HHTTTCCCCCCHHHHHHHCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCGGGSSCEECHHHHHHHHTT-CS
T ss_pred             CHHHH-hcccccccccCHhHhhcCCCEEEECCCCchhHHHHHHHHHcCCeEEEeCCCCCCCCCCEEEcCcchHHHcC-CC
Confidence            12111 21             136899999999999999999999999976667877433  368999999766653 57


Q ss_pred             eEEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeec----CCChhhHHHhhc
Q 024565          148 IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPS----STGAAKAVGKVL  223 (265)
Q Consensus       148 ~Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~----~~~~~~~~~~~l  223 (265)
                      +|+||||++||++++|+||+++|||+++.+|++|+..      + + +.+   .+....|++|.    ..++.+++.+++
T Consensus       133 iIsnpsCtt~~l~~~lk~L~~~~gI~~~~~tt~~~~~------~-~-~~~---~~~~~~niip~~~~i~t~~a~ev~~vl  201 (340)
T 1b7g_O          133 YIRVVSCNTTALLRTICTVNKVSKVEKVRATIVRRAA------D-Q-KEV---KKGPINSLVPDPATVPSHHAKDVNSVI  201 (340)
T ss_dssp             EEEECCHHHHHHHHHHHHHHTTSCEEEEEEEEEEESS------C-T-TCC---SCCCSSCCEESSSSSSCTHHHHHHTTS
T ss_pred             CcccCCcHHHHHHHHHHHHHHhCCeEEEEEEEEeccC------C-c-ccc---hHHHHcCCCCCCcCCCCCchhHHHHhC
Confidence            9999999999999999999999999999999999753      2 2 112   34567788865    456889999999


Q ss_pred             cCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          224 PALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       224 ~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      |+++  ++++++|||+++||+.+++++|+++++.|||+++|+
T Consensus       202 p~l~--l~~~a~rVPv~~gh~~~l~v~l~~~~t~eei~~~l~  241 (340)
T 1b7g_O          202 RNLD--IATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLE  241 (340)
T ss_dssp             TTCE--EEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             CCCc--EEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHH
Confidence            9885  999999999999999999999999999999999874

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=1.5e-36  Score=271.59  Aligned_cols=230  Identities=25%  Similarity=0.302  Sum_probs=184.8

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeec--ccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYD--SVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      ||+||||+|+|++|++++|+|.+||++++++|++..  .+...++++++  ++|++|+ +.+....+       ..+.++
T Consensus         1 M~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~--~~~~~~~~~~~g~~~~~~~~-~~v~~~~~-------~~~~v~   70 (334)
T 2czc_A            1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTK--PDFEAYRAKELGIPVYAASE-EFIPRFEK-------EGFEVA   70 (334)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESS--CSHHHHHHHHTTCCEEESSG-GGHHHHHH-------HTCCCS
T ss_pred             CCcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCC--HHHHHHHHHhcCcccccccc-ccceeccC-------CceEEc
Confidence            168999999999999999999999999999999974  33444455444  5566665 22100000       001111


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-C-C-ceEEeeeccccccCCCCeEEcCCCch
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-A-PMFVVGVNEHEYKPELNIVSNASCTT  156 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~-~-~~~v~~vn~~~~~~~~~~Va~p~C~~  156 (265)
                        .+++++.   .++|+||+|||++.+.+.++.++++|+ +|+++++.. | . +++||++|.++++. .++|+||+|++
T Consensus        71 --~d~~~l~---~~vDvV~~aTp~~~h~~~a~~~l~aGk-~Vi~sap~~~d~~~~~~v~~vn~~~~~~-~~ii~~~~C~t  143 (334)
T 2czc_A           71 --GTLNDLL---EKVDIIVDATPGGIGAKNKPLYEKAGV-KAIFQGGEKADVAEVSFVAQANYEAALG-KNYVRVVSCNT  143 (334)
T ss_dssp             --CBHHHHH---TTCSEEEECCSTTHHHHHHHHHHHHTC-EEEECTTSCGGGSSEEECHHHHGGGGTT-CSEEEECCHHH
T ss_pred             --CcHHHhc---cCCCEEEECCCccccHHHHHHHHHcCC-ceEeecccccccccceEEeccCHHHHhh-CCcEEecCcHH
Confidence              2334442   379999999999999999999999995 577777743 4 3 58999999998984 78999999999


Q ss_pred             hhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeec---CCChhhHHHhhccCCCCceeEE
Q 024565          157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPS---STGAAKAVGKVLPALNGKLTGM  233 (265)
Q Consensus       157 ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~---~~~~~~~~~~~l~e~~~~v~~~  233 (265)
                      ++++|++++|++.  |+++.++++|++||.           |++++..++|++|+   .+++.+++.+++| +.  ++.+
T Consensus       144 ~~l~P~~~~l~~~--I~~g~i~ti~a~s~~-----------~~~~r~~~~niiP~i~~~~g~~~~i~~~l~-l~--l~~~  207 (334)
T 2czc_A          144 TGLVRTLSAIREY--ADYVYAVMIRRAADP-----------NDTKRGPINAIKPTVEVPSHHGPDVQTVIP-IN--IETM  207 (334)
T ss_dssp             HHHHHHHHHHGGG--EEEEEEEEEEESSCT-----------TCCSCCCSSCCEECCSSSCTHHHHHTTTSC-CC--EEEE
T ss_pred             HHHHHHHHHHHHH--hccccEEEEEEecCc-----------cccccChhhcEEeccCCCCchhhhhheEEE-EE--EEEE
Confidence            9999999999876  999999999999873           34567889999999   7789999999999 76  9999


Q ss_pred             EEEeeeCceEEEEEEEEecCCCCHHHHHHHh
Q 024565          234 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAI  264 (265)
Q Consensus       234 ~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~  264 (265)
                      ++|||+++||+.+++++++++++.||++++|
T Consensus       208 ~~rVPv~~~~~~~~~~~~~~~~~~e~i~~~~  238 (334)
T 2czc_A          208 AFVVPTTLMHVHSVMVELKKPLTKDDVIDIF  238 (334)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHH
T ss_pred             EEEcCCCceEEEEEEEEECCCCCHHHHHHHH
Confidence            9999999999999999999999999999986

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=99.23  E-value=4.3e-11  Score=105.54  Aligned_cols=209  Identities=17%  Similarity=0.147  Sum_probs=117.9

Q ss_pred             CCccEEEEEccChhHHHHHHHHHc-CCCeEEEEEeccccC--hhhhhhheeecccCCcccccceeeeCCceEEECCEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFIT--TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT   77 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~-~p~~el~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~   77 (265)
                      |+++||||+|+|++|+.+++.|.+ +|++++++++++..+  ...++..      +            |  .       .
T Consensus         2 ~~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~------~------------g--~-------~   54 (312)
T 1nvm_B            2 NQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQR------M------------G--V-------T   54 (312)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHH------T------------T--C-------C
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHH------c------------C--C-------C
Confidence            146999999999999999999977 899999999997522  2222100      0            1  0       0


Q ss_pred             EEecCCCCCCCccc---ccccEEEEecCCcccHHhHHHHHhC--CCCeEEE-cCCCCCCceEEeeeccccccC--CCCeE
Q 024565           78 VFGVRNPEEIPWAE---TGAEYVVESTGVFTDKDKAAAHLKG--GAKKVII-SAPSKDAPMFVVGVNEHEYKP--ELNIV  149 (265)
Q Consensus        78 ~~~~~~~~~~~~~~---~~~DvV~~at~~~~~~~~~~~~~~~--G~~~vvi-s~~~~~~~~~v~~vn~~~~~~--~~~~V  149 (265)
                      .+. .+.+++ ...   .++|+||+|||+..+.+++..++++  |+ ++++ +... -.|..++++|.+++..  ..+++
T Consensus        55 ~~~-~~~e~l-l~~~~~~~iDvV~~atp~~~h~~~a~~al~a~~Gk-~Vi~ekp~~-~g~~~~p~v~~~~~~~~~~~~lv  130 (312)
T 1nvm_B           55 TTY-AGVEGL-IKLPEFADIDFVFDATSASAHVQNEALLRQAKPGI-RLIDLTPAA-IGPYCVPVVNLEEHLGKLNVNMV  130 (312)
T ss_dssp             EES-SHHHHH-HHSGGGGGEEEEEECSCHHHHHHHHHHHHHHCTTC-EEEECSTTC-SSCBCCHHHHTTTTTTCSEEECC
T ss_pred             ccc-CCHHHH-HhccCCCCCcEEEECCChHHHHHHHHHHHHhCCCC-EEEEcCccc-ccccccCccCHHHHHhccCCcEE
Confidence            000 112222 111   5699999999999999999999999  96 3444 3221 1344455677777642  12577


Q ss_pred             EcCCCchhhhHhHHHHHHHhcCceEE-EEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCC-C
Q 024565          150 SNASCTTNCLAPLAKVIHDKFGIVEG-LMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPAL-N  227 (265)
Q Consensus       150 a~p~C~~ta~~~~L~pL~~~~~i~~~-~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~-~  227 (265)
                      ++++|...-+.   ..+.+.+..... .+..+++.|. ++..            ....+-++..  ....+ +.+... .
T Consensus       131 a~~g~~~ipl~---~a~~~~~~~~~~~iv~~i~sgs~-G~~~------------~~~l~e~~~~--~~~ai-~~~gg~~~  191 (312)
T 1nvm_B          131 TCGGQATIPMV---AAVSRVAKVHYAEIVASISSKSA-GPGT------------RANIDEFTET--TSKAI-EVIGGAAK  191 (312)
T ss_dssp             CHHHHHHHHHH---HHHHTTSCEEEEEEEEEEEGGGS-CHHH------------HTCHHHHHHH--HHHHH-HHTTCCSS
T ss_pred             EeCCcccchHH---HHhhhhccchhHhHhhhhhcccc-CCCc------------ccchhhHHHH--HHHHH-HHhhhccC
Confidence            78888554444   444343333322 1223322220 0000            0000001100  00111 122211 1


Q ss_pred             C--ceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHH
Q 024565          228 G--KLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKA  262 (265)
Q Consensus       228 ~--~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~  262 (265)
                      +  -+.|+|+..|++  +..++|+.++ ..+.+++.+
T Consensus       192 ~k~il~~~p~~~p~~--~~~tv~~~~~-~~~~~~~~~  225 (312)
T 1nvm_B          192 GKAIIIMNPAEPPLI--MRDTVYVLSA-AADQAAVAA  225 (312)
T ss_dssp             EEEEEEEECCSSCCC--EEEEEEEEES-SCCHHHHHH
T ss_pred             CCcEEEEecCCCCcc--cceeEEEEeC-CCCHHHHHH
Confidence            1  267899999998  8889999997 777666544

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=98.98  E-value=6.6e-10  Score=100.03  Aligned_cols=93  Identities=18%  Similarity=0.177  Sum_probs=66.6

Q ss_pred             CCccEEEEEccChhHHHHHHHHHc-------CCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEEC
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQ-------RDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG   72 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~-------~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   72 (265)
                      |+++||||||+|.+|+.+++.+..       .|+++|++|+|+..+ .+.++.         .|         |  +   
T Consensus        23 MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~---------~~---------g--~---   79 (393)
T 4fb5_A           23 MKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAG---------EF---------G--F---   79 (393)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHH---------HH---------T--C---
T ss_pred             CCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHH---------Hh---------C--C---
Confidence            778999999999999998887654       467899999998543 222220         01         1  0   


Q ss_pred             CEEEEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           73 EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        73 g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                         .+.+  .|.+++ +++.++|+|+.|||+..+.+.+.+++++|+ +|++
T Consensus        80 ---~~~y--~d~~el-l~~~~iDaV~IatP~~~H~~~a~~al~aGk-hVl~  123 (393)
T 4fb5_A           80 ---EKAT--ADWRAL-IADPEVDVVSVTTPNQFHAEMAIAALEAGK-HVWC  123 (393)
T ss_dssp             ---SEEE--SCHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             ---Ceec--CCHHHH-hcCCCCcEEEECCChHHHHHHHHHHHhcCC-eEEE
Confidence               0133  355555 445689999999999999999999999995 6666

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=98.98  E-value=5.1e-10  Score=99.81  Aligned_cols=92  Identities=18%  Similarity=0.221  Sum_probs=68.5

Q ss_pred             CccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            2 GKVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      +|+||||||+|.+|+. ++.++.+.|+++|++|+|+..+ .+.++.         .|         |  +      .+.+
T Consensus        22 ~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~---------~~---------g--~------~~~y   75 (350)
T 4had_A           22 SMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMAD---------RF---------S--V------PHAF   75 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHH---------HH---------T--C------SEEE
T ss_pred             CccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH---------Hc---------C--C------Ceee
Confidence            4799999999999986 5788999999999999998533 222220         01         1  0      0233


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .|.+++ ++++++|+|+.|||+..+.+.+.+++++|+ +|++
T Consensus        76 --~d~~el-l~~~~iDaV~I~tP~~~H~~~~~~al~aGk-hVl~  115 (350)
T 4had_A           76 --GSYEEM-LASDVIDAVYIPLPTSQHIEWSIKAADAGK-HVVC  115 (350)
T ss_dssp             --SSHHHH-HHCSSCSEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             --CCHHHH-hcCCCCCEEEEeCCCchhHHHHHHHHhcCC-EEEE
Confidence              355555 445679999999999999999999999995 6666

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=98.95  E-value=1.2e-09  Score=98.06  Aligned_cols=91  Identities=21%  Similarity=0.333  Sum_probs=68.7

Q ss_pred             CCccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            1 MGKVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+++||||+|+|.+|+. +++++.++|++++++|+++.  ....+..         +.        +         .+.+
T Consensus         3 m~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~~~---------~~--------~---------~~~~   54 (358)
T 3gdo_A            3 LDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSR--TEEVKRD---------FP--------D---------AEVV   54 (358)
T ss_dssp             TTCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSC--HHHHHHH---------CT--------T---------SEEE
T ss_pred             CCcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCC--HHHHHhh---------CC--------C---------CceE
Confidence            45689999999999997 89999999999999999974  2222100         00        1         1233


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .|++++ +++.++|+|+.|||+..+.+.+..++++|+ +|++
T Consensus        55 --~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~   94 (358)
T 3gdo_A           55 --HELEEI-TNDPAIELVIVTTPSGLHYEHTMACIQAGK-HVVM   94 (358)
T ss_dssp             --SSTHHH-HTCTTCCEEEECSCTTTHHHHHHHHHHTTC-EEEE
T ss_pred             --CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHcCC-eEEE
Confidence              355555 334579999999999999999999999995 6666

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.94  E-value=1.2e-09  Score=98.02  Aligned_cols=91  Identities=20%  Similarity=0.315  Sum_probs=68.6

Q ss_pred             CCccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            1 MGKVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+|+||||+|+|.+|+. +++++.++|+++|++|+++..+  ..+      .   .|.        +         .+.+
T Consensus         3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~------~---~~~--------~---------~~~~   54 (362)
T 3fhl_A            3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKE--LSK------E---RYP--------Q---------ASIV   54 (362)
T ss_dssp             CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCC--GGG------T---TCT--------T---------SEEE
T ss_pred             CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHH--HHH------H---hCC--------C---------CceE
Confidence            45689999999999997 8999999999999999997522  111      0   010        1         1233


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .|.+++ ++..++|+|+.|||+..+.+.+..++++|+ +|++
T Consensus        55 --~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~   94 (362)
T 3fhl_A           55 --RSFKEL-TEDPEIDLIVVNTPDNTHYEYAGMALEAGK-NVVV   94 (362)
T ss_dssp             --SCSHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             --CCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHCCC-eEEE
Confidence              355555 334579999999999999999999999995 6666

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=98.93  E-value=3.9e-10  Score=101.41  Aligned_cols=93  Identities=15%  Similarity=0.114  Sum_probs=68.9

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCC-------eEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEEC
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDD-------VELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG   72 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~-------~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   72 (265)
                      |+++||||||+|.+|+.+++.+.+.|+       .+|++|+|+..+ .+.++.         .|         |  +   
T Consensus         4 M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~---------~~---------g--~---   60 (390)
T 4h3v_A            4 MTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAG---------KL---------G--W---   60 (390)
T ss_dssp             CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHH---------HH---------T--C---
T ss_pred             CCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHH---------Hc---------C--C---
Confidence            788999999999999999999988765       499999998533 121110         01         1  0   


Q ss_pred             CEEEEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           73 EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        73 g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                         ..++  .|.+++ +++.++|+|+.|||+..|.+++.+++++|+ +|++
T Consensus        61 ---~~~~--~d~~~l-l~~~~iDaV~I~tP~~~H~~~~~~al~aGk-hVl~  104 (390)
T 4h3v_A           61 ---STTE--TDWRTL-LERDDVQLVDVCTPGDSHAEIAIAALEAGK-HVLC  104 (390)
T ss_dssp             ---SEEE--SCHHHH-TTCTTCSEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             ---Cccc--CCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHcCC-Ccee
Confidence               0223  345554 345689999999999999999999999994 6766

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=98.92  E-value=1.1e-09  Score=97.32  Aligned_cols=86  Identities=21%  Similarity=0.247  Sum_probs=67.6

Q ss_pred             CCccEEEEEccChhHH-HHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            1 MGKVKIGINGFGRIGR-LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~-~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+++||||+|+|.+|+ .+++.|.++|++++++|+++..+.                        .|         ++.+
T Consensus        23 M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------------------------~g---------~~~~   69 (330)
T 4ew6_A           23 MSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------------------------EG---------VNSY   69 (330)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------------------------TT---------SEEE
T ss_pred             CCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------------------------cC---------CCcc
Confidence            6679999999999999 799999999999999999874211                        01         1222


Q ss_pred             ecCCCCCCCccc-ccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAE-TGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~-~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .|.+++ ++. .++|+|+.|||+..+.+++.+++++|+ +|++
T Consensus        70 --~~~~~l-l~~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~  110 (330)
T 4ew6_A           70 --TTIEAM-LDAEPSIDAVSLCMPPQYRYEAAYKALVAGK-HVFL  110 (330)
T ss_dssp             --SSHHHH-HHHCTTCCEEEECSCHHHHHHHHHHHHHTTC-EEEE
T ss_pred             --CCHHHH-HhCCCCCCEEEEeCCcHHHHHHHHHHHHcCC-cEEE
Confidence              344444 333 579999999999999999999999994 6666

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.89  E-value=1.4e-09  Score=97.60  Aligned_cols=92  Identities=20%  Similarity=0.317  Sum_probs=68.0

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+++||||+|+|.+|+.+++.|.++|++++++|+++..+....+      .            ..|         ++.+ 
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a------~------------~~g---------~~~~-   54 (359)
T 3e18_A            3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAA------A------------QKG---------LKIY-   54 (359)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHH------H------------TTT---------CCBC-
T ss_pred             CCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHH------H------------hcC---------Ccee-
Confidence            45689999999999999999999999999999999753221111      0            001         1122 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .|++++ +.+.++|+|+.|||+..+.+.+..++++|+ +|++
T Consensus        55 -~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-hVl~   94 (359)
T 3e18_A           55 -ESYEAV-LADEKVDAVLIATPNDSHKELAISALEAGK-HVVC   94 (359)
T ss_dssp             -SCHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             -CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-CEEe
Confidence             344444 333579999999999999999999999995 5666

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=98.88  E-value=3e-09  Score=95.38  Aligned_cols=93  Identities=18%  Similarity=0.254  Sum_probs=67.9

Q ss_pred             CCccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MGKVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+++||||||+|.+|+. +++.|.++|++++++|+|+..+. +.++      .   .|.        +         .+.
T Consensus         3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a------~---~~~--------~---------~~~   56 (359)
T 3m2t_A            3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVH------R---FIS--------D---------IPV   56 (359)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGG------G---TSC--------S---------CCE
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH------H---hcC--------C---------Ccc
Confidence            45689999999999996 89999999999999999984321 1111      0   010        0         112


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .|++++ .+..++|+|+.|||+..+.+.+..++++|+ +|++
T Consensus        57 ~--~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~   97 (359)
T 3m2t_A           57 L--DNVPAM-LNQVPLDAVVMAGPPQLHFEMGLLAMSKGV-NVFV   97 (359)
T ss_dssp             E--SSHHHH-HHHSCCSEEEECSCHHHHHHHHHHHHHTTC-EEEE
T ss_pred             c--CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEE
Confidence            2  345554 333578999999999999999999999995 5666

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.88  E-value=2.4e-09  Score=94.81  Aligned_cols=93  Identities=18%  Similarity=0.237  Sum_probs=66.7

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+|+||||+|+|.+|+.+++.|.+.|++++++|+++..+. +.++                  ...+  +      ...+
T Consensus         3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a------------------~~~~--~------~~~~   56 (329)
T 3evn_A            3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFA------------------NKYH--L------PKAY   56 (329)
T ss_dssp             --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---------------------CCC--C------SCEE
T ss_pred             CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH------------------HHcC--C------Cccc
Confidence            4568999999999999999999999999999999875331 1111                  0001  0      0122


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .+++++ ..+.++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        57 --~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~Vl~   96 (329)
T 3evn_A           57 --DKLEDM-LADESIDVIYVATINQDHYKVAKAALLAGK-HVLV   96 (329)
T ss_dssp             --SCHHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             --CCHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHCCC-eEEE
Confidence              344444 233579999999999999999999999995 5666

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.88  E-value=3.3e-09  Score=95.08  Aligned_cols=94  Identities=22%  Similarity=0.209  Sum_probs=68.3

Q ss_pred             CCccEEEEEccChhHHHHHHHHH-cCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~-~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+++||||||+|.+|+.+++.|. ++|++++++|+++..+. +.++..      +            |  +     ....
T Consensus        21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~------~------------g--~-----~~~~   75 (357)
T 3ec7_A           21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK------Y------------A--I-----EAKD   75 (357)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH------H------------T--C-----CCEE
T ss_pred             CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH------h------------C--C-----CCee
Confidence            67899999999999999999999 78999999999985332 211100      0            0  0     0122


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .+++++ ....++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        76 ~--~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~Vl~  116 (357)
T 3ec7_A           76 Y--NDYHDL-INDKDVEVVIITASNEAHADVAVAALNANK-YVFC  116 (357)
T ss_dssp             E--SSHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             e--CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-CEEe
Confidence            2  344444 233579999999999999999999999995 5666

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=98.87  E-value=3e-09  Score=95.08  Aligned_cols=90  Identities=22%  Similarity=0.426  Sum_probs=67.3

Q ss_pred             CccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            2 GKVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      +++||||+|+|.+|+. +++.+.++|++++++|+++.  .....      .   .+.        +         .+.+ 
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~--~~~~~------~---~~~--------~---------~~~~-   56 (352)
T 3kux_A            6 DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSD--ASKVH------A---DWP--------A---------IPVV-   56 (352)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSC--HHHHH------T---TCS--------S---------CCEE-
T ss_pred             CCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCC--HHHHH------h---hCC--------C---------CceE-
Confidence            3589999999999997 89999999999999999974  22111      0   010        1         1122 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .|++++ +...++|+|+.|||+..+.+.+..++++|+ +|++
T Consensus        57 -~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hV~~   96 (352)
T 3kux_A           57 -SDPQML-FNDPSIDLIVIPTPNDTHFPLAQSALAAGK-HVVV   96 (352)
T ss_dssp             -SCHHHH-HHCSSCCEEEECSCTTTHHHHHHHHHHTTC-EEEE
T ss_pred             -CCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHCCC-cEEE
Confidence             345554 334579999999999999999999999994 6666

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=98.86  E-value=2.8e-09  Score=95.15  Aligned_cols=92  Identities=22%  Similarity=0.322  Sum_probs=68.3

Q ss_pred             ccEEEEEccChhHH-HHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGR-LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~-~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||||+|+|.+|+ .+++++.++|+++|++|+++. ..+.++..      ++.         .+         ++.+  
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~------~~~---------~~---------~~~~--   54 (349)
T 3i23_A            2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAP------FKE---------KG---------VNFT--   54 (349)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHH------HHT---------TT---------CEEE--
T ss_pred             eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHh------hCC---------CC---------CeEE--
Confidence            69999999999998 789999999999999999975 33222210      000         01         1233  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+++++ +...++|+|+.|||+..+.+.+..++++| |+|++
T Consensus        55 ~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aG-k~Vl~   94 (349)
T 3i23_A           55 ADLNEL-LTDPEIELITICTPAHTHYDLAKQAILAG-KSVIV   94 (349)
T ss_dssp             SCTHHH-HSCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEE
T ss_pred             CCHHHH-hcCCCCCEEEEeCCcHHHHHHHHHHHHcC-CEEEE
Confidence            456555 33457999999999999999999999999 46666

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.86  E-value=2.4e-09  Score=95.71  Aligned_cols=92  Identities=11%  Similarity=0.102  Sum_probs=67.3

Q ss_pred             CCccEEEEEccChhHH-HHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MGKVKIGINGFGRIGR-LVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~-~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+++||||||+|.+|+ .+++.|.++|++++++|+++..+ .+.++.                  ..|         ++.
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~------------------~~g---------~~~   77 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTE------------------RFG---------GEP   77 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHH------------------HHC---------SEE
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHH------------------HcC---------CCC
Confidence            6679999999999998 79999999999999999997422 111110                  001         112


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .+++++ +.+.++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        78 ~--~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~Vl~  118 (350)
T 3rc1_A           78 V--EGYPAL-LERDDVDAVYVPLPAVLHAEWIDRALRAGK-HVLA  118 (350)
T ss_dssp             E--ESHHHH-HTCTTCSEEEECCCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             c--CCHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHCCC-cEEE
Confidence            2  244444 233579999999999999999999999995 5666

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=98.86  E-value=3.9e-09  Score=94.06  Aligned_cols=91  Identities=14%  Similarity=0.223  Sum_probs=66.8

Q ss_pred             ccEEEEEccChhHHH-HHH-HHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRL-VAR-VILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~-l~~-~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+||||+|+|.+|+. +++ ++..+|++++++|+++..+....+         ..+        .+         ++.+ 
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~---------~~~--------~~---------~~~~-   54 (345)
T 3f4l_A            2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA---------PIY--------SH---------IHFT-   54 (345)
T ss_dssp             CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGS---------GGG--------TT---------CEEE-
T ss_pred             ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHH---------Hhc--------CC---------CceE-
Confidence            699999999999995 788 667889999999999853321110         001        11         1233 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .|++++ ++..++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        55 -~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~Vl~   94 (345)
T 3f4l_A           55 -SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAGK-NVLV   94 (345)
T ss_dssp             -SCTHHH-HTCTTEEEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             -CCHHHH-hcCCCCCEEEEcCChHHHHHHHHHHHHcCC-cEEE
Confidence             455555 334579999999999999999999999994 6666

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.86  E-value=3.7e-09  Score=94.98  Aligned_cols=89  Identities=24%  Similarity=0.315  Sum_probs=66.7

Q ss_pred             ccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||||+|+|.+|+. +++++.++|+++|++|+++..  .....         .+.        +         .+.+  
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~---------~~~--------~---------~~~~--   56 (364)
T 3e82_A            7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDE--EKVKR---------DLP--------D---------VTVI--   56 (364)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCH--HHHHH---------HCT--------T---------SEEE--
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHh---------hCC--------C---------CcEE--
Confidence            589999999999997 899999999999999999842  22110         010        1         1222  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .|++++ +++.++|+|+.|||+..+.+.+..++++|+ +|++
T Consensus        57 ~~~~~l-l~~~~~D~V~i~tp~~~H~~~~~~al~aGk-~Vl~   96 (364)
T 3e82_A           57 ASPEAA-VQHPDVDLVVIASPNATHAPLARLALNAGK-HVVV   96 (364)
T ss_dssp             SCHHHH-HTCTTCSEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             CCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHCCC-cEEE
Confidence            344444 333579999999999999999999999995 5666

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.84  E-value=8.8e-09  Score=91.01  Aligned_cols=89  Identities=20%  Similarity=0.268  Sum_probs=68.1

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+++||||+|+|.+|+.+++.+.++|++++++++++.... .++           +         |         +..+ 
T Consensus         1 M~~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~~-----------~---------g---------v~~~-   49 (320)
T 1f06_A            1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-DTK-----------T---------P---------VFDV-   49 (320)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-SSS-----------S---------C---------EEEG-
T ss_pred             CCCCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hhc-----------C---------C---------Ccee-
Confidence            8889999999999999999999999999999999874221 100           0         1         2222 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcC
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA  125 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~  125 (265)
                       .|.+++-   .++|+|++|+|+..+.+.+..++++|+ +++++.
T Consensus        50 -~d~~~ll---~~~DvViiatp~~~h~~~~~~al~aG~-~Vv~ek   89 (320)
T 1f06_A           50 -ADVDKHA---DDVDVLFLCMGSATDIPEQAPKFAQFA-CTVDTY   89 (320)
T ss_dssp             -GGGGGTT---TTCSEEEECSCTTTHHHHHHHHHTTTS-EEECCC
T ss_pred             -CCHHHHh---cCCCEEEEcCCcHHHHHHHHHHHHCCC-EEEECC
Confidence             3445541   579999999999999999999999996 455543

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=98.84  E-value=1.1e-09  Score=94.57  Aligned_cols=97  Identities=26%  Similarity=0.375  Sum_probs=66.2

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |.|+||+|+|+ |++|+.+++++.++|+++|+++.++..+.. ..    .|  .+.+. +.   ..|         +.++
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~-~G----~d--~gel~-g~---~~g---------v~v~   64 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQ-LG----QD--AGAFL-GK---QTG---------VALT   64 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTT-TT----SB--TTTTT-TC---CCS---------CBCB
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCccc-cc----cc--HHHHh-CC---CCC---------ceec
Confidence            77899999997 999999999999999999999998752210 00    00  00000 00   001         2222


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .|.+++   ..++|+||++|++..+.+.++.+++.|++ +|+
T Consensus        65 --~dl~~l---l~~~DVVIDfT~p~a~~~~~~~al~~G~~-vVi  102 (272)
T 4f3y_A           65 --DDIERV---CAEADYLIDFTLPEGTLVHLDAALRHDVK-LVI  102 (272)
T ss_dssp             --CCHHHH---HHHCSEEEECSCHHHHHHHHHHHHHHTCE-EEE
T ss_pred             --CCHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHcCCC-EEE
Confidence              344443   14689999999999999999999999974 555

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.82  E-value=3.4e-09  Score=93.91  Aligned_cols=93  Identities=14%  Similarity=0.156  Sum_probs=67.7

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+++||||+|+|.+|+.+++.|.++|++++++|+++..+. +.++.      .+            |  +      ...+
T Consensus         3 m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~------~~------------~--~------~~~~   56 (330)
T 3e9m_A            3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAK------EL------------A--I------PVAY   56 (330)
T ss_dssp             CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHH------HT------------T--C------CCCB
T ss_pred             CCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHH------Hc------------C--C------Ccee
Confidence            4568999999999999999999999999999999985332 21110      00            1  0      0111


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .|++++ ..+.++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        57 --~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~vl~   96 (330)
T 3e9m_A           57 --GSYEEL-CKDETIDIIYIPTYNQGHYSAAKLALSQGK-PVLL   96 (330)
T ss_dssp             --SSHHHH-HHCTTCSEEEECCCGGGHHHHHHHHHHTTC-CEEE
T ss_pred             --CCHHHH-hcCCCCCEEEEcCCCHHHHHHHHHHHHCCC-eEEE
Confidence              233443 223579999999999999999999999995 5666

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.81  E-value=3.8e-09  Score=94.43  Aligned_cols=91  Identities=13%  Similarity=0.174  Sum_probs=67.1

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      +++||||+|+|.+|+.+++.|.++|++++++|+++..+ .+.++..         +         |         ++.+ 
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~---------~---------g---------~~~~-   55 (354)
T 3db2_A            4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKR---------Y---------N---------CAGD-   55 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHH---------H---------T---------CCCC-
T ss_pred             CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH---------c---------C---------CCCc-
Confidence            46899999999999999999999999999999998532 1111100         0         1         0111 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .+++++ ..+.++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        56 -~~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~vl~   95 (354)
T 3db2_A           56 -ATMEAL-LAREDVEMVIITVPNDKHAEVIEQCARSGK-HIYV   95 (354)
T ss_dssp             -SSHHHH-HHCSSCCEEEECSCTTSHHHHHHHHHHTTC-EEEE
T ss_pred             -CCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHcCC-EEEE
Confidence             234443 223579999999999999999999999995 5666

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=98.80  E-value=5.7e-09  Score=91.60  Aligned_cols=88  Identities=18%  Similarity=0.210  Sum_probs=62.7

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+++||||+|+|.+|+.+++.|.++|++++++|+++..+.  ..      .    +         |  +     ....+ 
T Consensus         7 M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~--~~------~----~---------g--~-----~~~~~-   57 (304)
T 3bio_A            7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAE--VP------F----E---------L--Q-----PFRVV-   57 (304)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------------------C---------C--T-----TSCEE-
T ss_pred             CCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHH--HH------H----c---------C--C-----CcCCH-
Confidence            4579999999999999999999999999999999874221  10      0    0         1  0     00011 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .+..+.    .++|+||+|||+..+.+.+..++++|+ ++++
T Consensus        58 -~~l~~~----~~~DvViiatp~~~h~~~~~~al~aG~-~Vi~   94 (304)
T 3bio_A           58 -SDIEQL----ESVDVALVCSPSREVERTALEILKKGI-CTAD   94 (304)
T ss_dssp             -SSGGGS----SSCCEEEECSCHHHHHHHHHHHHTTTC-EEEE
T ss_pred             -HHHHhC----CCCCEEEECCCchhhHHHHHHHHHcCC-eEEE
Confidence             222222    579999999999999999999999996 4554

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.80  E-value=6.4e-09  Score=92.53  Aligned_cols=92  Identities=26%  Similarity=0.428  Sum_probs=67.2

Q ss_pred             CC-ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~-~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+ |+||||+|+|.+|+.+++.|.++|++++++|+++..+. +.++      .   .|         |         ...
T Consensus         1 M~~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a------~---~~---------g---------~~~   53 (344)
T 3euw_A            1 MSLTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLA------E---AN---------G---------AEA   53 (344)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHH------H---TT---------T---------CEE
T ss_pred             CCCceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH------H---Hc---------C---------Cce
Confidence            53 68999999999999999999999999999999975321 1111      0   00         1         122


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .+++++ +.+.++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        54 ~--~~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~v~~   94 (344)
T 3euw_A           54 V--ASPDEV-FARDDIDGIVIGSPTSTHVDLITRAVERGI-PALC   94 (344)
T ss_dssp             E--SSHHHH-TTCSCCCEEEECSCGGGHHHHHHHHHHTTC-CEEE
T ss_pred             e--CCHHHH-hcCCCCCEEEEeCCchhhHHHHHHHHHcCC-cEEE
Confidence            2  344444 233579999999999999999999999995 5666

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=98.79  E-value=2.9e-09  Score=97.09  Aligned_cols=91  Identities=16%  Similarity=0.177  Sum_probs=66.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC--------CeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE   73 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p--------~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g   73 (265)
                      ++||||||+|.+|+.+++.+.+.+        +++|++|+|+..+ .+.++.         .|         |      .
T Consensus        26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~---------~~---------~------~   81 (412)
T 4gqa_A           26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAA---------KL---------G------A   81 (412)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHH---------HH---------T------C
T ss_pred             cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHH---------Hc---------C------C
Confidence            589999999999999999987653        6899999998533 222210         01         1      0


Q ss_pred             EEEEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           74 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .+++  .|.+++ +++.++|+|+.|||+..+.+.+.+++++|+ +|++
T Consensus        82 --~~~y--~d~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~  125 (412)
T 4gqa_A           82 --EKAY--GDWREL-VNDPQVDVVDITSPNHLHYTMAMAAIAAGK-HVYC  125 (412)
T ss_dssp             --SEEE--SSHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             --CeEE--CCHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHcCC-CeEe
Confidence              1233  355555 445689999999999999999999999995 6666

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=98.78  E-value=8.4e-09  Score=95.08  Aligned_cols=100  Identities=24%  Similarity=0.278  Sum_probs=68.9

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+++||||||+|.+|+.+++.|.++|++++++|+++..+ .+.++..+      ..+         |  +  .  ..+++
T Consensus        18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~------~~~---------g--~--~--~~~~~   76 (444)
T 2ixa_A           18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEIL------KKN---------G--K--K--PAKVF   76 (444)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHH------HHT---------T--C--C--CCEEE
T ss_pred             CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHH------Hhc---------C--C--C--CCcee
Confidence            567999999999999999999999999999999998532 12111000      000         0  0  0  01222


Q ss_pred             e--cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 G--VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~--~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .  ..|++++ ++..++|+|+.|||+..+.+.+.+++++|+ +|++
T Consensus        77 ~~~~~~~~~l-l~~~~vD~V~i~tp~~~h~~~~~~al~aGk-hV~~  120 (444)
T 2ixa_A           77 GNGNDDYKNM-LKDKNIDAVFVSSPWEWHHEHGVAAMKAGK-IVGM  120 (444)
T ss_dssp             CSSTTTHHHH-TTCTTCCEEEECCCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             ccCCCCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEE
Confidence            1  0144444 333579999999999999999999999995 6666

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.78  E-value=8.7e-09  Score=91.69  Aligned_cols=92  Identities=22%  Similarity=0.278  Sum_probs=67.2

Q ss_pred             ccEEEEEccChhHHHHHHHHH-cCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~-~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+||||+|+|.+|+.+++.|. ++|++++++|+++..+ .+.++      ..+            |  +     ....+ 
T Consensus         2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~------~~~------------g--~-----~~~~~-   55 (344)
T 3mz0_A            2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVV------EQY------------Q--L-----NATVY-   55 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHH------HHT------------T--C-----CCEEE-
T ss_pred             eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHH------HHh------------C--C-----CCeee-
Confidence            589999999999999999999 7899999999998532 12111      001            1  0     01222 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .+++++ .+..++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        56 -~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk-~vl~   95 (344)
T 3mz0_A           56 -PNDDSL-LADENVDAVLVTSWGPAHESSVLKAIKAQK-YVFC   95 (344)
T ss_dssp             -SSHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             -CCHHHH-hcCCCCCEEEECCCchhHHHHHHHHHHCCC-cEEE
Confidence             344444 233569999999999999999999999995 6666

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.77  E-value=7.8e-09  Score=91.99  Aligned_cols=91  Identities=23%  Similarity=0.348  Sum_probs=67.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||||||+|.+|+.+++.|.++|++++++|+++..+. +.++.         .+         +  +      ...+  
T Consensus         2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~---------~~---------~--~------~~~~--   53 (344)
T 3ezy_A            2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKE---------KL---------G--V------EKAY--   53 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHH---------HH---------T--C------SEEE--
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH---------Hh---------C--C------Ccee--
Confidence            68999999999999999999999999999999985321 11110         00         1  0      0122  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .|++++ +.+.++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        54 ~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~v~~   93 (344)
T 3ezy_A           54 KDPHEL-IEDPNVDAVLVCSSTNTHSELVIACAKAKK-HVFC   93 (344)
T ss_dssp             SSHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             CCHHHH-hcCCCCCEEEEcCCCcchHHHHHHHHhcCC-eEEE
Confidence            344444 233579999999999999999999999995 5666

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.76  E-value=7.7e-09  Score=91.52  Aligned_cols=89  Identities=27%  Similarity=0.359  Sum_probs=67.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||||+|+|.+|+.+++.|.++|++++++|+++..+. +.++.                  ..|         ++ +  
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~------------------~~~---------~~-~--   52 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAG------------------AYG---------CE-V--   52 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH------------------HTT---------CE-E--
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHH------------------HhC---------CC-c--
Confidence            68999999999999999999999999999999985321 11110                  011         12 2  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+++++ +.+.++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        53 ~~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~v~~   92 (331)
T 4hkt_A           53 RTIDAI-EAAADIDAVVICTPTDTHADLIERFARAGK-AIFC   92 (331)
T ss_dssp             CCHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             CCHHHH-hcCCCCCEEEEeCCchhHHHHHHHHHHcCC-cEEE
Confidence            344444 233479999999999999999999999994 5666

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.76  E-value=6.5e-09  Score=92.88  Aligned_cols=91  Identities=19%  Similarity=0.203  Sum_probs=67.9

Q ss_pred             CccEEEEEccChhHHHHHHHHHcC-CCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            2 GKVKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      +|+||||+|+|.+|+.+++.|.++ |++++++|+++..+. +.++.                  ..|         ++.+
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~------------------~~~---------~~~~   64 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVE------------------RTG---------ARGH   64 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH------------------HHC---------CEEE
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHH------------------HcC---------Ccee
Confidence            468999999999999999999998 899999999985321 11110                  001         1233


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .|++++ +++.++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        65 --~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~v~~  104 (354)
T 3q2i_A           65 --ASLTDM-LAQTDADIVILTTPSGLHPTQSIECSEAGF-HVMT  104 (354)
T ss_dssp             --SCHHHH-HHHCCCSEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             --CCHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHCCC-CEEE
Confidence              345554 333579999999999999999999999994 5666

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.75  E-value=4.1e-09  Score=92.33  Aligned_cols=90  Identities=17%  Similarity=0.286  Sum_probs=66.0

Q ss_pred             CCccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MGKVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+++||||+|+|.+|+. +++.|.++|++++++|+++..+ .+.++.         .+         |         ++.
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~---------~~---------~---------~~~   56 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICS---------DY---------R---------IMP   56 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHH---------HH---------T---------CCB
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH---------Hc---------C---------CCC
Confidence            66799999999999996 9999999999999999998533 121110         00         1         011


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .+++++ .  .++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        57 ~--~~~~~l-l--~~~D~V~i~tp~~~h~~~~~~al~~gk-~vl~   95 (308)
T 3uuw_A           57 F--DSIESL-A--KKCDCIFLHSSTETHYEIIKILLNLGV-HVYV   95 (308)
T ss_dssp             C--SCHHHH-H--TTCSEEEECCCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             c--CCHHHH-H--hcCCEEEEeCCcHhHHHHHHHHHHCCC-cEEE
Confidence            1  344444 1  379999999999999999999999995 5666

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=98.74  E-value=1.2e-08  Score=88.95  Aligned_cols=86  Identities=17%  Similarity=0.217  Sum_probs=65.3

Q ss_pred             CccEEEEEccChhHHHHHHHHHc---CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            2 GKVKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~---~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      +|+||||+|+|.+|+.+++.+.+   ++++++++|+++....+                      ..|         ++ 
T Consensus         6 ~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~----------------------~~g---------~~-   53 (294)
T 1lc0_A            6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGS----------------------LDE---------VR-   53 (294)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCE----------------------ETT---------EE-
T ss_pred             CcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHHH----------------------HcC---------CC-
Confidence            47899999999999999999987   68899999998631110                      011         11 


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .+++++ .++.++|+|+.|||+..+.+.+..++++|+ +|++
T Consensus        54 ~--~~~~el-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~   94 (294)
T 1lc0_A           54 Q--ISLEDA-LRSQEIDVAYICSESSSHEDYIRQFLQAGK-HVLV   94 (294)
T ss_dssp             B--CCHHHH-HHCSSEEEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             C--CCHHHH-hcCCCCCEEEEeCCcHhHHHHHHHHHHCCC-cEEE
Confidence            1  244444 233579999999999999999999999995 6666

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=98.74  E-value=1.3e-08  Score=90.29  Aligned_cols=91  Identities=20%  Similarity=0.222  Sum_probs=66.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC--CeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p--~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+||||+|+|.+|+.+++.|.+.|  ++++++|+++..+ .+.++.         .|         |  +      ...+
T Consensus         2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~---------~~---------~--~------~~~~   55 (334)
T 3ohs_X            2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQ---------KH---------D--I------PKAY   55 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHH---------HH---------T--C------SCEE
T ss_pred             ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHH---------Hc---------C--C------Cccc
Confidence            699999999999999999999877  4899999998532 122110         00         1  0      0122


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .|.+++ ..+.++|+|+.|||+..+.+.+..++++| |+|++
T Consensus        56 --~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~~G-khVl~   95 (334)
T 3ohs_X           56 --GSYEEL-AKDPNVEVAYVGTQHPQHKAAVMLCLAAG-KAVLC   95 (334)
T ss_dssp             --SSHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHHTT-CEEEE
T ss_pred             --CCHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHhcC-CEEEE
Confidence              344444 33357999999999999999999999999 46666

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.73  E-value=1.3e-08  Score=91.27  Aligned_cols=96  Identities=13%  Similarity=0.200  Sum_probs=67.1

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+++||||+|+|.+|+.+++.|.++|++++++|+++..+. +.++      ..++..        .+         ...+
T Consensus         4 ~~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a------~~~~~~--------~~---------~~~~   60 (362)
T 1ydw_A            4 ETQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFA------TANNYP--------ES---------TKIH   60 (362)
T ss_dssp             --CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHH------HHTTCC--------TT---------CEEE
T ss_pred             CCceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHH------HHhCCC--------CC---------Ceee
Confidence            3568999999999999999999999999999999975321 1111      001000        00         1222


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .+++++ +.+.++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        61 --~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~V~~  100 (362)
T 1ydw_A           61 --GSYESL-LEDPEIDALYVPLPTSLHVEWAIKAAEKGK-HILL  100 (362)
T ss_dssp             --SSHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHTTTC-EEEE
T ss_pred             --CCHHHH-hcCCCCCEEEEcCChHHHHHHHHHHHHCCC-eEEE
Confidence              244444 223469999999999999999999999995 5666

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=98.71  E-value=2.1e-08  Score=92.23  Aligned_cols=97  Identities=12%  Similarity=0.075  Sum_probs=68.6

Q ss_pred             CCccEEEEEccChhHH-HHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MGKVKIGINGFGRIGR-LVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~-~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+++||||||+|.+|+ .+++.|.+++++++++|+++..+ .+.++      ..++.-                ...+..
T Consensus        81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a------~~~g~~----------------~~~~~~  138 (433)
T 1h6d_A           81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVA------AEYGVD----------------PRKIYD  138 (433)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHH------HHTTCC----------------GGGEEC
T ss_pred             CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHH------HHhCCC----------------cccccc
Confidence            5679999999999997 89999999999999999997532 11111      001000                000112


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .|.+++ .++.++|+|+.|||+..+.+.+..++++|+ +|++
T Consensus       139 ~--~~~~~l-l~~~~vD~V~iatp~~~h~~~~~~al~aGk-~Vl~  179 (433)
T 1h6d_A          139 Y--SNFDKI-AKDPKIDAVYIILPNSLHAEFAIRAFKAGK-HVMC  179 (433)
T ss_dssp             S--SSGGGG-GGCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             c--CCHHHH-hcCCCCCEEEEcCCchhHHHHHHHHHHCCC-cEEE
Confidence            2  345555 333579999999999999999999999995 5666

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.68  E-value=2.7e-08  Score=84.43  Aligned_cols=81  Identities=16%  Similarity=0.230  Sum_probs=58.8

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+|+||+|+|+|++|+.+++++.++++ +|+++.++..+..                       .|         ++++ 
T Consensus         1 M~MmkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~~~~~~-----------------------~g---------v~v~-   46 (243)
T 3qy9_A            1 MASMKILLIGYGAMNQRVARLAEEKGH-EIVGVIENTPKAT-----------------------TP---------YQQY-   46 (243)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEECSSCC-------------------------CC---------SCBC-
T ss_pred             CCceEEEEECcCHHHHHHHHHHHhCCC-EEEEEEecCcccc-----------------------CC---------Ccee-
Confidence            778999999999999999999999999 9999998742210                       01         1222 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .|++++   . ++|+|+++|.+....+.++  ++.|+. +|+
T Consensus        47 -~dl~~l---~-~~DVvIDft~p~a~~~~~~--l~~g~~-vVi   81 (243)
T 3qy9_A           47 -QHIADV---K-GADVAIDFSNPNLLFPLLD--EDFHLP-LVV   81 (243)
T ss_dssp             -SCTTTC---T-TCSEEEECSCHHHHHHHHT--SCCCCC-EEE
T ss_pred             -CCHHHH---h-CCCEEEEeCChHHHHHHHH--HhcCCc-eEe
Confidence             456665   2 6899999888777777775  788874 444

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=98.67  E-value=2.3e-08  Score=88.66  Aligned_cols=92  Identities=13%  Similarity=0.158  Sum_probs=63.3

Q ss_pred             CCccEEEEEccChhHH-HHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MGKVKIGINGFGRIGR-LVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~-~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+++||||||+|.+|. .+++.|. ++++++++|+|+..+ .+.++.      .++           +         .+.
T Consensus         2 M~~~rvgiiG~G~~~~~~~~~~l~-~~~~~lvav~d~~~~~~~~~a~------~~~-----------~---------~~~   54 (336)
T 2p2s_A            2 MKKIRFAAIGLAHNHIYDMCQQLI-DAGAELAGVFESDSDNRAKFTS------LFP-----------S---------VPF   54 (336)
T ss_dssp             --CCEEEEECCSSTHHHHHHHHHH-HTTCEEEEEECSCTTSCHHHHH------HST-----------T---------CCB
T ss_pred             CCccEEEEECCChHHHHHhhhhhc-CCCcEEEEEeCCCHHHHHHHHH------hcC-----------C---------Ccc
Confidence            7789999999999996 6777775 578999999998533 222210      010           0         011


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .|++++ +++.++|+|+.|||+..+.+.+..++++|+ +|++
T Consensus        55 ~--~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-hVl~   95 (336)
T 2p2s_A           55 A--ASAEQL-ITDASIDLIACAVIPCDRAELALRTLDAGK-DFFT   95 (336)
T ss_dssp             C--SCHHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             c--CCHHHH-hhCCCCCEEEEeCChhhHHHHHHHHHHCCC-cEEE
Confidence            1  234443 233579999999999999999999999995 6666

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=98.67  E-value=3.8e-08  Score=86.57  Aligned_cols=90  Identities=20%  Similarity=0.283  Sum_probs=65.9

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||||||+ |++|+.+++.+.+. ++++++|+|+..+....+      .   .+.        +         .+.+  
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~~~~------~---~~~--------~---------~~~~--   53 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEV-GGVLVASLDPATNVGLVD------S---FFP--------E---------AEFF--   53 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCGGGG------G---TCT--------T---------CEEE--
T ss_pred             ceEEEEECCChHHHHHHHHHHHhC-CCEEEEEEcCCHHHHHHH------h---hCC--------C---------Ccee--
Confidence            699999999 89999999999987 589999999853322111      1   011        1         1233  


Q ss_pred             CCCCCCCc--------ccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPW--------AETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~--------~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+.+++ +        ++.++|+|+.|||+..+.+++.+++++|+ +|++
T Consensus        54 ~~~~~l-l~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~al~aGk-hVl~  101 (312)
T 3o9z_A           54 TEPEAF-EAYLEDLRDRGEGVDYLSIASPNHLHYPQIRMALRLGA-NALS  101 (312)
T ss_dssp             SCHHHH-HHHHHHHHHTTCCCSEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             CCHHHH-HHHhhhhcccCCCCcEEEECCCchhhHHHHHHHHHCCC-eEEE
Confidence            234443 2        24679999999999999999999999995 6666

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.66  E-value=2.5e-08  Score=87.73  Aligned_cols=90  Identities=18%  Similarity=0.273  Sum_probs=64.6

Q ss_pred             CCccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MGKVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+++||||+|+|.+|+. +++.|.++|++++++|+++..+. +.++..         +         |         ++.
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~---------~---------g---------~~~   55 (319)
T 1tlt_A            3 LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES---------W---------R---------IPY   55 (319)
T ss_dssp             --CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH---------H---------T---------CCB
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH---------c---------C---------CCc
Confidence            44689999999999996 99999989999999999975332 211100         0         1         011


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .+.+++   ..++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        56 ~--~~~~~l---~~~~D~V~i~tp~~~h~~~~~~al~~G~-~v~~   94 (319)
T 1tlt_A           56 A--DSLSSL---AASCDAVFVHSSTASHFDVVSTLLNAGV-HVCV   94 (319)
T ss_dssp             C--SSHHHH---HTTCSEEEECSCTTHHHHHHHHHHHTTC-EEEE
T ss_pred             c--CcHHHh---hcCCCEEEEeCCchhHHHHHHHHHHcCC-eEEE
Confidence            1  233333   2579999999999999999999999995 5555

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=98.66  E-value=1.9e-08  Score=90.28  Aligned_cols=92  Identities=15%  Similarity=0.220  Sum_probs=63.2

Q ss_pred             CCccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MGKVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+++||||+|+|.+|.. ++..+. +|+++|++|+|+..+. +.++      ..++           .         .+.
T Consensus        24 m~~irvgiiG~G~~~~~~~~~~~~-~~~~~lvav~d~~~~~a~~~a------~~~~-----------~---------~~~   76 (361)
T 3u3x_A           24 MDELRFAAVGLNHNHIYGQVNCLL-RAGARLAGFHEKDDALAAEFS------AVYA-----------D---------ARR   76 (361)
T ss_dssp             --CCEEEEECCCSTTHHHHHHHHH-HTTCEEEEEECSCHHHHHHHH------HHSS-----------S---------CCE
T ss_pred             ccCcEEEEECcCHHHHHHHHHHhh-cCCcEEEEEEcCCHHHHHHHH------HHcC-----------C---------Ccc
Confidence            45689999999999964 566655 6899999999985321 2221      0010           0         112


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .|.+++ +++.++|+|+.|||+..+.+.+..++++|+ +|++
T Consensus        77 ~--~~~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~  117 (361)
T 3u3x_A           77 I--ATAEEI-LEDENIGLIVSAAVSSERAELAIRAMQHGK-DVLV  117 (361)
T ss_dssp             E--SCHHHH-HTCTTCCEEEECCCHHHHHHHHHHHHHTTC-EEEE
T ss_pred             c--CCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHCCC-eEEE
Confidence            2  344444 334579999999999999999999999995 6666

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.65  E-value=3.6e-08  Score=87.57  Aligned_cols=92  Identities=16%  Similarity=0.247  Sum_probs=65.9

Q ss_pred             CccEEEEEccChhHHHHHHHHH-cCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            2 GKVKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~-~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      +++||||+|+|.+|+.+++.|. +++++++++|+++..+. +.++      .   .+         |  .      ..++
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a------~---~~---------g--~------~~~~   60 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAK------N---EL---------G--V------ETTY   60 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHH------H---TT---------C--C------SEEE
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHH------H---Hh---------C--C------Cccc
Confidence            4689999999999999999998 78999999999875321 1111      0   00         1  0      0122


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .+++++ .+..++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        61 --~~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~G~-~v~~  100 (346)
T 3cea_A           61 --TNYKDM-IDTENIDAIFIVAPTPFHPEMTIYAMNAGL-NVFC  100 (346)
T ss_dssp             --SCHHHH-HTTSCCSEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             --CCHHHH-hcCCCCCEEEEeCChHhHHHHHHHHHHCCC-EEEE
Confidence              233333 222479999999999999999999999995 5655

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.64  E-value=2.7e-08  Score=87.41  Aligned_cols=90  Identities=18%  Similarity=0.204  Sum_probs=66.5

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      +++||||+|+|.+|+.+++.|.++|++++++++++..+  ....          +.        .       + ++.+  
T Consensus         9 ~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~--~~~~----------~~--------~-------~-~~~~--   58 (315)
T 3c1a_A            9 SPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPD--NLAL----------VP--------P-------G-CVIE--   58 (315)
T ss_dssp             CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHH--HHTT----------CC--------T-------T-CEEE--
T ss_pred             CcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHH--HHHH----------HH--------h-------h-Cccc--
Confidence            36899999999999999999999999999999997422  1110          00        0       0 1222  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+++++ .++.++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        59 ~~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk-~v~~   98 (315)
T 3c1a_A           59 SDWRSV-VSAPEVEAVIIATPPATHAEITLAAIASGK-AVLV   98 (315)
T ss_dssp             SSTHHH-HTCTTCCEEEEESCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             CCHHHH-hhCCCCCEEEEeCChHHHHHHHHHHHHCCC-cEEE
Confidence            344444 223479999999999999999999999995 5665

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=98.63  E-value=3.5e-08  Score=87.73  Aligned_cols=91  Identities=21%  Similarity=0.181  Sum_probs=67.4

Q ss_pred             ccEEEEEccC-hhHHHHHHHHHcC-CCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            3 KVKIGINGFG-RIGRLVARVILQR-DDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         3 ~i~vgI~G~G-~~G~~l~~~L~~~-p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      ++||||+|+| .+|+.+++.|.+. |++++++|+|+..+ .+.++.         .|         +  +      .+++
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~---------~~---------~--~------~~~~   71 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAK---------MV---------G--N------PAVF   71 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHH---------HH---------S--S------CEEE
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHH---------Hh---------C--C------Cccc
Confidence            6899999999 8999999999998 89999999998532 111110         00         1  0      1223


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .|.+++ +++.++|+|+.|||+..+.+.+..++++|+ +|++
T Consensus        72 --~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~  111 (340)
T 1zh8_A           72 --DSYEEL-LESGLVDAVDLTLPVELNLPFIEKALRKGV-HVIC  111 (340)
T ss_dssp             --SCHHHH-HHSSCCSEEEECCCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             --CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHCCC-cEEE
Confidence              345444 334579999999999999999999999995 6666

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=98.63  E-value=5.1e-08  Score=89.40  Aligned_cols=109  Identities=13%  Similarity=0.267  Sum_probs=68.5

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCC-cccccceeeeCC-ceEE---ECCEE
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHG-QWKHHELKVKDD-KTLL---FGEKP   75 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~---~~g~~   75 (265)
                      +++||||+|+|.+|+.+++.+.+.|++++++|+|+..+. +..+     ...|+ .+.   +...+. ..+.   -.+ .
T Consensus        22 k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a-----~~~yG~~~~---~~~~~~~~~i~~a~~~g-~   92 (446)
T 3upl_A           22 KPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAI-----RTAYGDEEN---AREATTESAMTRAIEAG-K   92 (446)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHH-----HHHHSSSTT---EEECSSHHHHHHHHHTT-C
T ss_pred             CceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHH-----HHhcCCccc---cccccchhhhhhhhccC-C
Confidence            469999999999999999999999999999999985332 1111     00001 010   000000 0000   000 1


Q ss_pred             EEEEecCCCCCCCcccccccEEEEecCC-cccHHhHHHHHhCCCCeEEE
Q 024565           76 VTVFGVRNPEEIPWAETGAEYVVESTGV-FTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~DvV~~at~~-~~~~~~~~~~~~~G~~~vvi  123 (265)
                      ..++  .|.+++ +++.++|+|++|||+ ..+.+++..++++|+ +|++
T Consensus        93 ~~v~--~D~eeL-L~d~dIDaVviaTp~p~~H~e~a~~AL~AGK-HVv~  137 (446)
T 3upl_A           93 IAVT--DDNDLI-LSNPLIDVIIDATGIPEVGAETGIAAIRNGK-HLVM  137 (446)
T ss_dssp             EEEE--SCHHHH-HTCTTCCEEEECSCCHHHHHHHHHHHHHTTC-EEEE
T ss_pred             ceEE--CCHHHH-hcCCCCCEEEEcCCChHHHHHHHHHHHHcCC-cEEe
Confidence            2333  455555 344679999999987 467899999999995 5654

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=98.62  E-value=5.9e-08  Score=85.55  Aligned_cols=91  Identities=22%  Similarity=0.184  Sum_probs=65.8

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||||||+ |++|..+++.+.+. +.++++++|+..+...++      ..   ++        +         .+.+  
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~~~~------~~---~~--------~---------~~~~--   53 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDT-GNCLVSAYDINDSVGIID------SI---SP--------Q---------SEFF--   53 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCGGGG------GT---CT--------T---------CEEE--
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhC-CCEEEEEEcCCHHHHHHH------hh---CC--------C---------CcEE--
Confidence            699999999 89999999999987 699999999853322111      10   11        1         1222  


Q ss_pred             CCCCCCC-----c---ccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIP-----W---AETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~-----~---~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+.+++.     |   .+.++|+|+.|||+..+.+++.+++++|+ +|++
T Consensus        54 ~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~~H~~~~~~al~aGk-hVl~  102 (318)
T 3oa2_A           54 TEFEFFLDHASNLKRDSATALDYVSICSPNYLHYPHIAAGLRLGC-DVIC  102 (318)
T ss_dssp             SSHHHHHHHHHHHTTSTTTSCCEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             CCHHHHHHhhhhhhhccCCCCcEEEECCCcHHHHHHHHHHHHCCC-eEEE
Confidence            2333330     0   13679999999999999999999999995 6666

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=98.62  E-value=1.6e-08  Score=91.45  Aligned_cols=90  Identities=20%  Similarity=0.286  Sum_probs=67.5

Q ss_pred             ccEEEEEccC-hhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFG-RIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G-~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ++||||+|+| .+|..+++.|.++|++++++|+++..+ .+.++.                  .-|         ++.+ 
T Consensus         2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~------------------~~g---------~~~~-   53 (387)
T 3moi_A            2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGK------------------EYG---------IPVF-   53 (387)
T ss_dssp             CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHH------------------HHT---------CCEE-
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHH------------------HcC---------CCeE-
Confidence            6999999999 999999999999999999999997422 111110                  001         1222 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .|.+++ ++..++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        54 -~~~~el-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-~Vl~   93 (387)
T 3moi_A           54 -ATLAEM-MQHVQMDAVYIASPHQFHCEHVVQASEQGL-HIIV   93 (387)
T ss_dssp             -SSHHHH-HHHSCCSEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             -CCHHHH-HcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-ceee
Confidence             345554 334579999999999999999999999995 6666

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=98.61  E-value=2.5e-08  Score=86.55  Aligned_cols=94  Identities=22%  Similarity=0.185  Sum_probs=65.7

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccC---hhhhhhheeecccCCcccccceeeeCCceEEECCEEEE
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFIT---TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT   77 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~   77 (265)
                      +|+||+|+|+ |+||+.+++++.++|+++|+++.++...   +....          .+        .|  +  ....++
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~g----------el--------~G--~--~~~gv~   77 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDAS----------IL--------IG--S--DFLGVR   77 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGG----------GG--------TT--C--SCCSCB
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchH----------Hh--------hc--c--CcCCce
Confidence            3689999996 9999999999999999999999987522   11111          00        00  0  000123


Q ss_pred             EEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        78 ~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      ++  .|++++   ..++|+|+++|++..+.+.+..+++.|+. +|+
T Consensus        78 v~--~dl~~l---l~~aDVvIDFT~p~a~~~~~~~~l~~Gv~-vVi  117 (288)
T 3ijp_A           78 IT--DDPESA---FSNTEGILDFSQPQASVLYANYAAQKSLI-HII  117 (288)
T ss_dssp             CB--SCHHHH---TTSCSEEEECSCHHHHHHHHHHHHHHTCE-EEE
T ss_pred             ee--CCHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHcCCC-EEE
Confidence            32  345544   14799999999999999999999999974 444

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=98.61  E-value=1.7e-07  Score=83.04  Aligned_cols=87  Identities=21%  Similarity=0.251  Sum_probs=64.6

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCC--------CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEEC
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG   72 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p--------~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   72 (265)
                      |+++||||+|+|.+|+.+++.|.+++        ++++++|+++...-.         .   .+.       ..      
T Consensus         1 Mk~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~---------~---~~~-------~~------   55 (332)
T 2ejw_A            1 MEALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP---------R---AIP-------QE------   55 (332)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC---------C---SSC-------GG------
T ss_pred             CCeeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh---------h---ccC-------cc------
Confidence            77899999999999999999999987        799999998742110         0   000       00      


Q ss_pred             CEEEEEEecCCCCCCCcccccccEEEEecCCcc-cHHhHHHHHhCCCCeEEE
Q 024565           73 EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFT-DKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        73 g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~-~~~~~~~~~~~G~~~vvi  123 (265)
                          ..+  .|++++ .   ++|+|++|||+.. +.+++.+++++|+ +||+
T Consensus        56 ----~~~--~d~~~l-l---~iDvVve~t~~~~~a~~~~~~AL~aGK-hVVt   96 (332)
T 2ejw_A           56 ----LLR--AEPFDL-L---EADLVVEAMGGVEAPLRLVLPALEAGI-PLIT   96 (332)
T ss_dssp             ----GEE--SSCCCC-T---TCSEEEECCCCSHHHHHHHHHHHHTTC-CEEE
T ss_pred             ----ccc--CCHHHH-h---CCCEEEECCCCcHHHHHHHHHHHHcCC-eEEE
Confidence                022  467777 1   7999999999874 5678889999996 5555

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=98.60  E-value=5.8e-08  Score=89.20  Aligned_cols=91  Identities=16%  Similarity=0.304  Sum_probs=65.1

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcC---------CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQR---------DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF   71 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~---------p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   71 (265)
                      |+++||||+|+|.+|+.+++.|.+|         +++++++|+++....  .....                 .+     
T Consensus         8 Mk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~--~~~~~-----------------~~-----   63 (444)
T 3mtj_A            8 MKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDK--AEALA-----------------GG-----   63 (444)
T ss_dssp             CSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHH--HHHHH-----------------TT-----
T ss_pred             hCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHH--hhhhc-----------------cc-----
Confidence            4568999999999999999988753         789999999974221  11000                 00     


Q ss_pred             CCEEEEEEecCCCCCCCcccccccEEEEecCC-cccHHhHHHHHhCCCCeEEE
Q 024565           72 GEKPVTVFGVRNPEEIPWAETGAEYVVESTGV-FTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        72 ~g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~-~~~~~~~~~~~~~G~~~vvi  123 (265)
                          ...+  .|++++ +.+.++|+|++|||+ ..+.+++..++++|+ +|++
T Consensus        64 ----~~~~--~d~~el-l~d~diDvVve~tp~~~~h~~~~~~AL~aGK-hVvt  108 (444)
T 3mtj_A           64 ----LPLT--TNPFDV-VDDPEIDIVVELIGGLEPARELVMQAIANGK-HVVT  108 (444)
T ss_dssp             ----CCEE--SCTHHH-HTCTTCCEEEECCCSSTTHHHHHHHHHHTTC-EEEE
T ss_pred             ----Cccc--CCHHHH-hcCCCCCEEEEcCCCchHHHHHHHHHHHcCC-EEEE
Confidence                0122  345444 334679999999996 889999999999995 5555

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=98.56  E-value=2.5e-08  Score=90.55  Aligned_cols=95  Identities=19%  Similarity=0.136  Sum_probs=65.8

Q ss_pred             CCccEEEEEccCh---hHHHHHHHHHcCCCeEEEE-EeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEE
Q 024565            1 MGKVKIGINGFGR---IGRLVARVILQRDDVELVA-VNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP   75 (265)
Q Consensus         1 m~~i~vgI~G~G~---~G~~l~~~L~~~p~~el~~-v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~   75 (265)
                      |+++||||||+|.   +|+.+++.+...+++++++ |+|+..+ .+.++..      ++.-                  .
T Consensus        10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~------~g~~------------------~   65 (398)
T 3dty_A           10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQ------LGVD------------------S   65 (398)
T ss_dssp             CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHH------TTCC------------------G
T ss_pred             cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHH------hCCC------------------c
Confidence            5678999999999   9999999999999999998 7887432 1221100      1000                  0


Q ss_pred             EEEEecCCCCCCCccc-----ccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           76 VTVFGVRNPEEIPWAE-----TGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        76 ~~~~~~~~~~~~~~~~-----~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+.+  .|.+++ ++.     .++|+|+.|||+..+.+.+..++++|+ +|++
T Consensus        66 ~~~~--~~~~~l-l~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~  114 (398)
T 3dty_A           66 ERCY--ADYLSM-FEQEARRADGIQAVSIATPNGTHYSITKAALEAGL-HVVC  114 (398)
T ss_dssp             GGBC--SSHHHH-HHHHTTCTTCCSEEEEESCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             ceee--CCHHHH-HhcccccCCCCCEEEECCCcHHHHHHHHHHHHCCC-eEEE
Confidence            0011  233333 111     359999999999999999999999995 6666

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=98.55  E-value=1.9e-08  Score=89.24  Aligned_cols=93  Identities=10%  Similarity=0.085  Sum_probs=65.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc--ChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+||||+|+|.+|..+++.+  +|++++++|+|+..  ..+.++...      ..|         |  +     ..+.+ 
T Consensus         2 ~~rvgiiG~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~------~~~---------~--~-----~~~~~-   56 (337)
T 3ip3_A            2 SLKICVIGSSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAI------SEM---------N--I-----KPKKY-   56 (337)
T ss_dssp             CEEEEEECSSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHH------HTT---------T--C-----CCEEC-
T ss_pred             ceEEEEEccchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHH------HHc---------C--C-----CCccc-
Confidence            69999999988888888887  88999999999753  122222110      001         1  0     01233 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .|.+++ +++.++|+|+.|||+..+.+.+.+++++|+ +|++
T Consensus        57 -~~~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~   96 (337)
T 3ip3_A           57 -NNWWEM-LEKEKPDILVINTVFSLNGKILLEALERKI-HAFV   96 (337)
T ss_dssp             -SSHHHH-HHHHCCSEEEECSSHHHHHHHHHHHHHTTC-EEEE
T ss_pred             -CCHHHH-hcCCCCCEEEEeCCcchHHHHHHHHHHCCC-cEEE
Confidence             355555 344679999999999999999999999995 5666

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=98.54  E-value=8.2e-08  Score=87.77  Aligned_cols=95  Identities=25%  Similarity=0.263  Sum_probs=65.3

Q ss_pred             CCccEEEEEccCh---hHHHHHHHHHcCCCeEEEE-EeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEE
Q 024565            1 MGKVKIGINGFGR---IGRLVARVILQRDDVELVA-VNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP   75 (265)
Q Consensus         1 m~~i~vgI~G~G~---~G~~l~~~L~~~p~~el~~-v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~   75 (265)
                      |+++||||||+|.   +|+.+++.+...+++++++ |+++..+ .+.++..      +            |  +  .  .
T Consensus        35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~------~------------g--~--~--~   90 (417)
T 3v5n_A           35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRE------L------------G--L--D--P   90 (417)
T ss_dssp             CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHH------H------------T--C--C--G
T ss_pred             CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH------c------------C--C--C--c
Confidence            4568999999998   9999999999999999997 8887432 1221100      0            0  0  0  0


Q ss_pred             EEEEecCCCCCCCccc-----ccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           76 VTVFGVRNPEEIPWAE-----TGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        76 ~~~~~~~~~~~~~~~~-----~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+++  .|++++ ++.     .++|+|+.|||+..+.+.+.+++++|+ +|++
T Consensus        91 ~~~~--~~~~~l-l~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~  139 (417)
T 3v5n_A           91 SRVY--SDFKEM-AIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGI-HVIC  139 (417)
T ss_dssp             GGBC--SCHHHH-HHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTC-EEEE
T ss_pred             cccc--CCHHHH-HhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCC-eEEE
Confidence            0111  233443 222     459999999999999999999999995 5666

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=98.54  E-value=2.1e-07  Score=82.22  Aligned_cols=104  Identities=20%  Similarity=0.215  Sum_probs=62.7

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcC------CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQR------DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK   74 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~------p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~   74 (265)
                      |+++||||+|+|.+|+.+++.|.++      ++++|++|+++....... . +  |.  ..+. .. ....+ .+  .. 
T Consensus         2 Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~-~-i--dl--~~~~-~~-~~~~g-~~--~~-   69 (325)
T 3ing_A            2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGR-N-L--DI--SSII-SN-KEKTG-RI--SD-   69 (325)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECS-S-C--CH--HHHH-HH-HHHHS-CS--CS-
T ss_pred             CceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhccc-c-c--CH--HHHH-HH-hhhcC-CC--Cc-
Confidence            7889999999999999999999876      789999999874321000 0 0  00  0000 00 00000 00  00 


Q ss_pred             EEEEEecCCCCCCCcccccccEEEEecCCccc----HHhHHHHHhCCCCeEEE
Q 024565           75 PVTVFGVRNPEEIPWAETGAEYVVESTGVFTD----KDKAAAHLKGGAKKVII  123 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~----~~~~~~~~~~G~~~vvi  123 (265)
                       . .   .+.+++ ..+.++|+|++|||+..+    .+++..++++|+ +||.
T Consensus        70 -~-~---~d~~e~-l~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGk-hVVt  115 (325)
T 3ing_A           70 -R-A---FSGPED-LMGEAADLLVDCTPASRDGVREYSLYRMAFESGM-NVVT  115 (325)
T ss_dssp             -S-B---CCSGGG-GTTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTC-EEEE
T ss_pred             -c-c---CCHHHH-hcCCCCCEEEECCCCccccchHHHHHHHHHHCCC-eEEE
Confidence             0 0   123333 234679999999998644    478999999996 4544

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=98.54  E-value=5.7e-08  Score=86.22  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=63.8

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCC-------CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECC
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRD-------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE   73 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p-------~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g   73 (265)
                      |+++||||+|+|.+|+.+++.|.+++       ++++++|+++......-.  +  +  ...|. ..  ...+      +
T Consensus         4 M~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~--~--~--~~~~~-~~--~~~~------~   68 (331)
T 3c8m_A            4 MKTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNER--I--D--IGKVI-SY--KEKG------S   68 (331)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTT--C--C--HHHHH-HH--HHTT------C
T ss_pred             CcEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcc--c--C--hHHHh-hh--hccC------C
Confidence            44689999999999999999998876       699999998753211000  0  0  00000 00  0000      0


Q ss_pred             EEEE-EEe-cCCCCCCCcccccccEEEEecCCc----ccHHhHHHHHhCCCCeEEE
Q 024565           74 KPVT-VFG-VRNPEEIPWAETGAEYVVESTGVF----TDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        74 ~~~~-~~~-~~~~~~~~~~~~~~DvV~~at~~~----~~~~~~~~~~~~G~~~vvi  123 (265)
                        ++ ++. ..|++++ . +.++|+|++|||+.    .+.+++.+++++|+ +||+
T Consensus        69 --~~~~~~~~~d~~~l-l-~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGk-hVvt  119 (331)
T 3c8m_A           69 --LDSLEYESISASEA-L-ARDFDIVVDATPASADGKKELAFYKETFENGK-DVVT  119 (331)
T ss_dssp             --GGGCCSEECCHHHH-H-HSSCSEEEECSCCCSSSHHHHHHHHHHHHTTC-EEEE
T ss_pred             --cccccCCCCCHHHH-h-CCCCCEEEECCCCCCccchHHHHHHHHHHCCC-eEEe
Confidence              00 000 0134444 2 35799999999996    77889999999996 5554

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=98.53  E-value=6e-08  Score=90.25  Aligned_cols=96  Identities=16%  Similarity=0.178  Sum_probs=69.1

Q ss_pred             CCccEEEEEcc----ChhHHHHHHHHHcC-CCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCE
Q 024565            1 MGKVKIGINGF----GRIGRLVARVILQR-DDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK   74 (265)
Q Consensus         1 m~~i~vgI~G~----G~~G~~l~~~L~~~-p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~   74 (265)
                      |+++||||||+    |.+|+.+++.|.+. |+++|++|+++..+ .+.++.      .+            |  +  .  
T Consensus        37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~------~~------------g--~--~--   92 (479)
T 2nvw_A           37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIE------QL------------Q--L--K--   92 (479)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHH------HT------------T--C--T--
T ss_pred             CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHH------Hc------------C--C--C--
Confidence            44689999999    99999999999998 89999999997532 111110      00            1  0  0  


Q ss_pred             EEEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC-----CeEEE
Q 024565           75 PVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA-----KKVII  123 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~-----~~vvi  123 (265)
                      ....+  .|++++ .++.++|+|+.|||+..+.+.+..++++|.     |+|++
T Consensus        93 ~~~~~--~d~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~  143 (479)
T 2nvw_A           93 HATGF--DSLESF-AQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYV  143 (479)
T ss_dssp             TCEEE--SCHHHH-HHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEE
T ss_pred             cceee--CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEE
Confidence            01122  344444 333579999999999999999999999993     56777

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=98.53  E-value=3.6e-08  Score=90.71  Aligned_cols=95  Identities=18%  Similarity=0.216  Sum_probs=68.4

Q ss_pred             CccEEEEEcc----ChhHHHHHHHHHcC-CCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEE
Q 024565            2 GKVKIGINGF----GRIGRLVARVILQR-DDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP   75 (265)
Q Consensus         2 ~~i~vgI~G~----G~~G~~l~~~L~~~-p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~   75 (265)
                      +++||||||+    |.+|+.+++.|.++ |++++++|+++..+ .+.++      ..+            |  +  .  .
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a------~~~------------g--~--~--~   74 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATI------QRL------------K--L--S--N   74 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHH------HHT------------T--C--T--T
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHH------HHc------------C--C--C--c
Confidence            3589999999    99999999999999 99999999997532 11111      000            1  0  0  0


Q ss_pred             EEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC-----CeEEE
Q 024565           76 VTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA-----KKVII  123 (265)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~-----~~vvi  123 (265)
                      ...+  .|++++ +...++|+|+.|||+..+.+.+..++++|.     |+|++
T Consensus        75 ~~~~--~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~  124 (438)
T 3btv_A           75 ATAF--PTLESF-ASSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFV  124 (438)
T ss_dssp             CEEE--SSHHHH-HHCSSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEE
T ss_pred             ceee--CCHHHH-hcCCCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEe
Confidence            1222  344454 333579999999999999999999999993     46666

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=98.52  E-value=1.1e-07  Score=82.12  Aligned_cols=95  Identities=19%  Similarity=0.224  Sum_probs=66.4

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccCh---hhhhhheeecccCCcccccceeeeCCceEEECCEEE
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITT---DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV   76 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~   76 (265)
                      |++|||+|+|+ |++|+.+++.+.++|+++|++++++..+.   ....          .+.        |  +  ....+
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~----------~~~--------g--~--~~~~v   60 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAG----------ELA--------G--A--GKTGV   60 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTT----------CSS--------S--S--SCCSC
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHH----------HHc--------C--C--CcCCc
Confidence            34689999999 99999999999999999999999864321   1100          000        0  0  00012


Q ss_pred             EEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .++  .|++++ +  .++|+|+++|.+..+.+.+..++++|+. +|+
T Consensus        61 ~~~--~dl~~~-l--~~~DvVIDft~p~~~~~~~~~a~~~G~~-vVi  101 (273)
T 1dih_A           61 TVQ--SSLDAV-K--DDFDVFIDFTRPEGTLNHLAFCRQHGKG-MVI  101 (273)
T ss_dssp             CEE--SCSTTT-T--TSCSEEEECSCHHHHHHHHHHHHHTTCE-EEE
T ss_pred             eec--CCHHHH-h--cCCCEEEEcCChHHHHHHHHHHHhCCCC-EEE
Confidence            232  455554 2  4799999999988899999999999973 555

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=98.46  E-value=2.9e-07  Score=82.86  Aligned_cols=87  Identities=18%  Similarity=0.211  Sum_probs=63.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ++||||+|+| .|+..++++.+.| ++||++|+++..+ .+.++.                  .-|         ++.+ 
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~------------------~~g---------v~~~-   57 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAH------------------AFG---------IPLY-   57 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHH------------------HTT---------CCEE-
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHH------------------HhC---------CCEE-
Confidence            6899999999 5999999998886 5999999998533 222220                  111         2334 


Q ss_pred             cCCCCCCCcccccccEEEEecCCccc----HHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTD----KDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~----~~~~~~~~~~G~~~vvi  123 (265)
                       .|.+++.   .++|+|+.|+|+..+    .+.+.+++++|+ +|++
T Consensus        58 -~~~~~l~---~~~D~v~i~~p~~~h~~~~~~~a~~al~aGk-hVl~   99 (372)
T 4gmf_A           58 -TSPEQIT---GMPDIACIVVRSTVAGGAGTQLARHFLARGV-HVIQ   99 (372)
T ss_dssp             -SSGGGCC---SCCSEEEECCC--CTTSHHHHHHHHHHHTTC-EEEE
T ss_pred             -CCHHHHh---cCCCEEEEECCCcccchhHHHHHHHHHHcCC-cEEE
Confidence             4666662   579999999999887    788999999995 6666

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=98.43  E-value=1.9e-07  Score=82.63  Aligned_cols=97  Identities=20%  Similarity=0.302  Sum_probs=62.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC--------CCeEEEEEeccccCh-hh--hhhheeecccCCcccccceeeeCCceEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQR--------DDVELVAVNDPFITT-DY--MTYMFKYDSVHGQWKHHELKVKDDKTLLF   71 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~--------p~~el~~v~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   71 (265)
                      |+||||+|+|.+|+.+++.|.++        +++++++|+++.... +.  ....+  ..   .+       ..+     
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~--~~---~~-------~~~-----   64 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEAL--RM---KR-------ETG-----   64 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHH--HH---HH-------HHS-----
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHH--hh---hc-------cCc-----
Confidence            59999999999999999999988        899999999874221 10  00000  00   00       000     


Q ss_pred             CCEEEEEEecCCCCCCCcccccccEEEEecCCccc----HHhHHHHHhCCCCeEEE
Q 024565           72 GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTD----KDKAAAHLKGGAKKVII  123 (265)
Q Consensus        72 ~g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~----~~~~~~~~~~G~~~vvi  123 (265)
                           .++...|++++ .+..++|+|++|||+..+    .+++..++++|+ +|++
T Consensus        65 -----~~~~~~d~~~l-l~~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGk-hVv~  113 (327)
T 3do5_A           65 -----MLRDDAKAIEV-VRSADYDVLIEASVTRVDGGEGVNYIREALKRGK-HVVT  113 (327)
T ss_dssp             -----SCSBCCCHHHH-HHHSCCSEEEECCCCC----CHHHHHHHHHTTTC-EEEE
T ss_pred             -----cccCCCCHHHH-hcCCCCCEEEECCCCcccchhHHHHHHHHHHCCC-eEEe
Confidence                 01000133333 233578999999998876    788999999996 4555

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.39  E-value=4.3e-07  Score=79.98  Aligned_cols=89  Identities=19%  Similarity=0.264  Sum_probs=62.5

Q ss_pred             ccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+||||+|+|.+|+. +++.|.++|+++++ |+++..+. +.++.         .+         |  +     . ..+ 
T Consensus         2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~-v~d~~~~~~~~~a~---------~~---------g--~-----~-~~~-   53 (323)
T 1xea_A            2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLAT---------RY---------R--V-----S-ATC-   53 (323)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHH---------HT---------T--C-----C-CCC-
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHH---------Hc---------C--C-----C-ccc-
Confidence            589999999999984 99999988999999 99875321 11110         00         1  0     0 001 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .+..+. + ..++|+|+.|+|+..+.+.+..++++|+ ++++
T Consensus        54 -~~~~~~-l-~~~~D~V~i~tp~~~h~~~~~~al~~Gk-~V~~   92 (323)
T 1xea_A           54 -TDYRDV-L-QYGVDAVMIHAATDVHSTLAAFFLHLGI-PTFV   92 (323)
T ss_dssp             -SSTTGG-G-GGCCSEEEECSCGGGHHHHHHHHHHTTC-CEEE
T ss_pred             -cCHHHH-h-hcCCCEEEEECCchhHHHHHHHHHHCCC-eEEE
Confidence             122222 2 3579999999999999999999999995 4555

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=98.37  E-value=1.9e-07  Score=84.16  Aligned_cols=93  Identities=12%  Similarity=0.150  Sum_probs=64.6

Q ss_pred             CCccEEEEEc-cChhHHH-HH----HHHHcCCCeEEE---------EEeccccC-hhhhhhheeecccCCcccccceeee
Q 024565            1 MGKVKIGING-FGRIGRL-VA----RVILQRDDVELV---------AVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVK   64 (265)
Q Consensus         1 m~~i~vgI~G-~G~~G~~-l~----~~L~~~p~~el~---------~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   64 (265)
                      |+++||||+| +|.+|.. ++    +.+.+.++++++         +|+++..+ .+.++.                  .
T Consensus         4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~------------------~   65 (383)
T 3oqb_A            4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAK------------------R   65 (383)
T ss_dssp             CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHH------------------H
T ss_pred             CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHH------------------H
Confidence            4578999999 6999998 88    888888766654         68887432 122110                  0


Q ss_pred             CCceEEECCEEEEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        65 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      -|  +      ..++  .|++++ .++.++|+|+.|||+..+.+.+..++++|+ +|++
T Consensus        66 ~~--~------~~~~--~~~~~l-l~~~~iD~V~i~tp~~~h~~~~~~al~~Gk-~V~~  112 (383)
T 3oqb_A           66 FN--I------ARWT--TDLDAA-LADKNDTMFFDAATTQARPGLLTQAINAGK-HVYC  112 (383)
T ss_dssp             TT--C------CCEE--SCHHHH-HHCSSCCEEEECSCSSSSHHHHHHHHTTTC-EEEE
T ss_pred             hC--C------Cccc--CCHHHH-hcCCCCCEEEECCCchHHHHHHHHHHHCCC-eEEE
Confidence            01  0      0122  345554 334679999999999999999999999995 5666

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.34  E-value=5.3e-07  Score=75.92  Aligned_cols=79  Identities=28%  Similarity=0.435  Sum_probs=59.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN   83 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   83 (265)
                      |||||+|+|.||+.+++.|. .+++++++++++.....                                +   .+  .+
T Consensus         1 m~vgiIG~G~mG~~~~~~l~-~~g~~lv~v~d~~~~~~--------------------------------~---~~--~~   42 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLE-RNGFEIAAILDVRGEHE--------------------------------K---MV--RG   42 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEEECSSCCCT--------------------------------T---EE--SS
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCCEEEEEEecCcchh--------------------------------h---hc--CC
Confidence            48999999999999999998 57899999988642110                                0   11  23


Q ss_pred             CCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      ++++ .. .++|+||+|+|...+.+.+..++++|+ ++++
T Consensus        43 ~~~l-~~-~~~DvVv~~~~~~~~~~~~~~~l~~G~-~vv~   79 (236)
T 2dc1_A           43 IDEF-LQ-REMDVAVEAASQQAVKDYAEKILKAGI-DLIV   79 (236)
T ss_dssp             HHHH-TT-SCCSEEEECSCHHHHHHHHHHHHHTTC-EEEE
T ss_pred             HHHH-hc-CCCCEEEECCCHHHHHHHHHHHHHCCC-cEEE
Confidence            3333 11 468999999999999999999999996 4444

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=98.34  E-value=1.8e-06  Score=73.26  Aligned_cols=73  Identities=19%  Similarity=0.279  Sum_probs=58.3

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |||+|+|+ |.||+.+++.+.++|+++++++.++..+..                                         
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~-----------------------------------------   39 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLS-----------------------------------------   39 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTH-----------------------------------------
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHH-----------------------------------------
Confidence            58999998 999999999999999999999987631111                                         


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                         ++ . ..++|+|+|+|++....+.++.+++.|+. +|+
T Consensus        40 ---~~-~-~~~~DvvIDfT~p~a~~~~~~~a~~~g~~-~Vi   74 (245)
T 1p9l_A           40 ---LL-T-DGNTEVVIDFTHPDVVMGNLEFLIDNGIH-AVV   74 (245)
T ss_dssp             ---HH-H-HTTCCEEEECSCTTTHHHHHHHHHHTTCE-EEE
T ss_pred             ---HH-h-ccCCcEEEEccChHHHHHHHHHHHHcCCC-EEE
Confidence               00 0 12579999999999999999999999974 444

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.30  E-value=6.6e-07  Score=78.85  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=62.1

Q ss_pred             cEEEEEccChhHHHH-HHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            4 VKIGINGFGRIGRLV-ARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         4 i~vgI~G~G~~G~~l-~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      +||||+|+|.+|+.+ ++.|.+ +++++++|+++..+. +.++      ..+            |  .      ...+  
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~~~~~------~~~------------g--~------~~~~--   51 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYA------TEN------------G--I------GKSV--   51 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHHHHHH------HHT------------T--C------SCCB--
T ss_pred             CeEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHHHHHH------HHc------------C--C------Cccc--
Confidence            589999999999998 888888 889999999975321 1111      000            1  0      0011  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+.+++ ....++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        52 ~~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk-~v~~   91 (332)
T 2glx_A           52 TSVEEL-VGDPDVDAVYVSTTNELHREQTLAAIRAGK-HVLC   91 (332)
T ss_dssp             SCHHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             CCHHHH-hcCCCCCEEEEeCChhHhHHHHHHHHHCCC-eEEE
Confidence            233333 222469999999999999999999999995 5656

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=98.21  E-value=1.9e-06  Score=71.49  Aligned_cols=90  Identities=17%  Similarity=0.091  Sum_probs=63.1

Q ss_pred             ccEEEEEccChhHHHHHHHH-HcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVI-LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L-~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      .+||+|+|+|.+|+.+++.+ .+. +++++++.|..  ....               +         -.+.|  +++...
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~d--p~k~---------------g---------~~i~g--v~V~~~  130 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVD--PEKV---------------G---------RPVRG--GVIEHV  130 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESC--TTTT---------------T---------CEETT--EEEEEG
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCC--HHHH---------------h---------hhhcC--CeeecH
Confidence            47999999999999999963 334 89999999863  2111               0         01122  233322


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+.+++ .+. ++|.|+.|+|+..+.+.+..+.++|++.++.
T Consensus       131 ~dl~el-l~~-~ID~ViIA~Ps~~~~ei~~~l~~aGi~~Iln  170 (211)
T 2dt5_A          131 DLLPQR-VPG-RIEIALLTVPREAAQKAADLLVAAGIKGILN  170 (211)
T ss_dssp             GGHHHH-STT-TCCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             HhHHHH-HHc-CCCEEEEeCCchhHHHHHHHHHHcCCCEEEE
Confidence            344444 234 7999999999999989999999999875554

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=98.16  E-value=9.7e-07  Score=79.04  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=32.0

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCC---CeEEEEEecc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRD---DVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p---~~el~~v~~~   36 (265)
                      +++||||+|+|.+|+.+++.|.+++   ++++++|++.
T Consensus         3 k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~   40 (358)
T 1ebf_A            3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA   40 (358)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred             ceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            4689999999999999999999886   6999999985

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.08  E-value=5.4e-06  Score=61.13  Aligned_cols=98  Identities=14%  Similarity=0.208  Sum_probs=59.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ++||.|+|+|.+|+.+++.|.+++..+++.+. +.  ......+.                ..+  +     ........
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~-r~--~~~~~~~~----------------~~~--~-----~~~~~d~~   58 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVAD-HD--LAALAVLN----------------RMG--V-----ATKQVDAK   58 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEE-SC--HHHHHHHH----------------TTT--C-----EEEECCTT
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEe-CC--HHHHHHHH----------------hCC--C-----cEEEecCC
Confidence            57999999999999999999988657765544 42  21111100                000  0     00010001


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP  126 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~  126 (265)
                      +++++.-...++|+||.|+|...+......+.+.|++.++++.+
T Consensus        59 ~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~  102 (118)
T 3ic5_A           59 DEAGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHYFDLTED  102 (118)
T ss_dssp             CHHHHHHHTTTCSEEEECSCGGGHHHHHHHHHHTTCEEECCCSC
T ss_pred             CHHHHHHHHcCCCEEEECCCchhhHHHHHHHHHhCCCEEEecCc
Confidence            11111000147899999999988888899999999865555543

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=98.04  E-value=6.7e-06  Score=68.36  Aligned_cols=91  Identities=11%  Similarity=0.146  Sum_probs=57.9

Q ss_pred             ccEEEEEccChhHHHHHHH-HHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARV-ILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~-L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      .+||+|+|+|.+|+.+++. ...+++++++++.|..  .....                        -.++|  +++...
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~d--p~k~g------------------------~~i~g--v~V~~~  136 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDIN--ESKIG------------------------TEVGG--VPVYNL  136 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESC--TTTTT------------------------CEETT--EEEEEG
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCC--HHHHH------------------------hHhcC--Ceeech
Confidence            4789999999999999994 4456679999999873  21110                        01122  233322


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEc
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS  124 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis  124 (265)
                      .+.+++ .+ .. |+|+.|+|+..+.+.+..+.++|++.++.-
T Consensus       137 ~dl~el-i~-~~-D~ViIAvPs~~~~ei~~~l~~aGi~~Ilnf  176 (215)
T 2vt3_A          137 DDLEQH-VK-DE-SVAILTVPAVAAQSITDRLVALGIKGILNF  176 (215)
T ss_dssp             GGHHHH-CS-SC-CEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             hhHHHH-HH-hC-CEEEEecCchhHHHHHHHHHHcCCCEEEEc
Confidence            344433 11 23 999999999999999999999998755543

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=98.00  E-value=1.1e-05  Score=68.42  Aligned_cols=80  Identities=23%  Similarity=0.296  Sum_probs=59.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      -|||+|+|+|.||+.+++.   + ++|++++.+ . ...                  .        +   |  +...  .
T Consensus        12 ~~rV~i~G~GaIG~~v~~~---~-~leLv~v~~-~-k~g------------------e--------l---g--v~a~--~   52 (253)
T 1j5p_A           12 HMTVLIIGMGNIGKKLVEL---G-NFEKIYAYD-R-ISK------------------D--------I---P--GVVR--L   52 (253)
T ss_dssp             CCEEEEECCSHHHHHHHHH---S-CCSEEEEEC-S-SCC------------------C--------C---S--SSEE--C
T ss_pred             cceEEEECcCHHHHHHHhc---C-CcEEEEEEe-c-ccc------------------c--------c---C--ceee--C
Confidence            4799999999999999998   5 899999987 2 111                  0        1   1  1122  4


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEc
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS  124 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis  124 (265)
                      |.+++.   .++|+|++|.+.....++.+++|++|+..++.|
T Consensus        53 d~d~ll---a~pD~VVe~A~~~av~e~~~~iL~aG~dvv~~S   91 (253)
T 1j5p_A           53 DEFQVP---SDVSTVVECASPEAVKEYSLQILKNPVNYIIIS   91 (253)
T ss_dssp             SSCCCC---TTCCEEEECSCHHHHHHHHHHHTTSSSEEEECC
T ss_pred             CHHHHh---hCCCEEEECCCHHHHHHHHHHHHHCCCCEEEcC
Confidence            677773   379999999999988888999999998533334

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.90  E-value=2.8e-05  Score=67.47  Aligned_cols=87  Identities=23%  Similarity=0.216  Sum_probs=63.1

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      .+||+|+|+ |.+|+.+++.+.++ ++++++..++......                     ..|         ++++  
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~-g~~~V~~V~p~~~g~~---------------------~~G---------~~vy--   53 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTPGKGGTT---------------------HLG---------LPVF--   53 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------------------ETT---------EEEE--
T ss_pred             CCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCCcccce---------------------eCC---------eecc--
Confidence            589999999 99999999999887 4887777666311110                     011         3444  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+.++++ ...++|+|+.|+|+..+.+.+..++++|++.+|+
T Consensus        54 ~sl~el~-~~~~~D~viI~tP~~~~~~~~~ea~~~Gi~~iVi   94 (288)
T 2nu8_A           54 NTVREAV-AATGATASVIYVPAPFCKDSILEAIDAGIKLIIT   94 (288)
T ss_dssp             SSHHHHH-HHHCCCEEEECCCGGGHHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHh-hcCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence            3444441 1126999999999999999999999999986554

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=97.84  E-value=1.2e-05  Score=66.48  Aligned_cols=96  Identities=16%  Similarity=0.259  Sum_probs=64.0

Q ss_pred             ccEEEEEccChhHHHHHHHHH-cCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~-~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      +.||+|+|+|.+|+.+++.+. ++.+++++++.|..... ..          |.-      .       ++|  ++++..
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~-ki----------G~~------~-------i~G--vpV~~~  137 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSND-LV----------GKT------T-------EDG--IPVYGI  137 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTST-TT----------TCB------C-------TTC--CBEEEG
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchh-cc----------Cce------e-------ECC--eEEeCH
Confidence            579999999999999998753 34679999999863220 11          000      0       011  233322


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcC
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA  125 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~  125 (265)
                      .+.+++ .+..++|.++.|+|.....+.+..+.++|++.++--+
T Consensus       138 ~dL~~~-v~~~~Id~vIIAvPs~~aq~v~d~lv~~GIk~I~nFa  180 (212)
T 3keo_A          138 STINDH-LIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFS  180 (212)
T ss_dssp             GGHHHH-C-CCSCCEEEECSCGGGHHHHHHHHHHHTCCEEEECS
T ss_pred             HHHHHH-HHHcCCCEEEEecCchhHHHHHHHHHHcCCCEEEEcC
Confidence            333332 1235799999999999888899999999998666433

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.81  E-value=2.8e-05  Score=70.63  Aligned_cols=145  Identities=13%  Similarity=0.137  Sum_probs=84.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCe-EEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~-el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+||+|+|+|.+|+.+++.|.+++++ ..+.++++..+ .+.++..+      +..        .+       ..+....
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l------~~~--------~~-------~~~~~~~   59 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSI------KAK--------GY-------GEIDITT   59 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHH------HHT--------TC-------CCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHh------hhh--------cC-------CceEEEE
Confidence            37999999999999999999999876 45566665322 22222100      000        00       0001111


Q ss_pred             cCCC---CCCC--cccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCC-CCCceEEeeec---ccccc-CCCCeEE
Q 024565           81 VRNP---EEIP--WAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVN---EHEYK-PELNIVS  150 (265)
Q Consensus        81 ~~~~---~~~~--~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~-~~~~~~v~~vn---~~~~~-~~~~~Va  150 (265)
                       .|.   +++.  .+..++|+||.|+|...+...++.++++|+..++++... ++...+.|...   .+..+ ....++.
T Consensus        60 -~D~~d~~~l~~~l~~~~~DvVin~ag~~~~~~v~~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~  138 (405)
T 4ina_A           60 -VDADSIEELVALINEVKPQIVLNIALPYQDLTIMEACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALL  138 (405)
T ss_dssp             -CCTTCHHHHHHHHHHHCCSEEEECSCGGGHHHHHHHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEE
T ss_pred             -ecCCCHHHHHHHHHhhCCCEEEECCCcccChHHHHHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEE
Confidence             121   1110  111138999999999888888999999998533343331 11111122210   11111 1456899


Q ss_pred             cCCCchhhhHhHHHHHHHh
Q 024565          151 NASCTTNCLAPLAKVIHDK  169 (265)
Q Consensus       151 ~p~C~~ta~~~~L~pL~~~  169 (265)
                      ++||.+....+...++.++
T Consensus       139 g~G~~PG~~~l~a~~~~~~  157 (405)
T 4ina_A          139 GSGFDPGVTNVFCAYAQKH  157 (405)
T ss_dssp             CCBTTTBHHHHHHHHHHHH
T ss_pred             cCCCCccHHHHHHHHHHHh
Confidence            9999999988888888876

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=97.64  E-value=7e-05  Score=67.35  Aligned_cols=113  Identities=16%  Similarity=0.179  Sum_probs=61.4

Q ss_pred             CC-ccEEEEEcc-ChhHHHHHHHHHcCCC-eEEEEEeccccChhhhhhheeecccCCcccccceeeeCC---ceEE--EC
Q 024565            1 MG-KVKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD---KTLL--FG   72 (265)
Q Consensus         1 m~-~i~vgI~G~-G~~G~~l~~~L~~~p~-~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~--~~   72 (265)
                      |+ |+||+|+|+ |.+|+.+++.+.++|+ ++++++.... +.+.+....+  ...+.+    +...+.   ..+.  +.
T Consensus         1 m~~m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~-ni~~l~~~~~--~f~~~~----v~v~d~~~~~~l~~~l~   73 (388)
T 1r0k_A            1 MSQPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR-NVKDLADAAK--RTNAKR----AVIADPSLYNDLKEALA   73 (388)
T ss_dssp             -CCCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS-CHHHHHHHHH--HTTCSE----EEESCGGGHHHHHHHTT
T ss_pred             CCCceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCC-CHHHHHHHHH--HcCCcE----EEEcChHHHHHHHHHhc
Confidence            54 489999999 9999999999999997 9999994322 2322111110  000000    000000   0000  00


Q ss_pred             CEEEEEE-ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           73 EKPVTVF-GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        73 g~~~~~~-~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +....++ ..++..++ .... +|+|++|++.....+...+++++|+ ++++
T Consensus        74 ~~~~~v~~g~~~~~el-~~~~-iDvVV~ai~G~aGl~ptlaAi~aGK-~Vvl  122 (388)
T 1r0k_A           74 GSSVEAAAGADALVEA-AMMG-ADWTMAAIIGCAGLKATLAAIRKGK-TVAL  122 (388)
T ss_dssp             TCSSEEEESHHHHHHH-HTSC-CSEEEECCCSGGGHHHHHHHHHTTS-EEEE
T ss_pred             cCCcEEEeCccHHHHH-HcCC-CCEEEEeCCCHHHHHHHHHHHHCCC-EEEE
Confidence            0001121 11111122 1124 8999999977778888889999995 5555

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.64  E-value=0.00022  Score=54.85  Aligned_cols=83  Identities=22%  Similarity=0.348  Sum_probs=59.4

Q ss_pred             CccEEEEEcc----ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEE
Q 024565            2 GKVKIGINGF----GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT   77 (265)
Q Consensus         2 ~~i~vgI~G~----G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~   77 (265)
                      +..+|+|+|+    |.+|..+++.|.+.. +++..++ +.  .+.                          +  .|  .+
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G-~~V~~vn-p~--~~~--------------------------i--~G--~~   58 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVN-PN--YDE--------------------------I--EG--LK   58 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEEC-TT--CSE--------------------------E--TT--EE
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCC-CEEEEeC-CC--CCe--------------------------E--CC--ee
Confidence            3579999999    999999999998874 6744433 32  110                          0  12  23


Q ss_pred             EEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        78 ~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      ++  .++++++   ..+|+|+.|+|.....+.++.+.++|++.+++
T Consensus        59 ~~--~s~~el~---~~vDlvii~vp~~~v~~v~~~~~~~g~~~i~~   99 (138)
T 1y81_A           59 CY--RSVRELP---KDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWF   99 (138)
T ss_dssp             CB--SSGGGSC---TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ec--CCHHHhC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEE
Confidence            33  3556663   56999999999988888888899999987766

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.58  E-value=2.5e-05  Score=64.89  Aligned_cols=36  Identities=19%  Similarity=0.215  Sum_probs=30.3

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |+|+||+|+|+|.+|..+++.|.+.. .++..+.++.
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g-~~V~~v~~r~   56 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQ-IPAIIANSRG   56 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTT-CCEEEECTTC
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEECCC
Confidence            55789999999999999999999874 6777767764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.56  E-value=3.8e-05  Score=68.69  Aligned_cols=87  Identities=23%  Similarity=0.267  Sum_probs=54.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      +|||.|+|+|++|+.+++.|.++.++.++.+...  ..+...      .    +         .       ..+.+ ...
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~~~~v~~~~~~~~--~~~~~~------~----~---------~-------~~~~~-d~~   66 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNNE--NLEKVK------E----F---------A-------TPLKV-DAS   66 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHH--HHHHHT------T----T---------S-------EEEEC-CTT
T ss_pred             ccEEEEECCCHHHHHHHHHHhcCCCeEEEEcCHH--HHHHHh------c----c---------C-------CcEEE-ecC
Confidence            5899999999999999999988765543322211  111110      0    0         0       01111 112


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      |.+++.=...++|+|+.|+|...+...++.++++|+
T Consensus        67 d~~~l~~~~~~~DvVi~~~p~~~~~~v~~~~~~~g~  102 (365)
T 3abi_A           67 NFDKLVEVMKEFELVIGALPGFLGFKSIKAAIKSKV  102 (365)
T ss_dssp             CHHHHHHHHTTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHhCCCEEEEecCCcccchHHHHHHhcCc
Confidence            222211001578999999999999999999999998

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.52  E-value=0.00016  Score=62.58  Aligned_cols=87  Identities=17%  Similarity=0.203  Sum_probs=62.3

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      .+||+|+|+ |.+|+.+++.+.++ ++++++...+.....                     .       +.|  ++++  
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~-g~~~v~~VnP~~~g~---------------------~-------i~G--~~vy--   53 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGM---------------------E-------VLG--VPVY--   53 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTC---------------------E-------ETT--EEEE--
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHc-CCeEEEEECCCCCCc---------------------e-------ECC--EEee--
Confidence            579999999 99999999999887 588776555532110                     0       112  3454  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+.++++ ...++|++++++|.....+.++.+.++|++.+|+
T Consensus        54 ~sl~el~-~~~~~Dv~Ii~vp~~~~~~~~~ea~~~Gi~~vVi   94 (288)
T 1oi7_A           54 DTVKEAV-AHHEVDASIIFVPAPAAADAALEAAHAGIPLIVL   94 (288)
T ss_dssp             SSHHHHH-HHSCCSEEEECCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHh-hcCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence            2344441 0116899999999999999999999999986665

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.46  E-value=0.00026  Score=60.87  Aligned_cols=84  Identities=14%  Similarity=0.066  Sum_probs=51.9

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |+++||+|+|+|.+|..+++.|.++. +.++. +.++..+  ....+.                ..|  +     .....
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~-~~d~~~~--~~~~~~----------------~~g--~-----~~~~~   57 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIV-GYNRSDR--SRDIAL----------------ERG--I-----VDEAT   57 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEE-EECSSHH--HHHHHH----------------HTT--S-----CSEEE
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCCCCcEEE-EEcCCHH--HHHHHH----------------HcC--C-----ccccc
Confidence            66789999999999999999998763 46654 4454311  111000                011  0     00111


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK  115 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~  115 (265)
                        .++++.   ..++|+||.|+|.....+.+..+..
T Consensus        58 --~~~~~~---~~~aDvVilavp~~~~~~v~~~l~~   88 (290)
T 3b1f_A           58 --ADFKVF---AALADVIILAVPIKKTIDFIKILAD   88 (290)
T ss_dssp             --SCTTTT---GGGCSEEEECSCHHHHHHHHHHHHT
T ss_pred             --CCHHHh---hcCCCEEEEcCCHHHHHHHHHHHHh
Confidence              344443   2579999999999887777766544

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=97.44  E-value=0.0002  Score=63.61  Aligned_cols=112  Identities=15%  Similarity=0.168  Sum_probs=63.0

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEEC-CEEEEE
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG-EKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~   78 (265)
                      |.+.||+|+|+ |.||...++.+.+|+.+++++++..+ +.+.+....+  ...+++-    ...+....  . .-.-..
T Consensus         1 M~~k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~-n~~~l~~q~~--~f~p~~v----~v~~~~~~--~~~l~~~~   71 (376)
T 3a06_A            1 MEERTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHS-NLELAFKIVK--EFNVKNV----AITGDVEF--EDSSINVW   71 (376)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESS-CHHHHHHHHH--HHTCCEE----EECSSCCC--CCSSSEEE
T ss_pred             CCcceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccC-CHHHHHHHHH--HcCCCEE----EEccHHHH--HHHHHHHc
Confidence            65689999998 99999999999999789999996532 3433322110  0001110    00000000  0 000000


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .......++ ....++|+|+.|++.....+-.-.++++|+ ++.+
T Consensus        72 ~G~~~l~el-~~~~~~D~Vv~AivG~aGL~ptlaAi~aGK-~vaL  114 (376)
T 3a06_A           72 KGSHSIEEM-LEALKPDITMVAVSGFSGLRAVLASLEHSK-RVCL  114 (376)
T ss_dssp             ESTTHHHHH-HHHHCCSEEEECCCSTTHHHHHHHHHHHCS-EEEE
T ss_pred             cCHHHHHHH-hcCCCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEE
Confidence            000000111 011468999999999999999999999995 4545

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=97.43  E-value=0.00038  Score=53.13  Aligned_cols=92  Identities=16%  Similarity=0.126  Sum_probs=59.9

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      ++.|+.|+|+|..|+.+++.+.++++++++++.+......                 +.         .+.|  ++++..
T Consensus         3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~-----------------g~---------~i~g--~pV~g~   54 (141)
T 3nkl_A            3 AKKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKH-----------------KT---------TMQG--ITIYRP   54 (141)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGT-----------------TC---------EETT--EEEECG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccC-----------------CC---------EecC--eEEECH
Confidence            4578999999999999999999888999999998631110                 00         0122  334321


Q ss_pred             CCCCCCCcccccccEEEEecCCccc---HHhHHHHHhCCCCeEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTD---KDKAAAHLKGGAKKVI  122 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~---~~~~~~~~~~G~~~vv  122 (265)
                      .+..++ ....++|.|+.|.|....   .+.+..+.+.|++..+
T Consensus        55 ~~l~~~-~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~   97 (141)
T 3nkl_A           55 KYLERL-IKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLT   97 (141)
T ss_dssp             GGHHHH-HHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEE
T ss_pred             HHHHHH-HHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            122111 112468999999986544   4566778889985333

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=97.42  E-value=0.00037  Score=54.02  Aligned_cols=84  Identities=18%  Similarity=0.201  Sum_probs=59.4

Q ss_pred             ccEEEEEcc----ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF----GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~----G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      +.+|+|+|+    |.+|..+++.|.+.. +++..+ ++...+.                          .+  .|  .++
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G-~~v~~v-np~~~g~--------------------------~i--~G--~~~   60 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQG-YHVIPV-SPKVAGK--------------------------TL--LG--QQG   60 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHT-CCEEEE-CSSSTTS--------------------------EE--TT--EEC
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCC-CEEEEe-CCccccc--------------------------cc--CC--eec
Confidence            468999999    789999999998775 664333 3321111                          00  12  233


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .++++++   ..+|+|+.|+|.....+.+..+.++|++.+++
T Consensus        61 ~--~sl~el~---~~~Dlvii~vp~~~v~~v~~~~~~~g~~~i~i  100 (145)
T 2duw_A           61 Y--ATLADVP---EKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWL  100 (145)
T ss_dssp             C--SSTTTCS---SCCSEEECCSCSTHHHHHHHHHHHHTCCEEEC
T ss_pred             c--CCHHHcC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEE
Confidence            3  3566773   57999999999988888888888999887776

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.39  E-value=0.00021  Score=60.62  Aligned_cols=86  Identities=13%  Similarity=0.140  Sum_probs=55.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      ++||+|+|+|.+|..+++.|.+.. ++++.+.++..+ .+.+.      .            .-|         +...  
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g-~~~v~~~~~~~~~~~~~~------~------------~~g---------~~~~--   59 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKG-FRIVQVYSRTEESARELA------Q------------KVE---------AEYT--   59 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHT-CCEEEEECSSHHHHHHHH------H------------HTT---------CEEE--
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCC-CeEEEEEeCCHHHHHHHH------H------------HcC---------Ccee--
Confidence            479999999999999999998764 676777776422 11111      0            001         1122  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHh---CCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK---GGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~---~G~~~vvi  123 (265)
                      .++++.   ..++|+||.|+|.....+..+.+.+   .|.  +++
T Consensus        60 ~~~~~~---~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~--ivv   99 (266)
T 3d1l_A           60 TDLAEV---NPYAKLYIVSLKDSAFAELLQGIVEGKREEA--LMV   99 (266)
T ss_dssp             SCGGGS---CSCCSEEEECCCHHHHHHHHHHHHTTCCTTC--EEE
T ss_pred             CCHHHH---hcCCCEEEEecCHHHHHHHHHHHHhhcCCCc--EEE
Confidence            234333   1579999999999877666666554   454  555

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.35  E-value=0.00058  Score=52.85  Aligned_cols=82  Identities=22%  Similarity=0.218  Sum_probs=59.5

Q ss_pred             ccEEEEEcc----ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF----GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~----G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      +.+|+|+|+    |.+|..+++.|.++. +++..|+ +.  ..         +                   +.|  +++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G-~~v~~Vn-p~--~~---------~-------------------i~G--~~~   67 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVN-PK--YE---------E-------------------VLG--RKC   67 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEEC-TT--CS---------E-------------------ETT--EEC
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCC-CEEEEEC-CC--CC---------e-------------------ECC--eec
Confidence            478999999    699999999998875 6754443 21  11         0                   012  233


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .++++++   ..+|+|+.|+|.....+.++.+.++|++.+++
T Consensus        68 y--~sl~~l~---~~vDlvvi~vp~~~~~~vv~~~~~~gi~~i~~  107 (144)
T 2d59_A           68 Y--PSVLDIP---DKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWF  107 (144)
T ss_dssp             B--SSGGGCS---SCCSEEEECSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             c--CCHHHcC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEE
Confidence            3  3456663   46999999999999999999999999987766

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=97.30  E-value=0.00045  Score=59.98  Aligned_cols=87  Identities=22%  Similarity=0.256  Sum_probs=61.3

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      +.+++|+|+ |.+|+.+++.+.++ ++++++-.++....+                          .  +.|  ++++  
T Consensus        13 ~~~v~V~Gasg~~G~~~~~~l~~~-g~~~V~~VnP~~~g~--------------------------~--i~G--~~vy--   59 (294)
T 2yv1_A           13 NTKAIVQGITGRQGSFHTKKMLEC-GTKIVGGVTPGKGGQ--------------------------N--VHG--VPVF--   59 (294)
T ss_dssp             TCCEEEETTTSHHHHHHHHHHHHT-TCCEEEEECTTCTTC--------------------------E--ETT--EEEE--
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhC-CCeEEEEeCCCCCCc--------------------------e--ECC--Eeee--
Confidence            468999999 99999999999987 577665554431111                          0  012  3454  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+.++++ ...++|++++|+|+..+.+.++.+.++|++.+|+
T Consensus        60 ~sl~el~-~~~~~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi  100 (294)
T 2yv1_A           60 DTVKEAV-KETDANASVIFVPAPFAKDAVFEAIDAGIELIVV  100 (294)
T ss_dssp             SSHHHHH-HHHCCCEEEECCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHh-hcCCCCEEEEccCHHHHHHHHHHHHHCCCCEEEE
Confidence            3444442 0016899999999999999999999999985555

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.21  E-value=5.5e-05  Score=64.94  Aligned_cols=84  Identities=15%  Similarity=0.050  Sum_probs=45.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||||+|+|.+|..+++.|.++  ++++.+.+++.+ .+.+.      .            .-+         . ..  
T Consensus         2 ~m~I~iIG~G~mG~~la~~l~~~--~~v~~v~~~~~~~~~~~~------~------------~~g---------~-~~--   49 (276)
T 2i76_A            2 SLVLNFVGTGTLTRFFLECLKDR--YEIGYILSRSIDRARNLA------E------------VYG---------G-KA--   49 (276)
T ss_dssp             --CCEEESCCHHHHHHHHTTC------CCCEECSSHHHHHHHH------H------------HTC---------C-CC--
T ss_pred             CceEEEEeCCHHHHHHHHHHHHc--CcEEEEEeCCHHHHHHHH------H------------HcC---------C-cc--
Confidence            57999999999999999998876  676567766422 11111      0            001         0 11  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+++++   ..++|+||.|+|.....+.+..+...|.  +|+
T Consensus        50 ~~~~~~---~~~~DvVilav~~~~~~~v~~~l~~~~~--ivi   86 (276)
T 2i76_A           50 ATLEKH---PELNGVVFVIVPDRYIKTVANHLNLGDA--VLV   86 (276)
T ss_dssp             CSSCCC---CC---CEEECSCTTTHHHHHTTTCCSSC--CEE
T ss_pred             CCHHHH---HhcCCEEEEeCChHHHHHHHHHhccCCC--EEE
Confidence            244443   1468999999999887666654433343  444

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=97.20  E-value=0.00091  Score=58.13  Aligned_cols=87  Identities=20%  Similarity=0.248  Sum_probs=61.0

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      +.|+.|+|+ |.+|+.+++.+.++ ++++++..++....+                          .  +.|  ++++  
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~-g~~~v~~VnP~~~g~--------------------------~--i~G--~~vy--   59 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEY-GTKVVAGVTPGKGGS--------------------------E--VHG--VPVY--   59 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTC--------------------------E--ETT--EEEE--
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhC-CCcEEEEeCCCCCCc--------------------------e--ECC--Eeee--
Confidence            578999999 99999999999887 577665554431111                          0  012  3454  


Q ss_pred             CCCCCCCccccc-ccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETG-AEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~-~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .+.++++ .... +|++++++|...+.+.++.+.++|++.+|+
T Consensus        60 ~sl~el~-~~~~~~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi  101 (297)
T 2yv2_A           60 DSVKEAL-AEHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVV  101 (297)
T ss_dssp             SSHHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHh-hcCCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence            3444442 0013 899999999999999999999999985655

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.14  E-value=0.00055  Score=58.87  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=27.8

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCC-eEEEEEeccc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDD-VELVAVNDPF   37 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~-~el~~v~~~~   37 (265)
                      |+++||+|+|+|.+|..+++.|.++.. .+-+.+++++
T Consensus         1 M~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~   38 (280)
T 3tri_A            1 MNTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRS   38 (280)
T ss_dssp             -CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSS
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCC
Confidence            778999999999999999999987741 2224456654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.10  E-value=0.0042  Score=52.66  Aligned_cols=34  Identities=12%  Similarity=0.190  Sum_probs=28.5

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ||+||.|.|+|++|+.+++.|.++. .++.++...
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g-~~V~~~~r~   37 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQG-WRIIGTSRN   37 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGT-CEEEEEESC
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCC-CEEEEEEcC
Confidence            3589999999999999999999884 788877654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.02  E-value=0.0015  Score=57.12  Aligned_cols=89  Identities=13%  Similarity=0.041  Sum_probs=53.4

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCe-EEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~-el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      +++||+|+|+|.||..+++.|.+.... +|. ++++..+  ......                +.|  +     ..... 
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~-~~dr~~~--~~~~a~----------------~~G--~-----~~~~~-   84 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIY-GYDINPE--SISKAV----------------DLG--I-----IDEGT-   84 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHHTTCCSEEE-EECSCHH--HHHHHH----------------HTT--S-----CSEEE-
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEE-EEECCHH--HHHHHH----------------HCC--C-----cchhc-
Confidence            347999999999999999999887522 544 4555322  111110                111  0     00111 


Q ss_pred             cCCCCC-CCcccccccEEEEecCCcccHHhHHHHH---hCCCCeEEE
Q 024565           81 VRNPEE-IPWAETGAEYVVESTGVFTDKDKAAAHL---KGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~-~~~~~~~~DvV~~at~~~~~~~~~~~~~---~~G~~~vvi  123 (265)
                       .++++ .   ..++|+||.|+|.....+..+.+.   +.|+  +|+
T Consensus        85 -~~~~~~~---~~~aDvVilavp~~~~~~vl~~l~~~l~~~~--iv~  125 (314)
T 3ggo_A           85 -TSIAKVE---DFSPDFVMLSSPVRTFREIAKKLSYILSEDA--TVT  125 (314)
T ss_dssp             -SCTTGGG---GGCCSEEEECSCGGGHHHHHHHHHHHSCTTC--EEE
T ss_pred             -CCHHHHh---hccCCEEEEeCCHHHHHHHHHHHhhccCCCc--EEE
Confidence             34554 2   267999999999987766655443   4555  555

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=96.99  E-value=0.0016  Score=50.13  Aligned_cols=84  Identities=13%  Similarity=0.077  Sum_probs=59.5

Q ss_pred             ccEEEEEcc----ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF----GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~----G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      +.+|+|+|+    |.+|..+++.|.++. +++..|+ +....+                          .  +.|  +++
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G-~~v~~vn-p~~~~~--------------------------~--i~G--~~~   60 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLPVN-PRFQGE--------------------------E--LFG--EEA   60 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEEEC-GGGTTS--------------------------E--ETT--EEC
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCC-CEEEEeC-CCcccC--------------------------c--CCC--EEe
Confidence            468999999    799999999998875 6644333 210010                          0  112  234


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .+.++++   ..+|+++.|+|.....+.++++.+.|++.+++
T Consensus        61 ~--~sl~el~---~~vDlavi~vp~~~~~~v~~~~~~~gi~~i~~  100 (140)
T 1iuk_A           61 V--ASLLDLK---EPVDILDVFRPPSALMDHLPEVLALRPGLVWL  100 (140)
T ss_dssp             B--SSGGGCC---SCCSEEEECSCHHHHTTTHHHHHHHCCSCEEE
T ss_pred             c--CCHHHCC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEE
Confidence            3  3456663   56999999999988888999999999987776

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.98  E-value=0.0021  Score=48.31  Aligned_cols=82  Identities=18%  Similarity=0.080  Sum_probs=60.9

Q ss_pred             ccEEEEEcc----ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF----GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~----G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      +.+|+|+|+    +..|..+++.|.++. +++..|+-.. +           +                   +.|  .+.
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~g-~~V~pVnP~~-~-----------~-------------------i~G--~~~   49 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSHG-HEFIPVGRKK-G-----------E-------------------VLG--KTI   49 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHT-CCEEEESSSC-S-----------E-------------------ETT--EEC
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHCC-CeEEEECCCC-C-----------c-------------------CCC--eec
Confidence            468999999    568999999999875 5776665321 0           0                   112  233


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEc
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS  124 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis  124 (265)
                      +  .+.++++   . +|+|+.++|.....+.++++.+.|+|.++++
T Consensus        50 y--~sl~dlp---~-vDlavi~~p~~~v~~~v~e~~~~g~k~v~~~   89 (122)
T 3ff4_A           50 I--NERPVIE---G-VDTVTLYINPQNQLSEYNYILSLKPKRVIFN   89 (122)
T ss_dssp             B--CSCCCCT---T-CCEEEECSCHHHHGGGHHHHHHHCCSEEEEC
T ss_pred             c--CChHHCC---C-CCEEEEEeCHHHHHHHHHHHHhcCCCEEEEC
Confidence            3  4567774   5 9999999999999999999999999976663

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.98  E-value=0.0015  Score=54.20  Aligned_cols=35  Identities=17%  Similarity=0.199  Sum_probs=29.0

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |+|++|-|.|+ |.+|+.+++.|.+....+++.+..
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R   56 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFAR   56 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEES
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEc
Confidence            55789999999 999999999999886577776654

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.92  E-value=0.0028  Score=58.63  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=28.3

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCe-EEEEEe
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDV-ELVAVN   34 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~-el~~v~   34 (265)
                      +++||+|+|+|++|..++..|++.|+. +|+.+.
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D   50 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQ   50 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEE
Confidence            468999999999999999999988657 777654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.91  E-value=0.00061  Score=60.10  Aligned_cols=34  Identities=15%  Similarity=0.214  Sum_probs=26.0

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+++||+|+|+|.+|..++..|.+.. .++. +.++
T Consensus         2 m~~mki~iiG~G~~G~~~a~~L~~~g-~~V~-~~~r   35 (359)
T 1bg6_A            2 IESKTYAVLGLGNGGHAFAAYLALKG-QSVL-AWDI   35 (359)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CCcCeEEEECCCHHHHHHHHHHHhCC-CEEE-EEeC
Confidence            44579999999999999999998764 6654 4444

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=96.87  E-value=0.0016  Score=54.11  Aligned_cols=69  Identities=25%  Similarity=0.336  Sum_probs=53.3

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      +|-+|+|+ |+||+.+.++. +.++++|++..++.  .                                  .       
T Consensus        13 ~~~~v~Ga~GrMG~~i~~~~-~~~~~elv~~id~~--~----------------------------------~-------   48 (228)
T 1vm6_A           13 MKYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDVN--G----------------------------------V-------   48 (228)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEETT--E----------------------------------E-------
T ss_pred             ceeEEEEecCHHHHHHHHHH-hCCCCEEEEEEcCC--C----------------------------------c-------
Confidence            78999999 99999998865 66789998876641  0                                  0       


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        +++    .++|+|+|-|-+....+.++.+++.|++ +|+
T Consensus        49 --~~l----~~~DVvIDFT~P~a~~~~~~~~~~~g~~-~Vi   82 (228)
T 1vm6_A           49 --EEL----DSPDVVIDFSSPEALPKTVDLCKKYRAG-LVL   82 (228)
T ss_dssp             --EEC----SCCSEEEECSCGGGHHHHHHHHHHHTCE-EEE
T ss_pred             --ccc----cCCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence              011    2479999888888999999999999985 444

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.86  E-value=0.0016  Score=55.41  Aligned_cols=35  Identities=29%  Similarity=0.387  Sum_probs=29.2

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+|+||-|.|+|++|+.+++.|.+.. .+|+++...
T Consensus         1 M~~~~ilVtGaG~iG~~l~~~L~~~g-~~V~~~~r~   35 (286)
T 3gpi_A            1 MSLSKILIAGCGDLGLELARRLTAQG-HEVTGLRRS   35 (286)
T ss_dssp             -CCCCEEEECCSHHHHHHHHHHHHTT-CCEEEEECT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence            77889999999999999999999874 677777643

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.85  E-value=0.0039  Score=54.21  Aligned_cols=30  Identities=33%  Similarity=0.422  Sum_probs=24.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      +|||+|+|+|.+|..+...|. . +.++..+.
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~-g~~V~~~~   31 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-L-YHDVTVVT   31 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-T-TSEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHh-c-CCceEEEE
Confidence            489999999999999999998 4 46666554

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.83  E-value=0.0023  Score=55.06  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=24.6

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |+|+||+|+|+|.+|..++..|.+.. .++..+
T Consensus         1 ~~~m~i~iiG~G~~G~~~a~~l~~~g-~~V~~~   32 (316)
T 2ew2_A            1 SNAMKIAIAGAGAMGSRLGIMLHQGG-NDVTLI   32 (316)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCC-CcEEEE
Confidence            45689999999999999999998774 565544

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.77  E-value=0.002  Score=55.74  Aligned_cols=32  Identities=28%  Similarity=0.394  Sum_probs=26.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||+|+|+|++|..+++.|.+.. .++. +.++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G-~~V~-~~dr   38 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAG-LSTW-GADL   38 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CeEE-EEEC
Confidence            579999999999999999999874 5654 4455

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.75  E-value=0.0026  Score=54.14  Aligned_cols=94  Identities=15%  Similarity=0.130  Sum_probs=55.4

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |||-|.|+ |.+|+.+++.|.+.++.++.++.........+             .      ..+  +     .+....-.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-------------~------~~~--v-----~~~~~D~~   54 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-------------W------RGK--V-----SVRQLDYF   54 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-------------G------BTT--B-----EEEECCTT
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-------------h------hCC--C-----EEEEcCCC
Confidence            47999999 99999999999887667887776542111110             0      001  1     01010101


Q ss_pred             CCCCCCcccccccEEEEecCCc--------ccHHhHHHHHhCCCCeEEE
Q 024565           83 NPEEIPWAETGAEYVVESTGVF--------TDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~--------~~~~~~~~~~~~G~~~vvi  123 (265)
                      |++.+.-...++|+||.|++..        .+...++.+.++|++++|.
T Consensus        55 d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~  103 (289)
T 3e48_A           55 NQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIF  103 (289)
T ss_dssp             CHHHHHHHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CHHHHHHHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEE
Confidence            2222111125789999998753        2345567777889877664

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.72  E-value=0.0023  Score=52.35  Aligned_cols=35  Identities=31%  Similarity=0.339  Sum_probs=27.9

Q ss_pred             CC-ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            1 MG-KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         1 m~-~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+ |+||.|.|+ |.+|+.+++.|.++. .++.++...
T Consensus         1 M~~m~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~   37 (227)
T 3dhn_A            1 MEKVKKIVLIGASGFVGSALLNEALNRG-FEVTAVVRH   37 (227)
T ss_dssp             --CCCEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSC
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcC
Confidence            54 579999999 999999999999885 677766543

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.72  E-value=0.00026  Score=59.86  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=27.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |+||+|+|+|.+|+.+++.|.+.. .+ +.++++.
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g-~~-v~~~~~~   35 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTP-HE-LIISGSS   35 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSS-CE-EEEECSS
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCC-Ce-EEEECCC
Confidence            579999999999999999998775 34 4666663

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.70  E-value=0.00099  Score=59.44  Aligned_cols=34  Identities=32%  Similarity=0.465  Sum_probs=27.0

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .++||||||+|.+|..+++.|.++. .+|. ++++.
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G-~~V~-v~dr~   54 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGG-HECV-VYDLN   54 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT-CEEE-EECSC
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCC-CEEE-EEeCC
Confidence            3589999999999999999999885 5654 44553

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.68  E-value=0.0012  Score=57.84  Aligned_cols=36  Identities=14%  Similarity=0.275  Sum_probs=26.0

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCC---eEEEEEeccc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDD---VELVAVNDPF   37 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~---~el~~v~~~~   37 (265)
                      |++|||+|||+|.+|..+++.|.+...   .++. +.++.
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~-v~~r~   58 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIM-ASSPD   58 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEE-EECSC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEE-EECCC
Confidence            446799999999999999999987641   3443 44553

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.67  E-value=0.0013  Score=57.31  Aligned_cols=34  Identities=18%  Similarity=0.399  Sum_probs=27.3

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .|+||||+|+|.+|..+++.|.+.. .++. +.++.
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G-~~V~-~~dr~   53 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNG-FKVT-VWNRT   53 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTT-CEEE-EECSS
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCC-CeEE-EEeCC
Confidence            4689999999999999999999875 5655 44553

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.64  E-value=0.001  Score=57.21  Aligned_cols=32  Identities=28%  Similarity=0.598  Sum_probs=25.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||+|+|+|.+|..+++.|.++. .++ .+.++
T Consensus         5 ~m~i~iiG~G~~G~~~a~~l~~~g-~~V-~~~~~   36 (299)
T 1vpd_A            5 TMKVGFIGLGIMGKPMSKNLLKAG-YSL-VVSDR   36 (299)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTT-CEE-EEECS
T ss_pred             cceEEEECchHHHHHHHHHHHhCC-CEE-EEEeC
Confidence            379999999999999999998874 665 45555

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.61  E-value=0.0015  Score=56.96  Aligned_cols=82  Identities=15%  Similarity=0.113  Sum_probs=48.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |+||||+|+|.+|..+++.|.+.. .+-+.+.++..+......+.                ..|         +...  .
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G-~~~V~~~dr~~~~~~~~~~~----------------~~g---------~~~~--~   75 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAG-AIDMAAYDAASAESWRPRAE----------------ELG---------VSCK--A   75 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHS-CCEEEEECSSCHHHHHHHHH----------------HTT---------CEEC--S
T ss_pred             CCEEEEECccHHHHHHHHHHHHCC-CCeEEEEcCCCCHHHHHHHH----------------HCC---------CEEe--C
Confidence            579999999999999999999874 42344555531011111000                111         1111  2


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK  115 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~  115 (265)
                      ++++.   ..++|+||.|+|.....+.+....+
T Consensus        76 ~~~e~---~~~aDvVi~~vp~~~~~~~~~~l~~  105 (312)
T 3qsg_A           76 SVAEV---AGECDVIFSLVTAQAALEVAQQAGP  105 (312)
T ss_dssp             CHHHH---HHHCSEEEECSCTTTHHHHHHHHGG
T ss_pred             CHHHH---HhcCCEEEEecCchhHHHHHHhhHh
Confidence            33332   1568999999999887776655543

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.56  E-value=0.0033  Score=53.84  Aligned_cols=84  Identities=14%  Similarity=0.115  Sum_probs=51.7

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||+|+|+ |.+|..+++.|.+.. .++. +.++..+  ....+.                +.|  +       ..   
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g-~~V~-~~~r~~~--~~~~~~----------------~~g--~-------~~---   58 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSA-HHLA-AIEIAPE--GRDRLQ----------------GMG--I-------PL---   58 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSS-SEEE-EECCSHH--HHHHHH----------------HTT--C-------CC---
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC-CEEE-EEECCHH--HHHHHH----------------hcC--C-------Cc---
Confidence            479999999 999999999998875 5765 5555322  111110                001  0       01   


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHh---CCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK---GGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~---~G~~~vvi  123 (265)
                      .++.+.   ..++|+||.|+|.....+..+.+..   .|.  +++
T Consensus        59 ~~~~~~---~~~aDvVi~av~~~~~~~v~~~l~~~l~~~~--ivv   98 (286)
T 3c24_A           59 TDGDGW---IDEADVVVLALPDNIIEKVAEDIVPRVRPGT--IVL   98 (286)
T ss_dssp             CCSSGG---GGTCSEEEECSCHHHHHHHHHHHGGGSCTTC--EEE
T ss_pred             CCHHHH---hcCCCEEEEcCCchHHHHHHHHHHHhCCCCC--EEE
Confidence            122222   2579999999998877666665543   354  555

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.55  E-value=0.00076  Score=59.40  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=26.2

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |+++||+|+|+|.+|..++..|.+.. .++..+.
T Consensus         1 M~~mkI~IiGaG~~G~~~a~~L~~~g-~~V~~~~   33 (335)
T 3ghy_A            1 MSLTRICIVGAGAVGGYLGARLALAG-EAINVLA   33 (335)
T ss_dssp             -CCCCEEEESCCHHHHHHHHHHHHTT-CCEEEEC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCC-CEEEEEE
Confidence            77789999999999999999998764 4554443

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.52  E-value=0.002  Score=56.34  Aligned_cols=32  Identities=28%  Similarity=0.302  Sum_probs=26.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||||+|+|++|..+++.|.+.. .++. +.++
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G-~~V~-~~dr   62 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAG-YALQ-VWNR   62 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CCEEEEECccHHHHHHHHHHHhCC-CeEE-EEcC
Confidence            479999999999999999999874 6654 4455

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=96.51  E-value=0.0013  Score=55.36  Aligned_cols=26  Identities=31%  Similarity=0.639  Sum_probs=23.1

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCC
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRD   26 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p   26 (265)
                      |+++||+|+|+|.+|..+++.|.+..
T Consensus         2 m~~m~i~iiG~G~mG~~~a~~l~~~g   27 (262)
T 2rcy_A            2 MENIKLGFMGLGQMGSALAHGIANAN   27 (262)
T ss_dssp             CSSSCEEEECCSHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCC
Confidence            67789999999999999999998654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.51  E-value=0.0024  Score=54.81  Aligned_cols=32  Identities=19%  Similarity=0.398  Sum_probs=26.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +||+|+|+|.+|..+++.|.++. .++. +.+++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G-~~V~-~~dr~   33 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAG-CSVT-IWNRS   33 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEE-EECSS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCC-CeEE-EEcCC
Confidence            68999999999999999999875 6665 45553

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=96.48  E-value=0.0071  Score=52.37  Aligned_cols=34  Identities=35%  Similarity=0.447  Sum_probs=29.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |||+|+|+|.+|..++.+|..++.+.-+.+.|..
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~   34 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            6899999999999999999888777666777764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.45  E-value=0.0038  Score=49.90  Aligned_cols=34  Identities=26%  Similarity=0.281  Sum_probs=29.0

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |+.+||.|.|+ |.+|+.+++.|.++. .++..+..
T Consensus         1 M~~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r   35 (206)
T 1hdo_A            1 MAVKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVR   35 (206)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEe
Confidence            66689999999 999999999999875 67777654

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.40  E-value=0.0012  Score=55.53  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=26.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCe--EEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDV--ELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~--el~~v~~~~   37 (265)
                      ++||+|+|+|.+|..+++.|.+...+  +-+.+++++
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~   38 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLN   38 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Confidence            47999999999999999999877421  223455653

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.40  E-value=0.0047  Score=56.37  Aligned_cols=31  Identities=35%  Similarity=0.454  Sum_probs=25.8

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .++||+|+|+|++|..++..|.+  +.+|+++.
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~--G~~V~~~D   65 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ--NHEVVALD   65 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT--TSEEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc--CCeEEEEe
Confidence            36899999999999999998886  57776553

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.40  E-value=0.011  Score=47.97  Aligned_cols=32  Identities=28%  Similarity=0.402  Sum_probs=27.1

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||.|.|+ |.+|+.+++.|.++. .++.++...
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g-~~V~~~~R~   33 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTD-YQIYAGARK   33 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSS-CEEEEEESS
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCC-CEEEEEECC
Confidence            38999999 999999999999874 787777643

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.37  E-value=0.0083  Score=52.37  Aligned_cols=83  Identities=16%  Similarity=0.029  Sum_probs=49.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      ++||||+|+|++|..+++.|.+....++. +.++..+ .+......  +.    +      ...|       .   .   
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~-~~dr~~~~~~~~~~~~--~~----~------~~~g-------~---~---   77 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLA-AYDLRFNDPAASGALR--AR----A------AELG-------V---E---   77 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEE-EECGGGGCTTTHHHHH--HH----H------HHTT-------C---E---
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEE-EEeCCCccccchHHHH--HH----H------HHCC-------C---C---
Confidence            57999999999999999999987425554 4454321 00000000  00    0      0112       1   1   


Q ss_pred             C-CCCCCCcccccccEEEEecCCcccHHhHHHHH
Q 024565           82 R-NPEEIPWAETGAEYVVESTGVFTDKDKAAAHL  114 (265)
Q Consensus        82 ~-~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~  114 (265)
                      . ++++.   ..++|+||.|+|.....+.+....
T Consensus        78 ~~s~~e~---~~~aDvVi~avp~~~~~~~~~~i~  108 (317)
T 4ezb_A           78 PLDDVAG---IACADVVLSLVVGAATKAVAASAA  108 (317)
T ss_dssp             EESSGGG---GGGCSEEEECCCGGGHHHHHHHHG
T ss_pred             CCCHHHH---HhcCCEEEEecCCHHHHHHHHHHH
Confidence            2 34433   257899999999987777665544

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.36  E-value=0.0022  Score=55.16  Aligned_cols=32  Identities=31%  Similarity=0.531  Sum_probs=26.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||+|+|+|.+|..+++.|.+.. .++. +.++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g-~~V~-~~~~   35 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEG-VTVY-AFDL   35 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCC-CeEE-EEeC
Confidence            579999999999999999998764 6754 5555

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.32  E-value=0.0089  Score=51.72  Aligned_cols=31  Identities=35%  Similarity=0.583  Sum_probs=24.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .|||+||.|+||..+++.|.++. ++|. +.++
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G-~~V~-v~dr   36 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAG-YELV-VWNR   36 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT-CEEE-EC--
T ss_pred             CcEEEEecHHHHHHHHHHHHHCC-CeEE-EEeC
Confidence            58999999999999999999884 6654 4554

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.32  E-value=0.0039  Score=53.81  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||+|+|+|++|..+++.|.++. .++.. .++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G-~~V~~-~dr   46 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWP-GGVTV-YDI   46 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTST-TCEEE-ECS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCC-CeEEE-EeC
Confidence            469999999999999999999874 56544 454

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=96.31  E-value=0.0015  Score=56.06  Aligned_cols=31  Identities=26%  Similarity=0.420  Sum_probs=25.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |+||+|+|+|.+|..+++.|.+.. .++. +.+
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g-~~V~-~~~   33 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAG-HQLH-VTT   33 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTT-CEEE-ECC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCC-CEEE-EEc
Confidence            479999999999999999998774 6764 444

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.30  E-value=0.0017  Score=56.98  Aligned_cols=102  Identities=18%  Similarity=0.121  Sum_probs=56.9

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecccc-ChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+++||.|.|+ |.+|+.+++.|.+++ .++.++..... .......+.   .    +.      ..+         +.+
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~~~---~----l~------~~~---------v~~   64 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPGPRSPSKAKIFK---A----LE------DKG---------AII   64 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSSCCCHHHHHHHH---H----HH------HTT---------CEE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCCCCChhHHHHHH---H----HH------hCC---------cEE
Confidence            44579999999 999999999999886 67777765421 111111000   0    00      011         111


Q ss_pred             Eec--CCCCCCCcccc--cccEEEEecCCc---ccHHhHHHHHhCC-CCeEEEcC
Q 024565           79 FGV--RNPEEIPWAET--GAEYVVESTGVF---TDKDKAAAHLKGG-AKKVIISA  125 (265)
Q Consensus        79 ~~~--~~~~~~~~~~~--~~DvV~~at~~~---~~~~~~~~~~~~G-~~~vvis~  125 (265)
                      +..  .|++++.-...  ++|+||.|++..   .+...++.+.+.| +++++.|.
T Consensus        65 ~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v~S~  119 (346)
T 3i6i_A           65 VYGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSE  119 (346)
T ss_dssp             EECCTTCHHHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEECSC
T ss_pred             EEeecCCHHHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHcCCceEEeecc
Confidence            110  12222111113  799999998852   3455677777888 88777653

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=96.26  E-value=0.0017  Score=57.77  Aligned_cols=32  Identities=22%  Similarity=0.172  Sum_probs=24.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+||+|+|+|.+|..++..|.+.. .+|.. .++
T Consensus        15 M~kI~iIG~G~mG~~la~~L~~~G-~~V~~-~~r   46 (366)
T 1evy_A           15 LNKAVVFGSGAFGTALAMVLSKKC-REVCV-WHM   46 (366)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTTE-EEEEE-ECS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCC-CEEEE-EEC
Confidence            349999999999999999998763 56544 444

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.23  E-value=0.039  Score=45.26  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=28.2

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +.+||-|.|+ |.+|+.+++.|.++. .+|+.+...
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G-~~V~~~~R~   54 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKG-HEPVAMVRN   54 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCC-CeEEEEECC
Confidence            4579999999 999999999999875 687777644

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=96.23  E-value=0.0086  Score=52.13  Aligned_cols=87  Identities=21%  Similarity=0.169  Sum_probs=60.7

Q ss_pred             ccEEEEE-cc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGIN-GF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~-G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      +.+++|+ |+ |..|..+++.|.++. +++++.+++......                            +.|  ++++ 
T Consensus        13 ~~siaVV~Gasg~~G~~~~~~l~~~G-~~~v~~VnP~~~g~~----------------------------i~G--~~vy-   60 (305)
T 2fp4_A           13 KNTKVICQGFTGKQGTFHSQQALEYG-TNLVGGTTPGKGGKT----------------------------HLG--LPVF-   60 (305)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECTTCTTCE----------------------------ETT--EEEE-
T ss_pred             CCcEEEEECCCCCHHHHHHHHHHHCC-CcEEEEeCCCcCcce----------------------------ECC--eeee-
Confidence            4568888 99 999999999998874 776655555311100                            112  3454 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .+.++++ ....+|+++.|+|.....+.++++.++|++.+++
T Consensus        61 -~sl~el~-~~~~vD~avI~vP~~~~~~~~~e~i~~Gi~~iv~  101 (305)
T 2fp4_A           61 -NTVKEAK-EQTGATASVIYVPPPFAAAAINEAIDAEVPLVVC  101 (305)
T ss_dssp             -SSHHHHH-HHHCCCEEEECCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             -chHHHhh-hcCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence             2344442 0116999999999999999999999999987554

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.22  E-value=0.0041  Score=53.23  Aligned_cols=103  Identities=19%  Similarity=0.222  Sum_probs=57.3

Q ss_pred             CC-ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccC---hhhhhhheeecccCCcccccceeeeCCceEEECCEE
Q 024565            1 MG-KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFIT---TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP   75 (265)
Q Consensus         1 m~-~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~   75 (265)
                      |+ |++|.|.|+ |.+|+.+++.|.++. .++.++......   ......+.   .    +.      ..+         
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~~~~~---~----l~------~~~---------   57 (308)
T 1qyc_A            1 MGSRSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLLE---S----FK------ASG---------   57 (308)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHHHHHH---H----HH------TTT---------
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCcccccCHHHHHHHH---H----HH------hCC---------
Confidence            65 689999999 999999999999875 666665543211   11100000   0    00      001         


Q ss_pred             EEEEec--CCCCCCCcccccccEEEEecCCc---ccHHhHHHHHhCC-CCeEEEcCC
Q 024565           76 VTVFGV--RNPEEIPWAETGAEYVVESTGVF---TDKDKAAAHLKGG-AKKVIISAP  126 (265)
Q Consensus        76 ~~~~~~--~~~~~~~~~~~~~DvV~~at~~~---~~~~~~~~~~~~G-~~~vvis~~  126 (265)
                      +.++..  .|++.+.-...++|+||.|++..   .....++.+.++| ++++|.|..
T Consensus        58 v~~v~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~  114 (308)
T 1qyc_A           58 ANIVHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEF  114 (308)
T ss_dssp             CEEECCCTTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECSCC
T ss_pred             CEEEEeccCCHHHHHHHHcCCCEEEECCcchhhhhHHHHHHHHHhcCCCceEeeccc
Confidence            111110  12222211114789999998853   3456677777888 887776543

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.22  E-value=0.0046  Score=53.02  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=28.4

Q ss_pred             CC-ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            1 MG-KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         1 m~-~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+ |++|.|.|+ |.+|+.+++.|.++. .++.++...
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~   37 (313)
T 1qyd_A            1 MDKKSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRP   37 (313)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCS
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEECC
Confidence            65 689999999 999999999999875 677766543

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.19  E-value=0.0039  Score=52.46  Aligned_cols=33  Identities=12%  Similarity=0.178  Sum_probs=25.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |||+|+|+|.+|..+++.|.+....+ +.+.+++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~-v~~~~r~   33 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYR-IYIANRG   33 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCE-EEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCe-EEEECCC
Confidence            48999999999999999998764234 3555553

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.16  E-value=0.0051  Score=52.26  Aligned_cols=78  Identities=17%  Similarity=0.129  Sum_probs=47.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN   83 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   83 (265)
                      |||+|+|+|.+|..+++.|.+.. .++.. .++.  ......+.                ..|  +     .....  .+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g-~~V~~-~~~~--~~~~~~~~----------------~~g--~-----~~~~~--~~   51 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRG-HYLIG-VSRQ--QSTCEKAV----------------ERQ--L-----VDEAG--QD   51 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEE-ECSC--HHHHHHHH----------------HTT--S-----CSEEE--SC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCC-CEEEE-EECC--HHHHHHHH----------------hCC--C-----Ccccc--CC
Confidence            48999999999999999998774 56544 4543  21111110                001  0     00111  23


Q ss_pred             CCCCCcccccccEEEEecCCcccHHhHHHHH
Q 024565           84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHL  114 (265)
Q Consensus        84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~  114 (265)
                      ++++    .++|+||.|+|.....+.+..+.
T Consensus        52 ~~~~----~~~D~vi~av~~~~~~~~~~~l~   78 (279)
T 2f1k_A           52 LSLL----QTAKIIFLCTPIQLILPTLEKLI   78 (279)
T ss_dssp             GGGG----TTCSEEEECSCHHHHHHHHHHHG
T ss_pred             HHHh----CCCCEEEEECCHHHHHHHHHHHH
Confidence            3333    46899999999877666666543

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.14  E-value=0.0074  Score=49.19  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=27.0

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ||.+|.|.|+ |.+|+.+++.|.+..+.+|+.+...
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~   39 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQ   39 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecC
Confidence            3445999999 9999999999993345787776543

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.13  E-value=0.0083  Score=52.78  Aligned_cols=25  Identities=28%  Similarity=0.437  Sum_probs=21.7

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcC
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQR   25 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~   25 (265)
                      |+++||+|+|+|.+|..++..|.+.
T Consensus         6 m~~mkI~iIG~G~mG~~~a~~l~~~   30 (354)
T 1x0v_A            6 MASKKVCIVGSGNWGSAIAKIVGGN   30 (354)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhc
Confidence            5568999999999999999999765

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.13  E-value=0.0092  Score=52.00  Aligned_cols=89  Identities=19%  Similarity=0.265  Sum_probs=50.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhh-heeecc-cCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTY-MFKYDS-VHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ++||+|+|+|.+|..++..|.+.. .++..+. +. ..+.+.. -+..++ .++.             ..+.  .+.+. 
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g-~~V~~~~-r~-~~~~i~~~Gl~~~~~~~g~-------------~~~~--~~~~~-   62 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTG-HCVSVVS-RS-DYETVKAKGIRIRSATLGD-------------YTFR--PAAVV-   62 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTT-CEEEEEC-ST-THHHHHHHCEEEEETTTCC-------------EEEC--CSCEE-
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCC-CeEEEEe-CC-hHHHHHhCCcEEeecCCCc-------------EEEe--eeeeE-
Confidence            489999999999999999998764 5665554 32 1221110 000111 0111             1010  11122 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHH
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL  114 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~  114 (265)
                       .+++++   ..++|+||.|++.....+.++.+.
T Consensus        63 -~~~~~~---~~~~DlVilavK~~~~~~~l~~l~   92 (320)
T 3i83_A           63 -RSAAEL---ETKPDCTLLCIKVVEGADRVGLLR   92 (320)
T ss_dssp             -SCGGGC---SSCCSEEEECCCCCTTCCHHHHHT
T ss_pred             -CCHHHc---CCCCCEEEEecCCCChHHHHHHHH
Confidence             344444   137899999999988777666553

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.0058  Score=56.39  Aligned_cols=91  Identities=10%  Similarity=0.134  Sum_probs=54.1

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ++.||.|+|+|.+|+.+++.|.++++++++ |.++..+ .+.++     +.             .+  +    ..+ ...
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~-v~~R~~~ka~~la-----~~-------------~~--~----~~~-~~D   75 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDINVT-VACRTLANAQALA-----KP-------------SG--S----KAI-SLD   75 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTEEEE-EEESSHHHHHHHH-----GG-------------GT--C----EEE-ECC
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCCeEE-EEECCHHHHHHHH-----Hh-------------cC--C----cEE-EEe
Confidence            357899999999999999999998778754 4444321 22211     00             00  0    000 100


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      ..+.+++.-...++|+|+.|+|.+.+......+++.|.
T Consensus        76 ~~d~~~l~~~l~~~DvVIn~tp~~~~~~v~~a~l~~g~  113 (467)
T 2axq_A           76 VTDDSALDKVLADNDVVISLIPYTFHPNVVKSAIRTKT  113 (467)
T ss_dssp             TTCHHHHHHHHHTSSEEEECSCGGGHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHcCCCEEEECCchhhhHHHHHHHHhcCC
Confidence            01111110001468999999998877667777888886

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.11  E-value=0.0052  Score=52.33  Aligned_cols=32  Identities=19%  Similarity=0.154  Sum_probs=25.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCC-eEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDD-VELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~-~el~~v~~~   36 (265)
                      +||+|+|+|.+|..+++.|.+... .++. +.++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~-~~d~   34 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIY-GYDI   34 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEE-EECS
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEE-EEeC
Confidence            689999999999999999987642 2544 4555

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.05  E-value=0.0032  Score=54.70  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=25.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||+|+|+|.+|..+++.|.+.. .++ .+.++
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g-~~V-~~~~~   61 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMG-HTV-TVWNR   61 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTT-CCE-EEECS
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCC-CEE-EEEeC
Confidence            479999999999999999998764 565 44554

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.03  E-value=0.0098  Score=50.06  Aligned_cols=85  Identities=16%  Similarity=0.157  Sum_probs=50.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN   83 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   83 (265)
                      |||+|+|+|.+|..+++.|.+.. +++.. +++.........+.                +.|  +       .    .+
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g-~~V~~-~~~~~~~~~~~~~~----------------~~g--~-------~----~~   49 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRG-VEVVT-SLEGRSPSTIERAR----------------TVG--V-------T----ET   49 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT-CEEEE-CCTTCCHHHHHHHH----------------HHT--C-------E----EC
T ss_pred             CeEEEEechHHHHHHHHHHHHCC-CeEEE-eCCccCHHHHHHHH----------------HCC--C-------c----CC
Confidence            48999999999999999998774 56655 45421111111000                011  1       1    12


Q ss_pred             CCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +++.   ..++|+||.|+|.....+.+....+...+ +++
T Consensus        50 ~~~~---~~~aDvvi~~v~~~~~~~~~~~~~~~~~~-~vi   85 (264)
T 1i36_A           50 SEED---VYSCPVVISAVTPGVALGAARRAGRHVRG-IYV   85 (264)
T ss_dssp             CHHH---HHTSSEEEECSCGGGHHHHHHHHHTTCCS-EEE
T ss_pred             HHHH---HhcCCEEEEECCCHHHHHHHHHHHHhcCc-EEE
Confidence            3222   15689999999998766666655554333 444

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.99  E-value=0.013  Score=51.03  Aligned_cols=89  Identities=15%  Similarity=0.151  Sum_probs=49.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ++||+|+|+|.+|..++..|.+.. .++..+ .+....+.+..     .       +......+..+..   .+...  .
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G-~~V~l~-~~~~~~~~i~~-----~-------g~~~~~~~~~~~~---~~~~~--~   79 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAG-HEVILI-ARPQHVQAIEA-----T-------GLRLETQSFDEQV---KVSAS--S   79 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTT-CEEEEE-CCHHHHHHHHH-----H-------CEEEECSSCEEEE---CCEEE--S
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCC-CeEEEE-EcHhHHHHHHh-----C-------CeEEEcCCCcEEE---eeeee--C
Confidence            589999999999999999998764 566655 33212222110     0       0000011101111   12222  3


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHH
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHL  114 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~  114 (265)
                      +++++    .++|+||.|++.....+.++.+.
T Consensus        80 ~~~~~----~~~D~vilavk~~~~~~~l~~l~  107 (318)
T 3hwr_A           80 DPSAV----QGADLVLFCVKSTDTQSAALAMK  107 (318)
T ss_dssp             CGGGG----TTCSEEEECCCGGGHHHHHHHHT
T ss_pred             CHHHc----CCCCEEEEEcccccHHHHHHHHH
Confidence            34333    57899999999987666665543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=95.96  E-value=0.0079  Score=49.36  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=25.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||+|+|+|.+|+.+++.|.+.. .++.. .++
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g-~~V~~-~~r   59 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSG-FKVVV-GSR   59 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTT-CCEEE-EES
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCC-CEEEE-EeC
Confidence            579999999999999999998774 56544 444

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.96  E-value=0.0077  Score=53.57  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=25.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||+|+|+|.+|..++..|.+.. .++. +.++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G-~~V~-l~~r   60 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKG-QKVR-LWSY   60 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTT-CCEE-EECS
T ss_pred             CCeEEEECccHHHHHHHHHHHHCC-CeEE-EEeC
Confidence            579999999999999999999774 4544 3344

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.92  E-value=0.0024  Score=54.80  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=25.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +||+|+|+|.+|..+++.|.+.. .++. +.++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G-~~V~-~~dr   32 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAG-FDVT-VWNR   32 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHT-CCEE-EECS
T ss_pred             CeEEEEccCHHHHHHHHHHHHCC-CeEE-EEcC
Confidence            69999999999999999998764 5554 4455

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.91  E-value=0.0071  Score=52.65  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=29.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ++||+|+|+|++|..++..|...+.++ +.+.|..
T Consensus         2 ~~kI~VIGaG~vG~~~a~~la~~g~~~-v~L~Di~   35 (309)
T 1ur5_A            2 RKKISIIGAGFVGSTTAHWLAAKELGD-IVLLDIV   35 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSE-EEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCe-EEEEeCC
Confidence            479999999999999999998887667 7777764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.91  E-value=0.023  Score=42.53  Aligned_cols=31  Identities=23%  Similarity=0.483  Sum_probs=25.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      +.+|.|+|+|.+|+.+++.|.+.. .+++.+.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g-~~v~~~d   36 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMG-HEVLAVD   36 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT-CCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            457999999999999999998874 5655443

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=95.89  E-value=0.0064  Score=56.27  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=26.7

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+++||||+|+|.+|..+++.|.++. ++|. +.++
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G-~~V~-v~~r   46 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRG-YTVS-IFNR   46 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTT-CCEE-EECS
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCC-CeEE-EEeC
Confidence            77899999999999999999999874 5654 4444

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.87  E-value=0.0078  Score=50.40  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=26.3

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ..+||||+|+|.+|..+++.|.+.. .++.. .++
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G-~~V~~-~~r   50 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLG-HEVTI-GTR   50 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT-CEEEE-EES
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CEEEE-EeC
Confidence            4689999999999999999999874 56544 444

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.86  E-value=0.014  Score=51.18  Aligned_cols=35  Identities=34%  Similarity=0.386  Sum_probs=28.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI   38 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~   38 (265)
                      ++||+|+|+|.+|..++..|.....++ +.+.|...
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~-V~L~Di~~   48 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGD-VYMFDIIE   48 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEECCH
Confidence            469999999999999999998876447 67777643

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.83  E-value=0.025  Score=45.61  Aligned_cols=32  Identities=34%  Similarity=0.460  Sum_probs=27.4

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||.|.|+ |.+|+.+++.|.++. .+|+++...
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~   33 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRG-HEVTAIVRN   33 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEEcC
Confidence            47999999 999999999999885 788777654

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=95.82  E-value=0.0069  Score=55.96  Aligned_cols=34  Identities=21%  Similarity=0.416  Sum_probs=27.8

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+++||||+|+|.+|..+++.|.++. ++| .+.++
T Consensus         3 m~~~~IgvIG~G~mG~~lA~~L~~~G-~~V-~v~dr   36 (474)
T 2iz1_A            3 MAQANFGVVGMAVMGKNLALNVESRG-YTV-AIYNR   36 (474)
T ss_dssp             CTTBSEEEECCSHHHHHHHHHHHHTT-CCE-EEECS
T ss_pred             CCCCcEEEEeeHHHHHHHHHHHHhCC-CEE-EEEcC
Confidence            66689999999999999999999874 565 45555

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.80  E-value=0.013  Score=53.72  Aligned_cols=31  Identities=16%  Similarity=0.335  Sum_probs=25.5

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |+|||+|+|+|++|..++..|.+.. .+|+.+
T Consensus         1 M~mkI~VIG~G~vG~~lA~~La~~G-~~V~~~   31 (450)
T 3gg2_A            1 MSLDIAVVGIGYVGLVSATCFAELG-ANVRCI   31 (450)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhcC-CEEEEE
Confidence            1379999999999999999999874 676644

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.76  E-value=0.0077  Score=51.29  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=24.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +||+|+|+|.+|..+++.|.+  +.++. +.++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~--g~~V~-~~~~   31 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR--RFPTL-VWNR   31 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT--TSCEE-EECS
T ss_pred             CeEEEEcccHHHHHHHHHHhC--CCeEE-EEeC
Confidence            689999999999999999987  56754 5555

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.74  E-value=0.013  Score=53.72  Aligned_cols=92  Identities=10%  Similarity=0.093  Sum_probs=50.4

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |++.+|.|+|+|.+|+.+++.|.+.. .+ +.++++..+ .+.++      .   .+.        +  +     .....
T Consensus         1 M~~k~VlViGaG~iG~~ia~~L~~~G-~~-V~v~~R~~~~a~~la------~---~~~--------~--~-----~~~~~   54 (450)
T 1ff9_A            1 MATKSVLMLGSGFVTRPTLDVLTDSG-IK-VTVACRTLESAKKLS------A---GVQ--------H--S-----TPISL   54 (450)
T ss_dssp             -CCCEEEEECCSTTHHHHHHHHHTTT-CE-EEEEESSHHHHHHTT------T---TCT--------T--E-----EEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCc-CE-EEEEECCHHHHHHHH------H---hcC--------C--c-----eEEEe
Confidence            77789999999999999999999754 67 445555321 11111      0   000        0  0     00000


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      .-.+.+++.-...++|+|+.|+|...+......+++.|.
T Consensus        55 Dv~d~~~l~~~l~~~DvVIn~a~~~~~~~i~~a~l~~g~   93 (450)
T 1ff9_A           55 DVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKK   93 (450)
T ss_dssp             CTTCHHHHHHHHTTSSEEEECCC--CHHHHHHHHHHHTC
T ss_pred             ecCCHHHHHHHHcCCcEEEECCccccchHHHHHHHhCCC
Confidence            001111110001468999999998777666667777775

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=95.70  E-value=0.0047  Score=52.94  Aligned_cols=31  Identities=23%  Similarity=0.580  Sum_probs=24.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||+|+|+|.+|..+++.|.+.. .++. +.++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g-~~V~-~~~~   31 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHG-YPLI-IYDV   31 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CeEEEEeccHHHHHHHHHHHHCC-CEEE-EEeC
Confidence            37999999999999999998774 5654 4555

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.70  E-value=0.0072  Score=52.10  Aligned_cols=97  Identities=16%  Similarity=0.118  Sum_probs=55.8

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecccc-ChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe-
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG-   80 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-   80 (265)
                      .+|.|.|+ |.+|+.+++.|.++. .++.++..... ....+..+          .      ..+         +.++. 
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~l----------~------~~~---------v~~v~~   65 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLG-HPTYVFTRPNSSKTTLLDEF----------Q------SLG---------AIIVKG   65 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECTTCSCHHHHHHH----------H------HTT---------CEEEEC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCC-CcEEEEECCCCchhhHHHHh----------h------cCC---------CEEEEe
Confidence            48999999 999999999999875 67776654321 11100000          0      001         01111 


Q ss_pred             -cCCCCCCCcccccccEEEEecCC---cccHHhHHHHHhCC-CCeEEEcCC
Q 024565           81 -VRNPEEIPWAETGAEYVVESTGV---FTDKDKAAAHLKGG-AKKVIISAP  126 (265)
Q Consensus        81 -~~~~~~~~~~~~~~DvV~~at~~---~~~~~~~~~~~~~G-~~~vvis~~  126 (265)
                       -.|++.+.-...++|+||.|++.   ......++.+.++| ++++|.|..
T Consensus        66 Dl~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~  116 (318)
T 2r6j_A           66 ELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDF  116 (318)
T ss_dssp             CTTCHHHHHHHHTTCSEEEECCCGGGSTTHHHHHHHHHHHCCCCEEECSCC
T ss_pred             cCCCHHHHHHHHcCCCEEEECCchhhhHHHHHHHHHHHhcCCCCEEEeecc
Confidence             01222221111478999999874   23556667777788 887776543

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.69  E-value=0.011  Score=51.94  Aligned_cols=36  Identities=31%  Similarity=0.380  Sum_probs=28.5

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |+++||+|+|+|.+|..++..|..++-.+ +.+.|..
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~-v~l~Di~   38 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGD-VVLFDIA   38 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCce-EEEEeCC
Confidence            77789999999999999999998876334 4455553

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.69  E-value=0.0095  Score=52.20  Aligned_cols=37  Identities=35%  Similarity=0.446  Sum_probs=29.7

Q ss_pred             CC-ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc
Q 024565            1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI   38 (265)
Q Consensus         1 m~-~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~   38 (265)
                      |+ ++||+|+|+|.+|..++..|...+.++ +.+.|...
T Consensus         1 m~~~~kI~VIGaG~vG~~ia~~la~~g~~~-v~L~Di~~   38 (322)
T 1t2d_A            1 MAPKAKIVLVGSGMIGGVMATLIVQKNLGD-VVLFDIVK   38 (322)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCH
Confidence            54 579999999999999999999886557 77777643

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.69  E-value=0.025  Score=52.07  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=26.5

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .++||+|+|+|.||..++..|.+.. ++|+. .+.
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G-~~V~l-~D~   68 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVG-ISVVA-VES   68 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTT-CEEEE-ECS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCC-CeEEE-EEC
Confidence            4578999999999999999998874 66654 444

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.68  E-value=0.03  Score=48.90  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=28.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ++||+|+|+|++|..++..|...+.+.-+.+.|..
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~   41 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   41 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            47999999999999999999988645445566653

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.68  E-value=0.0076  Score=51.46  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=28.4

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +++|-|.|+ |.+|+.+++.|.++++.++.++...
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~   39 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRN   39 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcC
Confidence            478999999 9999999999998755777777643

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=95.67  E-value=0.015  Score=51.06  Aligned_cols=30  Identities=27%  Similarity=0.388  Sum_probs=25.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .+|||+|+|.||+.+++.|... ++++.+..
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~-G~~V~~~d  167 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASAL-GMHVIGVN  167 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhC-CCEEEEEC
Confidence            6899999999999999999877 48877654

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=95.67  E-value=0.0035  Score=55.28  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .+||+|+|+|.+|..+++.|.+.. ++++ +.++
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G-~~V~-~~~~   47 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSG-VDVT-VGLR   47 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTT-CCEE-EECC
T ss_pred             CCEEEEECchHHHHHHHHHHHHCc-CEEE-EEEC
Confidence            468999999999999999998774 5654 4444

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=95.66  E-value=0.0065  Score=52.74  Aligned_cols=33  Identities=27%  Similarity=0.337  Sum_probs=26.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |.|||+||.|.||..+++.|.+.. +++. +.+++
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G-~~v~-v~dr~   35 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAG-YLLN-VFDLV   35 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTT-CEEE-EECSS
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCC-CeEE-EEcCC
Confidence            579999999999999999999874 5544 55553

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.63  E-value=0.023  Score=49.96  Aligned_cols=35  Identities=29%  Similarity=0.290  Sum_probs=28.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .+||+|+|+|.+|..++..|...+-+.-+.+.|..
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~   55 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVM   55 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            47999999999999999999887655445666653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.60  E-value=0.0039  Score=47.63  Aligned_cols=32  Identities=22%  Similarity=0.147  Sum_probs=27.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .||+|+|+|.+|+.+++.|.+. +++ +.+.++.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~-g~~-v~v~~r~   53 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYP-QYK-VTVAGRN   53 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTT-TCE-EEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCE-EEEEcCC
Confidence            6899999999999999998875 588 7777764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.59  E-value=0.027  Score=43.38  Aligned_cols=31  Identities=32%  Similarity=0.454  Sum_probs=26.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ..+|.|+|+|.+|+.+++.|.+.. .+++.+.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g-~~V~vid   49 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSG-HSVVVVD   49 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence            468999999999999999998875 5766554

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.58  E-value=0.035  Score=48.09  Aligned_cols=34  Identities=29%  Similarity=0.399  Sum_probs=25.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +||+|+|+|.+|..++..|.+..-..-+.+.++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~   35 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            7999999999999999999876421223455553

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.56  E-value=0.0042  Score=53.93  Aligned_cols=33  Identities=18%  Similarity=0.499  Sum_probs=26.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ++||||+|+|.+|..+++.|.+.. +++. +.+++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G-~~V~-~~dr~   41 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQG-KRVA-IWNRS   41 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTT-CCEE-EECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CEEE-EEeCC
Confidence            478999999999999999999874 5654 44553

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.56  E-value=0.031  Score=47.36  Aligned_cols=30  Identities=23%  Similarity=0.355  Sum_probs=24.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |||+|+|+|.+|..++..|.+.. .++..+.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g-~~V~~~~   30 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQG-HEVQGWL   30 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCC-CCEEEEE
Confidence            48999999999999999998774 4655543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.53  E-value=0.034  Score=48.04  Aligned_cols=30  Identities=33%  Similarity=0.383  Sum_probs=24.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +||||+|+|.||..+++.|. . +++|+.. ++
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-a-G~~V~v~-d~   42 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-S-KHEVVLQ-DV   42 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-T-TSEEEEE-CS
T ss_pred             CeEEEEeeCHHHHHHHHHHH-c-CCEEEEE-EC
Confidence            68999999999999999999 6 5776544 44

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.53  E-value=0.011  Score=51.35  Aligned_cols=31  Identities=16%  Similarity=0.310  Sum_probs=23.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ++||+|+|+|.+|..++..|.+.. .++..+.
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g-~~V~~~~   32 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSG-EDVHFLL   32 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTS-CCEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC-CeEEEEE
Confidence            479999999999999999998764 4555444

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.52  E-value=0.01  Score=51.98  Aligned_cols=32  Identities=16%  Similarity=0.321  Sum_probs=25.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .+||+|+|+|.+|..+++.|.+.. .+|. +.++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G-~~V~-~~~r   45 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENG-EEVI-LWAR   45 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCC-CeEE-EEeC
Confidence            589999999999999999998764 4554 3444

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=95.50  E-value=0.0073  Score=52.08  Aligned_cols=32  Identities=22%  Similarity=0.453  Sum_probs=25.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC----C-eEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD----D-VELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p----~-~el~~v~   34 (265)
                      +|||+|+|+|.+|..++..|.+.+    + .++..+.
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~   44 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIA   44 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEE
Confidence            479999999999999999998761    3 5665443

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.48  E-value=0.04  Score=47.69  Aligned_cols=33  Identities=30%  Similarity=0.427  Sum_probs=26.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCe-EEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~-el~~v~~~   36 (265)
                      ++||+|+|+|.+|..++..|.....+ +++ +.++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~-l~d~   40 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIV-LEDI   40 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEE-EECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEeC
Confidence            47999999999999999999877533 554 5554

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.46  E-value=0.034  Score=47.62  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=28.0

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+||-|.|+ |++|+.+++.|.++. .+|.++...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   35 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDG-NTPIILTRS   35 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCC
Confidence            589999999 999999999999885 677776643

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.46  E-value=0.04  Score=47.47  Aligned_cols=28  Identities=32%  Similarity=0.496  Sum_probs=22.9

Q ss_pred             ccEEEEEc-cChhHHHHHHHHHcCCCeEEE
Q 024565            3 KVKIGING-FGRIGRLVARVILQRDDVELV   31 (265)
Q Consensus         3 ~i~vgI~G-~G~~G~~l~~~L~~~p~~el~   31 (265)
                      +.||+|+| +|.+|..+++.|.+.. .++.
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G-~~V~   49 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASG-YPIS   49 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTT-CCEE
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCC-CeEE
Confidence            35899999 8999999999998764 4543

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=95.43  E-value=0.053  Score=49.77  Aligned_cols=84  Identities=18%  Similarity=0.212  Sum_probs=60.7

Q ss_pred             CccEEEEEccC----hhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEE
Q 024565            2 GKVKIGINGFG----RIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT   77 (265)
Q Consensus         2 ~~i~vgI~G~G----~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~   77 (265)
                      ...+|+|+|++    ..|..+++.|.++..-.+..|+ +.  ..         +                   +.|  ++
T Consensus         7 ~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVn-P~--~~---------~-------------------i~G--~~   53 (457)
T 2csu_A            7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVN-IK--EE---------E-------------------VQG--VK   53 (457)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEEC-SS--CS---------E-------------------ETT--EE
T ss_pred             CCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEEC-CC--CC---------e-------------------ECC--Ee
Confidence            35789999994    6799999999887534444443 32  10         0                   012  34


Q ss_pred             EEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        78 ~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      ++  .+.++++   ..+|+++.|+|.....+.++++.+.|+|.+++
T Consensus        54 ~y--~sl~~lp---~~~Dlavi~vp~~~~~~~v~e~~~~Gi~~vv~   94 (457)
T 2csu_A           54 AY--KSVKDIP---DEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVI   94 (457)
T ss_dssp             CB--SSTTSCS---SCCSEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             cc--CCHHHcC---CCCCEEEEecCHHHHHHHHHHHHHcCCCEEEE
Confidence            44  4566663   46999999999999999999999999997775

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=95.41  E-value=0.017  Score=51.43  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC
Q 024565            3 KVKIGINGFGRIGRLVARVILQR   25 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~   25 (265)
                      |+||+|+|+|.+|..++..|.+.
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~   43 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTN   43 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHc
Confidence            57999999999999999998764

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.37  E-value=0.013  Score=51.43  Aligned_cols=36  Identities=28%  Similarity=0.303  Sum_probs=27.7

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |+++||+|+|+|.+|..++..|..++..+ +.+.|..
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~-v~L~Di~   40 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGD-VVLFDIA   40 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCC
Confidence            67789999999999999999998775335 4455553

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.32  E-value=0.01  Score=51.21  Aligned_cols=101  Identities=17%  Similarity=0.157  Sum_probs=56.9

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccc-cC--hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPF-IT--TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |++|.|.|+ |.+|+.+++.|.++. .++.++.... ..  ......+.   .    +.      ..+  +       .+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~l~---~----~~------~~~--v-------~~   60 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYARPLTPDSTPSSVQLRE---E----FR------SMG--V-------TI   60 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECCCCTTCCHHHHHHHH---H----HH------HTT--C-------EE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEECCcccccChHHHHHHH---H----hh------cCC--c-------EE
Confidence            578999999 999999999999875 6777665432 10  11100000   0    00      001  0       11


Q ss_pred             Ee--cCCCCCCCcccccccEEEEecCC---cccHHhHHHHHhCC-CCeEEEcCC
Q 024565           79 FG--VRNPEEIPWAETGAEYVVESTGV---FTDKDKAAAHLKGG-AKKVIISAP  126 (265)
Q Consensus        79 ~~--~~~~~~~~~~~~~~DvV~~at~~---~~~~~~~~~~~~~G-~~~vvis~~  126 (265)
                      +.  -.|++.+.-...++|+||.|++.   ......++.+.++| ++++|.|..
T Consensus        61 v~~D~~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~  114 (321)
T 3c1o_A           61 IEGEMEEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDF  114 (321)
T ss_dssp             EECCTTCHHHHHHHHTTCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEECSCC
T ss_pred             EEecCCCHHHHHHHHcCCCEEEECCCccchhhHHHHHHHHHHhCCccEEecccc
Confidence            11  01222221112478999999885   33556677777888 887775543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.25  E-value=0.039  Score=44.98  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=20.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRD   26 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p   26 (265)
                      ++||+|+|+|.+|..+++.|.+..
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g   42 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAG   42 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC
Confidence            579999999999999999998763

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.22  E-value=0.028  Score=51.99  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=26.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +.||||+|+|.||..++..|.+.. ++|+ +.+++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG-~~V~-l~D~~   37 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHG-HQVL-LYDIS   37 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTT-CCEE-EECSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC-CeEE-EEECC
Confidence            469999999999999999998774 5654 44553

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.21  E-value=0.0074  Score=51.58  Aligned_cols=32  Identities=28%  Similarity=0.265  Sum_probs=26.6

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |++|.|.|+ |.+|+.+++.|.++. .++.++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R   34 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAG-NPTYALVR   34 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHT-CCEEEEEC
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCC-CcEEEEEC
Confidence            478999999 999999999998875 66666654

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=95.19  E-value=0.14  Score=44.28  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=27.6

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      ++++|-|.|+ |++|+.+++.|.+.. .+|.++..
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   59 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDN   59 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence            4689999999 999999999999874 67777654

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=95.18  E-value=0.017  Score=50.37  Aligned_cols=35  Identities=11%  Similarity=0.198  Sum_probs=27.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ++||+|+|+|.+|..++..|...+-+.-+.+.|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            57999999999999999998876544445566654

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.16  E-value=0.032  Score=49.09  Aligned_cols=36  Identities=31%  Similarity=0.384  Sum_probs=28.7

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..+||+|+|+|.+|..++..|+..+.+.-+.+.|..
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            458999999999999999988887655455666654

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.15  E-value=0.015  Score=50.83  Aligned_cols=34  Identities=26%  Similarity=0.386  Sum_probs=27.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |||+|+|+|.+|..++..|..++-++-+.+.|..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   34 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIK   34 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCc
Confidence            5899999999999999999887755445666654

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.14  E-value=0.053  Score=46.95  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=26.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +||+|+|+|.+|..++..|.....+.-+.+.|..
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~   34 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD   34 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4899999999999999999887644335556653

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.07  E-value=0.1  Score=42.68  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=27.0

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCe-EEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDV-ELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~-el~~v~~   35 (265)
                      .++|-|.|+ |.+|+.+++.|.++..+ +|+.+..
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r   52 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGR   52 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEc
Confidence            468999999 99999999999988643 7766653

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.03  E-value=0.067  Score=46.89  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=29.2

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..+||+|+|+|.+|..++..|...+-+.-+.+.|..
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            357999999999999999999988766555666653

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.00  E-value=0.019  Score=50.35  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=27.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||+|+|+|.+|..++..|...+.+.-+.+.|.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~   38 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDV   38 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEec
Confidence            4799999999999999999988775544455565

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=94.99  E-value=0.029  Score=48.19  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=25.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      -.+|+|+|+|.+|+.+++.|.... +++.+. ++
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G-~~V~~~-dr  186 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALG-AKVKVG-AR  186 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CEEEEE-ES
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCC-CEEEEE-EC
Confidence            368999999999999999998775 676544 44

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.99  E-value=0.022  Score=46.47  Aligned_cols=31  Identities=29%  Similarity=0.354  Sum_probs=25.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |||.|+|+|.+|+.+++.|.+.. .+++.+..
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g-~~v~vid~   31 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRK-YGVVIINK   31 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTT-CCEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CeEEEEEC
Confidence            47999999999999999998773 67776653

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=94.95  E-value=0.06  Score=46.48  Aligned_cols=33  Identities=33%  Similarity=0.514  Sum_probs=27.7

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +|||-|.|+ |.+|+.+++.|.++. .+|+++...
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   46 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAG-HDLVLIHRP   46 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecC
Confidence            469999999 999999999999874 677777643

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=94.94  E-value=0.02  Score=50.21  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=25.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      -.+|||+|+|.||+.+++.|... ++++.+..
T Consensus       140 g~tvGIIGlG~IG~~vA~~l~~~-G~~V~~~d  170 (324)
T 3hg7_A          140 GRTLLILGTGSIGQHIAHTGKHF-GMKVLGVS  170 (324)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEC
T ss_pred             cceEEEEEECHHHHHHHHHHHhC-CCEEEEEc
Confidence            36899999999999999999877 47776553

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.90  E-value=0.028  Score=48.30  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=23.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ++||+|+|+|.+|..++..|.+.. .++..+.
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g-~~V~~~~   32 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSL-PHTTLIG   32 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHC-TTCEEEE
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEE
Confidence            479999999999999999988653 3444443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=94.88  E-value=0.029  Score=51.85  Aligned_cols=32  Identities=9%  Similarity=0.187  Sum_probs=26.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||||+|+|.+|..+++.|.++. ++| .+.++
T Consensus         2 ~m~IgvIG~G~mG~~lA~~La~~G-~~V-~v~dr   33 (482)
T 2pgd_A            2 QADIALIGLAVMGQNLILNMNDHG-FVV-CAFNR   33 (482)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTT-CCE-EEECS
T ss_pred             CCeEEEEChHHHHHHHHHHHHHCC-CeE-EEEeC
Confidence            468999999999999999999874 565 45555

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=94.85  E-value=0.044  Score=50.41  Aligned_cols=93  Identities=17%  Similarity=0.204  Sum_probs=56.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeE--EEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVE--LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~e--l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ++||.|+|+|-||+.++++|.++++++  =+.+.|+......+..     .             .|  +.+  ....+ .
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~-----~-------------~g--~~~--~~~~V-d   69 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQ-----Q-------------YG--VSF--KLQQI-T   69 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHH-----H-------------HT--CEE--EECCC-C
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHh-----h-------------cC--Cce--eEEec-c
Confidence            478999999999999999999998774  2233344212211110     0             01  000  00001 0


Q ss_pred             cCC----CCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRN----PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~----~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      ..+    .+.+ .  .+.|+|+.+++...+...++.++++|+  -.+
T Consensus        70 adnv~~~l~aL-l--~~~DvVIN~s~~~~~l~Im~acleaGv--~Yl  111 (480)
T 2ph5_A           70 PQNYLEVIGST-L--EENDFLIDVSIGISSLALIILCNQKGA--LYI  111 (480)
T ss_dssp             TTTHHHHTGGG-C--CTTCEEEECCSSSCHHHHHHHHHHHTC--EEE
T ss_pred             chhHHHHHHHH-h--cCCCEEEECCccccCHHHHHHHHHcCC--CEE
Confidence            111    1222 1  224999999999999999999999998  666

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.84  E-value=0.023  Score=49.03  Aligned_cols=31  Identities=19%  Similarity=0.338  Sum_probs=25.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      -.+|+|+|+|.+|+.+++.|.... +++.+..
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G-~~V~~~d  187 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALG-ANVKVGA  187 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCC-CEEEEEE
Confidence            368999999999999999998775 6765443

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.72  E-value=0.047  Score=49.68  Aligned_cols=31  Identities=32%  Similarity=0.580  Sum_probs=25.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||+|+|+|++|..++..|.+.. .+++.+ ++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G-~~V~~~-d~   31 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARG-HEVIGV-DV   31 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEE-EC
Confidence            48999999999999999999874 576554 44

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=94.70  E-value=0.03  Score=48.62  Aligned_cols=30  Identities=17%  Similarity=0.282  Sum_probs=24.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |||+|+|+|.+|..++..|.+.. .++..+.
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g-~~V~~~~   30 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNG-NEVRIWG   30 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC-CEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC-CeEEEEE
Confidence            48999999999999999998764 4655443

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.63  E-value=0.013  Score=51.16  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=26.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +.||+|+|+|.+|..++..|...+ +.-+.+.|..
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g-~~~v~l~D~~   41 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKE-LADVVLVDIP   41 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CCEEEEECCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CCeEEEEecc
Confidence            369999999999999999998876 4334455553

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=94.61  E-value=0.029  Score=49.47  Aligned_cols=30  Identities=27%  Similarity=0.371  Sum_probs=24.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      -++|||+|+|.||+.+++.|... ++++.+.
T Consensus       171 gktiGIIGlG~IG~~vA~~l~~~-G~~V~~~  200 (340)
T 4dgs_A          171 GKRIGVLGLGQIGRALASRAEAF-GMSVRYW  200 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-TCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEE
Confidence            36899999999999999999876 4776543

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=94.60  E-value=0.025  Score=47.77  Aligned_cols=31  Identities=13%  Similarity=0.388  Sum_probs=26.8

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |||-|.|+ |++|+.+++.|.++. .+|.++..
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r   37 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEE-YDIYPFDK   37 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTT-EEEEEECT
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCC-CEEEEecc
Confidence            59999999 999999999999874 78777754

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=94.48  E-value=0.019  Score=50.12  Aligned_cols=31  Identities=26%  Similarity=0.363  Sum_probs=26.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      -++|||+|+|.||+.+++.|... ++++.+..
T Consensus       139 g~tvGIiG~G~IG~~vA~~l~~~-G~~V~~~d  169 (315)
T 3pp8_A          139 EFSVGIMGAGVLGAKVAESLQAW-GFPLRCWS  169 (315)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTT-TCCEEEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHC-CCEEEEEc
Confidence            36899999999999999999877 47776654

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.44  E-value=0.032  Score=49.05  Aligned_cols=36  Identities=31%  Similarity=0.420  Sum_probs=30.5

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+|+||.|.|+ |++|+.+++.|.+.++.+|.++...
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   58 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQ   58 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCC
Confidence            56789999999 9999999999998866888887654

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=94.36  E-value=0.041  Score=51.09  Aligned_cols=33  Identities=9%  Similarity=0.192  Sum_probs=26.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..||||+|+|.||..+++.|.++. ++|. +.+++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G-~~V~-v~dr~   42 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHG-FTVC-AYNRT   42 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT-CCEE-EECSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCC-CEEE-EEeCC
Confidence            478999999999999999999874 5654 45553

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=94.34  E-value=0.043  Score=47.90  Aligned_cols=34  Identities=24%  Similarity=0.223  Sum_probs=28.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +||+|+|+|.+|..++..|..++.+.-+.+.|..
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            7999999999999999999887756556666763

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=94.32  E-value=0.046  Score=45.92  Aligned_cols=32  Identities=25%  Similarity=0.489  Sum_probs=26.6

Q ss_pred             EEEEEcc-ChhHHHHHHHHHcC-CCeEEEEEecc
Q 024565            5 KIGINGF-GRIGRLVARVILQR-DDVELVAVNDP   36 (265)
Q Consensus         5 ~vgI~G~-G~~G~~l~~~L~~~-p~~el~~v~~~   36 (265)
                      ||.|.|+ |.+|+.+++.|.++ ++.++.++...
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~   34 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRN   34 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcC
Confidence            5889999 99999999999986 46788777643

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=94.29  E-value=0.052  Score=45.70  Aligned_cols=33  Identities=24%  Similarity=0.545  Sum_probs=27.4

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcC-CCeEEEEEecc
Q 024565            4 VKIGINGF-GRIGRLVARVILQR-DDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~-p~~el~~v~~~   36 (265)
                      ++|-|.|+ |.+|+.+++.|.++ ++.++.++...
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~   35 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRN   35 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcC
Confidence            36999999 99999999999987 56788777643

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=94.28  E-value=0.086  Score=46.35  Aligned_cols=33  Identities=27%  Similarity=0.277  Sum_probs=27.4

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +++|.|.|+ |.+|+.+++.|.++. .++.++...
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~   38 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHS   38 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECC
Confidence            478999999 999999999998864 677776643

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=94.09  E-value=0.037  Score=49.02  Aligned_cols=29  Identities=31%  Similarity=0.450  Sum_probs=24.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      ++|||+|+|.||+.+++.|... ++++.+.
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~-G~~V~~~  193 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPF-GCNLLYH  193 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGG-CCEEEEE
T ss_pred             CEEeEEEeCHHHHHHHHHHHHC-CCEEEEe
Confidence            6899999999999999999876 4776544

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.04  E-value=0.073  Score=48.71  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=26.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      .+|++|+|+|++|..++..|.+.. .+|+++.-
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G-~~V~~~D~   39 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFG-HEVVCVDK   39 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence            479999999999999999999874 67766543

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=94.03  E-value=0.38  Score=44.45  Aligned_cols=33  Identities=18%  Similarity=0.369  Sum_probs=28.2

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +|||.|.|+ |++|+.+++.|.+.. .+|+++...
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G-~~V~~l~R~  180 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGG-HEVIQLVRK  180 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECC
Confidence            689999999 999999999999885 677777643

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=93.94  E-value=0.034  Score=48.05  Aligned_cols=34  Identities=35%  Similarity=0.447  Sum_probs=27.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |||+|+|+|.+|..++..|..++.+.-+.+.|..
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~   34 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            4899999999999999999887655445566653

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=93.88  E-value=0.067  Score=47.28  Aligned_cols=27  Identities=30%  Similarity=0.493  Sum_probs=23.7

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCC
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDD   27 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~   27 (265)
                      |+.+||+|+|+ |.+|..++.+|...+-
T Consensus        22 ~~~vKVaViGAaG~IG~~la~~la~~~l   49 (345)
T 4h7p_A           22 MSAVKVAVTGAAGQIGYALVPLIARGAL   49 (345)
T ss_dssp             CCCEEEEEESTTSHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEECcCcHHHHHHHHHHHhccc
Confidence            66789999998 9999999998887653

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=93.86  E-value=0.063  Score=46.74  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=26.0

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcC-CCeEEEEEeccc
Q 024565            4 VKIGINGF-GRIGRLVARVILQR-DDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~-p~~el~~v~~~~   37 (265)
                      |||+|+|+ |.+|..++.+|..+ +-..-+.+.|..
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~   36 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecC
Confidence            58999996 99999999999876 544445555553

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=93.84  E-value=0.14  Score=44.59  Aligned_cols=34  Identities=32%  Similarity=0.439  Sum_probs=25.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +||+|+|+|.+|..++..|.......-+.+.|..
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            4899999999999999998876433234455553

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.83  E-value=0.05  Score=40.93  Aligned_cols=32  Identities=16%  Similarity=0.177  Sum_probs=26.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |.+|.|+|+|++|+.+++.|.++. .+++.+-.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g-~~V~~id~   37 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAG-KKVLAVDK   37 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT-CCEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CeEEEEEC
Confidence            468999999999999999999874 67666543

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=93.75  E-value=0.08  Score=46.31  Aligned_cols=34  Identities=21%  Similarity=0.395  Sum_probs=27.3

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCe-EEEEEec
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDV-ELVAVND   35 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~-el~~v~~   35 (265)
                      +.++|-|.|+ |.+|+.+++.|.+.++. +|+.+..
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r   55 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSR   55 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEES
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEEC
Confidence            3578999999 99999999999987334 7766654

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.65  E-value=0.049  Score=50.30  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=27.4

Q ss_pred             CccEEEEEccChhHHHHHHHHHcC-CCeEEEEEe
Q 024565            2 GKVKIGINGFGRIGRLVARVILQR-DDVELVAVN   34 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~   34 (265)
                      +|+||+|+|+|++|..++..|.++ ++.+|+.+.
T Consensus         8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D   41 (481)
T 2o3j_A            8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVD   41 (481)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEE
Confidence            467999999999999999999876 367777653

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.60  E-value=0.026  Score=49.88  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +.||+|+|+|.||..+++.|.+.. .++. ++++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G-~~V~-~~dr   39 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAAN-HSVF-GYNR   39 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCC-CEEE-EEeC
Confidence            468999999999999999999874 5654 4444

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.49  E-value=0.071  Score=40.80  Aligned_cols=34  Identities=12%  Similarity=0.091  Sum_probs=28.6

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |...+|.|+|+|++|+.+++.|.+.. .+++.|..
T Consensus         1 ~~~~~vlI~G~G~vG~~la~~L~~~g-~~V~vid~   34 (153)
T 1id1_A            1 HRKDHFIVCGHSILAINTILQLNQRG-QNVTVISN   34 (153)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTT-CCEEEEEC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEEC
Confidence            77789999999999999999998764 67776654

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=93.48  E-value=0.081  Score=45.85  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=24.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCC-CeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~   36 (265)
                      |||+|+|+|++|..++..|...+ ..+++ +.|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~-l~D~   33 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELV-LLDV   33 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEE-EECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEeC
Confidence            48999999999999999998763 34544 4444

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=93.38  E-value=0.058  Score=49.57  Aligned_cols=33  Identities=27%  Similarity=0.293  Sum_probs=26.9

Q ss_pred             CC-ccEEEEEccChhHHHHHHHHHcC-CCeEEEEE
Q 024565            1 MG-KVKIGINGFGRIGRLVARVILQR-DDVELVAV   33 (265)
Q Consensus         1 m~-~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v   33 (265)
                      |+ |+||+|+|+|++|..++..|.+. ++.+++.+
T Consensus         2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~   36 (467)
T 2q3e_A            2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVV   36 (467)
T ss_dssp             CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence            54 57999999999999999999876 35776555

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=93.38  E-value=0.055  Score=49.94  Aligned_cols=31  Identities=23%  Similarity=0.467  Sum_probs=25.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||||+|+|.+|..+++.|.++. .+|. +.++
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G-~~V~-v~dr   32 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKG-FKVA-VFNR   32 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CEEEEEChHHHHHHHHHHHHHCC-CEEE-EEeC
Confidence            58999999999999999999875 5654 5555

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=93.34  E-value=0.092  Score=38.93  Aligned_cols=31  Identities=26%  Similarity=0.530  Sum_probs=25.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .+||.|+|+|.+|+.+++.|.+.. .+++.+.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g-~~v~~~d   34 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKG-HDIVLID   34 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence            478999999999999999998874 6766553

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=93.16  E-value=0.11  Score=44.10  Aligned_cols=33  Identities=15%  Similarity=0.183  Sum_probs=26.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .+||+|+|+|.+|+.+++.|.+.. +++ .+++++
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g-~~V-~v~~r~  161 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEG-AKV-FLWNRT  161 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHT-CEE-EEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHcC-CEE-EEEECC
Confidence            368999999999999999998875 454 555553

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.16  E-value=0.36  Score=39.83  Aligned_cols=86  Identities=15%  Similarity=0.130  Sum_probs=51.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ..+|-|+|+|.+|...++.|.+.. .+++.|. +.... .+..+.                ..+ .+..      +....
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~G-A~VtVva-p~~~~-~l~~l~----------------~~~-~i~~------i~~~~   84 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEG-AAITVVA-PTVSA-EINEWE----------------AKG-QLRV------KRKKV   84 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGC-CCEEEEC-SSCCH-HHHHHH----------------HTT-SCEE------ECSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEC-CCCCH-HHHHHH----------------HcC-CcEE------EECCC
Confidence            468999999999999999999874 5655444 32221 111111                001 0110      10112


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      .++++    .++|+||-||+.......+....+.|+
T Consensus        85 ~~~dL----~~adLVIaAT~d~~~N~~I~~~ak~gi  116 (223)
T 3dfz_A           85 GEEDL----LNVFFIVVATNDQAVNKFVKQHIKNDQ  116 (223)
T ss_dssp             CGGGS----SSCSEEEECCCCTHHHHHHHHHSCTTC
T ss_pred             CHhHh----CCCCEEEECCCCHHHHHHHHHHHhCCC
Confidence            23344    579999999998766666665555665

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=93.15  E-value=0.098  Score=44.57  Aligned_cols=34  Identities=21%  Similarity=0.227  Sum_probs=27.2

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .+.||+|+|+|.+|..+++.+.+.. ++|+. .+++
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~G-~~V~l-~d~~   36 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFHG-FAVTA-YDIN   36 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTT-CEEEE-ECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC-CeEEE-EeCC
Confidence            3569999999999999999999884 66544 5553

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=93.08  E-value=0.042  Score=48.66  Aligned_cols=35  Identities=17%  Similarity=0.158  Sum_probs=28.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..+++|+|+|.+|+.+++.|.....++-+.|.++.
T Consensus       129 ~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~  163 (350)
T 1x7d_A          129 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD  163 (350)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            36899999999999999988654457777888874

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=93.04  E-value=0.073  Score=47.83  Aligned_cols=97  Identities=9%  Similarity=0.045  Sum_probs=50.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC----CC-e-EEEEEeccccC--hhhhhhheeecccCCcccccceeeeCCceEEECCE
Q 024565            3 KVKIGINGFGRIGRLVARVILQR----DD-V-ELVAVNDPFIT--TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK   74 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~----p~-~-el~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~   74 (265)
                      +.||+|+|+|..|..++..|.++    +. + .-|.+..+..+  .+.....+......++|- .      |  +.++ .
T Consensus        34 p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YL-p------g--v~Lp-~  103 (391)
T 4fgw_A           34 PFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYL-P------G--ITLP-D  103 (391)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTB-T------T--CCCC-S
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccC-C------C--CcCC-C
Confidence            57999999999999999999853    21 1 11233333212  111111111011112221 1      1  1111 1


Q ss_pred             EEEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHH
Q 024565           75 PVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL  114 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~  114 (265)
                      .+...  .|.++.   ..++|+||+++|+...++.+.++.
T Consensus       104 ~i~~t--~dl~~a---l~~ad~ii~avPs~~~r~~l~~l~  138 (391)
T 4fgw_A          104 NLVAN--PDLIDS---VKDVDIIVFNIPHQFLPRICSQLK  138 (391)
T ss_dssp             SEEEE--SCHHHH---HTTCSEEEECSCGGGHHHHHHHHT
T ss_pred             CcEEe--CCHHHH---HhcCCEEEEECChhhhHHHHHHhc
Confidence            23332  344332   257899999999998888777654

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=93.00  E-value=0.081  Score=46.07  Aligned_cols=37  Identities=19%  Similarity=0.192  Sum_probs=29.1

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |+++||+|+|+|.+|..++..|..++.+.-+.+.|..
T Consensus         4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3457999999999999999999877645556666653

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=92.99  E-value=0.24  Score=43.48  Aligned_cols=93  Identities=16%  Similarity=0.272  Sum_probs=62.0

Q ss_pred             ccEEEEEcc-ChhHHHHHHH--HHcCCCeEEEEEeccccCh--hhhhhheeecccCCcccccceeeeCCceEEECCE--E
Q 024565            3 KVKIGINGF-GRIGRLVARV--ILQRDDVELVAVNDPFITT--DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK--P   75 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~--L~~~p~~el~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~   75 (265)
                      .+||-|.|+ |..++.++..  +.++++.++++.+++....  ..                          +.++..  .
T Consensus        10 ~tkviV~G~~Gk~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~--------------------------v~~G~~~~G   63 (334)
T 3mwd_B           10 HTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK--------------------------FYWGHKEIL   63 (334)
T ss_dssp             TCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEE--------------------------EEETTEEEE
T ss_pred             CCeEEEECCchHHHHHHHHhcccccCCCceEEEEEcCCCCCccce--------------------------EeccCccCC
Confidence            478999999 9988888877  5677889999999885332  11                          100111  2


Q ss_pred             EEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHh-CCCCeEEE
Q 024565           76 VTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK-GGAKKVII  123 (265)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~-~G~~~vvi  123 (265)
                      +++|  .+.+++.=...++|+++.++|.....+.+.+++. +|++.+|+
T Consensus        64 vpvy--~sv~ea~~~~p~~DlaVi~vp~~~a~~ai~ea~~~~Gv~~vVi  110 (334)
T 3mwd_B           64 IPVF--KNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAI  110 (334)
T ss_dssp             EEEE--SSHHHHHHHCTTCCEEEECCCTTTHHHHHHHHTTSTTCCEEEE
T ss_pred             ceee--CCHHHHhhcCCCCcEEEEecCHHHHHHHHHHHHHHCCCCEEEE
Confidence            5665  3444431000158999999998877666655666 99987776

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=92.63  E-value=0.091  Score=46.73  Aligned_cols=32  Identities=28%  Similarity=0.291  Sum_probs=25.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeE-EEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVE-LVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~e-l~~v~~~   36 (265)
                      -.+|||+|+|.||+.+++.|... +++ +.+ +++
T Consensus       164 g~tvgIIG~G~IG~~vA~~l~~~-G~~~V~~-~d~  196 (364)
T 2j6i_A          164 GKTIATIGAGRIGYRVLERLVPF-NPKELLY-YDY  196 (364)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGG-CCSEEEE-ECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC-CCcEEEE-ECC
Confidence            36899999999999999999876 375 654 444

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=92.44  E-value=0.029  Score=48.93  Aligned_cols=38  Identities=26%  Similarity=0.386  Sum_probs=30.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhh
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDY   42 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~   42 (265)
                      .+++|+|+|.+|+.+++.|.....++-+.|.+++ ....
T Consensus       122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~  159 (313)
T 3hdj_A          122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPE  159 (313)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHH
T ss_pred             cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHH
Confidence            6899999999999999999874237777888876 4433

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=92.26  E-value=0.19  Score=41.00  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=30.0

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCC-CeEEEEEec
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRD-DVELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p-~~el~~v~~   35 (265)
                      |++++|-|.|+ |.+|+.+++.|.+++ +.+++.+..
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r   38 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVR   38 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEES
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            45789999999 999999999999885 688877654

>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A

Probab=92.18  E-value=0.18  Score=45.04  Aligned_cols=108  Identities=16%  Similarity=0.151  Sum_probs=61.4

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCC-eEEEEEeccccChhhhhhheeecccCCcccccceeeeCC---ceEE--E--CC
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD---KTLL--F--GE   73 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~-~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~--~--~g   73 (265)
                      |.+|.|+|. |-||.+.++.+.+||+ |++++++..+ +.+.++...+  .-.+.+-    ...+.   +.|.  +  .+
T Consensus         9 ~k~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aL~ag~-nv~~L~~q~~--~f~p~~v----~v~d~~~~~~L~~~l~~~~   81 (406)
T 1q0q_A            9 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK-NVTRMVEQCL--EFSPRYA----VMDDEASAKLLKTMLQQQG   81 (406)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS-CHHHHHHHHH--HHCCSEE----EESSHHHHHHHHHHHHHTT
T ss_pred             ceeEEEEccCcHHHHHHHHHHHhCCCccEEEEEEcCC-CHHHHHHHHH--HhCCCEE----EEcCHHHHHHHHHHhhcCC
Confidence            579999999 9999999999999987 9999998753 4444332211  1011111    00000   0000  0  01


Q ss_pred             EEEEEEec-CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           74 KPVTVFGV-RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        74 ~~~~~~~~-~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      ..+.++.. ....++. ...++|+|+-+.-...-..-.-.++++|.
T Consensus        82 ~~~~v~~G~~~l~~~a-~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK  126 (406)
T 1q0q_A           82 SRTEVLSGQQAACDMA-ALEDVDQVMAAIVGAAGLLPTLAAIRAGK  126 (406)
T ss_dssp             CCCEEEESHHHHHHHH-TCTTCCEEEECCSSGGGHHHHHHHHHTTC
T ss_pred             CCcEEEeCHHHHHHHh-cCCCCCEEEEccccHhHHHHHHHHHHCCC
Confidence            11122211 1111110 11468999999887777766777889996

>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A

Probab=92.17  E-value=0.16  Score=45.14  Aligned_cols=107  Identities=19%  Similarity=0.144  Sum_probs=60.3

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCC-eEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~-~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |.||.|+|. |-||.+.++.+.+||+ |++++++....+.+.++...+  .-.+.+-    ...+....  ....+.++.
T Consensus        21 mk~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aLaa~g~nv~~L~~q~~--~f~p~~v----~v~d~~~~--~~~~~~v~~   92 (398)
T 2y1e_A           21 RLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRA--QTGVTNI----AVADEHAA--QRVGDIPYH   92 (398)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTTEEEEEEEECSSCHHHHHHHHH--HHCCCCE----EESCHHHH--HHHCCCSEE
T ss_pred             ceEEEEEccCcHHHHHHHHHHHhCCCceEEEEEEecCCCHHHHHHHHH--HcCCCEE----EEcCHHHh--hhcCCEEEe
Confidence            478999999 9999999999999987 999999982224444332211  1011111    00000000  000011111


Q ss_pred             cC-CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           81 VR-NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        81 ~~-~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      .. ...++. ...++|+|+-+.-...-..-.-.++++|.
T Consensus        93 G~~~l~~~a-~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK  130 (398)
T 2y1e_A           93 GSDAATRLV-EQTEADVVLNALVGALGLRPTLAALKTGA  130 (398)
T ss_dssp             STTHHHHHH-HHSCCSEEEECCCSGGGHHHHHHHHHHTC
T ss_pred             cHHHHHHHh-cCCCCCEEEEeCcCHHHHHHHHHHHHCCC
Confidence            00 011110 01458999999887777766677888996

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=92.08  E-value=0.18  Score=48.93  Aligned_cols=32  Identities=16%  Similarity=0.219  Sum_probs=25.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .+||||+|+|.||..++..+.+.. ++|+ +.|.
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG-~~V~-l~D~  345 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKG-TPIL-MKDI  345 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CCEEEEECCChhhHHHHHHHHhCC-CEEE-EEEC
Confidence            468999999999999999998874 5654 4444

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=91.95  E-value=0.84  Score=38.70  Aligned_cols=32  Identities=16%  Similarity=0.130  Sum_probs=25.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .|+.|+|+|-+|+.+++.|.+.. .++. |.++.
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G-~~v~-V~nRt  150 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQG-LQVS-VLNRS  150 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEE-EECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEeCC
Confidence            58999999999999999999886 6654 44443

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=91.91  E-value=0.5  Score=41.02  Aligned_cols=87  Identities=18%  Similarity=0.080  Sum_probs=50.7

Q ss_pred             ccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||.++|.|-+|.. ++++|.++. .+|. ++|.......... +               .+.|         +.++..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G-~~V~-~~D~~~~~~~~~~-L---------------~~~g---------i~v~~g   56 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAG-FEVS-GCDAKMYPPMSTQ-L---------------EALG---------IDVYEG   56 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTT-CEEE-EEESSCCTTHHHH-H---------------HHTT---------CEEEES
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCC-CEEE-EEcCCCCcHHHHH-H---------------HhCC---------CEEECC
Confidence            579999999999996 888888774 6544 4554321111000 0               0112         223222


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      .+++.+.  ..++|+|+-+.+-......+.++.++|+
T Consensus        57 ~~~~~l~--~~~~d~vV~Spgi~~~~p~~~~a~~~gi   91 (326)
T 3eag_A           57 FDAAQLD--EFKADVYVIGNVAKRGMDVVEAILNLGL   91 (326)
T ss_dssp             CCGGGGG--SCCCSEEEECTTCCTTCHHHHHHHHTTC
T ss_pred             CCHHHcC--CCCCCEEEECCCcCCCCHHHHHHHHcCC
Confidence            3444441  0258999987665555556677888998

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=91.89  E-value=0.11  Score=47.93  Aligned_cols=35  Identities=9%  Similarity=0.130  Sum_probs=27.8

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |+|+||||+|+|.||..+++.|.++. ++|. +.+++
T Consensus         2 ~~~~kIgiIGlG~MG~~lA~~L~~~G-~~V~-v~dr~   36 (484)
T 4gwg_A            2 NAQADIALIGLAVMGQNLILNMNDHG-FVVC-AFNRT   36 (484)
T ss_dssp             -CCBSEEEECCSHHHHHHHHHHHHTT-CCEE-EECSS
T ss_pred             CCCCEEEEEChhHHHHHHHHHHHHCC-CEEE-EEeCC
Confidence            56789999999999999999999885 5655 44553

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=91.71  E-value=0.17  Score=45.29  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=25.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ||||+|+|+|.+|..++..|.+..+.+|..+.
T Consensus         2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            47999999999999999999764456766553

>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*

Probab=91.62  E-value=0.17  Score=45.96  Aligned_cols=42  Identities=17%  Similarity=0.254  Sum_probs=33.1

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHc---CCC-eEEEEEeccccChhhh
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQ---RDD-VELVAVNDPFITTDYM   43 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~---~p~-~el~~v~~~~~~~~~~   43 (265)
                      |+|.||.|+|. |-||.+.++.+.+   ||+ +++++++..+ ..+.+
T Consensus        75 ~~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg~-Nv~lL  121 (488)
T 3au8_A           75 KKPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNK-SVNEL  121 (488)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEESS-CHHHH
T ss_pred             hcceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcCC-CHHHH
Confidence            34678999999 9999999999998   555 9999998753 44433

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=91.52  E-value=0.075  Score=49.08  Aligned_cols=29  Identities=24%  Similarity=0.428  Sum_probs=24.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcC-----CCeEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQR-----DDVELVA   32 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~-----p~~el~~   32 (265)
                      +||||||+|.+|..+++.|.+.     ++++++.
T Consensus        55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViV   88 (525)
T 3fr7_A           55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKI   88 (525)
T ss_dssp             SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEE
Confidence            6899999999999999999876     2466543

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=91.38  E-value=0.17  Score=43.53  Aligned_cols=35  Identities=31%  Similarity=0.513  Sum_probs=28.0

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCC-CeEEEEEec
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRD-DVELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p-~~el~~v~~   35 (265)
                      |+.|||-|.|+ |.+|+.+++.|.++. +.+++++..
T Consensus         1 M~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r   37 (336)
T 2hun_A            1 MHSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDK   37 (336)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CCCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence            77789999999 999999999998764 578777653

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=91.22  E-value=0.19  Score=43.58  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=24.3

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ||+|+|+|.+|..++..|...+ +.-+.+.|..
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~-l~el~L~Di~   32 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRG-YDDLLLIART   32 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHT-CSCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCC-CCEEEEEcCC
Confidence            7999999999999998887664 3334555653

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=91.21  E-value=0.23  Score=42.57  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=26.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |.||+|+|+|.+|..++..|.+.. ++|+ +.++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G-~~V~-~~d~   46 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATG-HTVV-LVDQ   46 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CeEE-EEEC
Confidence            568999999999999999998874 6765 4454

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=91.00  E-value=0.21  Score=37.52  Aligned_cols=32  Identities=28%  Similarity=0.560  Sum_probs=26.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      +.+|.|+|+|++|+.+++.|.+.. .+++.+-.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g-~~v~vid~   38 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASD-IPLVVIET   38 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTT-CCEEEEES
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC-CCEEEEEC
Confidence            368999999999999999999764 67776654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=90.99  E-value=0.24  Score=42.92  Aligned_cols=36  Identities=28%  Similarity=0.341  Sum_probs=28.2

Q ss_pred             CC-ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         1 m~-~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |. ++||+|+|+|.+|..++..|.+....+ +.+.|..
T Consensus         1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~-V~l~D~~   37 (317)
T 2ewd_A            1 MIERRKIAVIGSGQIGGNIAYIVGKDNLAD-VVLFDIA   37 (317)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHTCCE-EEEECSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCce-EEEEeCC
Confidence            53 379999999999999999998775336 5666654

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=90.94  E-value=0.19  Score=43.33  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=27.8

Q ss_pred             CC-ccEEEEEcc-ChhHHHHHHHHHcC-CCeEEEEEec
Q 024565            1 MG-KVKIGINGF-GRIGRLVARVILQR-DDVELVAVND   35 (265)
Q Consensus         1 m~-~i~vgI~G~-G~~G~~l~~~L~~~-p~~el~~v~~   35 (265)
                      |+ |++|-|.|+ |.+|+.+++.|.++ ++.+|+++..
T Consensus         1 Ms~m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r   38 (348)
T 1oc2_A            1 MSQFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   38 (348)
T ss_dssp             --CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CCcCcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            65 679999999 99999999999876 3578777754

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=90.86  E-value=0.19  Score=42.41  Aligned_cols=27  Identities=19%  Similarity=0.443  Sum_probs=24.4

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCC
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDD   27 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~   27 (265)
                      |+|+||-|.|+ |++|+.+++.|.++..
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~   31 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAG   31 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCC
Confidence            67899999999 9999999999998753

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=90.55  E-value=0.091  Score=43.74  Aligned_cols=33  Identities=12%  Similarity=0.103  Sum_probs=27.0

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      +++||+|+|+|.+|..+.+.|.+.. .+++.+..
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G-~~V~~~~~   37 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVG-HYVTVLHA   37 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTT-CEEEECSS
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCC-CEEEEecC
Confidence            3589999999999999999999874 66665543

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=90.41  E-value=0.27  Score=42.98  Aligned_cols=35  Identities=23%  Similarity=0.322  Sum_probs=28.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI   38 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~   38 (265)
                      ++||+|+|+|.+|..++..|.....++ +.+.|...
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~-V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELAD-VVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCE-EEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEECCh
Confidence            369999999999999999998776457 66777643

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=90.34  E-value=0.23  Score=39.84  Aligned_cols=30  Identities=23%  Similarity=0.246  Sum_probs=25.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      +..|+|||+|..|..++..|.++. ++++-+
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G-~~V~v~   31 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAG-HQVHLF   31 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTT-CCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC-CCEEEE
Confidence            588999999999999999999884 664433

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=90.34  E-value=0.25  Score=42.78  Aligned_cols=34  Identities=18%  Similarity=0.257  Sum_probs=28.9

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +++||-|.|+ |++|+.+++.|.++. .+|.++...
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   58 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNF   58 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCC
Confidence            4689999999 999999999999875 777777653

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=89.95  E-value=0.25  Score=42.14  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=26.2

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |+++||-|.|+ |.+|+.+++.|.+.. .+++.+
T Consensus         1 M~~~~ilVtGatG~iG~~l~~~L~~~g-~~v~~~   33 (321)
T 1e6u_A            1 MAKQRVFIAGHRGMVGSAIRRQLEQRG-DVELVL   33 (321)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCT-TEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCC-CeEEEE
Confidence            77789999999 999999999999874 565554

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=89.94  E-value=0.26  Score=45.64  Aligned_cols=31  Identities=19%  Similarity=0.370  Sum_probs=25.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .+|+|+|+|.+|+.+++.+.... +++++ +++
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~G-a~Viv-~d~  305 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQG-ARVSV-TEI  305 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEE-ECS
T ss_pred             CEEEEEccCHHHHHHHHHHHHCC-CEEEE-EeC
Confidence            58999999999999999998774 66554 444

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=89.88  E-value=0.27  Score=42.39  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=28.6

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcC-CCeEEEEEecc
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQR-DDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~-p~~el~~v~~~   36 (265)
                      +++||-|.|+ |++|+.+++.|.++ ..++++++...
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~   59 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDAL   59 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecc
Confidence            3589999999 99999999999876 35888777643

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=89.86  E-value=1.1  Score=40.82  Aligned_cols=86  Identities=17%  Similarity=0.236  Sum_probs=50.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      .||.|+|.|..|..+++.|.++. .+|. ++|.... .......+               ...|         +++....
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G-~~V~-~~D~~~~~~~~~~~~L---------------~~~g---------i~~~~g~   63 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLG-AIVT-VNDGKPFDENPTAQSL---------------LEEG---------IKVVCGS   63 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTT-CEEE-EEESSCGGGCHHHHHH---------------HHTT---------CEEEESC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCC-CEEE-EEeCCcccCChHHHHH---------------HhCC---------CEEEECC
Confidence            68999999999999999999885 6554 3444211 00100000               0112         2232223


Q ss_pred             CCCCCCccccc-ccEEEEecCCcccHHhHHHHHhCCC
Q 024565           83 NPEEIPWAETG-AEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        83 ~~~~~~~~~~~-~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      +++++ +  .+ +|+|+-+.+-..+......+.+.|+
T Consensus        64 ~~~~~-~--~~~~d~vv~spgi~~~~p~~~~a~~~gi   97 (451)
T 3lk7_A           64 HPLEL-L--DEDFCYMIKNPGIPYNNPMVKKALEKQI   97 (451)
T ss_dssp             CCGGG-G--GSCEEEEEECTTSCTTSHHHHHHHHTTC
T ss_pred             ChHHh-h--cCCCCEEEECCcCCCCChhHHHHHHCCC
Confidence            34333 1  34 8999998776555556777888998

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=89.36  E-value=0.44  Score=38.21  Aligned_cols=32  Identities=31%  Similarity=0.430  Sum_probs=27.1

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||.|.|+ |.+|+.+++.|.++. .+|.++...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~   33 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRG-HEVLAVVRD   33 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCC-CEEEEEEec
Confidence            47999999 999999999999885 687777643

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=89.35  E-value=0.37  Score=42.43  Aligned_cols=29  Identities=31%  Similarity=0.452  Sum_probs=25.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      ++|||+|+|.||+.+++.|... ++++.+.
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~~  202 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGF-GLAIHYH  202 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTT-TCEEEEE
T ss_pred             CEEEEEEeChhHHHHHHHHHHC-CCEEEEE
Confidence            6899999999999999999876 4787654

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=89.34  E-value=0.38  Score=40.64  Aligned_cols=31  Identities=23%  Similarity=0.397  Sum_probs=26.7

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |||-|-|+ |++|+.+++.|.+.. .+|.++..
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G-~~V~~l~R   32 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARG-HEVTLVSR   32 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEEC
Confidence            58999999 999999999999874 68877764

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=89.08  E-value=0.33  Score=38.62  Aligned_cols=32  Identities=19%  Similarity=0.306  Sum_probs=26.5

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCe-EEEEEe
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDV-ELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~-el~~v~   34 (265)
                      ++||-|.|+ |.+|+.+++.|.++..+ ++..+.
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~   38 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPA   38 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCB
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEe
Confidence            468999999 99999999999998753 665554

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=89.06  E-value=0.38  Score=40.80  Aligned_cols=32  Identities=34%  Similarity=0.481  Sum_probs=27.6

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      ++||-|.|+ |++|+.+++.|.++. .+|.++..
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   39 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASG-EEVTVLDD   39 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CCEEEECC
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCC-CEEEEEec
Confidence            689999999 999999999999885 67776654

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=89.06  E-value=0.42  Score=41.24  Aligned_cols=30  Identities=20%  Similarity=0.433  Sum_probs=24.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .++|||+|+|.||+.+++.|.... +++.+.
T Consensus       124 g~~vgIIG~G~IG~~~A~~l~~~G-~~V~~~  153 (303)
T 1qp8_A          124 GEKVAVLGLGEIGTRVGKILAALG-AQVRGF  153 (303)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTT-CEEEEE
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCC-CEEEEE
Confidence            368999999999999999998764 776543

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=89.00  E-value=1.9  Score=39.39  Aligned_cols=104  Identities=14%  Similarity=0.193  Sum_probs=61.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC--------hhhhhhheeecccC-CcccccceeeeCCceEEECC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT--------TDYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGE   73 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g   73 (265)
                      -.||+|-|+|.+|..+++.|.+. +..+++|.|.+..        ...+..++++-... +...     .... .  +.+
T Consensus       252 g~~vaVqG~GnVG~~~a~~L~~~-GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~-----~~~~-~--~~~  322 (470)
T 2bma_A          252 KQTAVVSGSGNVALYCVQKLLHL-NVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIK-----EYLN-H--SST  322 (470)
T ss_dssp             GCEEEEECSSHHHHHHHHHHHHT-TCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGG-----GGGG-T--CSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHH-----HHHh-h--cCC
Confidence            36899999999999999999887 5899999985311        11222222111100 1111     0000 0  001


Q ss_pred             EEEEEEecCCCCCCCcccccccEEEEecC-CcccHHhHHHHHhCCCCeEEE
Q 024565           74 KPVTVFGVRNPEEIPWAETGAEYVVESTG-VFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~DvV~~at~-~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        ...   .+.+++ |. .++|+.+-|.- ...+.+.+..+.+.++| +|+
T Consensus       323 --a~~---v~~~~~-~~-~~~DI~iPcA~~~~I~~~na~~l~~~~ak-~V~  365 (470)
T 2bma_A          323 --AKY---FPNEKP-WG-VPCTLAFPCATQNDVDLDQAKLLQKNGCI-LVG  365 (470)
T ss_dssp             --CEE---CSSCCT-TS-SCCSEEEECSSTTCBCSHHHHHHHHTTCC-EEE
T ss_pred             --cEE---ecCcCe-ee-cCccEEEeccccCcCCHHHHHHHHhcCcE-EEE
Confidence              112   123455 74 58999998874 45678888888888886 444

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=88.96  E-value=0.44  Score=41.67  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=25.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .++|||+|+|.+|+.+++.|.... +++.+ +++
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~-~d~  181 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFN-MRILY-YSR  181 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CEEEE-ECS
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCC-CEEEE-ECC
Confidence            368999999999999999998764 77654 444

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=88.90  E-value=0.4  Score=41.81  Aligned_cols=31  Identities=32%  Similarity=0.529  Sum_probs=25.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      -++|||+|+|.+|+.+++.|.... +++.+..
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d  185 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFG-VQRFLYT  185 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGT-CCEEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence            368999999999999999998764 6765443

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=88.90  E-value=0.37  Score=42.46  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=27.0

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+++||+|+|+ |++|..++..+.......-+.+.|.
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi   42 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDP   42 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeC
Confidence            56789999998 9999999988877653322345555

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=88.70  E-value=0.41  Score=42.28  Aligned_cols=31  Identities=29%  Similarity=0.459  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      -++|||+|+|.||+.+++.|... ++++.+..
T Consensus       160 g~tvGIIGlG~IG~~vA~~l~~~-G~~V~~~d  190 (352)
T 3gg9_A          160 GQTLGIFGYGKIGQLVAGYGRAF-GMNVLVWG  190 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEC
T ss_pred             CCEEEEEeECHHHHHHHHHHHhC-CCEEEEEC
Confidence            36899999999999999999877 47876543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.63  E-value=0.3  Score=38.27  Aligned_cols=31  Identities=23%  Similarity=0.304  Sum_probs=25.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC-CCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQR-DDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~   34 (265)
                      ..+|.|+|+|.+|..+++.|.+. . .+++.+.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g-~~V~vid   70 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYG-KISLGIE   70 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHC-SCEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccC-CeEEEEE
Confidence            35899999999999999999865 4 5666554

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=88.61  E-value=0.58  Score=37.47  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=24.5

Q ss_pred             cEEEEEc-cChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGING-FGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G-~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |||+|+| +|.+|+.+++.|.++. .++..+.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g-~~V~~~~   31 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLG-HEIVVGS   31 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTT-CEEEEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            4899999 6999999999999875 6765543

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=88.55  E-value=0.43  Score=41.71  Aligned_cols=29  Identities=28%  Similarity=0.630  Sum_probs=24.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.||+.+++.|... ++++.+.
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~  175 (331)
T 1xdw_A          147 CTVGVVGLGRIGRVAAQIFHGM-GATVIGE  175 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCEEEEE
Confidence            6899999999999999999876 4776544

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=88.54  E-value=0.46  Score=41.28  Aligned_cols=31  Identities=29%  Similarity=0.532  Sum_probs=25.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      -.+|||+|+|.||+.+++.|.... +++.+..
T Consensus       146 g~~vgIIG~G~IG~~~A~~l~~~G-~~V~~~d  176 (320)
T 1gdh_A          146 NKTLGIYGFGSIGQALAKRAQGFD-MDIDYFD  176 (320)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence            368999999999999999998764 7766543

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=88.52  E-value=0.35  Score=41.58  Aligned_cols=29  Identities=34%  Similarity=0.563  Sum_probs=25.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.||+.+++.|... ++++.+.
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~-G~~V~~~  151 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAF-GMRVIAY  151 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCEEEEE
T ss_pred             chheeeccCchhHHHHHHHHhh-CcEEEEE
Confidence            6899999999999999999876 4777655

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=88.51  E-value=0.5  Score=40.92  Aligned_cols=29  Identities=34%  Similarity=0.605  Sum_probs=24.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVA   32 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~   32 (265)
                      .++|||+|+|.||+.+++.|.... +++.+
T Consensus       144 g~~vgIIG~G~IG~~~A~~l~~~G-~~V~~  172 (311)
T 2cuk_A          144 GLTLGLVGMGRIGQAVAKRALAFG-MRVVY  172 (311)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CEEEE
T ss_pred             CCEEEEEEECHHHHHHHHHHHHCC-CEEEE
Confidence            368999999999999999998774 77654

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=88.50  E-value=0.39  Score=43.10  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=23.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |||+|+|+|++|..++..|.+  +.+++.+
T Consensus         1 MkI~VIG~G~vG~~~A~~La~--G~~V~~~   28 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL--QNEVTIV   28 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT--TSEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC--CCEEEEE
Confidence            489999999999999999987  4776655

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=88.44  E-value=0.57  Score=40.78  Aligned_cols=81  Identities=12%  Similarity=0.274  Sum_probs=48.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN   83 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   83 (265)
                      -+|.|+|+|.+|...++++.... .+++++.......+. +  .                +-|       .+ .++  .+
T Consensus       178 ~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~-~--~----------------~lG-------a~-~v~--~~  227 (348)
T 3two_A          178 TKVGVAGFGGLGSMAVKYAVAMG-AEVSVFARNEHKKQD-A--L----------------SMG-------VK-HFY--TD  227 (348)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT-CEEEEECSSSTTHHH-H--H----------------HTT-------CS-EEE--SS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHH-H--H----------------hcC-------CC-eec--CC
Confidence            47999999999999999888764 687776543222221 1  1                011       00 112  23


Q ss_pred             CCCCCcccccccEEEEecCCcccHHhHHHHHhCC
Q 024565           84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGG  117 (265)
Q Consensus        84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G  117 (265)
                      ++.+   ..++|+||+|++.....+.+-.+++.|
T Consensus       228 ~~~~---~~~~D~vid~~g~~~~~~~~~~~l~~~  258 (348)
T 3two_A          228 PKQC---KEELDFIISTIPTHYDLKDYLKLLTYN  258 (348)
T ss_dssp             GGGC---CSCEEEEEECCCSCCCHHHHHTTEEEE
T ss_pred             HHHH---hcCCCEEEECCCcHHHHHHHHHHHhcC
Confidence            3333   238999999999875555544444444

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=88.40  E-value=0.44  Score=41.66  Aligned_cols=29  Identities=21%  Similarity=0.470  Sum_probs=24.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.||+.+++.|... ++++.+.
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~  174 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGF-GAKVIAY  174 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCEEEEE
Confidence            6899999999999999999876 4776544

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=88.34  E-value=0.43  Score=41.54  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=28.1

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcC-CCeEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQR-DDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~-p~~el~~v~~   35 (265)
                      +++|-|.|+ |++|+.+++.|.+. .+.+|+++..
T Consensus        10 ~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r   44 (362)
T 3sxp_A           10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDK   44 (362)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence            579999999 99999999999984 3688887764

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=88.29  E-value=0.46  Score=41.83  Aligned_cols=30  Identities=27%  Similarity=0.565  Sum_probs=25.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .+|||+|+|.||+.+++.|... ++++.+..
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~-G~~V~~~d  178 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAM-GAKVIAYD  178 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEC
T ss_pred             CeEEEEecCHHHHHHHHHHhhC-CCEEEEEC
Confidence            6899999999999999999877 47766553

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=88.19  E-value=0.54  Score=40.60  Aligned_cols=30  Identities=37%  Similarity=0.573  Sum_probs=25.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      -.+|||+|+|.||+.+++.|.... +++.+.
T Consensus       142 g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~  171 (307)
T 1wwk_A          142 GKTIGIIGFGRIGYQVAKIANALG-MNILLY  171 (307)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CceEEEEccCHHHHHHHHHHHHCC-CEEEEE
Confidence            368999999999999999998774 776544

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=88.18  E-value=0.5  Score=41.34  Aligned_cols=32  Identities=34%  Similarity=0.513  Sum_probs=25.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      -++|||+|+|.||+.+++.|.... +++.+ +++
T Consensus       146 g~~vgIIG~G~iG~~vA~~l~~~G-~~V~~-~d~  177 (333)
T 2d0i_A          146 GKKVGILGMGAIGKAIARRLIPFG-VKLYY-WSR  177 (333)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGT-CEEEE-ECS
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCC-CEEEE-ECC
Confidence            368999999999999999998764 77654 444

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=88.17  E-value=0.5  Score=41.57  Aligned_cols=31  Identities=29%  Similarity=0.389  Sum_probs=25.3

Q ss_pred             cEEEEEccChhHHHHHHHHH-cCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVIL-QRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~-~~p~~el~~v~~~   36 (265)
                      ++|||+|+|.||+.+++.+. .. ++++.+ +++
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~-G~~V~~-~d~  195 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGL-GMKLVY-YDV  195 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CCEEEE-ECS
T ss_pred             CEEEEEEECHHHHHHHHHHHHhc-CCEEEE-ECC
Confidence            68999999999999999998 66 477654 444

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=88.15  E-value=0.39  Score=42.01  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      -++|||+|+|.||+.+++.|... ++++.+. ++
T Consensus       145 g~tvGIIG~G~IG~~vA~~l~~~-G~~V~~~-d~  176 (330)
T 4e5n_A          145 NATVGFLGMGAIGLAMADRLQGW-GATLQYH-EA  176 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHTTTS-CCEEEEE-CS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHC-CCEEEEE-CC
Confidence            36899999999999999998866 4776554 44

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=88.13  E-value=0.51  Score=41.37  Aligned_cols=31  Identities=32%  Similarity=0.516  Sum_probs=25.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      -.+|||+|+|.||+.+++.|... ++++.+..
T Consensus       165 g~tvgIIGlG~IG~~vA~~l~~~-G~~V~~~d  195 (335)
T 2g76_A          165 GKTLGILGLGRIGREVATRMQSF-GMKTIGYD  195 (335)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-TCEEEEEC
T ss_pred             cCEEEEEeECHHHHHHHHHHHHC-CCEEEEEC
Confidence            36899999999999999999876 47876543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=88.10  E-value=0.41  Score=42.98  Aligned_cols=32  Identities=25%  Similarity=0.516  Sum_probs=25.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCe-EEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~-el~~v~~~   36 (265)
                      -.+|+|+|+|.+|+.+++.|.... + +++ ++++
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G-~~~V~-v~~r  199 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRG-VRAVL-VANR  199 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHC-CSEEE-EECS
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCC-CCEEE-EEeC
Confidence            358999999999999999998764 6 554 4444

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=88.05  E-value=0.56  Score=40.64  Aligned_cols=30  Identities=37%  Similarity=0.552  Sum_probs=25.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      -.+|||+|+|.||+.+++.|.... +++.+.
T Consensus       142 g~~vgIIG~G~IG~~~A~~l~~~G-~~V~~~  171 (313)
T 2ekl_A          142 GKTIGIVGFGRIGTKVGIIANAMG-MKVLAY  171 (313)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCC-CEEEEE
Confidence            368999999999999999998774 776544

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=87.83  E-value=0.48  Score=41.04  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=28.1

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      ++++|-|.|+ |.+|+.+++.|.+.. .+|+++..
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   59 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDN   59 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence            4689999999 999999999999874 67777654

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=87.83  E-value=0.61  Score=41.05  Aligned_cols=32  Identities=31%  Similarity=0.482  Sum_probs=26.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      -++|||+|+|.||+.+++.|... ++++.+ +++
T Consensus       168 g~tvGIIG~G~IG~~vA~~l~~~-G~~V~~-~d~  199 (347)
T 1mx3_A          168 GETLGIIGLGRVGQAVALRAKAF-GFNVLF-YDP  199 (347)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-TCEEEE-ECT
T ss_pred             CCEEEEEeECHHHHHHHHHHHHC-CCEEEE-ECC
Confidence            36899999999999999999876 477655 444

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=87.80  E-value=0.49  Score=41.45  Aligned_cols=29  Identities=34%  Similarity=0.448  Sum_probs=24.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVA   32 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~   32 (265)
                      .++|||+|+|.||+.+++.|.... +++.+
T Consensus       164 g~~vgIIG~G~iG~~vA~~l~~~G-~~V~~  192 (333)
T 3ba1_A          164 GKRVGIIGLGRIGLAVAERAEAFD-CPISY  192 (333)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTT-CCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEE
Confidence            368999999999999999998764 66544

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=87.74  E-value=0.52  Score=41.22  Aligned_cols=29  Identities=17%  Similarity=0.440  Sum_probs=24.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.||+.+++.|... ++++.+.
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~  175 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGF-GAKVITY  175 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHHC-CCEEEEE
Confidence            6899999999999999999876 4776544

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=87.60  E-value=0.51  Score=40.91  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=23.2

Q ss_pred             CC-ccEEEEEcc-ChhHHHHHHHHHcCCC
Q 024565            1 MG-KVKIGINGF-GRIGRLVARVILQRDD   27 (265)
Q Consensus         1 m~-~i~vgI~G~-G~~G~~l~~~L~~~p~   27 (265)
                      |+ ++||.|.|+ |.+|..+++.|.+.+.
T Consensus         1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~   29 (327)
T 1y7t_A            1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEM   29 (327)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCCC
Confidence            54 479999999 9999999999988754

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=87.54  E-value=0.49  Score=42.03  Aligned_cols=29  Identities=31%  Similarity=0.580  Sum_probs=24.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.||+.+++.|... ++++.+.
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~f-G~~V~~~  205 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGF-RARIRVF  205 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTS-CCEEEEE
T ss_pred             CEEEEecCCcccHHHHHhhhhC-CCEEEEE
Confidence            5899999999999999998766 4776654

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=87.53  E-value=0.53  Score=42.01  Aligned_cols=29  Identities=21%  Similarity=0.361  Sum_probs=25.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.||+.+++.|... ++++.+.
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~-G~~V~~~  148 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEAL-GIRTLLC  148 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEEeECHHHHHHHHHHHHC-CCEEEEE
Confidence            6899999999999999999877 4776654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=87.48  E-value=0.54  Score=43.04  Aligned_cols=31  Identities=26%  Similarity=0.446  Sum_probs=26.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .|||-|+|+|.+|..+++.|... +.+++.|-
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~-~~~v~vId   33 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGE-NNDITIVD   33 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCST-TEEEEEEE
T ss_pred             cCEEEEECCCHHHHHHHHHHHHC-CCCEEEEE
Confidence            58999999999999999999866 46776553

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=87.33  E-value=0.5  Score=40.83  Aligned_cols=35  Identities=11%  Similarity=0.003  Sum_probs=28.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .++|+|+|+|.+|+.+++.|.+..+++-+.+.++.
T Consensus       135 ~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~  169 (312)
T 2i99_A          135 SEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRT  169 (312)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSS
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            46899999999999999999876346566777764

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=87.30  E-value=0.52  Score=41.10  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=28.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||+|+|+|.+|..++..|..++.+.-+.+.|.
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di   42 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI   42 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC
Confidence            5899999999999999999988775655666666

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=87.14  E-value=0.58  Score=41.78  Aligned_cols=30  Identities=17%  Similarity=0.340  Sum_probs=25.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      -++|||+|+|.||+.+++.|... ++++.+.
T Consensus       116 g~tvGIIGlG~IG~~vA~~l~~~-G~~V~~~  145 (380)
T 2o4c_A          116 ERTYGVVGAGQVGGRLVEVLRGL-GWKVLVC  145 (380)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHC-CCEEEEE
Confidence            36899999999999999999876 4776543

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=87.07  E-value=0.67  Score=37.60  Aligned_cols=35  Identities=17%  Similarity=0.077  Sum_probs=30.0

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ++.|+.|+|+|-.|+++++.|.+ .++++++..|..
T Consensus        11 ~~k~v~IiGAGg~g~~v~~~l~~-~~~~~vgfiDd~   45 (220)
T 4ea9_A           11 AIGGVVIIGGGGHAKVVIESLRA-CGETVAAIVDAD   45 (220)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHH-TTCCEEEEECSC
T ss_pred             CCCCEEEEcCCHHHHHHHHHHHh-CCCEEEEEEeCC
Confidence            45789999999999999999987 468999988863

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=87.03  E-value=0.42  Score=43.47  Aligned_cols=35  Identities=11%  Similarity=0.142  Sum_probs=26.8

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcC-CCeEEEEEec
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQR-DDVELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~   35 (265)
                      |++++|.|||+|..|...+..|.+. |+.+++-+-.
T Consensus         1 M~~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~   36 (472)
T 3iwa_A            1 MSLKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQ   36 (472)
T ss_dssp             ---CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEEC
Confidence            7778999999999999999999875 5678766643

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=86.94  E-value=0.5  Score=42.65  Aligned_cols=34  Identities=21%  Similarity=0.182  Sum_probs=28.1

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcC-CCeEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQR-DDVELVAVN   34 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~   34 (265)
                      |++++|.|||+|..|...+..|.+. ++.+++-+-
T Consensus         1 M~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie   35 (449)
T 3kd9_A            1 MSLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFE   35 (449)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEE
Confidence            7789999999999999999999875 567776664

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=86.94  E-value=0.59  Score=42.98  Aligned_cols=30  Identities=13%  Similarity=0.334  Sum_probs=25.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .|||+|+|+|++|..++..|.+.. .+|+.+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G-~~V~~~   37 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIG-HDVFCL   37 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCC-CEEEEE
Confidence            489999999999999999999874 566555

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=86.87  E-value=0.56  Score=40.84  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=22.7

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCC
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDD   27 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~   27 (265)
                      +++||+|+|+ |.+|..++..|..++.
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~   30 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDM   30 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC
Confidence            3589999999 9999999999988764

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=86.75  E-value=0.71  Score=39.54  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=28.0

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||-|.|+ |++|+.+++.|.++++.+|+++...
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   34 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG   34 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            47999999 9999999999998866788777643

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=86.66  E-value=0.73  Score=40.09  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=25.7

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||+|+|+ |++|..++..|.+.+.+.-+.+.|.
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di   42 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDV   42 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEES
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeC
Confidence            579999996 9999999999987754433344554

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=86.66  E-value=0.55  Score=41.86  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=22.6

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCe
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDV   28 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~   28 (265)
                      ++||+|+|+ |.+|..++..|...+-+
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~   58 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVF   58 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcC
Confidence            589999996 99999999999887643

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=86.63  E-value=0.6  Score=40.88  Aligned_cols=29  Identities=31%  Similarity=0.466  Sum_probs=24.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .++||+|+|.||+++++.+... ++++.+.
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~f-g~~v~~~  170 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAF-GMKVLCY  170 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             cEEEEECcchHHHHHHHhhccc-Cceeeec
Confidence            5899999999999999999877 4777654

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=86.42  E-value=0.76  Score=41.56  Aligned_cols=34  Identities=29%  Similarity=0.536  Sum_probs=29.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHc-CCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~-~p~~el~~v~~~~   37 (265)
                      -.+|+|+|+|.+|+.+++.|.. . +++++++.++.
T Consensus       212 gktvgI~G~G~VG~~vA~~l~~~~-G~kVv~~sD~~  246 (419)
T 1gtm_A          212 GKTIAIQGYGNAGYYLAKIMSEDF-GMKVVAVSDSK  246 (419)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CCEEEEEECSS
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhc-CCEEEEEeCCC
Confidence            3689999999999999999988 6 69999998763

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=86.32  E-value=0.61  Score=41.95  Aligned_cols=28  Identities=25%  Similarity=0.398  Sum_probs=24.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVA   32 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~   32 (265)
                      +++||+|+|.||+.+++.+... ++++.+
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~-G~~V~~  173 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESL-GMYVYF  173 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEE
T ss_pred             CEEEEEeECHHHHHHHHHHHHC-CCEEEE
Confidence            6899999999999999999876 477654

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=86.28  E-value=0.74  Score=39.34  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=27.4

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |+.++|-|.|+ |.+|+.+++.|.++. .+|+++..
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r   35 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKG-YEVYGADR   35 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEC
Confidence            66689999999 999999999999874 67776654

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=86.26  E-value=0.83  Score=39.23  Aligned_cols=33  Identities=30%  Similarity=0.584  Sum_probs=27.5

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      +|++|-|.|+ |.+|+.+++.|.+.. .+|+++..
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r   53 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERG-DKVVGIDN   53 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEEC
Confidence            4689999999 999999999999875 67777754

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=86.18  E-value=0.27  Score=41.29  Aligned_cols=31  Identities=26%  Similarity=0.266  Sum_probs=24.6

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+.|+|+|.+|+.+++.|.+.. ++-+.|+++
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G-~~~I~v~nR  140 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMG-VKDIWVVNR  140 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT-CCCEEEEES
T ss_pred             eEEEECcHHHHHHHHHHHHHcC-CCEEEEEeC
Confidence            7999999999999999999874 533445555

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=86.18  E-value=0.58  Score=42.67  Aligned_cols=30  Identities=17%  Similarity=0.215  Sum_probs=25.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |.+|+|+|.||+|..++-.+++. +++++++
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~-G~~V~g~   50 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALL-GHRVVGY   50 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-TCEEEEE
T ss_pred             CCEEEEEccCHHHHHHHHHHHhC-CCcEEEE
Confidence            57999999999999999888866 3677765

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=86.15  E-value=3.1  Score=37.90  Aligned_cols=86  Identities=15%  Similarity=0.088  Sum_probs=52.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE-ec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF-GV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~   81 (265)
                      -++|-|+|+|.+|...++.|.+.. .+++.+. +.... .+..+.                ..+ .+       ... ..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~g-a~V~vi~-~~~~~-~~~~l~----------------~~~-~i-------~~~~~~   64 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAG-ARLTVNA-LTFIP-QFTVWA----------------NEG-ML-------TLVEGP   64 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-BEEEEEE-SSCCH-HHHHHH----------------TTT-SC-------EEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCc-CEEEEEc-CCCCH-HHHHHH----------------hcC-CE-------EEEECC
Confidence            468999999999999999999885 6665554 32222 111110                001 01       111 11


Q ss_pred             CCCCCCCcccccccEEEEecCCc-ccHHhHHHHHhCCCC
Q 024565           82 RNPEEIPWAETGAEYVVESTGVF-TDKDKAAAHLKGGAK  119 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~-~~~~~~~~~~~~G~~  119 (265)
                      .+++++    .++|+||-||+.. ........+.+.|+.
T Consensus        65 ~~~~~l----~~~~lVi~at~~~~~n~~i~~~a~~~~i~   99 (457)
T 1pjq_A           65 FDETLL----DSCWLAIAATDDDTVNQRVSDAAESRRIF   99 (457)
T ss_dssp             CCGGGG----TTCSEEEECCSCHHHHHHHHHHHHHTTCE
T ss_pred             CCcccc----CCccEEEEcCCCHHHHHHHHHHHHHcCCE
Confidence            122333    4789999999876 466667778888873

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=86.13  E-value=0.78  Score=42.03  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=26.5

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .+.||+|+|+|.||..++..+++. +++|+.. |.
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~a-G~~V~l~-D~   85 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLA-GIETFLV-VR   85 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEE-CS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHC-CCeEEEE-EC
Confidence            357999999999999999999987 4666544 44

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=86.09  E-value=0.76  Score=40.28  Aligned_cols=33  Identities=15%  Similarity=0.271  Sum_probs=27.3

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      +++|-|.|+ |.+|+.+++.|.++...+|.++..
T Consensus        32 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r   65 (377)
T 2q1s_A           32 NTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDN   65 (377)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCceEEEEEC
Confidence            578999999 999999999999874367776643

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=86.06  E-value=0.73  Score=40.31  Aligned_cols=29  Identities=21%  Similarity=0.352  Sum_probs=24.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |||.|||+|..|..++..|.++. ++++-+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G-~~v~v~   30 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHG-IKVTIY   30 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC-CCEEEE
Confidence            79999999999999999999884 775544

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=85.59  E-value=0.61  Score=39.87  Aligned_cols=32  Identities=19%  Similarity=0.270  Sum_probs=27.1

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |++.+|.|||+|..|..++..|.++ +++++-+
T Consensus         1 m~~~~vvIIG~G~aGl~~A~~l~~~-g~~v~vi   32 (357)
T 4a9w_A            1 MDSVDVVVIGGGQSGLSAGYFLRRS-GLSYVIL   32 (357)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHS-SCCEEEE
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC-CCCEEEE
Confidence            7778999999999999999999987 4665544

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=85.54  E-value=0.84  Score=40.90  Aligned_cols=30  Identities=33%  Similarity=0.410  Sum_probs=25.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      -++|||+|+|.||+.+++.|.... +++.+.
T Consensus       191 gktvGIIGlG~IG~~vA~~l~a~G-~~V~~~  220 (393)
T 2nac_A          191 AMHVGTVAAGRIGLAVLRRLAPFD-VHLHYT  220 (393)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGT-CEEEEE
T ss_pred             CCEEEEEeECHHHHHHHHHHHhCC-CEEEEE
Confidence            368999999999999999998764 776544

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=85.50  E-value=0.86  Score=38.81  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=26.6

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |+||-|.|+ |.+|+.+++.|.++. .+|+++..
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r   33 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEG-LSVVVVDN   33 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeC
Confidence            378999999 999999999999874 67777653

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=85.48  E-value=2.4  Score=38.56  Aligned_cols=103  Identities=17%  Similarity=0.281  Sum_probs=60.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh---h------hhhhheeecccC-CcccccceeeeCCceEEEC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT---D------YMTYMFKYDSVH-GQWKHHELKVKDDKTLLFG   72 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~---~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~   72 (265)
                      -.+|+|-|+|.+|..+++.|.+. +..+++|.|.....   +      .+..++++-... +.+.     ...+ .+  +
T Consensus       230 g~~v~VqG~GnVG~~~a~~L~~~-GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~-----~y~~-~~--~  300 (449)
T 1bgv_A          230 GKTVALAGFGNVAWGAAKKLAEL-GAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQ-----DYAD-KF--G  300 (449)
T ss_dssp             TCEEEECCSSHHHHHHHHHHHHH-TCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTH-----HHHH-HH--T
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChh-----hccc-cc--C
Confidence            46899999999999999999876 58999998853110   0      111121110000 1111     0000 00  0


Q ss_pred             CEEEEEEecCCCCCCCcccccccEEEEec-CCcccHHhHHHHHhCCCCeEEE
Q 024565           73 EKPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        73 g~~~~~~~~~~~~~~~~~~~~~DvV~~at-~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .   ..+.   .+++ |. .++|+.+-|. +...+.+.+..+...||| +|+
T Consensus       301 a---~~i~---~~e~-~~-~~~Dil~P~A~~~~I~~~na~~l~a~g~k-iV~  343 (449)
T 1bgv_A          301 V---QFFP---GEKP-WG-QKVDIIMPCATQNDVDLEQAKKIVANNVK-YYI  343 (449)
T ss_dssp             C---EEEE---TCCG-GG-SCCSEEECCSCTTCBCHHHHHHHHHTTCC-EEE
T ss_pred             C---EEeC---chhh-hc-CCcceeeccccccccchhhHHHHHhcCCe-EEE
Confidence            1   1211   3345 74 5899999876 455688889888888996 444

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=85.36  E-value=0.74  Score=41.60  Aligned_cols=29  Identities=24%  Similarity=0.409  Sum_probs=24.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.||+.+++.+... ++++.+.
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~y  185 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESL-GMTVRYY  185 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC-CCEEEEE
Confidence            5899999999999999999877 4776543

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=85.16  E-value=1.6  Score=37.03  Aligned_cols=29  Identities=17%  Similarity=0.281  Sum_probs=22.9

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .++.|+|+ +.+|+.++++|.+. +..++..
T Consensus       151 k~vvVvG~s~iVG~plA~lL~~~-gAtVtv~  180 (276)
T 3ngx_A          151 NTVTIVNRSPVVGRPLSMMLLNR-NYTVSVC  180 (276)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEEcCChHHHHHHHHHHHHC-CCeEEEE
Confidence            58999999 57999999999887 4665433

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=85.11  E-value=0.71  Score=41.50  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=27.7

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcC-CCeEEEEEec
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQR-DDVELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~   35 (265)
                      |+ .||.|+|+|+.|...++.|.+. ++++++-|..
T Consensus         1 M~-K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~   35 (430)
T 3hyw_A            1 MA-KHVVVIGGGVGGIATAYNLRNLMPDLKITLISD   35 (430)
T ss_dssp             -C-CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECS
T ss_pred             CC-CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcC
Confidence            54 5899999999999999999864 6788877654

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=85.06  E-value=0.84  Score=39.48  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=26.7

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |||+|+|+ |++|..++..|...+.+.-+.+.|..
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~   35 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCC
Confidence            48999999 99999999999977644445556653

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=85.05  E-value=0.76  Score=38.95  Aligned_cols=31  Identities=26%  Similarity=0.383  Sum_probs=25.2

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++|-|.|+ |++|+.+++.|.++.  +++.+...
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~~~   33 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESN--EIVVIDNL   33 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTS--CEEEECCC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCC--CEEEEEcC
Confidence            68999999 999999999999886  55555543

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=85.04  E-value=3  Score=36.63  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=26.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ..||.|+|+|-+|.+++..|.... +.-+.|.|.
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aG-vg~i~lvD~  150 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSG-IGEIILIDN  150 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC-CCeEEEECC
Confidence            468999999999999999999764 544555554

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=84.81  E-value=0.78  Score=39.38  Aligned_cols=34  Identities=18%  Similarity=0.419  Sum_probs=27.2

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCC------eEEEEEe
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDD------VELVAVN   34 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~------~el~~v~   34 (265)
                      |++++|-|.|+ |.+|+.+++.|.++..      .+|+.+.
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~   52 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLID   52 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEE
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEE
Confidence            45679999999 9999999999988752      5666554

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=84.68  E-value=0.68  Score=39.08  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=27.4

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcC-CCeEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQR-DDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~-p~~el~~v~~   35 (265)
                      ++||-|.|+ |.+|+.+++.|.++ ++.+++++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r   36 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDI   36 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEES
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            478999999 99999999999876 4567776654

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=84.59  E-value=0.84  Score=39.61  Aligned_cols=35  Identities=17%  Similarity=0.128  Sum_probs=29.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..+++|+|+|.+|+.+++.|.+...++.+.|.++.
T Consensus       125 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~  159 (322)
T 1omo_A          125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVR  159 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSS
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCC
Confidence            36899999999999999999875458888888875

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=84.57  E-value=0.95  Score=34.97  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=25.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |.+|.|+|+|.+|.+++..|.+.. .+++-+-
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~g-~~v~lie   31 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARAG-LKVLVLD   31 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CcEEEEe
Confidence            379999999999999999999873 5655554

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=84.48  E-value=1.2  Score=39.03  Aligned_cols=32  Identities=28%  Similarity=0.356  Sum_probs=27.4

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |++|-|.|+ |.+|+.+++.|.+.. .+|+++..
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   61 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEG-HYVIASDW   61 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEEC
Confidence            579999999 999999999999874 67777654

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=84.44  E-value=3.3  Score=37.69  Aligned_cols=101  Identities=12%  Similarity=0.229  Sum_probs=59.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh--------hhhhhheee-cccCCcccccceeeeCCceEEECC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT--------DYMTYMFKY-DSVHGQWKHHELKVKDDKTLLFGE   73 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g   73 (265)
                      -.||+|=|+|.+|..+++.|.+. +..++++.|.....        ..+..+.+. .+..+... .. ....|       
T Consensus       235 Gk~vaVQG~GnVG~~aa~~L~e~-GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~-~~-~~~~g-------  304 (450)
T 4fcc_A          235 GMRVSVSGSGNVAQYAIEKAMEF-GARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVA-DY-AKEFG-------  304 (450)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHH-HH-HHHHT-------
T ss_pred             CCEEEEeCCChHHHHHHHHHHhc-CCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccc-cc-cccCC-------
Confidence            36899999999999999999887 58999988764211        111111110 00000000 00 00001       


Q ss_pred             EEEEEEecCCCCCCCcccccccEEEEec-CCcccHHhHHHHHhCCCCe
Q 024565           74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKK  120 (265)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~DvV~~at-~~~~~~~~~~~~~~~G~~~  120 (265)
                        ...+   +.+++ |. .++|+.+=|. +...+.+.++.+...|||.
T Consensus       305 --~~~~---~~~~i-~~-~~~DI~iPcAl~~~I~~~~a~~L~a~g~k~  345 (450)
T 4fcc_A          305 --LVYL---EGQQP-WS-VPVDIALPCATQNELDVDAAHQLIANGVKA  345 (450)
T ss_dssp             --CEEE---ETCCG-GG-SCCSEEEECSCTTCBCHHHHHHHHHTTCCE
T ss_pred             --cEEe---cCccc-cc-CCccEEeeccccccccHHHHHHHHhcCceE
Confidence              1121   24455 65 5899988875 4556888899988889863

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=84.43  E-value=0.63  Score=40.61  Aligned_cols=30  Identities=23%  Similarity=0.373  Sum_probs=25.8

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |||-|.|+ |.+|+.+++.|.+++.++++.+
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~   31 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEV   31 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence            48999999 9999999999998876576654

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=84.34  E-value=0.9  Score=39.26  Aligned_cols=34  Identities=9%  Similarity=0.074  Sum_probs=28.2

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +.++|-|.|+ |.+|+.+++.|.++. .+|+++...
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   42 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLT   42 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCC-CeEEEEeCC
Confidence            3579999999 999999999999875 677776543

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=84.58  E-value=0.2  Score=40.49  Aligned_cols=29  Identities=24%  Similarity=0.302  Sum_probs=23.6

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELV   31 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~   31 (265)
                      +.+||+|+|+|.+|..+++.|.+.. .++.
T Consensus        18 ~~~~I~iIG~G~mG~~la~~L~~~G-~~V~   46 (201)
T 2yjz_A           18 KQGVVCIFGTGDFGKSLGLKMLQCG-YSVV   46 (201)
Confidence            3578999999999999999998763 4544

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=84.09  E-value=1.1  Score=37.89  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=26.4

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .++|-|.|+ |.+|+.+++.|.++. .+|+++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~   33 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCG   33 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEc
Confidence            478999999 999999999999875 6776664

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=83.84  E-value=3.5  Score=35.39  Aligned_cols=27  Identities=15%  Similarity=0.294  Sum_probs=21.8

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELV   31 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~   31 (265)
                      .++.|+|+ |.+|+.++++|.+. +.+++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~-gAtVt  193 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKE-NATVT  193 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHT-TCEEE
T ss_pred             CEEEEECCCchHHHHHHHHHHHC-CCeEE
Confidence            58999999 56899999999887 46644

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=83.77  E-value=1.1  Score=38.65  Aligned_cols=34  Identities=26%  Similarity=0.273  Sum_probs=27.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +||+|+|+|.+|..++..|..++-+.-+.+.|..
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   34 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLD   34 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            5899999999999999999887655556666663

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=83.73  E-value=0.85  Score=37.93  Aligned_cols=33  Identities=18%  Similarity=0.325  Sum_probs=27.1

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |+|++|-|-|+ |.+|+.+++.|.++. .+|+.+.
T Consensus         1 m~~k~vlVTGasg~IG~~la~~L~~~G-~~V~~~~   34 (267)
T 3rft_A            1 MAMKRLLVTGAAGQLGRVMRERLAPMA-EILRLAD   34 (267)
T ss_dssp             CCEEEEEEESTTSHHHHHHHHHTGGGE-EEEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcC-CEEEEEe
Confidence            77788999999 999999999999874 5655443

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=83.70  E-value=0.55  Score=40.00  Aligned_cols=32  Identities=19%  Similarity=0.130  Sum_probs=24.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .++.|+|+|-+|+.+++.|.+.. ++-+.|+++
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G-~~~v~v~~R  149 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIV-RPTLTVANR  149 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTC-CSCCEEECS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEeC
Confidence            57999999999999999999774 532344555

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=83.54  E-value=1.2  Score=39.35  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=26.6

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |+.++|.|||+|..|...+..|.++ +.+++-+-
T Consensus         1 m~~~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E   33 (384)
T 2bi7_A            1 MKSKKILIVGAGFSGAVIGRQLAEK-GHQVHIID   33 (384)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHTT-TCEEEEEE
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEE
Confidence            7678999999999999999999887 36665554

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=83.49  E-value=1  Score=39.00  Aligned_cols=33  Identities=18%  Similarity=0.322  Sum_probs=26.0

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      .++|-|.|+ |.+|+.+++.|.+....+++++..
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r   79 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDN   79 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence            368999999 999999999999875366666654

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=83.37  E-value=1.1  Score=38.27  Aligned_cols=30  Identities=27%  Similarity=0.463  Sum_probs=26.0

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ++|-|.|+ |.+|+.+++.|.+.. .+|+++.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~   32 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQG-IDLIVFD   32 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCC-CEEEEEe
Confidence            68999999 999999999999874 6777765

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=83.25  E-value=1.5  Score=37.31  Aligned_cols=33  Identities=12%  Similarity=0.183  Sum_probs=27.5

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      +.++|-|.|+ |.+|+.+++.|.++. .+|+++..
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r   43 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTAR   43 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence            3478999999 999999999999874 67776654

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=83.21  E-value=0.9  Score=36.18  Aligned_cols=35  Identities=20%  Similarity=0.068  Sum_probs=24.3

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |+|.|+.|+|+|--|+++++.+.+.. .++++..|.
T Consensus         1 ~~m~~~~I~Gagg~gk~v~~~~~~~~-~~v~~f~Dd   35 (194)
T 3bfp_A            1 ARTEKIYIYGASGHGLVCEDVAKNMG-YKECIFLDD   35 (194)
T ss_dssp             CCCSEEEEEC--CHHHHHHHHHHHHT-CSEEEEEC-
T ss_pred             CCCccEEEEeCCHHHHHHHHHHHhCC-CeEEEEEeC
Confidence            45678999999778999999886543 666666553

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=83.15  E-value=1  Score=38.86  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=26.0

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCe-EEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDV-ELVAV   33 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~-el~~v   33 (265)
                      |++++|.|||+|..|..++..|.+.. . +++-+
T Consensus         2 m~~~~vvIIGaG~aGl~aA~~l~~~g-~~~v~li   34 (369)
T 3d1c_A            2 MQHHKVAIIGAGAAGIGMAITLKDFG-ITDVIIL   34 (369)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTT-CCCEEEE
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHcC-CCcEEEE
Confidence            66689999999999999999998764 4 55444

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=83.09  E-value=1.3  Score=41.20  Aligned_cols=33  Identities=42%  Similarity=0.707  Sum_probs=26.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .++|||+|+|.||+.+++.|... ++++.+. ++.
T Consensus       142 g~~vgIIG~G~IG~~vA~~l~~~-G~~V~~~-d~~  174 (529)
T 1ygy_A          142 GKTVGVVGLGRIGQLVAQRIAAF-GAYVVAY-DPY  174 (529)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-TCEEEEE-CTT
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC-CCEEEEE-CCC
Confidence            46899999999999999999877 4776544 443

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=83.08  E-value=2.4  Score=38.98  Aligned_cols=83  Identities=19%  Similarity=0.208  Sum_probs=49.8

Q ss_pred             cEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            4 VKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         4 i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      .||.|+|.|.+|.. ++++|.++. .+|. ++|..... .... +               ...|         +.++...
T Consensus        23 ~~v~viGiG~sG~s~~A~~l~~~G-~~V~-~~D~~~~~-~~~~-l---------------~~~g---------i~~~~g~   74 (494)
T 4hv4_A           23 RHIHFVGIGGAGMGGIAEVLANEG-YQIS-GSDLAPNS-VTQH-L---------------TALG---------AQIYFHH   74 (494)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHTT-CEEE-EECSSCCH-HHHH-H---------------HHTT---------CEEESSC
T ss_pred             CEEEEEEEcHhhHHHHHHHHHhCC-CeEE-EEECCCCH-HHHH-H---------------HHCC---------CEEECCC
Confidence            68999999999996 899988885 6554 45543221 1110 0               0112         2233223


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      +++.+    .++|+|+-+.+-..+...+..+.++|+
T Consensus        75 ~~~~~----~~~d~vV~Spgi~~~~p~~~~a~~~gi  106 (494)
T 4hv4_A           75 RPENV----LDASVVVVSTAISADNPEIVAAREARI  106 (494)
T ss_dssp             CGGGG----TTCSEEEECTTSCTTCHHHHHHHHTTC
T ss_pred             CHHHc----CCCCEEEECCCCCCCCHHHHHHHHCCC
Confidence            44444    468999987665444455667788887

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=83.02  E-value=1.2  Score=42.29  Aligned_cols=35  Identities=23%  Similarity=0.383  Sum_probs=29.4

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++++|-|.|+ |.+|+.+++.|.+.++.+|+++...
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~  349 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG  349 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESC
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcC
Confidence            4578999999 9999999999998766788777643

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=83.01  E-value=1  Score=36.67  Aligned_cols=33  Identities=24%  Similarity=0.219  Sum_probs=26.8

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |+..+|.|+|+|..|.+++..|.++ +.+++-|-
T Consensus         1 M~~~dVvVVGgG~aGl~aA~~la~~-g~~v~lie   33 (232)
T 2cul_A            1 MAAYQVLIVGAGFSGAETAFWLAQK-GVRVGLLT   33 (232)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHT-TCCEEEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEe
Confidence            6678999999999999999999987 36665554

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=82.90  E-value=1  Score=38.81  Aligned_cols=32  Identities=34%  Similarity=0.483  Sum_probs=27.0

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |||-|.|+ |.+|+.+++.|.++++.+|+.+..
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r   33 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEec
Confidence            37999999 999999999999875678777653

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=82.64  E-value=2.3  Score=38.70  Aligned_cols=104  Identities=13%  Similarity=0.270  Sum_probs=58.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC--------hhhhhhheeecccC-CcccccceeeeCCceEEECC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT--------TDYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGE   73 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g   73 (265)
                      -.+|+|-|+|.+|..+++.|.+. +..+++|+|....        ...+..+.++.... +... ..+....+       
T Consensus       239 g~~VaVQG~GnVG~~aa~~L~e~-GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~-~~~~~~~~-------  309 (456)
T 3r3j_A          239 NKKCLVSGSGNVAQYLVEKLIEK-GAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLK-EYLKYSKT-------  309 (456)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHH-TCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGG-GGGGTCSS-------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchh-hhhhcCCC-------
Confidence            36899999999999999999876 4788888885311        11111110000000 0000 00000001       


Q ss_pred             EEEEEEecCCCCCCCcccccccEEEEec-CCcccHHhHHHHHhCCCCeEEE
Q 024565           74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~DvV~~at-~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        ...+   +.+++ |. .++|+.+=|. +...+.+.++.+.+.+|| +|+
T Consensus       310 --a~~v---~~~~i-~~-~~~DI~iPcA~~~~I~~~na~~l~~~~ak-~V~  352 (456)
T 3r3j_A          310 --AKYF---ENQKP-WN-IPCDIAFPCATQNEINENDADLFIQNKCK-MIV  352 (456)
T ss_dssp             --CEEE---CSCCG-GG-SCCSEEEECSCTTCBCHHHHHHHHHHTCC-EEE
T ss_pred             --ceEe---CCccc-cc-cCccEEEeCCCccchhhHHHHHHHhcCCe-EEE
Confidence              1121   24455 65 5799998875 556688888888777775 444

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=82.25  E-value=1.4  Score=37.86  Aligned_cols=33  Identities=27%  Similarity=0.336  Sum_probs=24.9

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +||+|+|+ |.+|..++..|...+.+.-+.+.|.
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di   34 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcC
Confidence            48999995 9999999999987654433444554

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=82.22  E-value=1.2  Score=39.15  Aligned_cols=31  Identities=19%  Similarity=0.433  Sum_probs=25.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      -+|.|+|+|.+|..+++++.... .+++++..
T Consensus       189 ~~VlV~GaG~vG~~~~q~a~~~G-a~Vi~~~~  219 (366)
T 1yqd_A          189 KHIGIVGLGGLGHVAVKFAKAFG-SKVTVIST  219 (366)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence            47999999999999999888764 67766654

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=82.21  E-value=1.6  Score=37.46  Aligned_cols=31  Identities=23%  Similarity=0.292  Sum_probs=25.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC--CCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQR--DDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v   33 (265)
                      |.+|.|||+|.+|..++..|.+.  .+++++-+
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~   33 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVW   33 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEE
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccCCceEEEE
Confidence            37999999999999999999882  35776544

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=82.21  E-value=3.3  Score=35.19  Aligned_cols=34  Identities=21%  Similarity=0.243  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..++.|+|+|-+|+.+++.|.+.. +.-+.|.++.
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G-~~~v~v~~R~  159 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQ-PASITVTNRT  159 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTC-CSEEEEEESS
T ss_pred             CCEEEEECchHHHHHHHHHHHhcC-CCeEEEEECC
Confidence            358999999999999999999874 5334455553

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=82.20  E-value=1.5  Score=38.68  Aligned_cols=31  Identities=16%  Similarity=0.129  Sum_probs=25.7

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      ++.+|.|||+|..|..++..|.++ +++++-+
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~-G~~v~v~   34 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDA-GVDVDVY   34 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCCEEEE
Confidence            357999999999999999999987 4776544

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=82.13  E-value=1.6  Score=38.49  Aligned_cols=30  Identities=20%  Similarity=0.402  Sum_probs=25.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      ..+|.|||+|.+|..++..|.++ +++++-+
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~v~   55 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQN-GIDVSVY   55 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-TCEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCCEEEE
Confidence            46899999999999999999987 4776555

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=82.12  E-value=1.1  Score=40.47  Aligned_cols=33  Identities=21%  Similarity=0.227  Sum_probs=27.5

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcC-CCeEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQR-DDVELVAV   33 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v   33 (265)
                      |++.+|.|||+|..|...+..|.++ |+.+++-+
T Consensus         2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~   35 (475)
T 3lov_A            2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLL   35 (475)
T ss_dssp             CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEE
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEE
Confidence            7778999999999999999999876 44676555

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=82.11  E-value=1.1  Score=41.92  Aligned_cols=35  Identities=26%  Similarity=0.228  Sum_probs=28.7

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcC-CCeEEEEEec
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQR-DDVELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~   35 (265)
                      |++++|.|||+|..|...+..|.+. ++.+++-+-.
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~   69 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVER   69 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEEC
Confidence            5578999999999999999998875 5688776643

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=82.01  E-value=1.7  Score=38.11  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=25.6

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      -+|.|+|+ |.+|...++++......+++++...
T Consensus       173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~  206 (363)
T 4dvj_A          173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASR  206 (363)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            36899996 9999999988776445787777653

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=81.88  E-value=1.2  Score=38.66  Aligned_cols=32  Identities=22%  Similarity=0.173  Sum_probs=25.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      -||+|+|+|.||..++..++++. ++|+ +.|..
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G-~~V~-l~D~~   38 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGG-FRVK-LYDIE   38 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CCEE-EECSC
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEE-EEECC
Confidence            58999999999999999998884 6643 55553

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=81.85  E-value=1.9  Score=38.81  Aligned_cols=35  Identities=34%  Similarity=0.588  Sum_probs=30.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      -.+|+|.|+|.+|+.++++|.+..+..+++|.|..
T Consensus       209 g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~  243 (415)
T 2tmg_A          209 KATVAVQGFGNVGQFAALLISQELGSKVVAVSDSR  243 (415)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence            47899999999999999999873369999999874

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=81.83  E-value=1.4  Score=38.47  Aligned_cols=32  Identities=16%  Similarity=0.057  Sum_probs=25.1

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |+.++|.|||+|..|..++..|.++. ++++-+
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G-~~v~vi   40 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNG-WDVRLH   40 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCC-CCEEEE
Confidence            34578999999999999999999874 665544

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=81.79  E-value=1.4  Score=36.65  Aligned_cols=31  Identities=19%  Similarity=0.121  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      +.+|.|||+|..|...+..|.++. ++++-+-
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g-~~v~lie   32 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRAR-KNILLVD   32 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC-CCEEEEe
Confidence            589999999999999999998874 6665553

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=81.67  E-value=1  Score=38.99  Aligned_cols=32  Identities=16%  Similarity=0.292  Sum_probs=25.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      -+|.|+|+|.+|...++++......+++++..
T Consensus       173 ~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~  204 (345)
T 3jv7_A          173 STAVVIGVGGLGHVGIQILRAVSAARVIAVDL  204 (345)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            37899999999999999887765577777754

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=81.66  E-value=1.7  Score=37.22  Aligned_cols=33  Identities=21%  Similarity=0.387  Sum_probs=27.7

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      +.++|-|.|+ |.+|+.+++.|.++. .+|+++..
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g-~~V~~~~r   52 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQG-HEILVIDN   52 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGT-CEEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEEC
Confidence            3478999999 999999999999874 67777654

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=81.44  E-value=1.2  Score=38.24  Aligned_cols=35  Identities=20%  Similarity=0.168  Sum_probs=26.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ++||+|+|+|.+|..++..|.....+.-+.+.|..
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~   48 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLS   48 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            57999999999999998888766544445566654

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=81.11  E-value=1.2  Score=37.52  Aligned_cols=32  Identities=19%  Similarity=0.302  Sum_probs=26.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      +.+|.|||+|.+|..++..|.++++++++-+-
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viE   70 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIE   70 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEE
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEE
Confidence            35899999999999999999987567766554

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=80.94  E-value=3.2  Score=36.10  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=25.2

Q ss_pred             cEEEEEccChhHHHH-HHHH-HcCCCeE-EEEEecc
Q 024565            4 VKIGINGFGRIGRLV-ARVI-LQRDDVE-LVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l-~~~L-~~~p~~e-l~~v~~~   36 (265)
                      -+|.|+|+|.+|... ++++ ... +.+ ++++...
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~  208 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRR  208 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCC
Confidence            689999999999999 8877 544 566 7777654

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=80.76  E-value=1.6  Score=37.32  Aligned_cols=32  Identities=22%  Similarity=0.220  Sum_probs=26.6

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |+++|-|.|+ |.+|+.+++.|.++. .+|+++.
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~   33 (348)
T 1ek6_A            1 MAEKVLVTGGAGYIGSHTVLELLEAG-YLPVVID   33 (348)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            1478999999 999999999999874 6777664

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=80.60  E-value=2.2  Score=36.37  Aligned_cols=32  Identities=28%  Similarity=0.358  Sum_probs=26.8

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      +++|-|.|+ |.+|+.+++.|.++. .+|+.+..
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r   37 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHG-YDVVIADN   37 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCC-CcEEEEec
Confidence            468999999 999999999999884 67766643

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=80.59  E-value=1.6  Score=37.42  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=25.9

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      +++|-|.|+ |.+|+.+++.|.++. .+|+++..
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r   51 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQG-RTVRGFDL   51 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTT-CCEEEEES
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCC-CEEEEEeC
Confidence            578999999 999999999999885 67776654

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=80.54  E-value=1.9  Score=37.46  Aligned_cols=32  Identities=22%  Similarity=0.337  Sum_probs=27.2

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++|-|.|+ |.+|+.+++.|.++. .+|+++...
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   57 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKG-YEVHGIVRR   57 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCC-CEEEEEECC
Confidence            68999999 999999999999874 677776643

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=80.40  E-value=4.8  Score=35.67  Aligned_cols=30  Identities=17%  Similarity=0.246  Sum_probs=24.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCe-EEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~-el~~v~   34 (265)
                      -+|.|+|+|.+|...++++.... . +++++.
T Consensus       215 ~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~  245 (404)
T 3ip1_A          215 DNVVILGGGPIGLAAVAILKHAG-ASKVILSE  245 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence            37999999999999999888764 6 666654

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=80.35  E-value=2.2  Score=34.43  Aligned_cols=35  Identities=14%  Similarity=0.260  Sum_probs=28.7

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCC-eEEEEEec
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDD-VELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~-~el~~v~~   35 (265)
                      |++.+|-|.|+ |.+|+.+++.|.++.. .+++.+..
T Consensus         1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r   37 (250)
T 1yo6_A            1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATAR   37 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEES
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEec
Confidence            66778999999 9999999999998853 66666553

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=80.34  E-value=1.4  Score=42.62  Aligned_cols=30  Identities=20%  Similarity=0.294  Sum_probs=24.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      +.||+|+|+|.||..++..+.+.. ++|+..
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG-~~V~l~  341 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSN-YPVILK  341 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTT-CCEEEE
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCC-CEEEEE
Confidence            468999999999999999999874 665444

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=80.13  E-value=2  Score=36.55  Aligned_cols=33  Identities=15%  Similarity=0.330  Sum_probs=27.6

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++||-|.|+ |.+|+.+++.|.++. .+|+++...
T Consensus        14 ~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~   47 (335)
T 1rpn_A           14 TRSALVTGITGQDGAYLAKLLLEKG-YRVHGLVAR   47 (335)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCC-CeEEEEeCC
Confidence            589999999 999999999999874 687777643

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=80.05  E-value=2  Score=38.54  Aligned_cols=30  Identities=27%  Similarity=0.383  Sum_probs=24.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCe--EEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDV--ELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~--el~~v   33 (265)
                      ..+|+|||+|..|..+++.|.++. .  +++.+
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G-~~~~V~v~   37 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEK-AFDQVTLF   37 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTT-CCSEEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHhcC-CCCCeEEE
Confidence            469999999999999999999874 4  65544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d1u8fo1	169	c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosp	1e-70
d1dssg1	169	c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosp	5e-69
d1rm4a1	172	c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosp	2e-65
d1u8fo2	164	d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate de	1e-62
d1gado1	166	c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosp	3e-62
d1hdgo1	169	c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosp	6e-62
d2b4ro1	166	c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosp	2e-61
d3cmco1	171	c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosp	4e-61
d1k3ta1	190	c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosp	2e-59
d3cmco2	163	d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate de	3e-59
d1rm4a2	163	d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate de	2e-57
d1cf2o1	171	c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosp	9e-55
d1obfo2	162	d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate de	3e-52
d2g82a2	162	d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate de	2e-51
d2g82a1	168	c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosp	1e-50
d1obfo1	173	c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosp	7e-50
d1k3ta2	169	d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate de	1e-49
d2czca2	172	c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosp	2e-49
d1b7go1	178	c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosp	2e-44
d1cf2o2	165	d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate de	3e-35
d1b7go2	162	d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate de	8e-35
d1f06a1	170	c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid de	5e-08
d2czca1	162	d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate de	5e-07
d1ydwa1	184	c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductas	7e-06
d1nvmb1	157	c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydroge	1e-05
d2g17a1	179	c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamy	3e-05
d1vkna1	176	c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamy	7e-05
d1diha1	162	c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate re	9e-05
d1tlta1	164	c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM	2e-04
d1lc0a1	172	c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {	3e-04
d1zh8a1	181	c.2.1.3 (A:4-131,A:276-328) Hypothetical protein T	4e-04
d1yl7a1	135	c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate re	0.003
d2cvoa1	183	c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde	0.004

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

 Score =  212 bits (542), Expect = 1e-70
 Identities = 89/164 (54%), Positives = 116/164 (70%), Gaps = 2/164 (1%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           KVK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K
Sbjct: 1   KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVK 59

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
            ++ K L+    P+T+F  R+P +I W + GAEYVVESTGVFT  +KA AHL+GGAK+VI
Sbjct: 60  AENGK-LVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 118

Query: 123 ISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVI 166
           ISAPS DAPMFV+GVN  +Y   L I+SNAS        +  ++
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIISNASNEFGYSNRVVDLM 162

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

 Score =  208 bits (531), Expect = 5e-69
 Identities = 94/168 (55%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 5   KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
           KIGINGFGRIGRLV R  L+    ++VAVNDPFI  +YM YMFKYDS HG +K  E+K +
Sbjct: 2   KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKAE 59

Query: 65  DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124
           D   L+   K +TVF    PE IPW++ GAEY+VESTGVFT  +KA+AH KGGAKKVIIS
Sbjct: 60  DGA-LVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118

Query: 125 APSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 172
           APS DAPMFV GVN  +Y  ++ +VSNAS        +  +I     +
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVIDLIKHMQKV 166

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  199 bits (507), Expect = 2e-65
 Identities = 67/172 (38%), Positives = 96/172 (55%), Gaps = 8/172 (4%)

Query: 5   KIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +      
Sbjct: 2   KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKT 60

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
             D    + G+  + V   RNP  +PW + G + V+E TGVF D+D A  HL+ GAKKV+
Sbjct: 61  AGDSAISVDGKV-IKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 119

Query: 123 ISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCT---TNCLAPLAKVIHDKF 170
           I+AP K D P +VVGVNE  Y     I+SNAS     +  +  LA ++ +K+
Sbjct: 120 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQRVVDLADIVANKW 171

>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

 Score =  192 bits (488), Expect = 1e-62
 Identities = 92/112 (82%), Positives = 98/112 (87%)

Query: 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 213
           CTTNCLAPLAKVIHD FGIVEGLMTTVH+ITATQKTVDGPS K WR GR A  NIIP+ST
Sbjct: 1   CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST 60

Query: 214 GAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           GAAKAVGKV+P LNGKLTGMAFRVPT +VSVVDLT RLEK A YD+IK  +K
Sbjct: 61  GAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVK 112

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

 Score =  191 bits (486), Expect = 3e-62
 Identities = 73/165 (44%), Positives = 102/165 (61%), Gaps = 5/165 (3%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEV 59

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
           KD   L+   K + V   R+P  + W E G + V E+TG+F   + A  H+  GAKKV++
Sbjct: 60  KDGH-LIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118

Query: 124 SAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIH 167
           + PSKD  PMFV G N  +Y  + +IVSNAS  T     +  +I 
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASNETGYSNKVLDLIA 162

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

 Score =  190 bits (484), Expect = 6e-62
 Identities = 67/171 (39%), Positives = 107/171 (62%), Gaps = 6/171 (3%)

Query: 5   KIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           ++ INGFGRIGRLV R+I +R   D+E+VA+ND    T  + ++ KYDSVH ++   +++
Sbjct: 2   RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG-KVE 59

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
             ++ +L+   K + VF   +P ++PW + G ++V+ESTGVF +++KA  HL+ GAKKVI
Sbjct: 60  YTEN-SLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVI 118

Query: 123 ISAPSKDAPM-FVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 172
           I+AP+K   +  V+G NE + KPE  I+S AS        +   +     +
Sbjct: 119 ITAPAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNRVVDTLELLLKM 169

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  189 bits (480), Expect = 2e-61
 Identities = 83/169 (49%), Positives = 111/169 (65%), Gaps = 6/169 (3%)

Query: 5   KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
           K+GINGFGRIGRLV R    R D+E+VA+NDPF+  +++ Y+ KYDSVHGQ+        
Sbjct: 2   KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCE--VTH 59

Query: 65  DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124
            D  LL GEK V+VF  ++P +IPW +   + V ESTGVF  K+ A++HLKGGAKKVI+S
Sbjct: 60  ADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 119

Query: 125 APSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 172
           AP KD  P++V+G+N H+Y  +  IVSNAS          +V+     I
Sbjct: 120 APPKDDTPIYVMGINHHQYDTKQLIVSNASN---EWGYSNRVLDLAVHI 165

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

 Score =  188 bits (479), Expect = 4e-61
 Identities = 73/175 (41%), Positives = 104/175 (59%), Gaps = 7/175 (4%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           VK+GINGFGRIGR V R  L+  D+E+VAVND     + + ++ KYDSVHG+        
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDAE--VS 58

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
            +   L+   K + V   R+PE + W E G + VVESTG FT ++ AA HL+ GAKKVII
Sbjct: 59  VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118

Query: 124 SAPS-KDAPMFVVGVNEHEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176
           SAP+  +    V+GVN+ +Y P+  +++SNAS  T     +  +    +   +GL
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHRVVDLAA--YIASKGL 171

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} Length = 190

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  185 bits (470), Expect = 2e-59
 Identities = 71/183 (38%), Positives = 106/183 (57%), Gaps = 13/183 (7%)

Query: 3   KVKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKH 58
            +K+GINGFGRIGR+V + + +      ++++VAV D     +Y  Y  +YD+VHG++K+
Sbjct: 2   PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61

Query: 59  -------HELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAA 111
                       KDD  ++ G + + V   RNP ++PW + G EYV+ESTG+FT K  A 
Sbjct: 62  EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121

Query: 112 AHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKP-ELNIVSNASCTTNCLAPLAKVIHDK 169
            HL+GGA+KV+ISAP+   A   V+GVN HEY P E ++VSNA         +  ++   
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNADNEWGYSHRVVDLVRHM 181

Query: 170 FGI 172
              
Sbjct: 182 ASK 184

>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 163

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

 Score =  183 bits (466), Expect = 3e-59
 Identities = 70/112 (62%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 213
           CTTNCLAP AKV+H++FGIV G+MTTVHS T  Q+ +D P  KD R  RAA+ +IIP++T
Sbjct: 1   CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAAAESIIPTTT 59

Query: 214 GAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           GAAKAV  VLP L GKL GMA RVPT +VSVVDL   LEK+ + +E+ AA+K
Sbjct: 60  GAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALK 111

>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 163

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  178 bits (454), Expect = 2e-57
 Identities = 63/112 (56%), Positives = 78/112 (69%), Gaps = 1/112 (0%)

Query: 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 213
           CTTNCLAP  KV+  KFGI++G MTT HS T  Q+ +D    +D R  RAA  NI+P+ST
Sbjct: 1   CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAACLNIVPTST 59

Query: 214 GAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           GAAKAV  VLP L GKL G+A RVPT +VSVVDL V++ K    +E+ AA +
Sbjct: 60  GAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFR 111

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

 Score =  172 bits (437), Expect = 9e-55
 Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 16/183 (8%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
             + ING+G +G+ VA  I Q+DD++++ V+             K               
Sbjct: 2   KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKT-RPDFEARMALKKGYDLY-------VA 53

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
             ++  LF +  + V G      +      A+ V++ T           + + G K +  
Sbjct: 54  IPERVKLFEKAGIEVAG-----TVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108

Query: 124 SAPSKDAP--MFVVGVNEHEY-KPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
                +     F    N  E    +   V       + +  + ++  DK+  +      +
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDAVRAILEMEEDKYKSINKTNKAM 168

Query: 181 HSI 183
           + +
Sbjct: 169 NIL 171

>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} Length = 162

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

 Score =  165 bits (419), Expect = 3e-52
 Identities = 57/113 (50%), Positives = 80/113 (70%), Gaps = 1/113 (0%)

Query: 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS 212
           SCTTNCLAPL K ++DK G+ +GLMTTVH+ T  Q   D    +D R  R+A+ ++IP+ 
Sbjct: 1   SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTK 59

Query: 213 TGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           TGAA AVG VLP L+GKL G A RVPT++VS+VDL+   +++ + +E+   +K
Sbjct: 60  TGAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILK 112

>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Length = 162

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

 Score =  163 bits (414), Expect = 2e-51
 Identities = 58/112 (51%), Positives = 79/112 (70%), Gaps = 1/112 (0%)

Query: 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 213
           CTTN LAP+ KV+ + FG+ + LMTTVHS T  Q+ +D P  KD R  RAA+ NIIP++T
Sbjct: 1   CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLP-HKDLRRARAAAINIIPTTT 59

Query: 214 GAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           GAAKA   VLP+L G+  GMA RVPT   S+ D+T  L+++ + +E+ AA+K
Sbjct: 60  GAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALK 111

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

 Score =  161 bits (409), Expect = 1e-50
 Identities = 76/170 (44%), Positives = 105/170 (61%), Gaps = 9/170 (5%)

Query: 5   KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
           K+GINGFGRIGR V R++  R  VE+  +ND       + ++ KYDS++ ++        
Sbjct: 2   KVGINGFGRIGRQVFRILHSRG-VEVALIND-LTDNKTLAHLLKYDSIYHRFPGE--VAY 57

Query: 65  DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124
           DD+ L    K +    V++P+EIPWAE G   V+ESTGVFTD DKA AHL+GGAKKVII+
Sbjct: 58  DDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIIT 117

Query: 125 APSKDAPM-FVVGVNEHEYKP-ELNIVSNASCT---TNCLAPLAKVIHDK 169
           AP+K   +  V+GVN   Y P   +I+SNAS      N +A L +++  K
Sbjct: 118 APAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANRVADLVELVLRK 167

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} Length = 173

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

 Score =  159 bits (404), Expect = 7e-50
 Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 22/187 (11%)

Query: 4   VKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
           +++ ING+GRIGR + R   +     D+E+VA+ND         ++ +YD+ HG++    
Sbjct: 2   IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND-LGDPKTNAHLTRYDTAHGKFPGT- 59

Query: 61  LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
           + V     ++ G+K + V   RNP ++PW     + V+E TG FT K+KA AH+KGGAKK
Sbjct: 60  VSVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK 118

Query: 121 VIISAPSKD--APMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178
           VIISAP         V GVN    K    ++SNA               +++G    ++ 
Sbjct: 119 VIISAPGGADVDATVVYGVNHGTLKSTDTVISNAD--------------NEWGFSNRMLD 164

Query: 179 TVHSITA 185
           T  ++ +
Sbjct: 165 TTVALMS 171

>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} Length = 169

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  159 bits (402), Expect = 1e-49
 Identities = 79/114 (69%), Positives = 91/114 (79%), Gaps = 1/114 (0%)

Query: 153 SCTTNCLAPLAKV-IHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPS 211
           SCTTNCLAP+  V + + FG+  GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS
Sbjct: 1   SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPS 60

Query: 212 STGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
           +TGAAKAVG V+P+  GKLTGM+FRVPT DVSVVDLT    +D S  EI AA+K
Sbjct: 61  TTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALK 114

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  158 bits (402), Expect = 2e-49
 Identities = 32/179 (17%), Positives = 60/179 (33%), Gaps = 16/179 (8%)

Query: 3   KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           KVK+G+NG+G IG+ VA  + ++DD+EL+ +       D+  Y  K   +       E  
Sbjct: 2   KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITK--TKPDFEAYRAKELGIPVYAASEEFI 59

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
            + +K            G      +       + +V++T           + K G K + 
Sbjct: 60  PRFEKE-----------GFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108

Query: 123 ISAPSKDA--PMFVVGVNEHEY-KPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178
                 D     FV   N           V       + +  + ++      I +   +
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENIDAIRAMFELADKWDSIKKTNKS 167

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  146 bits (369), Expect = 2e-44
 Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 32/191 (16%)

Query: 4   VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
           V + +NG+G IG+ VA  I+++ D++LV V       +      +   ++         V
Sbjct: 2   VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIY---------V 52

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
                  F E  + V        +      ++ VV++T           +L+   +  I 
Sbjct: 53  PQQSIKKFEESGIPV-----AGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIF 106

Query: 124 SAPSKDA---PMFVVGVNEHEY--KPELNIVSNASCTTNCLAPL------------AKVI 166
               K       F    N +E   K  + +VS +      +  +             ++ 
Sbjct: 107 QGGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVPENIDAIRASMKLMSAEDSMRIT 166

Query: 167 HDKFGIVEGLM 177
           ++  GI++G +
Sbjct: 167 NESLGILKGYL 177

>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Length = 165

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

 Score =  121 bits (306), Expect = 3e-35
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 12/114 (10%)

Query: 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS 212
           SC T  L    K +HD FGI +     V                  +  +     IIP+ 
Sbjct: 1   SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGA-----------DPAQVSKGPINAIIPNP 49

Query: 213 TGAAKAVGK-VLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
                  G  V   L+  +  MA  VPT  +   ++ V +E+  + D+I    +
Sbjct: 50  PKLPSHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFE 103

>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 162

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  120 bits (303), Expect = 8e-35
 Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 13/114 (11%)

Query: 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 213
           C T  L      ++    + +   T V      +         + + G   S    P++ 
Sbjct: 1   CNTTALLRTICTVNKVSKVEKVRATIVRRAADQK---------EVKKGPINSLVPDPATV 51

Query: 214 GAA--KAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
            +   K V  V+  L   +  MA   PT  + +  + + L+      +I + ++
Sbjct: 52  PSHHAKDVNSVIRNL--DIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLE 103

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

 Score = 49.5 bits (117), Expect = 5e-08
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 1  MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
          M  +++ I G+G +GR V ++I ++ D++LV +     T D  T +F    V       +
Sbjct: 1  MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVD 60

Query: 61 L 61
          +
Sbjct: 61 V 61

>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 162

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.4 bits (110), Expect = 5e-07
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 13/113 (11%)

Query: 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS 212
           SC T  L      I +    V             ++  D          R     I P+ 
Sbjct: 1   SCNTTGLVRTLSAIREYADYVY--------AVMIRRAAD-----PNDTKRGPINAIKPTV 47

Query: 213 TGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
              +     V   +   +  MAF VPT  + V  + V L+K  + D++    +
Sbjct: 48  EVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFE 100

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.4 bits (101), Expect = 7e-06
 Identities = 9/57 (15%), Positives = 18/57 (31%)

Query: 3  KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
          +++IG+ G   I R V+R I    +  +  V    +                +    
Sbjct: 1  QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGS 57

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Length = 157

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 34/170 (20%), Positives = 54/170 (31%), Gaps = 30/170 (17%)

Query: 3   KVKIGINGFGRIGR-LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
           K+K+ I G G IG  L+ +V+     +E+ A+    I                       
Sbjct: 4   KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVG--IDAASDGLARAQ---RMGVTTTYA 58

Query: 62  KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKV 121
            V+    L        VF            T A   V++      +        G   ++
Sbjct: 59  GVEGLIKLPEFADIDFVF----------DATSASAHVQN------EALLRQAKPG--IRL 100

Query: 122 IISAPSKDAPMFVVGVN--EHEYKPELNIVSNASCTT----NCLAPLAKV 165
           I   P+   P  V  VN  EH  K  +N+V+ A          LA   ++
Sbjct: 101 IDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTYAGNLDIMTSAALATAERM 150

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 18/173 (10%), Positives = 39/173 (22%), Gaps = 4/173 (2%)

Query: 5   KIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
              I G  G  G  +   + +   + + A+     + D    +              L+ 
Sbjct: 3   NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQP 62

Query: 64  KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
             D      +  V      +      A    +       +                    
Sbjct: 63  MSDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYG-FT 121

Query: 124 SAPSKDAPMFVVGVNEHEYK--PELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174
               +     V G+ E         N+++         A   +  + +FG  E
Sbjct: 122 HQYPELLEQAVYGLAEWNVDKLNTANLIAVPGLLKGAAAQAVQCANIRFGFAE 174

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.2 bits (93), Expect = 7e-05
 Identities = 19/174 (10%), Positives = 47/174 (27%), Gaps = 13/174 (7%)

Query: 4   VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
           ++ GI G  G  G  + R++    + ++  ++        +  +F           + + 
Sbjct: 2   IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPS------TLENSIL 55

Query: 63  VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
            + D   +     V    +                +   G     D    + +       
Sbjct: 56  SEFDPEKVSKNCDVLFTALPAGASYDLVRELKGVKIIDLGADFRFDDPGVYRE----WYG 111

Query: 123 ISAPSKDAPMFVVGVNEHEYK--PELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174
                 +    V G+ E   +      +V N            + ++  FG+ E
Sbjct: 112 KELSGYENIKRVYGLPELHREEIKNAQVVGNPGLVKGASGQAVQNMNIMFGLDE 165

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (92), Expect = 9e-05
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 3  KVKIGINGF-GRIGRLVARVILQRDDVELVAVND----PFITTDYMTYMFKYD-SVHGQW 56
           +++ I G  GR+GR + +  L  + V+L A  +      + +D           V  Q 
Sbjct: 4  NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQS 63

Query: 57 KHHELKVKDDKTLLFG 72
              +K   D  + F 
Sbjct: 64 SLDAVKDDFDVFIDFT 79

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Length = 164

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 1/58 (1%)

Query: 3  KVKIGINGFGRIG-RLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
          K++IG+ G G I  +    V+    D  L     P                       
Sbjct: 1  KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSL 58

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 1  MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
           GK  + + G GR G +  R +        + +   
Sbjct: 5  SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF 40

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 2/61 (3%)

Query: 1  MGKVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKH 58
          + K+++GI G G   R +    L+      E+ AV     +          +        
Sbjct: 1  LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYE 60

Query: 59 H 59
           
Sbjct: 61 E 61

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 5  KIGINGF-GRIGRLVARVILQRDDVELVAVNDPF-----ITTDYMTYMFKYDSVHGQWKH 58
          ++G+ G  G++G  + R +   DD+ L A  D       +T      +  +        +
Sbjct: 1  RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGN 60

Query: 59 HELKVKDDKTLLFG 72
           E  + +    + G
Sbjct: 61 LEFLIDNGIHAVVG 74

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 16/183 (8%), Positives = 48/183 (26%), Gaps = 8/183 (4%)

Query: 3   KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
           +V+I + G  G  G  + R++       +  +       +    +F +           +
Sbjct: 5   EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAV 64

Query: 62  KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVES-TGVFTDKDKAAAHLKGGAKK 120
           K  D   +           + +       +   + +                + +     
Sbjct: 65  KDADFSNV-----DAVFCCLPHGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGHS 119

Query: 121 VIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
                  ++A   +  V  +E +    +V+N            + ++   G+ E      
Sbjct: 120 HRAPELQQEAVYGLTEVLRNEIR-NARLVANPGLVKGASGQAVQNLNLMMGLPENTGLQY 178

Query: 181 HSI 183
             +
Sbjct: 179 QPL 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.94
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.92
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	99.92
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	99.92
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	99.92
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	99.92
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.92
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	99.91
d1u8fo2	164	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.87
d3cmco2	163	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.87
d1rm4a2	163	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.87
d1k3ta2	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.87
d1obfo2	162	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.87
d2g82a2	162	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.86
d2hjsa2	190	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	99.79
d1t4ba2	221	Aspartate beta-semialdehyde dehydrogenase {Escheri	99.78
d1mb4a2	222	Aspartate beta-semialdehyde dehydrogenase {Vibrio	99.78
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	99.77
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	99.76
d1cf2o2	165	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.71
d2gz1a2	202	Aspartate beta-semialdehyde dehydrogenase {Strepto	99.71
d1b7go2	162	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.64
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	99.62
d2g17a2	155	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	99.62
d2cvoa2	165	Putative semialdehyde dehydrogenase {Rice (Oryza s	99.56
d1vkna2	163	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	99.54
d2czca1	162	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.48
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	99.25
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	98.94
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.79
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.77
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	98.7
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.64
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	98.52
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	98.44
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	98.43
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	98.42
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	98.35
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	98.02
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	97.94
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	97.58
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.56
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.49
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.49
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.32
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.22
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.22
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.22
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.2
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.18
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.13
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.09
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.07
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	97.06
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.92
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.86
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.79
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.63
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.63
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.62
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.57
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.47
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.47
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.47
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.44
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.39
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.32
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.29
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.27
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.13
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.93
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.81
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.72
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.67
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	95.64
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	95.44
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	95.39
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.36
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	95.22
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.17
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.02
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	95.01
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.79
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.31
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.28
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.15
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.09
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	93.95
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	93.65
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.53
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.42
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.23
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.95
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.83
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	92.8
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	92.8
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.63
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.49
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.49
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.48
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.35
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.15
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.87
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	91.76
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.35
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	91.31
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	91.28
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	91.28
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.15
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	91.13
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.09
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.82
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.79
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.71
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	90.67
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	90.46
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	90.19
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.17
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	90.08
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	90.06
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	89.98
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	89.95
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	89.84
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	89.84
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	89.81
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	89.77
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	89.73
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	89.68
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	89.5
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.47
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.3
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	89.09
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	88.87
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	88.86
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	88.72
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	88.7
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	88.63
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.44
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	88.24
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	88.23
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	88.18
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	88.15
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	88.1
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	88.05
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.0
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.9
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	86.89
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	86.71
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	86.5
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.49
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	86.34
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	85.97
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	85.88
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	85.86
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	85.76
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	85.76
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	85.72
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	85.22
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	85.21
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	85.16
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	85.12
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	85.03
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.47
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	83.94
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	83.34
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	83.27
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	83.07
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	83.03
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	82.97
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.62
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	82.62
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	82.6
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	82.32
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	82.1
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	81.87
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	81.75
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	81.38
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	81.38
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	81.34
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	81.04
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	80.96
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	80.61
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	80.36
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	80.26
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	80.02

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.2e-38  Score=247.98  Aligned_cols=162  Identities=45%  Similarity=0.792  Sum_probs=150.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      +|||||+|||+|||.++|++.++|++++++|++.. +.+.++|+++|||+||+|. +.+..+++ .+.++|+.+++++..
T Consensus         1 tikigINGFGRIGR~v~R~~~~~~~i~ivaINd~~-~~~~~ayLl~yDSvhG~~~-~~v~~~~~-~l~ing~~I~i~~~~   77 (166)
T d1gado1           1 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL-DADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAER   77 (166)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS-CHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             CeEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCC-CHHHHhhhheecCCCCCcC-CeEEEeCC-EEEECCEEEEEEeCC
Confidence            47999999999999999999999999999999964 8899999999999999998 77776665 799999999999888


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccCCCCeEEcCCCchhhhHh
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAP  161 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~  161 (265)
                      +|++++|++.++|+|+||||.+.+.+.+..++++|+|+|++|++..| .+++|||+|.+.+++ .++||++||+|+|++|
T Consensus        78 ~p~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~d~~~~iV~GvN~~~~~~-~~iiS~aSCTTnclaP  156 (166)
T d1gado1          78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASNETGYSNK  156 (166)
T ss_dssp             SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCS-CSEEECCCTTHHHHHH
T ss_pred             ChHHCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeeccccccCCEEEeCccccccCC-CCEEEeccHHHhHHHH
Confidence            99999999889999999999999999999999999999999999655 899999999999986 6899999999999999


Q ss_pred             HHHHHHH
Q 024565          162 LAKVIHD  168 (265)
Q Consensus       162 ~L~pL~~  168 (265)
                      .++.|++
T Consensus       157 v~kvl~~  163 (166)
T d1gado1         157 VLDLIAH  163 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999865

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=100.00  E-value=2.2e-38  Score=252.96  Aligned_cols=167  Identities=56%  Similarity=0.905  Sum_probs=156.4

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCC
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP   84 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~   84 (265)
                      ||||+|+|+|||.++|++.+++ +++++|+++..+.+.++|+++|||+||.|. ..+...++ .+.++|+.++++...+|
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~-~~ivaINd~~~~~~~~~yLlkyDS~hG~~~-~~i~~~~~-~l~ing~~I~~~~~~~p   78 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKAEDG-ALVVDGKKITVFNEMKP   78 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHT-CCEEEEECTTSCHHHHHHHHHCCTTTCCCS-SCEEEETT-EEEETTEEEEEECCSSG
T ss_pred             eEEEECCcHHHHHHHHHHHhCC-CcEEEECCCCcCHHHHHHHHhcccccCCcC-CeEEEeCC-EEEECCEEEEEEecCCh
Confidence            8999999999999999999885 899999998778899999999999999999 77776665 79999999999988899


Q ss_pred             CCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchhhhHhHHH
Q 024565           85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAK  164 (265)
Q Consensus        85 ~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~~L~  164 (265)
                      ++++|...++|+|++|||.+.+.+.+..++++|+|+|++|++..|.|++|||+|.+.++++.++||+++|+++|++|.++
T Consensus        79 ~~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~d~~~iV~GVN~~~~~~~~~IIS~aSCTtn~laP~~k  158 (169)
T d1dssg1          79 ENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVID  158 (169)
T ss_dssp             GGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSSCBCCTTTSGGGCCTTCCEEECCCTTHHHHHHHHH
T ss_pred             HHCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCccccceeeecccccccCCCCCEEEChhHHHHHHHHHHH
Confidence            99999988999999999999999999999999999999999988889999999999998767899999999999999999


Q ss_pred             HHHHhcCceE
Q 024565          165 VIHDKFGIVE  174 (265)
Q Consensus       165 pL~~~~~i~~  174 (265)
                      .|+++|||++
T Consensus       159 ~l~~~fgIe~  168 (169)
T d1dssg1         159 LIKHMQKVDS  168 (169)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHhcCccc
Confidence            9999999873

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=100.00  E-value=3.8e-37  Score=245.80  Aligned_cols=164  Identities=53%  Similarity=0.943  Sum_probs=153.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ++||||+|||+|||.++|++.+++++++++|+++..+.+.++|+++|||+||.|+ ..+...++ .+.++|+.+.++...
T Consensus         1 kikIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~-~l~i~~~~I~~~~~~   78 (169)
T d1u8fo1           1 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFH-GTVKAENG-KLVINGNPITIFQER   78 (169)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             CcEEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcC-CeEEEECC-EEEECCEEEEEEECC
Confidence            5899999999999999999999999999999998778899999999999999998 77777665 899999999999888


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchhhhHhH
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPL  162 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~~  162 (265)
                      +|++++|.+.++|+|++|||.+.+++.+..++++|+|+|++|++..|.|++|||+|.+.++++.++||+.+|++.|++|.
T Consensus        79 ~p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~d~~tiV~GvN~~~~~~~~~iIS~aSCTtn~~aPv  158 (169)
T d1u8fo1          79 DPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASNEFGYSNRV  158 (169)
T ss_dssp             SGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSSSCBCCTTTTGGGCCTTCSEEECCCTTHHHHHHH
T ss_pred             ChhhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEeecccccccceEEeecCHHHcCCCCCEEECccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888889999999999987679999999999999999


Q ss_pred             HHHHHH
Q 024565          163 AKVIHD  168 (265)
Q Consensus       163 L~pL~~  168 (265)
                      ++.|..
T Consensus       159 ~~vl~~  164 (169)
T d1u8fo1         159 VDLMAH  164 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999964

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=100.00  E-value=4.4e-37  Score=245.85  Aligned_cols=166  Identities=45%  Similarity=0.719  Sum_probs=152.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN   83 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   83 (265)
                      +||||+|+|+|||.++|++.++|++++++|+++. +.+.++|+++|||+||.|. ..+...++ .+.++|+.+.++...+
T Consensus         2 ikIgINGfGRIGR~v~R~~l~~~~~~ivaINd~~-d~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~i~~~~~   78 (171)
T d3cmco1           2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLT-DANTLAHLLKYDSVHGRLD-AEVSVNGN-NLVVNGKEIIVKAERD   78 (171)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECSS-CHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEECCSS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEcCCC-CHHHHhhhhcccccCCccc-ccccccCC-CEEeCCcceeeEecCC
Confidence            7999999999999999999999999999999975 8899999999999999999 77777665 7999999999998899


Q ss_pred             CCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccC-CCCeEEcCCCchhhhHh
Q 024565           84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKP-ELNIVSNASCTTNCLAP  161 (265)
Q Consensus        84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~-~~~~Va~p~C~~ta~~~  161 (265)
                      |++++|...++|+|+||||.+.+++.+..++++|+|+|++|++..| .+++|||+|++.+++ ..++||+++|+|+|++|
T Consensus        79 p~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~~d~~~t~V~GvN~~~~~~~~~~iIS~aSCTtn~laP  158 (171)
T d3cmco1          79 PENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHR  158 (171)
T ss_dssp             GGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTSGGGCCTTTCCEEECCCTTHHHHHH
T ss_pred             HHHccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEecccccccceeeeccchheecCCCCeEEEehhHHHhHHHH
Confidence            9999999999999999999999999999999999999999999655 568999999999975 46899999999999999


Q ss_pred             HHHHHHHhcCceE
Q 024565          162 LAKVIHDKFGIVE  174 (265)
Q Consensus       162 ~L~pL~~~~~i~~  174 (265)
                      .++.|  +|||++
T Consensus       159 v~kvl--~fgi~~  169 (171)
T d3cmco1         159 VVDLA--AYIASK  169 (171)
T ss_dssp             HHHHH--HHHHHT
T ss_pred             HHHHH--HhhHhh
Confidence            99998  488864

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=5.2e-36  Score=239.06  Aligned_cols=163  Identities=52%  Similarity=0.870  Sum_probs=150.6

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCC
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP   84 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~   84 (265)
                      ||||+|+|+|||.++|++.++|++++++|+++..+.+.++|+++|||+||.|. ..+...++ .+.++|+.+++++..+|
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~-~~v~~~~~-~l~i~~~~I~i~~~~~p   79 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVTHADG-FLLIGEKKVSVFAEKDP   79 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEESSCEEEEECCSSG
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccce-eeeccCCc-eEEecCcEEEEEeCCCh
Confidence            89999999999999999999999999999998778999999999999999999 77766665 79999999999988999


Q ss_pred             CCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CCceEEeeeccccccCCCCeEEcCCCchhhhHhHH
Q 024565           85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLA  163 (265)
Q Consensus        85 ~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~~L  163 (265)
                      ++++|...++|+|++|||.+.+++.+..++++|+|+|++|++.. +.|++|||+|++.++++.++||++||.   ++|.+
T Consensus        80 ~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~kd~~~tiV~GVN~~~~~~~~~IIS~AS~~---~ap~~  156 (166)
T d2b4ro1          80 SQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASNE---WGYSN  156 (166)
T ss_dssp             GGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCTTCCEEECCCTT---HHHHH
T ss_pred             HHccccccCCCEEEEecccccchhhhhhhhccCCCEEEEecccccccceeeeecchhhcCCCCCEEEChhHH---HHHHH
Confidence            99999988999999999999999999999999999999999954 589999999999998767899999984   67888


Q ss_pred             HHHHHhcCc
Q 024565          164 KVIHDKFGI  172 (265)
Q Consensus       164 ~pL~~~~~i  172 (265)
                      +.|+++|||
T Consensus       157 kvl~~~fgI  165 (166)
T d2b4ro1         157 RVLDLAVHI  165 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHcCc
Confidence            999999887

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=1.2e-35  Score=238.19  Aligned_cols=165  Identities=41%  Similarity=0.708  Sum_probs=146.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |||||+|+|+|||.++|++.++  +++++++|+++. +.+.++|+++|||+||.|. ..+...++..+.++|+.+++++.
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~ayLlkyDSvhG~~~-~~i~~~~~~~~~ing~~I~~~~~   78 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFD-ADVKTAGDSAISVDGKVIKVVSD   78 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTT-CHHHHHHHHHCCTTTCSCS-SCEEECTTSEEEETTEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCC-CHHHHHHHHhcCccccccc-ceeEecCCcceEECCEEEEEecC
Confidence            6999999999999999998865  459999999985 7899999999999999998 66655554456789999999988


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CCceEEeeeccccccCCCCeEEcCCCc---hh
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCT---TN  157 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~~~~v~~vn~~~~~~~~~~Va~p~C~---~t  157 (265)
                      .+|++++|++.++|+|+||||.+.+++.+..++++|+|+|++|++.. +.+++|||+|.+.++++.++||++||+   +.
T Consensus        79 ~~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~k~~~~tiV~GVN~~~~~~~~~iIS~aSCTtn~~~  158 (172)
T d1rm4a1          79 RNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQ  158 (172)
T ss_dssp             SCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCCBSSCCBCCTTTTGGGCCTTCSEEECCCTTHHHHH
T ss_pred             CChHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeecccccceeeEEeecchhhcCCCCCEEEcccchhccHh
Confidence            99999999988999999999999999999999999999999999853 588999999999998767899999999   44


Q ss_pred             hhHhHHHHHHHhc
Q 024565          158 CLAPLAKVIHDKF  170 (265)
Q Consensus       158 a~~~~L~pL~~~~  170 (265)
                      ++++.++.|+++|
T Consensus       159 ~l~pv~~vi~~~f  171 (172)
T d1rm4a1         159 RVVDLADIVANKW  171 (172)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HhHHHHHHHHhhc
Confidence            5888888888876

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=100.00  E-value=4.3e-35  Score=234.34  Aligned_cols=162  Identities=47%  Similarity=0.755  Sum_probs=148.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN   83 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   83 (265)
                      |||||+|+|+|||.++|+|.+. ++++++|++.. +.+.++||++|||+||.|. ..+...++ .+.++|+.+++++..+
T Consensus         1 ikigINGfGRIGR~~~R~l~~~-~i~iv~INd~~-~~~~~ayLl~yDS~hG~~~-~~v~~~~~-~l~i~g~~I~~~~~~~   76 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSR-GVEVALINDLT-DNKTLAHLLKYDSIYHRFP-GEVAYDDQ-YLYVDGKAIRATAVKD   76 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSS-CHHHHHHHHHCCTTTCSCS-SCEEECSS-EEEETTEEEEEECCSS
T ss_pred             CEEEEECCcHHHHHHHHHHhcC-CCEEEEECCCc-chhhhhheeecccccCccc-cccccccc-eeEecceeEEEEecCC
Confidence            6999999999999999998765 69999999984 8899999999999999998 77666555 7999999999999899


Q ss_pred             CCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccC-CCCeEEcCCCc---hhh
Q 024565           84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKP-ELNIVSNASCT---TNC  158 (265)
Q Consensus        84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~-~~~~Va~p~C~---~ta  158 (265)
                      |++++|...++|+|++|||.+.+++.++.++++|+|+|++|++.++ .+.+|||+|++.+++ ..++||+.+|+   ++|
T Consensus        77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~kd~~~~iV~GvN~~~y~~~~~~IIS~ASCT~~~tN~  156 (168)
T d2g82a1          77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANR  156 (168)
T ss_dssp             GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTTCCEEECCCTTHHHHHH
T ss_pred             hHHCcccccCCceeEeccccccchHHhhhhhccccceeeeccccccccceeEeeccHHHccCCCCcEEEeccccCccHHH
Confidence            9999999999999999999999999999999999999999999644 678999999999985 45899999999   899


Q ss_pred             hHhHHHHHHHh
Q 024565          159 LAPLAKVIHDK  169 (265)
Q Consensus       159 ~~~~L~pL~~~  169 (265)
                      ++|.++.|+++
T Consensus       157 laPv~k~i~~k  167 (168)
T d2g82a1         157 VADLVELVLRK  167 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999999987

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=2.8e-35  Score=239.71  Aligned_cols=171  Identities=42%  Similarity=0.747  Sum_probs=149.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC----CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeC-------CceEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD-------DKTLLF   71 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~----p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~   71 (265)
                      +|||||+|+|+|||.++|++.++    +++++++|+++..+.+.++|+++|||+||.|. +.+....       ++.+.+
T Consensus         2 ~ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~-~~v~~~~~~~~~~~~~~~i~   80 (190)
T d1k3ta1           2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFK-YEVTTTKSSPSVAKDDTLVV   80 (190)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECS-SCEEEECSSTTCSSCCEEEE
T ss_pred             CeEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCC-ceEEEccCccccccccceEE
Confidence            58999999999999999988754    57999999999878999999999999999998 6655432       234567


Q ss_pred             CCEEEE-EEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CCceEEeeeccccccC-CCCe
Q 024565           72 GEKPVT-VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKP-ELNI  148 (265)
Q Consensus        72 ~g~~~~-~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~~~~v~~vn~~~~~~-~~~~  148 (265)
                      +|+.+. +..+.+|++++|+..++|+|++|||.+.+++.+..++++|+|+|++|++.+ +.|++|||+|++.+++ ..++
T Consensus        81 ~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~~~~~tiV~GVN~~~y~~~~~~I  160 (190)
T d1k3ta1          81 NGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHV  160 (190)
T ss_dssp             TTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSSCEECCTTTTGGGCCTTTCSE
T ss_pred             cCceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeeeccCCcccCCeEEeccCHhhcCCccCcE
Confidence            786654 444678999999988999999999999999999999999999999999844 5889999999999985 4689


Q ss_pred             EEcCCCchhhhHhHHHHHHHhcCceE
Q 024565          149 VSNASCTTNCLAPLAKVIHDKFGIVE  174 (265)
Q Consensus       149 Va~p~C~~ta~~~~L~pL~~~~~i~~  174 (265)
                      ||+.+|++.|++|.++.|+..|++++
T Consensus       161 IS~ASCTtn~lapv~kvi~~~f~~~~  186 (190)
T d1k3ta1         161 VSNADNEWGYSHRVVDLVRHMASKDR  186 (190)
T ss_dssp             EECCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEchhHhhhHHHHHHHHHHHHhcccc
Confidence            99999999999999999999998875

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=9.8e-35  Score=231.53  Aligned_cols=162  Identities=41%  Similarity=0.723  Sum_probs=147.3

Q ss_pred             EEEEEccChhHHHHHHHHHc--CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            5 KIGINGFGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~--~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ||||+|||+|||.++|.+.+  +|++++++|++.. +.+.++|+++|||+||.|. ..+..+++ .|.++|+.+++++..
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~-~~e~~ayLlkyDS~hG~~~-~~v~~~~~-~l~ing~~I~~~~~~   78 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLT-DTKTLAHLLKYDSVHKKFP-GKVEYTEN-SLIVDGKEIKVFAEP   78 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSS-CHHHHHHHHHCCTTTCCCS-SCEEECSS-EEEETTEEEEEECCS
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCc-cHHHHHHHHhccccccccC-ceEEEECC-EEEECCEEEEEEeCC
Confidence            89999999999999999875  6789999999974 8899999999999999998 77776655 799999999999988


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccCCCCeEEcCCCchhhhHh
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAP  161 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~  161 (265)
                      +|++++|.+.++|+|++|||.+.+.+.+..++++|+|+|++|++.++ .+.+|||+|+++++++.++||+.+|++.++++
T Consensus        79 ~p~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~kd~~~tiV~GvN~~~~~~~~~iiS~aScttn~~a~  158 (169)
T d1hdgo1          79 DPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNR  158 (169)
T ss_dssp             SGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTCCEEECCCTTHHHHHH
T ss_pred             ChhhCCccccCCCEEEEecceeccccchhhhccCCCceEEEecccCCCcceeEEecchhhcCCcCcEEEchhHhhhHHHH
Confidence            99999999889999999999999999999999999999999999654 67899999999999877999999999999998


Q ss_pred             HHHHHHHh
Q 024565          162 LAKVIHDK  169 (265)
Q Consensus       162 ~L~pL~~~  169 (265)
                      .+..|...
T Consensus       159 v~~vi~~l  166 (169)
T d1hdgo1         159 VVDTLELL  166 (169)
T ss_dssp             HHHHHHHG
T ss_pred             HHHHHHHH
Confidence            88666543

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=100.00  E-value=1.9e-34  Score=231.39  Aligned_cols=165  Identities=36%  Similarity=0.634  Sum_probs=148.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHc---CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~---~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      +|||||+|||+|||.++|++.+   ++++++++|+++. +.+.++|||+|||+||.|. ..+....+ .+.++|+.++++
T Consensus         1 tikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~-~~~~~ayLlkyDS~hG~~~-~~v~~~~~-~l~i~g~~i~i~   77 (173)
T d1obfo1           1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLG-DPKTNAHLTRYDTAHGKFP-GTVSVNGS-YMVVNGDKIRVD   77 (173)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSS-CHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEE
T ss_pred             CeEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCC-ChHHHHHhhcccccCCCcC-ceEEeccc-eEEECCEEEEEE
Confidence            4899999999999999999875   5789999999974 7889999999999999998 77666655 788999999999


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC--CceEEeeeccccccCCCCeEEcCCCchh
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNEHEYKPELNIVSNASCTTN  157 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~--~~~~v~~vn~~~~~~~~~~Va~p~C~~t  157 (265)
                      ...+|++++|...++|+|++|||.+.+++.+..++++|+|+|++|++.++  +|.+|||+|.+.++++.++|||++    
T Consensus        78 ~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~~~~d~tiV~GVN~~~~~~~~~IISnAs----  153 (173)
T d1obfo1          78 ANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNAD----  153 (173)
T ss_dssp             CCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCTTSSEECCTTTSGGGCCTTCCEEECCC----
T ss_pred             ecCCHHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecCCCCCCcceEEEecchhhcCCCCCEEECCc----
Confidence            98999999999999999999999999999999999999999999999653  689999999999987779999986    


Q ss_pred             hhHhHHHHHHHhcCceEEEEEEEeecc
Q 024565          158 CLAPLAKVIHDKFGIVEGLMTTVHSIT  184 (265)
Q Consensus       158 a~~~~L~pL~~~~~i~~~~v~~v~~~s  184 (265)
                                ++|||+.+.+|++|+.+
T Consensus       154 ----------~~fgI~~g~mtTih~~t  170 (173)
T d1obfo1         154 ----------NEWGFSNRMLDTTVALM  170 (173)
T ss_dssp             ----------TTHHHHHHHHHHHHHHH
T ss_pred             ----------cccCceeeEEEeeheee
Confidence                      78888888778888765

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.94  E-value=2.7e-28  Score=196.69  Aligned_cols=157  Identities=18%  Similarity=0.242  Sum_probs=117.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheee-cccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKY-DSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||||+|+|+|||.++|++.++|++|+++|++...+.... +++++ ++.++.+. ......+. .+.+          
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~-~i~v----------   67 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAF-IAHRRGIRIYVPQQ-SIKKFEES-GIPV----------   67 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHH-HHHHTTCCEECCGG-GHHHHHTT-TCCC----------
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHH-HhcccCcceeccCc-cceecccc-ceec----------
Confidence            59999999999999999999999999999999986444333 33333 34444443 21111111 1111          


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-C--CceEEeeeccccccC--CCCeEEcCCCch
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D--APMFVVGVNEHEYKP--ELNIVSNASCTT  156 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~--~~~~v~~vn~~~~~~--~~~~Va~p~C~~  156 (265)
                        ..+++|...++|+|+||||.+.+++.++.++++|+ ++|+|++.+ +  +..+|+|+|++++.+  ..++|||.+|+|
T Consensus        68 --~g~~~~~~~~vDiViecTG~f~~~e~a~~hl~~G~-KvIi~~~~~~~~~~~t~V~GvN~~~~~~~~~~~vVSnAsctt  144 (178)
T d1b7go1          68 --AGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQR-NAIFQGGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVP  144 (178)
T ss_dssp             --CCCHHHHHHHCSEEEECCSTTHHHHHHHHHHHTTC-EEEECTTSCGGGSSCEECHHHHHHHHTTCSEEEECCTTTHHH
T ss_pred             --CCchhhhhhcCCEEEECCCCcCCHHHHHHHHHcCC-EEEEECCCCccccCCeEEeCcchHHhcCCCCCEEEeCCcccc
Confidence              12345655789999999999999999999999995 577776643 2  457999999887532  236999999999


Q ss_pred             hhhHhH------------HHHHHHhcCceEE
Q 024565          157 NCLAPL------------AKVIHDKFGIVEG  175 (265)
Q Consensus       157 ta~~~~------------L~pL~~~~~i~~~  175 (265)
                      ++++|.            ++.|.++|||+++
T Consensus       145 n~lap~~~~~~~~~~~~~~kv~~~~~gi~~g  175 (178)
T d1b7go1         145 ENIDAIRASMKLMSAEDSMRITNESLGILKG  175 (178)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHTTCCCS
T ss_pred             cccHHHHHHHHhhccccceeeeccccceeee
Confidence            999999            9999999999865

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=99.92  E-value=3.1e-28  Score=195.24  Aligned_cols=157  Identities=15%  Similarity=0.156  Sum_probs=110.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeec-ccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYD-SVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||||+|+|+|||.++|++.++|++++++|++...+. ...++++++ +.+..+.+........ .+.++|        
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~v~g--------   70 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDF-EARMALKKGYDLYVAIPERVKLFEKA-GIEVAG--------   70 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSH-HHHHHHHTTCCEEESSGGGHHHHHHT-TCCCCE--------
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHH-HHHHHHhcCCceEecccccceeeccc-CcccCC--------
Confidence            48999999999999999999999999999999975332 233445444 2222222110000000 011111        


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC--CceEEeeeccccccC-CCCeEEcCCCchhh
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNEHEYKP-ELNIVSNASCTTNC  158 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~--~~~~v~~vn~~~~~~-~~~~Va~p~C~~ta  158 (265)
                          +..|...++|+|+||||.+.+.+.++.++++|+|+++.|++.++  ...+|||+|++++.+ +..+|+|+||+|+|
T Consensus        71 ----~~~~~~~~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~~~~~~~~~~~v~GvN~~~~~~~~~~ivS~aSCTTNc  146 (171)
T d1cf2o1          71 ----TVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDA  146 (171)
T ss_dssp             ----EHHHHHHTCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCHHHHSCEECHHHHHHHHTTCSEEEECTHHHHHHH
T ss_pred             ----ChhHhhcCCCEEEEccCCCCCHHHHHHHHHcCCCEEEECCCCccCCCceeEeccChhhhcCCCCcEEEECCchHHh
Confidence                12233368999999999999999999999999864434444433  346899999877654 34589999999999


Q ss_pred             hHhHHHHHHHhcCce
Q 024565          159 LAPLAKVIHDKFGIV  173 (265)
Q Consensus       159 ~~~~L~pL~~~~~i~  173 (265)
                      ++|.+++|+++||+.
T Consensus       147 lapv~kvl~~~fGiv  161 (171)
T d1cf2o1         147 VRAILEMEEDKYKSI  161 (171)
T ss_dssp             HHHHTTSCSCHHHHH
T ss_pred             HHHHHHHHHHHcCch
Confidence            999999999999864

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=2.6e-26  Score=184.57  Aligned_cols=142  Identities=15%  Similarity=0.209  Sum_probs=105.2

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      |+||||+|+ ||+|++++|+|.+||++|+..+++.+..++.+.      +.++++. ..               . .+..
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~------~~~p~~~-~~---------------~-~~~~   57 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLE------EIFPSTL-EN---------------S-ILSE   57 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHH------HHCGGGC-CC---------------C-BCBC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCccc------ccCchhh-cc---------------c-cccc
Confidence            599999999 999999999999999999999998876665432      3344332 00               0 1111


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC-CC-C----------------CceEEee---eccc
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-SK-D----------------APMFVVG---VNEH  140 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~-~~-~----------------~~~~v~~---vn~~  140 (265)
                      .+++++   ..++|+||+|+|++.+.+.+++  ..|++.+.+|++ +- +                ...++||   +|++
T Consensus        58 ~~~~~~---~~~~dvvf~a~p~~~s~~~~~~--~~~~~VIDlSadfRl~~~~~y~~~Y~~~h~~~~~~~~~YGlpE~~r~  132 (176)
T d1vkna1          58 FDPEKV---SKNCDVLFTALPAGASYDLVRE--LKGVKIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHRE  132 (176)
T ss_dssp             CCHHHH---HHHCSEEEECCSTTHHHHHHTT--CCSCEEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHHH
T ss_pred             cCHhHh---ccccceEEEccccHHHHHHHHh--hccceEEecCccccccchhhHHHhhccccccccccceeecCcHHhHH
Confidence            233333   2479999999999999988875  367744445887 21 1                1136776   7899


Q ss_pred             cccCCCCeEEcCCCchhhhHhHHHHHHHhcCce
Q 024565          141 EYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV  173 (265)
Q Consensus       141 ~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~  173 (265)
                      ++++ +++|+|||||+|+++++|+||+..+||.
T Consensus       133 ~i~~-~~~IanPgC~~t~~~laL~PL~~~~gi~  164 (176)
T d1vkna1         133 EIKN-AQVVGNPGLVKGASGQAVQNMNIMFGLD  164 (176)
T ss_dssp             HHTT-CSEEECCCTTTTTHHHHHHHHHHHTTCC
T ss_pred             HHhc-CCEEEccCcHHHHHHHHHhhHHHhcCCc
Confidence            9984 8999999999999999999999988874

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.92  E-value=8.5e-27  Score=189.37  Aligned_cols=146  Identities=14%  Similarity=0.130  Sum_probs=104.7

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      ++++||||+|+ ||+|++++|+|.+||++|++.+++.+..++.+.      +.++.+. .    .          .....
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~------~~~~~~~-~----~----------~~~~~   61 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFG------SVFPHLI-T----Q----------DLPNL   61 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHH------HHCGGGT-T----S----------CCCCC
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccc------ccccccc-c----c----------ccccc
Confidence            45799999999 999999999999999999999998765565432      2233322 0    0          00111


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC-C-C-------------C----CceEEee---e
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-S-K-------------D----APMFVVG---V  137 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~-~-~-------------~----~~~~v~~---v  137 (265)
                      .  ...+..|  .++|+||+|+|++.+.++++.+.+.+. .++.+++ . .             .    .+.++||   +
T Consensus        62 ~--~~~~~~~--~~~Dvvf~alp~~~s~~~~~~l~~~~~-~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vyglpE~  136 (183)
T d2cvoa1          62 V--AVKDADF--SNVDAVFCCLPHGTTQEIIKGLPQELK-IVDLSADFRLRDINEYAEWYGHSHRAPELQQEAVYGLTEV  136 (183)
T ss_dssp             B--CGGGCCG--GGCSEEEECCSSSHHHHHHHTSCSSCE-EEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHH
T ss_pred             h--hhhhhhh--cccceeeeccccchHHHHHHHHHhcCc-ccccchhhhccccchheeeccccccchhhhccccccCchH
Confidence            1  1111222  679999999999999999988777764 3334544 1 0             0    1346665   6


Q ss_pred             ccccccCCCCeEEcCCCchhhhHhHHHHHHHhcCce
Q 024565          138 NEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV  173 (265)
Q Consensus       138 n~~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~  173 (265)
                      |++++++ +++|+|||||+|+++++|+||+..+|+.
T Consensus       137 ~r~~i~~-a~~IANPgC~~t~~~laL~PL~~~~gli  171 (183)
T d2cvoa1         137 LRNEIRN-ARLVANPGLVKGASGQAVQNLNLMMGLP  171 (183)
T ss_dssp             HHHHHHH-CSEEECCCTTTTTHHHHHHHHHHHHTSC
T ss_pred             HHHHHhh-CCEeeCCCcHHHHHHHhhhhHHHhcCCC
Confidence            8999984 8999999999999999999997766664

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.2e-25  Score=174.01  Aligned_cols=136  Identities=13%  Similarity=0.155  Sum_probs=105.0

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHH--cCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            2 GKVKIGINGF-GRIGRLVARVIL--QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~--~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      ++|||||+|+ ||+|++++|+|.  +||.+++..+.+.+..++                          .+...+..+.+
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk--------------------------~i~~~~~~~~~   54 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ--------------------------RMGFAESSLRV   54 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC--------------------------EEEETTEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCc--------------------------ceeeccccchh
Confidence            4799999999 999999999996  689999998887653332                          23333334433


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC-C-CCCceEEeeeccccccC--CCCeEEcCCC
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-S-KDAPMFVVGVNEHEYKP--ELNIVSNASC  154 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~-~-~~~~~~v~~vn~~~~~~--~~~~Va~p~C  154 (265)
                      .   +++..+|  .++|+||+|+|++.+.++++.+.++|++.+..|++ + ++.+..+|++|++.++.  ..++|+||||
T Consensus        55 ~---~~~~~~~--~~~d~vf~a~p~~~s~~~~~~~~~~g~~VID~Ss~fR~~~~~~~vpevn~~~l~~~~~~~iIANPgC  129 (144)
T d2hjsa1          55 G---DVDSFDF--SSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSVAPPVMVSVNAERLASQAAPFLLSSPAA  129 (144)
T ss_dssp             E---EGGGCCG--GGCSEEEECSCHHHHHHHHHHHHHTTCEEEETTCTTTTTTSCBCCHHHHGGGGGGSCSSCEEECCCH
T ss_pred             c---cchhhhh--ccceEEEecCCcchhhhhccccccCCceEEeechhhcccccccccccccHHHHHhccCCCEEccCcH
Confidence            2   2333434  57999999999999999999999999943334666 3 33566789999988863  4679999999


Q ss_pred             chhhhHhHHHHHHH
Q 024565          155 TTNCLAPLAKVIHD  168 (265)
Q Consensus       155 ~~ta~~~~L~pL~~  168 (265)
                      ++|+++++|.||+.
T Consensus       130 ~t~~~ll~L~~~h~  143 (144)
T d2hjsa1         130 LNAVLLGELLIKHY  143 (144)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhhhcc
Confidence            99999999999975

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.92  E-value=4.1e-25  Score=174.52  Aligned_cols=141  Identities=18%  Similarity=0.243  Sum_probs=107.9

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            4 VKIGINGF-GRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      .||||+|+ ||+|+|++|+|.+|  |..++..+++.+..+.                          .+...........
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~--------------------------~~~~~~~~~~~~~   55 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGK--------------------------SLKFKDQDITIEE   55 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTC--------------------------EEEETTEEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccc--------------------------cccccCCcccccc
Confidence            58999999 99999999999999  6788887776543332                          1222222233321


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccCCCCeEEcCCCchh
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKPELNIVSNASCTTN  157 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~t  157 (265)
                         ..+.++  .++|++|+|+|++.+.++++.+.+.|++.+..|++   .++.|..+|++|++.++...++|+||||++|
T Consensus        56 ---~~~~~~--~~~d~~f~~~~~~~s~~~~~~~~~~~~~VIDlSsdfR~~~~~~~~~pe~n~~~~~~~~~iIAnPgC~tt  130 (154)
T d2gz1a1          56 ---TTETAF--EGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPNAAWN  130 (154)
T ss_dssp             ---CCTTTT--TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGGGCCSEEECCCTHHH
T ss_pred             ---cchhhh--hhhhhhhhccCccchhhHHhhhccccceehhcChhhhccCCcccccchhhHHHhcCcCceEECCCCHHH
Confidence               222223  57999999999999999999999999955555777   3457889999999998865679999999988


Q ss_pred             hhHhHHHHHHHhcCceEEE
Q 024565          158 CLAPLAKVIHDKFGIVEGL  176 (265)
Q Consensus       158 a~~~~L~pL~~~~~i~~~~  176 (265)
                      ++++ |.||+++++|++..
T Consensus       131 ~i~~-l~PL~~~~lik~~~  148 (154)
T d2gz1a1         131 SVQI-AETLHERGLVRPTA  148 (154)
T ss_dssp             HHHH-HHHHHHTTCCSCCS
T ss_pred             HHHH-HHHHHHhcCCCccc
Confidence            8876 79999998887643

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=8.5e-27  Score=187.05  Aligned_cols=158  Identities=17%  Similarity=0.148  Sum_probs=113.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeec--ccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYD--SVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ++||||+|+|+|||.++|++.++|++|+++|++...+. ...++++++  ..+..+. .. .....     ++  +    
T Consensus         2 ~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~-~~~~l~~~~~~~~~~~~~-~~-~~~~~-----~~--~----   67 (172)
T d2czca2           2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF-EAYRAKELGIPVYAASEE-FI-PRFEK-----EG--F----   67 (172)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH-HHHHHHHTTCCEEESSGG-GH-HHHHH-----HT--C----
T ss_pred             cEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChH-HHHHhhhcCceeeccccc-ce-eeecc-----cC--c----
Confidence            69999999999999999999999999999999975332 233344332  1111111 00 00000     00  0    


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC--CceEEeeeccccccCCCCe--EEcCCCch
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNEHEYKPELNI--VSNASCTT  156 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~--~~~~v~~vn~~~~~~~~~~--Va~p~C~~  156 (265)
                       ....+++|...++|+|+||||.+.+.+.++.++++|+|++++|++..+  ++.+|||+|++++.+ .+.  |++.||+|
T Consensus        68 -~~~~~~~~~~~~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~~~~~~t~v~GvNh~~~~~-~~~~~v~scsctT  145 (172)
T d2czca2          68 -EVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALG-KNYVRVVVIPENI  145 (172)
T ss_dssp             -CCSCBHHHHHTTCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCGGGSSEEECHHHHGGGGTT-CSEEEECTHHHHH
T ss_pred             -cccchhhhhhccCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCCcccCCCeeEecccchhhcC-CCceEEEecCchH
Confidence             011233344468999999999999999999999999987777887544  578999999887654 344  44445599


Q ss_pred             hhhHhHHHHHHHhcCceEEE
Q 024565          157 NCLAPLAKVIHDKFGIVEGL  176 (265)
Q Consensus       157 ta~~~~L~pL~~~~~i~~~~  176 (265)
                      +|++|.++.|.+.|||+++.
T Consensus       146 n~lap~~kvld~~~gIe~~~  165 (172)
T d2czca2         146 DAIRAMFELADKWDSIKKTN  165 (172)
T ss_dssp             HHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcCeeEee
Confidence            99999999999999998753

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.91  E-value=6.6e-25  Score=177.54  Aligned_cols=147  Identities=16%  Similarity=0.139  Sum_probs=104.4

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccC---hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFIT---TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+||||+|+ ||+|+|++|+|.+||++++..+.+.+..   ++.+      ...++.+. +.   . .  +     ....
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~------~~~~~~~~-~~---~-~--~-----~~~~   62 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLI------SDLHPQLK-GI---V-D--L-----PLQP   62 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBH------HHHCGGGT-TT---C-C--C-----BEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccc------cccccccc-cc---c-c--c-----cccc
Confidence            599999999 9999999999999999999999765321   2221      23343333 10   0 0  0     1111


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCC--CC-----------------CceEEee---
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS--KD-----------------APMFVVG---  136 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~--~~-----------------~~~~v~~---  136 (265)
                      .  .+.+..   ..++|+||+|+|++.+.+.++.+.+.|++.+.+|++.  .+                 ...++||   
T Consensus        63 ~--~~~~~~---~~~~dvvf~alp~~~s~~~~~~~~~~~~~vIDlSadfRl~~~~~~~~~y~~~~~~~~~~~~~vYglpE  137 (179)
T d2g17a1          63 M--SDVRDF---SADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTHQYPELLEQAVYGLAE  137 (179)
T ss_dssp             E--SCGGGT---CTTCCEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHHCSCCSCHHHHHHCEECCGG
T ss_pred             c--hhhhhh---hcccceeeccccchhHHHHhhhhhhcCceeecccccccccccccccccccccccccccccccccCchh
Confidence            1  222222   3679999999999999999999999999555557772  11                 1246776   


Q ss_pred             eccccccCCCCeEEcCCCchhhhHhHHH-HHHHhcCce
Q 024565          137 VNEHEYKPELNIVSNASCTTNCLAPLAK-VIHDKFGIV  173 (265)
Q Consensus       137 vn~~~~~~~~~~Va~p~C~~ta~~~~L~-pL~~~~~i~  173 (265)
                      +|++++++ +++|+|||||+|+++++|+ ||.+.+.|+
T Consensus       138 ~~r~~i~~-~~~IAnPGCyaTa~~laL~~pl~~~gli~  174 (179)
T d2g17a1         138 WNVDKLNT-ANLIAVPGLLKGAAAQAVQCANIRFGFAE  174 (179)
T ss_dssp             GCHHHHTT-CSEEECCCTTTTTHHHHHHHHHHHHTCCT
T ss_pred             hhHHHHhc-CCEEEcCCchHHHHHHHHHhHHHHcCCCC
Confidence            68899984 8999999999999999996 677764443

>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=99.87  E-value=1.8e-22  Score=157.98  Aligned_cols=112  Identities=82%  Similarity=1.204  Sum_probs=108.2

Q ss_pred             CchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEE
Q 024565          154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM  233 (265)
Q Consensus       154 C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~  233 (265)
                      |+++|++|.++.|.++|||+.+.+|++|++++.|.++|++.+.++|.+|..+.|++|..+|.++++.+++|+|.|++...
T Consensus         1 CTTNclaP~~kvl~~~fgI~~g~mTTiHayT~~Q~l~D~~~~~~~Rr~Raa~~niIPttTgAakAv~~vlP~L~gkl~g~   80 (164)
T d1u8fo2           1 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGM   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTCGGGGSBTTTCCEEEECCTTTTHHHHSGGGTTSEEEE
T ss_pred             ChhHHHHHHHHHHHhhcCeeEEEEEeeecccCccccccccccCccccCCCCcCcceeccccHHHHHHHhChhhcCCccce
Confidence            99999999999999999999999999999999999999987777899999999999999999999999999999999999


Q ss_pred             EEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          234 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       234 ~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++|||+..|.+.+++++++++++.|||+++|+
T Consensus        81 a~RVPt~~vS~vDlt~~l~k~~t~eevn~~l~  112 (164)
T d1u8fo2          81 AFRVPTANVSVVDLTCRLEKPAKYDDIKKVVK  112 (164)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             EEecCCCCcceeeEEEEEcCcCCHHHHHHHHH
Confidence            99999999999999999999999999999874

>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=99.87  E-value=5.7e-22  Score=155.29  Aligned_cols=111  Identities=63%  Similarity=0.961  Sum_probs=107.6

Q ss_pred             CchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEE
Q 024565          154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM  233 (265)
Q Consensus       154 C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~  233 (265)
                      |+++|++|.++.|+++|||+.+.+|++|++++.|+.+|++ +.+++.+|..+.|++|..+|.++.+.+++|+|+|++...
T Consensus         1 CTTNclaP~~kvl~~~fgI~~g~mTTvHa~T~~Q~l~D~~-~~d~Rr~Raa~~niIPtsTgAakav~~vlP~L~gkl~g~   79 (163)
T d3cmco2           1 CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLP-HKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGM   79 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCC-CSSTTTTSBTTTCCEEEECSHHHHHHHHCGGGTTTEEEE
T ss_pred             ChhHHHHHHHHHHHhhcCeeEEEEEeeccccCcccCCCCC-CcchhccchHhhCCCCccccHHHHHHHhhHHhCCCcceE
Confidence            9999999999999999999999999999999999999987 579999999999999999999999999999999999999


Q ss_pred             EEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          234 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       234 ~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++|||+..|.+.+++++++++++.|||+++|+
T Consensus        80 a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~k  111 (163)
T d3cmco2          80 AMRVPTPNVSVVDLVAELEKEVTVEEVNAALK  111 (163)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             EEecCCCcceeEEEEEEecCcCCHHHHHHHHH
Confidence            99999999999999999999999999999874

>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.87  E-value=7.5e-22  Score=154.95  Aligned_cols=111  Identities=57%  Similarity=0.894  Sum_probs=107.6

Q ss_pred             CchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEE
Q 024565          154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM  233 (265)
Q Consensus       154 C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~  233 (265)
                      |+++|++|.++.|+++|||+.+.+|++|++++.|..+|++ +.+++.+|..+.|++|..+|.++.+.+++|+|++++...
T Consensus         1 CTTN~laP~~kvl~~~fgI~~g~mtTvHa~T~~Q~l~D~~-~~d~rr~Raa~~niIPt~Tga~kai~~vlP~L~gki~g~   79 (163)
T d1rm4a2           1 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGI   79 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCC-CSSTTTTSCTTTCCEEECCCHHHHHHHHCGGGTTTEEEE
T ss_pred             ChhHhHHHHHHHHHHhCCeeEEEEEEeccccCCcCcccCC-CCcccccchhhcccCcCcccHHHHHHHhChhhcCCcceE
Confidence            9999999999999999999999999999999999999985 689999999999999999999999999999999999999


Q ss_pred             EEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          234 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       234 ~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++|||+..|.+.+++++++++++.|||+++|+
T Consensus        80 a~RVPt~nvS~vDl~~~l~k~~t~eein~~~~  111 (163)
T d1rm4a2          80 ALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFR  111 (163)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             EEecCCCCceeEEEEEeccCCCCHHHHHHHHH
Confidence            99999999999999999999999999999873

>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.87  E-value=4.3e-22  Score=157.69  Aligned_cols=113  Identities=70%  Similarity=1.060  Sum_probs=108.5

Q ss_pred             CCchhhhHhHHHHH-HHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCcee
Q 024565          153 SCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLT  231 (265)
Q Consensus       153 ~C~~ta~~~~L~pL-~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~  231 (265)
                      +|+++|++|.++.| +++|||+.+.+|++|+++++|+.+|++.+.+++.+|..+.|++|..+|.++.+.+++|+|.|++.
T Consensus         1 SCTTNclaP~~kvL~~~~fgI~~g~mtTvHa~T~~Q~~lD~~~~~d~Rr~Raa~~nIIPtsTgAakav~~vlP~L~gKi~   80 (169)
T d1k3ta2           1 SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGKLT   80 (169)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCTTSBSSSCCCSSCTGGGSBGGGCCEEEECSHHHHHHHHSGGGTTTEE
T ss_pred             CcHHHHHHHHHHHhhccccceeEEEEEEeccccCCCcccccccCCCCcCccccccccccccchHHHHHHHhccccCCCcc
Confidence            79999999999998 78899999999999999999999998877899999999999999999999999999999999999


Q ss_pred             EEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          232 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       232 ~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ..++|||+..|.+.+++++++++++.|||+++|+
T Consensus        81 g~a~RVPt~nvS~vDLt~~l~k~~t~eein~~~~  114 (169)
T d1k3ta2          81 GMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALK  114 (169)
T ss_dssp             EEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHH
T ss_pred             ceeecccccccceeeeeeeccccchhhHHHHHHH
Confidence            9999999999999999999999999999999873

>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=99.87  E-value=7.8e-22  Score=155.12  Aligned_cols=112  Identities=51%  Similarity=0.842  Sum_probs=108.0

Q ss_pred             CCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeE
Q 024565          153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTG  232 (265)
Q Consensus       153 ~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~  232 (265)
                      +|+++|++|.++.|+++|||+.+.+|++|++++.|..+|.+ +.+++.+|..+.|++|..+|.++.+.+++|+|+|++.+
T Consensus         1 SCTTN~laP~~kvl~~~fgI~~g~mtTvHa~t~~Q~l~D~~-~~d~r~~Raa~~niIP~sTgAakav~~viP~L~gki~g   79 (162)
T d1obfo2           1 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTDVY-HEDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNG   79 (162)
T ss_dssp             CHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSCCC-CSSTTTTSCTTTCCEEEECCHHHHHHHHCGGGTTSEEE
T ss_pred             CcHHHHHHHHHHHHHhhcCeeEEEEEEeecccccccccccc-cccccccccccceeeeecCCchhhHhHhChhhCCCCCc
Confidence            79999999999999999999999999999999999999986 57999999999999999999999999999999999999


Q ss_pred             EEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          233 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       233 ~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      .++|||+..+.+.+++++++++++.|||+++|+
T Consensus        80 ~a~RVPt~~vS~vDLt~~l~k~~t~eein~~l~  112 (162)
T d1obfo2          80 YAIRVPTINVSIVDLSFVAKRNTTVEEVNGILK  112 (162)
T ss_dssp             EEEEESCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             eEEeccccCcceeeEEEEecCCCCHHHHHHHHH
Confidence            999999999999999999999999999998873

>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=99.86  E-value=1.1e-21  Score=154.05  Aligned_cols=111  Identities=52%  Similarity=0.820  Sum_probs=107.4

Q ss_pred             CchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEE
Q 024565          154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM  233 (265)
Q Consensus       154 C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~  233 (265)
                      |+++|++|.++.|.++|||+.+.+|++|+++++|+.+|++ +.+++.+|..+.|++|..+|.++.+.+++|+|.|++...
T Consensus         1 CTTNclaP~~kil~~~fgI~~g~~tTiH~~t~~Q~l~D~~-~~d~rr~Rsa~~niIPt~Tgaakai~~vlP~L~gki~g~   79 (162)
T d2g82a2           1 CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLP-HKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGM   79 (162)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSBSSSCC-CSSTTTTSBGGGCCEEECCCHHHHHHHHCGGGTTSEEEE
T ss_pred             ChhHhHHHHHHHHHhhcCeeEEEEEeeccccCccccCCCC-CCCccccchhhcccCcccCccchhhchhhHhhCCCceeE
Confidence            9999999999999999999999999999999999999986 479999999999999999999999999999999999999


Q ss_pred             EEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          234 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       234 ~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++|||+..|.+.+++++++++++.|||+++|+
T Consensus        80 a~RVPt~nvS~vDl~~~l~k~~s~eeIn~~lk  111 (162)
T d2g82a2          80 ALRVPTATGSISDITALLKREVTAEEVNAALK  111 (162)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             EEeecccccceEEEEEEecCcCCHHHHHHHHH
Confidence            99999999999999999999999999998873

>d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.79  E-value=1.9e-19  Score=145.14  Aligned_cols=111  Identities=12%  Similarity=0.186  Sum_probs=90.7

Q ss_pred             Cchhh-hHhHHHHHHHhcCceEEEEEEEeecccccc------------ccCCCCCCcccCCccCCCceeecCC-----Ch
Q 024565          154 CTTNC-LAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSSKDWRGGRAASFNIIPSST-----GA  215 (265)
Q Consensus       154 C~~ta-~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~------------~~d~~~~~~~~~~~~~a~n~~p~~~-----~~  215 (265)
                      |++++ ++++|+||++.++|+++.++++|++||+++            .+++...+...|+++++||++|+..     |.
T Consensus         1 Cs~~~qL~~aL~PL~~~~~i~rv~vsTyQavSGaG~~gv~eL~~Qt~~ll~~~~~~~~~fp~~iafNviP~ig~~~~~g~   80 (190)
T d2hjsa2           1 CAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGH   80 (190)
T ss_dssp             CHHHHHHHHHHHHHTTTCCEEEEEEEEEECGGGGCHHHHHHHHHHHHHHHTTCCCCCSSSSSCCTTCCBSSSSCBCTTSC
T ss_pred             ChhHHHHHHHHHHHHHhhCceEEEEEEEechhhcCHHHHHHHHHHHHHHhccccccccccchhhcccccccccccccccc
Confidence            88765 999999999999999999999999999743            1233333456789999999999984     44


Q ss_pred             hhHHHh-------hccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHh
Q 024565          216 AKAVGK-------VLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAI  264 (265)
Q Consensus       216 ~~~~~~-------~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~  264 (265)
                      .+|+.|       ++..-...++.||+||||++||...++++|+++++.+++.++|
T Consensus        81 t~EE~K~~~Et~KIL~~~~l~vs~TcvRVPV~~gHs~sv~ve~~~~i~~~e~~~~l  136 (190)
T d2hjsa2          81 SAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVL  136 (190)
T ss_dssp             BHHHHHHHHHHHHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHH
T ss_pred             chhhhhhhhhhhhhccCccccceeeeEEeehhhcchhheeeeeecCccHHHHHHHH
Confidence            455544       4433234699999999999999999999999999999999887

>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.7e-19  Score=148.87  Aligned_cols=112  Identities=15%  Similarity=0.132  Sum_probs=89.9

Q ss_pred             CCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccc-cCC------------------------------------CCC
Q 024565          153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-VDG------------------------------------PSS  195 (265)
Q Consensus       153 ~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~-~d~------------------------------------~~~  195 (265)
                      +|+++.++++|+||+++|+|+++.++|+|++||++.. +++                                    ...
T Consensus         1 NCst~~l~~aL~pL~~~~~i~rv~vsTYQAvSGaG~~~v~EL~~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (221)
T d1t4ba2           1 NCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGEL   80 (221)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHTHHHHTCTTCCHHHHHHHHHHHHHHTCS
T ss_pred             CcHHHHHHHHHHHHHHHhCceEEEEEhhhhhhhhcHHHHHHHHHHHHhhhccccccccCchhhccchhhhhhhhcccccC
Confidence            6999999999999999999999999999999998421 100                                    011


Q ss_pred             CcccCCccCCCceeecCC-----ChhhHHH-------hhccCCC-CceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHH
Q 024565          196 KDWRGGRAASFNIIPSST-----GAAKAVG-------KVLPALN-GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKA  262 (265)
Q Consensus       196 ~~~~~~~~~a~n~~p~~~-----~~~~~~~-------~~l~e~~-~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~  262 (265)
                      ....|+++++||++|+..     |..+|+.       |+|..-+ .+++.||+||||++||..+++++|+++++.+|+++
T Consensus        81 ~~~~f~~~iAfNvIP~ig~~~e~G~t~EE~K~~~EtrKIL~~~~~i~VsaTcVRVPV~~gHsesv~ve~~~~i~~~ev~~  160 (221)
T d1t4ba2          81 PVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEE  160 (221)
T ss_dssp             CCTTTSSCCTTCEESCCSCBCTTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCHHHHHH
T ss_pred             CccccccccccccccCCccccccceechhHHHHHHHHhhhccccccceeeEEeeeehhccchheeeeehhhccchHHHHH
Confidence            234688999999999994     4445544       4553212 35899999999999999999999999999999988


Q ss_pred             Hh
Q 024565          263 AI  264 (265)
Q Consensus       263 ~~  264 (265)
                      ++
T Consensus       161 ~L  162 (221)
T d1t4ba2         161 LL  162 (221)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=99.78  E-value=1.6e-19  Score=149.06  Aligned_cols=112  Identities=18%  Similarity=0.163  Sum_probs=90.5

Q ss_pred             CCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccc-cC------------------------------------CCCC
Q 024565          153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-VD------------------------------------GPSS  195 (265)
Q Consensus       153 ~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~-~d------------------------------------~~~~  195 (265)
                      +|+++.++++|+||+++++|+++.++|+|++||++.. ++                                    ....
T Consensus         1 NCsT~~l~~aL~pL~~~~~i~rv~vsTYQAvSGaG~~gv~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (222)
T d1mb4a2           1 NCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANPASSILDIDKKVAETMRSGSF   80 (222)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHSTTS
T ss_pred             CcHHHHHHHHHHHHHHHhCeeEEEEeehhhhhhhcHHHHHHHHHHHHhhhccchhhhcCcchhhccchhhhhhhcccCCC
Confidence            6999999999999999999999999999999998431 10                                    0011


Q ss_pred             CcccCCccCCCceeecCC-----ChhhHHH-------hhcc--CCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHH
Q 024565          196 KDWRGGRAASFNIIPSST-----GAAKAVG-------KVLP--ALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIK  261 (265)
Q Consensus       196 ~~~~~~~~~a~n~~p~~~-----~~~~~~~-------~~l~--e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~  261 (265)
                      ....|+++++||++|+..     |..+|+.       |+|.  .-..+++.||+||||++||..+++++|+++++.+|++
T Consensus        81 ~~~~f~~~iAfNviP~i~~~~~~G~t~EE~K~~~EtrKIL~~~d~~i~VsaTCVRVPV~~gHsesV~ve~~~~is~~e~~  160 (222)
T d1mb4a2          81 PTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIE  160 (222)
T ss_dssp             SCTTTSSCCTBSEESCCSCBCSSSCBHHHHHHHHHHHHHHTCTTSCCCEECCCCEESBSSEEEEEEEEEESSCCCHHHHH
T ss_pred             ccccccccchhcccccccccccCCcccchHHHHHHHHHHhcCCCcccchhHHHHhhhhhhheeeeEEEEeeecccHHHHH
Confidence            244688999999999983     5555544       4542  2224688999999999999999999999999999999


Q ss_pred             HHh
Q 024565          262 AAI  264 (265)
Q Consensus       262 ~~~  264 (265)
                      ++|
T Consensus       161 ~~L  163 (222)
T d1mb4a2         161 EMI  163 (222)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            987

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=99.77  E-value=1.2e-20  Score=146.65  Aligned_cols=129  Identities=16%  Similarity=0.165  Sum_probs=91.3

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHc---CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            4 VKIGINGF-GRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~---~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      |||||+|+ ||+|++++++|.+   ||.+++..+.+....+...           .+.               ++...+.
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~-----------~~~---------------~~~~~~~   54 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAP-----------NFG---------------KDAGMLH   54 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCC-----------CSS---------------SCCCBCE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccccc-----------ccC---------------Ccceeee
Confidence            58999999 9999999998764   5678888777654223210           011               0111111


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE--cCC---CCCCceEEeeeccccccC-----CCCe-
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP---SKDAPMFVVGVNEHEYKP-----ELNI-  148 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi--s~~---~~~~~~~v~~vn~~~~~~-----~~~~-  148 (265)
                      ...+.+.+    .++|+||+|+|++.+.++++++++.|++.+||  |++   +++.|+.+|++|++.++.     .... 
T Consensus        55 ~~~~~~~~----~~~DvvF~alp~~~s~~~~~~l~~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~k~~~  130 (147)
T d1mb4a1          55 DAFDIESL----KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFV  130 (147)
T ss_dssp             ETTCHHHH----TTCSEEEECSCHHHHHHHHHHHHHTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccchhhh----ccccEEEEecCchHHHHHhHHHHHcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCCccee
Confidence            11222222    57999999999999999999999999874555  777   456899999999988773     1234 


Q ss_pred             --EEcCCCchhhhHhH
Q 024565          149 --VSNASCTTNCLAPL  162 (265)
Q Consensus       149 --Va~p~C~~ta~~~~  162 (265)
                        +++|+|.+.++.++
T Consensus       131 ~~~~~p~~~~~~~~~a  146 (147)
T d1mb4a1         131 GGAAEPLRRTLRIILA  146 (147)
T ss_dssp             ECTHHHHHHHHHHHHH
T ss_pred             eeccCcCHhHhHHHhc
Confidence              49999999888764

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=99.76  E-value=1.3e-19  Score=142.80  Aligned_cols=139  Identities=19%  Similarity=0.156  Sum_probs=97.2

Q ss_pred             CC-ccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            1 MG-KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         1 m~-~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+ ++||||+|+|.+|++ ++++|.++|.+|++++++++.......+-.                ..|         +++
T Consensus         1 M~kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~----------------~~~---------i~~   55 (157)
T d1nvmb1           1 MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ----------------RMG---------VTT   55 (157)
T ss_dssp             CCSCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH----------------HTT---------CCE
T ss_pred             CCCCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhh----------------hcC---------Ccc
Confidence            54 689999999999986 568888899999999998754332211000                001         011


Q ss_pred             Eec--CC-CCCCCcccccccEEEEecCCcccHH--hHHHHHhCCCCeEEE--cCCCCCCceEEeeeccccccCC--CCeE
Q 024565           79 FGV--RN-PEEIPWAETGAEYVVESTGVFTDKD--KAAAHLKGGAKKVII--SAPSKDAPMFVVGVNEHEYKPE--LNIV  149 (265)
Q Consensus        79 ~~~--~~-~~~~~~~~~~~DvV~~at~~~~~~~--~~~~~~~~G~~~vvi--s~~~~~~~~~v~~vn~~~~~~~--~~~V  149 (265)
                      ...  ++ .+..+  ..++|+||+|||++.+.+  +..+++++|+  +|+  |. ..++|++||++|.+++...  .++|
T Consensus        56 ~~~~~d~l~~~~~--~~~iDiVf~ATpag~h~~~~~~~~aa~~G~--~VID~s~-a~~vplvVPevN~~~~~~~~n~nli  130 (157)
T d1nvmb1          56 TYAGVEGLIKLPE--FADIDFVFDATSASAHVQNEALLRQAKPGI--RLIDLTP-AAIGPYCVPVVNLEEHLGKLNVNMV  130 (157)
T ss_dssp             ESSHHHHHHHSGG--GGGEEEEEECSCHHHHHHHHHHHHHHCTTC--EEEECST-TCSSCBCCHHHHTTTTTTCSEEECC
T ss_pred             cccceeeeeeccc--ccccCEEEEcCCchhHHHhHHHHHHHHcCC--EEEEccc-cccceEEccCcCHHHHhcCCCCCeE
Confidence            100  00 11111  257999999999988766  4566789998  555  43 4579999999999888752  3678


Q ss_pred             EcCCCchhhhHhHHHHHHHh
Q 024565          150 SNASCTTNCLAPLAKVIHDK  169 (265)
Q Consensus       150 a~p~C~~ta~~~~L~pL~~~  169 (265)
                      +||||.+..++.+|+|+++-
T Consensus       131 tc~~~~tip~~~al~~~~~~  150 (157)
T d1nvmb1         131 TYAGNLDIMTSAALATAERM  150 (157)
T ss_dssp             CTCHHHHHHHHHHHHHHHHH
T ss_pred             ecCchHHHHHHHHHHHHHHH
Confidence            89999999999999998873

>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=99.71  E-value=2.4e-17  Score=130.52  Aligned_cols=99  Identities=26%  Similarity=0.338  Sum_probs=84.8

Q ss_pred             CCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCCh----hhHHHhhccCCCC
Q 024565          153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGA----AKAVGKVLPALNG  228 (265)
Q Consensus       153 ~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~----~~~~~~~l~e~~~  228 (265)
                      ||+|++++++|+||++.|||+++.++++|++++.+           ..++..++|++|+..+.    ..+..+++   ..
T Consensus         1 SCtT~~l~~~lkpL~~~fgI~~~~vtT~qa~s~~~-----------~~~~~~~~niip~~~~~~~~~~~e~~kil---~~   66 (165)
T d1cf2o2           1 SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGADPA-----------QVSKGPINAIIPNPPKLPSHHGPDVKTVL---DI   66 (165)
T ss_dssp             CHHHHHHHHHHHHHHHHHCEEEEEEEEEEESSCTT-----------CTTCCCSSCCEESSSSSSCTHHHHHHTTS---CC
T ss_pred             CChHHHHHHHHHHHHHHcCceEEEEEEEECCcCCc-----------cccccccccccCCCcHHHHHHHHHhhhhc---CC
Confidence            79999999999999999999999999999987643           23567899999987542    23455554   56


Q ss_pred             ceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          229 KLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       229 ~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      +++.+++|||+++||+.+++++|+++++.||++++|+
T Consensus        67 ~i~~tavRVPv~~~H~~~v~v~~~~~~t~eev~~~l~  103 (165)
T d1cf2o2          67 NIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFE  103 (165)
T ss_dssp             CEEEEEEEESCCSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             cEEEEEEecCccceEEEEEEEEECCcCCHHHHHHHHH
Confidence            7999999999999999999999999999999999873

>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.71  E-value=3.5e-18  Score=139.48  Aligned_cols=111  Identities=16%  Similarity=0.252  Sum_probs=88.3

Q ss_pred             CchhhhHhHHHHHHHhcCceEEEEEEEeecccccc-ccCC------------C----------CCCcccCCccCCCceee
Q 024565          154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDG------------P----------SSKDWRGGRAASFNIIP  210 (265)
Q Consensus       154 C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~-~~d~------------~----------~~~~~~~~~~~a~n~~p  210 (265)
                      |+|+.++++|+||+++|+|+++.++++|++||++. +++.            .          +.....++++++||++|
T Consensus         1 Cst~~l~~aL~pL~~~~gi~~v~vsTyQAvSGaG~~gv~eL~~q~~~~l~~~~~~~~~~~~~~p~~~~~~~~~iafN~iP   80 (202)
T d2gz1a2           1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALP   80 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSSSCTTSSCCCCCTTCCBC
T ss_pred             CcHHHHHHHHHHHHHhcCceEEEEEehHhHHhhhHHHHHHHHHHHHHHhcccccccccchhcccccccccceehhhhhhh
Confidence            99999999999999999999999999999999853 1110            0          01123466789999999


Q ss_pred             cCC-----ChhhHH-------HhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHh
Q 024565          211 SST-----GAAKAV-------GKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAI  264 (265)
Q Consensus       211 ~~~-----~~~~~~-------~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~  264 (265)
                      +..     +..+|+       ++++..-...++.+|+|||+++||...++++|+++++.+++++++
T Consensus        81 ~i~~~~~~g~t~EE~k~~~E~~kIl~~~~~~vsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l  146 (202)
T d2gz1a2          81 QIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAI  146 (202)
T ss_dssp             CCSCBCTTSSBHHHHHHHHHHHHHTTCTTSEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHH
T ss_pred             cccchhcccchhhhhHHhhhhcceecccccCcccceEEEEEeecceEEEEEeeehhccHHHHHHHH
Confidence            883     444444       445532234699999999999999999999999999999999886

>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.64  E-value=3.5e-16  Score=123.32  Aligned_cols=99  Identities=17%  Similarity=0.253  Sum_probs=81.6

Q ss_pred             CchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC--CC--hhhHHHhhccCCCCc
Q 024565          154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS--TG--AAKAVGKVLPALNGK  229 (265)
Q Consensus       154 C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~--~~--~~~~~~~~l~e~~~~  229 (265)
                      |+|++++++|+||+++|||+++.++++|++||.+...           +..+.|++|+.  .+  +.+++..++|++  +
T Consensus         1 CsT~~l~~~lkpL~~~fgi~rv~vtt~qa~s~~g~~~-----------~~~~~~~~~~p~~~~~~~~~~v~~~~p~l--~   67 (162)
T d1b7go2           1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQKEVK-----------KGPINSLVPDPATVPSHHAKDVNSVIRNL--D   67 (162)
T ss_dssp             HHHHHHHHHHHHHHTTSCEEEEEEEEEEESSCTTCCS-----------CCCSSCCEESSSSSSCTHHHHHHTTSTTC--E
T ss_pred             CcHHHHHHHHHHHHHHhCEEEEEEEEEeeccCCcccc-----------ccccccccccccccccccceeeeccCCCc--e
Confidence            9999999999999999999999999999999865322           22333444432  22  235677889988  6


Q ss_pred             eeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          230 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       230 v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      ++.+++|||+++||+.+++++|+++++.||++++|+
T Consensus        68 i~~tavRVPv~~~h~~~~~~~~~~~~~~eev~~~l~  103 (162)
T d1b7go2          68 IATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLE  103 (162)
T ss_dssp             EEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             EEEEEEEcCCCcceEEEEEEEECCcCCHHHHHHHHH
Confidence            999999999999999999999999999999999873

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=2.6e-17  Score=127.74  Aligned_cols=111  Identities=14%  Similarity=0.195  Sum_probs=77.3

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcC---CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF-GRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~---p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      |+||||+|+ |++|++++++|.+|   |..++....+.........           +.               +..+..
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~-----------~~---------------~~~~~~   54 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS-----------FG---------------GTTGTL   54 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG-----------GG---------------TCCCBC
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc-----------cc---------------CCceee
Confidence            369999999 99999999877655   5677777765532222110           11               001111


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE--cCC---CCCCceEEeeecccccc
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP---SKDAPMFVVGVNEHEYK  143 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi--s~~---~~~~~~~v~~vn~~~~~  143 (265)
                      ....+.++  |  .++|+||+|+|++.+.++++.+.++|++.+||  |++   .+|+|+++|++|++.|+
T Consensus        55 ~~~~~~~~--~--~~~DivF~a~~~~~s~~~~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~  120 (146)
T d1t4ba1          55 QDAFDLEA--L--KALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT  120 (146)
T ss_dssp             EETTCHHH--H--HTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHH
T ss_pred             ecccchhh--h--hcCcEEEEecCchHHHHhhHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHH
Confidence            11111112  2  57999999999999999999999999875666  555   46799999999988876

>d2g17a2 d.81.1.1 (A:154-308) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.62  E-value=3.4e-16  Score=122.14  Aligned_cols=105  Identities=8%  Similarity=0.012  Sum_probs=82.3

Q ss_pred             CchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC---CChhhHHHhhccCCCCce
Q 024565          154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TGAAKAVGKVLPALNGKL  230 (265)
Q Consensus       154 C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~---~~~~~~~~~~l~e~~~~v  230 (265)
                      ||+|+++++|.||.+++.|+.....+++++||.++++..+.. ...   ....|+.||.   |.|.+|+.+.+   +.++
T Consensus         1 CyaTa~~l~L~PL~~~gli~~~~~i~i~a~SG~SGaG~~~~~-~~~---~~~~~~~~Y~~~~HrH~pEI~q~l---~~~i   73 (155)
T d2g17a2           1 CYPTAAQLSLKPLIDGGLLDLTQWPVINATSGVSGAGRKAAI-SNS---FCEVSLQPYGVFTHRHQPEIAVHL---GAEV   73 (155)
T ss_dssp             HHHHHHHHHHHHHHHTTCBCTTSCCEEEEEECGGGGCSCCCS-TTS---GGGCSEEECSTTTCTHHHHHHHHH---TSCC
T ss_pred             ChHHHHHHHHHHHHHcCCCCCCCceEEEeeeccccccccchh-hhc---cccceeeeccccccccHHHHHHHh---CcCc
Confidence            999999999999999977764443568888888666654321 212   2345777777   67777777765   3468


Q ss_pred             eEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          231 TGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       231 ~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      .|+|+.+|++||+++|++++++++++.++++++|+
T Consensus        74 ~F~Phl~p~~RGIl~Ti~~~l~~~~s~~~i~~~~~  108 (155)
T d2g17a2          74 IFTPHLGNFPRGILETITCRLKAGVTHAQVADVLQ  108 (155)
T ss_dssp             EEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHH
T ss_pred             eeeecccccccccccccccccchhhhhHHHHHHHH
Confidence            99999999999999999999999999999998874

>d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.56  E-value=8.6e-16  Score=121.20  Aligned_cols=109  Identities=6%  Similarity=-0.036  Sum_probs=83.7

Q ss_pred             CchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC---CChhhHHHhhccCC---C
Q 024565          154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TGAAKAVGKVLPAL---N  227 (265)
Q Consensus       154 C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~---~~~~~~~~~~l~e~---~  227 (265)
                      ||+|+++++|+||.+.+.++... ++++++||.+.++..+. ....+. ....|+.||.   |.|.+|+.+.+...   .
T Consensus         1 CyaT~~il~l~PL~~~gli~~~~-i~i~a~SG~SGaGk~~~-~~~~~~-~~~~n~~~Y~~~~HrH~pEi~q~l~~~~~~~   77 (165)
T d2cvoa2           1 CYPTSIQLPLVPLIKAKLIKVSN-IIIDAKSGVSGAGRGAK-EANLYT-EIAEGIHAYGIKGHRHVPEIEQGLSEAAESK   77 (165)
T ss_dssp             HHHHHHHHHHHHHHHTTCBCSSS-CEEEEEEEGGGGCSCCC-GGGBHH-HHTTCCEECSCSCCTHHHHHHHHHHHHHTSC
T ss_pred             CchHHHHHHHHHHHHcCCCCCCC-eEEEEeccccccccccc-hhhhhh-hhhhceeccchhccccCcHHHHHhhhccCCC
Confidence            99999999999999997776434 67888888876665543 122222 3455666665   77888887766432   3


Q ss_pred             CceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          228 GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       228 ~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      .++.|+|+.+|++||++.++++++++.++.+++.++|+
T Consensus        78 ~~~~F~P~l~p~~RGil~ti~~~~~~~~~~~~i~~~~~  115 (165)
T d2cvoa2          78 VTISFTPNLICMKRGMQSTMFVEMAPGVTANDLYQHLK  115 (165)
T ss_dssp             CCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHH
T ss_pred             ccEEEEeeeccccceeEEecccccccccchHHHHHHHH
Confidence            36899999999999999999999999999999999873

>d1vkna2 d.81.1.1 (A:145-307) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=2.9e-15  Score=117.93  Aligned_cols=107  Identities=11%  Similarity=0.055  Sum_probs=81.1

Q ss_pred             CchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC---CChhhHHHhhccCC---C
Q 024565          154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TGAAKAVGKVLPAL---N  227 (265)
Q Consensus       154 C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~---~~~~~~~~~~l~e~---~  227 (265)
                      ||+|+++++|.||.+++.|+... .+++++||.+.++..+. ....+. ...+|+.||.   |.|.+|+.|.+...   .
T Consensus         1 CyaT~~~l~l~PLv~~gli~~~~-i~i~a~SG~SGaGk~~~-~~~~~~-~~~~~~~~Y~~~~HrH~pEi~q~l~~~~~~~   77 (163)
T d1vkna2           1 CYPTSVILALAPALKHNLVDPET-ILVDAKSGVSGAGRKEK-VDYLFS-EVNESLRPYNVAKHRHVPEMEQELGKISGKK   77 (163)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCCSE-EEEEEEEEGGGGCSCCS-GGGBHH-HHTTCCEECSCSCCTHHHHHHHHHHHHHTSC
T ss_pred             CchHHHHHHHHHHHHcCCCCCCc-eEEEeeccccccccccc-cccccc-ccccccccchhhhccccHHHHHHHHhhcCCc
Confidence            99999999999999998786544 57899998877665543 222222 3556666666   67788877766543   2


Q ss_pred             CceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565          228 GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK  265 (265)
Q Consensus       228 ~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~  265 (265)
                      .++.|+|+.+|++||+++|++++++  .+.+++.++|+
T Consensus        78 ~~~~F~Phl~p~~RGil~ti~~~~~--~s~~~i~~~~~  113 (163)
T d1vkna2          78 VNVVFTPHLVPMTRGILSTIYVKTD--KSLEEIHEAYL  113 (163)
T ss_dssp             CEEEEEEEEESSSSCEEEEEEEECS--SCHHHHHHHHH
T ss_pred             ccEEEEEeeccccceeeeeeeeccc--ccchHHHHHHH
Confidence            3689999999999999999999875  47788888873

>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=1.3e-13  Score=107.93  Aligned_cols=97  Identities=24%  Similarity=0.305  Sum_probs=78.5

Q ss_pred             CCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC--CChhhHHHhhccCCCCce
Q 024565          153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS--TGAAKAVGKVLPALNGKL  230 (265)
Q Consensus       153 ~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~--~~~~~~~~~~l~e~~~~v  230 (265)
                      ||+||+++++|+||++.+++.++.+  +..      ..| +    ..+.+..++|++|+.  .+|..+..+.++++  ++
T Consensus         1 SC~T~~l~~~L~pL~~~~~~~rvv~--vr~------a~d-p----~~~~~~i~~nviP~~~~~~~~~~d~~~v~~i--~v   65 (162)
T d2czca1           1 SCNTTGLVRTLSAIREYADYVYAVM--IRR------AAD-P----NDTKRGPINAIKPTVEVPSHHGPDVQTVIPI--NI   65 (162)
T ss_dssp             CHHHHHHHHHHHHHGGGEEEEEEEE--EEE------SSC-T----TCCSCCCSSCCEECCSSSCTHHHHHTTTSCC--CE
T ss_pred             CChHHHHHHHHHHHHHHhCceEEEE--ECc------ccC-c----ccccCCcccccccCCCCCCccchhhcccCCe--EE
Confidence            7999999999999999998877542  221      223 1    134567899999997  46666666677766  59


Q ss_pred             eEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHh
Q 024565          231 TGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAI  264 (265)
Q Consensus       231 ~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~  264 (265)
                      +.+|+|||+++||..+++++|+++++.+|+.++|
T Consensus        66 ~~t~vRVPv~~gH~~~v~ve~~~~~~~~ev~~~l   99 (162)
T d2czca1          66 ETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIF   99 (162)
T ss_dssp             EEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHH
T ss_pred             EEEEEEeeeeeeeEEEEEEEECCCCCHHHHHHHH
Confidence            9999999999999999999999999999999987

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.25  E-value=1.1e-11  Score=97.99  Aligned_cols=87  Identities=24%  Similarity=0.337  Sum_probs=66.6

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |+++||||+|+|++|+.+++.+.++|++|+++|+++......                     ..+         ...  
T Consensus         1 M~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---------------------~~~---------~~~--   48 (170)
T d1f06a1           1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---------------------KTP---------VFD--   48 (170)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---------------------SSC---------EEE--
T ss_pred             CCcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---------------------ccc---------ccc--
Confidence            889999999999999999999999999999999987522110                     000         111  


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      ..+.+.+   ..++|+|+.|||+..+.+++.+++++|+ ++|+
T Consensus        49 ~~~~~~~---~~~~D~Vvi~tp~~~h~~~a~~aL~aG~-~vv~   87 (170)
T d1f06a1          49 VADVDKH---ADDVDVLFLCMGSATDIPEQAPKFAQFA-CTVD   87 (170)
T ss_dssp             GGGGGGT---TTTCSEEEECSCTTTHHHHHHHHHTTTS-EEEC
T ss_pred             chhhhhh---ccccceEEEeCCCcccHHHHHHHHHCCC-cEEE
Confidence            1233333   2579999999999999999999999997 3443

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=98.94  E-value=6.2e-10  Score=88.42  Aligned_cols=93  Identities=20%  Similarity=0.212  Sum_probs=67.3

Q ss_pred             CCccEEEEEccChhHHH-HHHHHHcCCC-eEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEE
Q 024565            1 MGKVKIGINGFGRIGRL-VARVILQRDD-VELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT   77 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~-l~~~L~~~p~-~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~   77 (265)
                      |+++||||+|+|.+|+. +++++.+.++ +++++|+++..+ .+.++      +   .+.        .         ..
T Consensus         1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~------~---~~~--------~---------~~   54 (181)
T d1zh8a1           1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFA------K---MVG--------N---------PA   54 (181)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHH------H---HHS--------S---------CE
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhh------c---ccc--------c---------cc
Confidence            88999999999999987 6888888755 899999998432 11111      0   000        0         11


Q ss_pred             EEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        78 ~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      ++  .+.+++ ++..++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        55 ~~--~~~~el-l~~~~id~v~I~tp~~~h~~~~~~al~~gk-~V~~   96 (181)
T d1zh8a1          55 VF--DSYEEL-LESGLVDAVDLTLPVELNLPFIEKALRKGV-HVIC   96 (181)
T ss_dssp             EE--SCHHHH-HHSSCCSEEEECCCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             ee--eeeecc-ccccccceeeccccccccccccccccccch-hhhc
Confidence            22  344444 344679999999999999999999999995 6666

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=2.7e-09  Score=83.21  Aligned_cols=88  Identities=18%  Similarity=0.280  Sum_probs=64.6

Q ss_pred             ccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ++||||+|+|.+|+. +++.+..+|++++++|+++..+ ...++.         .|         +         ++.+ 
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~---------~~---------~---------~~~~-   52 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICE---------SW---------R---------IPYA-   52 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHH---------HH---------T---------CCBC-
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhh---------cc---------c---------cccc-
Confidence            589999999999986 7899999999999999998543 222210         00         0         1111 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .+.+++   .+++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        53 -~~~~~l---~~~~D~V~I~tp~~~h~~~~~~al~~gk-~V~~   90 (164)
T d1tlta1          53 -DSLSSL---AASCDAVFVHSSTASHFDVVSTLLNAGV-HVCV   90 (164)
T ss_dssp             -SSHHHH---HTTCSEEEECSCTTHHHHHHHHHHHTTC-EEEE
T ss_pred             -ccchhh---hhhcccccccccchhccccccccccccc-eeec
Confidence             223333   2578999999999999999999999995 5666

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.77  E-value=3.8e-09  Score=83.83  Aligned_cols=94  Identities=13%  Similarity=0.253  Sum_probs=67.6

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      ++||||+|+|.+|+.+++.+...+++++++|+++..+ .+.++      ..++ ++       .         ...++  
T Consensus         1 kiki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~------~~~~-~~-------~---------~~~~~--   55 (184)
T d1ydwa1           1 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFA------TANN-YP-------E---------STKIH--   55 (184)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHH------HHTT-CC-------T---------TCEEE--
T ss_pred             CeEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccch------hccc-cc-------c---------ceeec--
Confidence            5899999999999999999999999999999998532 12111      0010 00       0         01233  


Q ss_pred             CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      .|.+++ .+..++|+|+.|||+..+.+++..++++|+ ++++
T Consensus        56 ~~~~~l-l~~~~iD~v~I~tp~~~h~~~~~~~l~~g~-~v~~   95 (184)
T d1ydwa1          56 GSYESL-LEDPEIDALYVPLPTSLHVEWAIKAAEKGK-HILL   95 (184)
T ss_dssp             SSHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHTTTC-EEEE
T ss_pred             CcHHHh-hhccccceeeecccchhhcchhhhhhhccc-eeec
Confidence            344444 234679999999999999999999999996 5656

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=98.70  E-value=1.1e-08  Score=83.76  Aligned_cols=95  Identities=13%  Similarity=0.105  Sum_probs=67.2

Q ss_pred             ccEEEEEccChhHH-HHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGR-LVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~-~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ++||||+|+|.+|+ .+++.+..++++++++|+|+..+ .+.++      ..++ .               +...+..+ 
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~------~~~~-i---------------~~~~~~~~-   89 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVA------AEYG-V---------------DPRKIYDY-   89 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHH------HHTT-C---------------CGGGEECS-
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHH------Hhhc-c---------------cccccccc-
Confidence            58999999999997 47788888999999999997432 22211      0010 0               00112222 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .|.+++ .+..++|+|+.|||+..+.+.+..++++|+ ++++
T Consensus        90 -~d~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~~gk-~v~~  129 (221)
T d1h6da1          90 -SNFDKI-AKDPKIDAVYIILPNSLHAEFAIRAFKAGK-HVMC  129 (221)
T ss_dssp             -SSGGGG-GGCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             -Cchhhh-cccccceeeeeccchhhhhhHHHHhhhcch-hhhc
Confidence             455555 345689999999999999999999999995 5655

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=4e-08  Score=76.36  Aligned_cols=97  Identities=20%  Similarity=0.251  Sum_probs=66.7

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      ++|||+|+|+ |+||+.+++++.+.+++++++..++..... .      ....+.+. +.     +      ...+.+. 
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~-~------g~d~~~~~-~~-----~------~~~~~~~-   62 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL-L------GSDAGELA-GA-----G------KTGVTVQ-   62 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTT-C------SCCTTCSS-SS-----S------CCSCCEE-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchh-c------cchhhhhh-cc-----c------cCCceee-
Confidence            4699999999 999999999999999999999887642210 0      00011111 00     0      0012232 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .+.+++   ...+|+++|-|.+..+.+.++.+.+.|++ +|+
T Consensus        63 -~~~~~~---~~~~DViIDFs~p~~~~~~~~~a~~~~~~-~Vi  100 (162)
T d1diha1          63 -SSLDAV---KDDFDVFIDFTRPEGTLNHLAFCRQHGKG-MVI  100 (162)
T ss_dssp             -SCSTTT---TTSCSEEEECSCHHHHHHHHHHHHHTTCE-EEE
T ss_pred             -ccHHHH---hcccceEEEeccHHHHHHHHHHHHhccce-eEE
Confidence             455554   26789999999999999999999999974 444

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=98.44  E-value=2.6e-07  Score=71.73  Aligned_cols=89  Identities=19%  Similarity=0.266  Sum_probs=62.7

Q ss_pred             ccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            3 KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      +|||||+|+|.+|+. +++++.++++++++ ++++..+ ...++      +   .|         +  .      ...+ 
T Consensus         1 tirvgiiG~G~~~~~~~~~~l~~~~~~~~~-~~d~~~~~~~~~~------~---~~---------~--~------~~~~-   52 (167)
T d1xeaa1           1 SLKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLA------T---RY---------R--V------SATC-   52 (167)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHH------H---HT---------T--C------CCCC-
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHhCCCcEEE-EEECCHHHHHHHH------H---hc---------c--c------cccc-
Confidence            489999999999976 78899999999987 6766322 22221      0   01         0  0      0112 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                       .|.+++ + +.++|+|+.|+|+..+.+.+..++++|+ ++++
T Consensus        53 -~~~~~l-l-~~~iD~V~I~tp~~~H~~~~~~al~~gk-~V~~   91 (167)
T d1xeaa1          53 -TDYRDV-L-QYGVDAVMIHAATDVHSTLAAFFLHLGI-PTFV   91 (167)
T ss_dssp             -SSTTGG-G-GGCCSEEEECSCGGGHHHHHHHHHHTTC-CEEE
T ss_pred             -ccHHHh-c-ccccceeccccccccccccccccccccc-cccc
Confidence             344554 2 3579999999999999999999999996 4655

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=2.6e-08  Score=78.08  Aligned_cols=88  Identities=15%  Similarity=0.202  Sum_probs=60.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ++||||+|+|.+|+.+++.+.+.+..+++.+++.. +.+...                  ...+         ...   .
T Consensus         7 k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~-~~~~~~------------------~~~~---------~~~---~   55 (172)
T d1lc0a1           7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFV-SRRELG------------------SLDE---------VRQ---I   55 (172)
T ss_dssp             SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEE-CSSCCC------------------EETT---------EEB---C
T ss_pred             CcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEecc-chHHHH------------------Hhhc---------cCc---C
Confidence            68999999999999999999987766555555432 111000                  0001         111   1


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +.+++ +...++|+|+.|||+..+.+.+..++++|. ++++
T Consensus        56 ~~~e~-l~~~~iD~V~I~tp~~~H~~~~~~al~~gk-~V~~   94 (172)
T d1lc0a1          56 SLEDA-LRSQEIDVAYICSESSSHEDYIRQFLQAGK-HVLV   94 (172)
T ss_dssp             CHHHH-HHCSSEEEEEECSCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             CHHHH-HhCCCcchhhhcccccccccccccccccch-hhhc
Confidence            23333 344689999999999999999999999995 5666

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.42  E-value=5.9e-07  Score=67.38  Aligned_cols=72  Identities=19%  Similarity=0.314  Sum_probs=57.8

Q ss_pred             EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565            5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN   83 (265)
Q Consensus         5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   83 (265)
                      ||+|+|+ |+||+++++++.+++++++++..|......                                    .     
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~------------------------------------~-----   39 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLS------------------------------------L-----   39 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTH------------------------------------H-----
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchh------------------------------------h-----
Confidence            8999998 999999999999999999998877531110                                    0     


Q ss_pred             CCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                         +  ...++|+|+|.|.+....+.++.+++.|++ +|+
T Consensus        40 ---~--~~~~~DvvIDFS~p~~~~~~~~~~~~~~~~-~Vi   73 (135)
T d1yl7a1          40 ---L--TDGNTEVVIDFTHPDVVMGNLEFLIDNGIH-AVV   73 (135)
T ss_dssp             ---H--HTTTCSEEEECCCTTTHHHHHHHHHHTTCE-EEE
T ss_pred             ---h--ccccCCEEEEcccHHHHHHHHHHHHhcCCC-EEE
Confidence               0  014589999999999999999999999984 444

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=98.35  E-value=1.8e-07  Score=76.95  Aligned_cols=94  Identities=16%  Similarity=0.191  Sum_probs=64.9

Q ss_pred             ccEEEEEccC----hhHHHHHHHHHc-CCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEE
Q 024565            3 KVKIGINGFG----RIGRLVARVILQ-RDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV   76 (265)
Q Consensus         3 ~i~vgI~G~G----~~G~~l~~~L~~-~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~   76 (265)
                      ++||||+|+|    ++++.++..+.+ .|++++++|+++..+. ..++      ..++.        .          ..
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~------~~~~~--------~----------~~   71 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTI------EQLQL--------K----------HA   71 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHH------HHTTC--------T----------TC
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHH------Hhccc--------c----------cc
Confidence            5899999995    477888888876 5889999999985321 1111      00000        0          01


Q ss_pred             EEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC-----CeEEE
Q 024565           77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA-----KKVII  123 (265)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~-----~~vvi  123 (265)
                      ..+  .+.+++ ++..++|+|+.|||+..+.+.+..++++|.     |++++
T Consensus        72 ~~~--~~~~~l-~~~~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~  120 (237)
T d2nvwa1          72 TGF--DSLESF-AQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYV  120 (237)
T ss_dssp             EEE--SCHHHH-HHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEE
T ss_pred             eee--cchhhc-ccccccceeeccCCCcchhhHHHHHHHhcccccCCceEEE
Confidence            122  344444 344689999999999999999999999985     56777

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.02  E-value=5.2e-06  Score=61.49  Aligned_cols=66  Identities=26%  Similarity=0.326  Sum_probs=50.4

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |||+|+|+ |+||+.+.+++.+. ++++++..+..  .                                   ..     
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~-~~~l~~~id~~--~-----------------------------------~~-----   37 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEK-GHELVLKVDVN--G-----------------------------------VE-----   37 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEETT--E-----------------------------------EE-----
T ss_pred             CEEEEECCCCHHHHHHHHHHhcC-CCeEEEEECCC--c-----------------------------------HH-----
Confidence            58999999 99999999887665 47766544321  0                                   00     


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK  119 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~  119 (265)
                         ++    .++|+|+|-|.+....+.++.+++.+++
T Consensus        38 ---~~----~~~DVvIDFS~p~~~~~~l~~~~~~~~p   67 (128)
T d1vm6a3          38 ---EL----DSPDVVIDFSSPEALPKTVDLCKKYRAG   67 (128)
T ss_dssp             ---EC----SCCSEEEECSCGGGHHHHHHHHHHHTCE
T ss_pred             ---Hh----ccCCEEEEecCHHHHHHHHHHHHhcCCC
Confidence               11    4579999999999999999999999974

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.94  E-value=6.3e-06  Score=60.85  Aligned_cols=90  Identities=17%  Similarity=0.078  Sum_probs=65.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      ++||.|+|||.+|+.+++.+..++++++++..|..  ....                      |  -.+.|  ++++...
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd--~~k~----------------------G--~~I~G--i~V~~~~   54 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVD--PEKV----------------------G--RPVRG--GVIEHVD   54 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESC--TTTT----------------------T--CEETT--EEEEEGG
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCc--hHhc----------------------C--CEECC--EEEecHH
Confidence            57999999999999999988888889999999863  2110                      1  11234  3455433


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEE
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI  122 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vv  122 (265)
                      +.+++ . ...+++++.|.|.....+.+..+.+.|+|.+.
T Consensus        55 ~l~~~-~-~~~i~iai~~i~~~~~~~I~d~l~~~gIk~I~   92 (126)
T d2dt5a2          55 LLPQR-V-PGRIEIALLTVPREAAQKAADLLVAAGIKGIL   92 (126)
T ss_dssp             GHHHH-S-TTTCCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHH-H-hhcccEEEEeCCHHHHHHHHHHHHHcCCCEEe
Confidence            33333 1 25689999999999888899999999987443

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=0.00021  Score=54.99  Aligned_cols=111  Identities=15%  Similarity=0.155  Sum_probs=59.7

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCC---eEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEE
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDD---VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT   77 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~---~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~   77 (265)
                      +++++|+|+|+|.+|+.+++.|.++.+   ++++++.+.....-.. ..+..+ ....|. ...  ... ..  ......
T Consensus         2 ~k~i~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~-~g~~~~-~~~~~~-~~~--~~~-~~--~~~~~~   73 (168)
T d1ebfa1           2 TKVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISK-DFSPLN-VGSDWK-AAL--AAS-TT--KTLPLD   73 (168)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECS-SCSCCS-CTTCHH-HHH--HTC-CC--BCCCHH
T ss_pred             CCEEEEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecc-cccchH-hhhhhh-hhh--hhc-cc--ccccHH
Confidence            357999999999999999999987643   6777887653211000 000000 000011 000  000 00  000000


Q ss_pred             EEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC
Q 024565           78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP  126 (265)
Q Consensus        78 ~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~  126 (265)
                      .+. .....    ....|++++|++.....+....+++.|+  .|+++.
T Consensus        74 ~~~-~~~~~----~~~~~vivd~t~~~~~~~~~~~aL~~G~--hVVTAN  115 (168)
T d1ebfa1          74 DLI-AHLKT----SPKPVILVDNTSSAYIAGFYTKFVENGI--SIATPN  115 (168)
T ss_dssp             HHH-HHHTT----CSSCEEEEECSCCHHHHTTHHHHHHTTC--EEECCC
T ss_pred             HHH-HHhcc----CCCceEEEEecCChHHHHHHHHHHHcCC--eEEecC
Confidence            000 00001    1456899999998887888889999998  666544

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=3.9e-05  Score=60.72  Aligned_cols=34  Identities=26%  Similarity=0.281  Sum_probs=30.4

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |.|.||.|.|+ |++|+.+++.|.+.. .++.++..
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g-~~V~~~~R   35 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVR   35 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEc
Confidence            88999999999 999999999998874 78888874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.49  E-value=6.7e-05  Score=57.33  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=26.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |||||+|+|.+|..+++.|.+. +.++.+ +|+.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~-g~~V~~-~d~~   32 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRR-GHYLIG-VSRQ   32 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEE-ECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHC-CCEEEE-EECC
Confidence            5899999999999999999876 467664 4664

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.49  E-value=4.8e-05  Score=57.55  Aligned_cols=33  Identities=12%  Similarity=0.175  Sum_probs=25.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ||||++|+|.+|..+++.|.+....++ .+++++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i-~v~~r~   33 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRI-YIANRG   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEE-EEECSS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcE-EEEeCC
Confidence            589999999999999997776543444 466664

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.32  E-value=0.00062  Score=49.91  Aligned_cols=83  Identities=18%  Similarity=0.198  Sum_probs=61.9

Q ss_pred             ccEEEEEcc----ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF----GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~----G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      ..+|+|+|+    |..|..+++.|.++..-++..|+-..   +         +                   +.|  .+.
T Consensus         8 PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~---~---------~-------------------i~G--~~~   54 (129)
T d2csua1           8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKE---E---------E-------------------VQG--VKA   54 (129)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSC---S---------E-------------------ETT--EEC
T ss_pred             CCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCc---c---------c-------------------cCC--eEe
Confidence            578999997    78899999998876445666665321   0         0                   112  234


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .+.++++   ..+|+|+.++|.....+.++++.+.|+|.+++
T Consensus        55 y--~sl~dlp---~~vDlvvi~vp~~~~~~~~~~~~~~g~~~~vi   94 (129)
T d2csua1          55 Y--KSVKDIP---DEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVI   94 (129)
T ss_dssp             B--SSTTSCS---SCCSEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             e--cchhhcC---CCCceEEEecChHHhHHHHHHHHHcCCCEEEE
Confidence            3  4677774   57999999999999999999999999997776

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00043  Score=52.24  Aligned_cols=85  Identities=13%  Similarity=0.162  Sum_probs=50.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN   83 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   83 (265)
                      |||+|+|+|.+|..+...|.+.. .++..+..........      .....          ....     ....+ ...+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G-~~V~~~~r~~~~~~~~------~~~~~----------~~~~-----~~~~~-~~~~   57 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQG-HEVQGWLRVPQPYCSV------NLVET----------DGSI-----FNESL-TAND   57 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCCSEEEE------EEECT----------TSCE-----EEEEE-EESC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CceEEEEcCHHHhhhh------ccccC----------Cccc-----ccccc-ccch
Confidence            68999999999999999998874 6776665432222110      00000          0000     01111 1123


Q ss_pred             CCCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565           84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLK  115 (265)
Q Consensus        84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~  115 (265)
                      ++.+    .++|+||.|++.....+..+.+..
T Consensus        58 ~~~~----~~~D~iii~vka~~~~~~~~~l~~   85 (167)
T d1ks9a2          58 PDFL----ATSDLLLVTLKAWQVSDAVKSLAS   85 (167)
T ss_dssp             HHHH----HTCSEEEECSCGGGHHHHHHHHHT
T ss_pred             hhhh----cccceEEEeecccchHHHHHhhcc
Confidence            3333    578999999999877776666544

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.22  E-value=0.00014  Score=54.74  Aligned_cols=78  Identities=18%  Similarity=0.173  Sum_probs=48.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN   83 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   83 (265)
                      |||||+|+|.+|..+++.|.++ ++++..............                 ....+           +.  .+
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~-g~~v~~~~~~~~~~~~~~-----------------~~~~~-----------~~--~~   49 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSR-GVEVVTSLEGRSPSTIER-----------------ARTVG-----------VT--ET   49 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT-TCEEEECCTTCCHHHHHH-----------------HHHHT-----------CE--EC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHC-CCeEEEEcCchhHHHHHh-----------------hhccc-----------cc--cc
Confidence            5899999999999999999998 477765543321111100                 00001           00  12


Q ss_pred             CCCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565           84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLK  115 (265)
Q Consensus        84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~  115 (265)
                      ++++   ..++|+||.|+|.....+.+.....
T Consensus        50 ~~e~---~~~~diIi~~v~~~~~~~~~~~~~~   78 (152)
T d1i36a2          50 SEED---VYSCPVVISAVTPGVALGAARRAGR   78 (152)
T ss_dssp             CHHH---HHTSSEEEECSCGGGHHHHHHHHHT
T ss_pred             HHHH---HhhcCeEEEEecCchHHHHHHhhcc
Confidence            3333   2579999999998877666655443

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.22  E-value=0.00034  Score=52.16  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=29.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT   39 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~   39 (265)
                      |||+|+|+|.+|..++..|..++-++-+.+.|...+
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            589999999999999999998876655667776433

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.20  E-value=0.00083  Score=50.24  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=28.1

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |||+|+|+ |.+|..++.+|..++-+.-+.+.|..
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            58999998 99999999999998866555666654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.18  E-value=0.00051  Score=51.51  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=28.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .+||+|+|+|.+|..++..|...+-++-+.+.|..
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            57999999999999999999988756556677753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.13  E-value=0.00032  Score=53.54  Aligned_cols=33  Identities=18%  Similarity=0.164  Sum_probs=25.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcC-CCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~~   37 (265)
                      .||+|+|+|.||..+++.|.+. ...++.+. |++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~-D~~   35 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGY-DIN   35 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEE-CSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEE-ECC
Confidence            5899999999999999999866 44665544 553

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.09  E-value=0.00069  Score=51.57  Aligned_cols=35  Identities=29%  Similarity=0.393  Sum_probs=30.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..||+|+|+|.+|..++..|..++-++-+.+.|..
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            56999999999999999999999877767777764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.07  E-value=0.0004  Score=51.87  Aligned_cols=34  Identities=35%  Similarity=0.447  Sum_probs=28.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |||+|+|+|.+|..++..|...+.++-+.+.|..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            6899999999999999999888766656677753

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.001  Score=53.17  Aligned_cols=36  Identities=22%  Similarity=0.354  Sum_probs=30.3

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCe-EEEEEecc
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDV-ELVAVNDP   36 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~-el~~v~~~   36 (265)
                      |+++||-|.|+ |++|+.+++.|.+++.+ ++.+++.+
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~   49 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRR   49 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecC
Confidence            66789999999 99999999999988765 67777643

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.92  E-value=0.0019  Score=46.31  Aligned_cols=81  Identities=21%  Similarity=0.353  Sum_probs=59.9

Q ss_pred             cEEEEEcc----ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565            4 VKIGINGF----GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   79 (265)
Q Consensus         4 i~vgI~G~----G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   79 (265)
                      .+|+|+|+    |..|..+++.|.++. +++..|+-.   .+         +                   +.|  .+.+
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g-~~V~pVnP~---~~---------~-------------------i~G--~~~y   47 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNPN---YD---------E-------------------IEG--LKCY   47 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTT---CS---------E-------------------ETT--EECB
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCC-CEEEEEccc---cc---------c-------------------ccC--cccc
Confidence            47999996    678999999999986 677766522   10         0                   112  2333


Q ss_pred             ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                        .+.++++   ..+|+|+.|+|.....+..+++.+.|+|.+++
T Consensus        48 --~sl~~lp---~~~D~vvi~vp~~~~~~~l~~~~~~g~k~v~~   86 (116)
T d1y81a1          48 --RSVRELP---KDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWF   86 (116)
T ss_dssp             --SSGGGSC---TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             --ccchhcc---ccceEEEEEeCHHHHHHHHHHHHhcCCceEEe
Confidence              3455563   56899999999999999999999999987766

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.86  E-value=0.00045  Score=51.55  Aligned_cols=33  Identities=27%  Similarity=0.333  Sum_probs=26.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .||+|+|+|++|..++.+|..++-.|++ +.|..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~-l~D~~   34 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIV-LLDIV   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEE-EECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEE-EEeec
Confidence            5999999999999999999887656744 45553

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.79  E-value=0.00044  Score=54.14  Aligned_cols=92  Identities=14%  Similarity=0.056  Sum_probs=49.9

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   80 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   80 (265)
                      |.|.||+|+|+|.+|..++..|.+.. -++ .+.++.  .+.+..+. ....++.|. .      +  +.+. +.+.+. 
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g-~~V-~l~~r~--~~~~~~i~-~~~~n~~yl-~------~--~~l~-~~i~~t-   68 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKC-REV-CVWHMN--EEEVRLVN-EKRENVLFL-K------G--VQLA-SNITFT-   68 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTE-EEE-EEECSC--HHHHHHHH-HHTBCTTTS-T------T--CBCC-TTEEEE-
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcC-CeE-EEEEec--HHHHHHHh-hcccccccc-c------c--cccc-cccccc-
Confidence            45678999999999999999998763 243 334442  11111111 011112221 0      1  0011 123332 


Q ss_pred             cCCCCCCCcccccccEEEEecCCcccHHhHHH
Q 024565           81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAA  112 (265)
Q Consensus        81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~  112 (265)
                       .|.++.   ..++|+||.|+|....++..++
T Consensus        69 -~~l~~a---~~~ad~iiiavPs~~~~~~~~~   96 (189)
T d1n1ea2          69 -SDVEKA---YNGAEIILFVIPTQFLRGFFEK   96 (189)
T ss_dssp             -SCHHHH---HTTCSCEEECSCHHHHHHHHHH
T ss_pred             -hhhhhc---cCCCCEEEEcCcHHHHHHHHHH
Confidence             343332   2578999999998877666544

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.63  E-value=0.0014  Score=49.72  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |++.||+|+|+|.+|..++..|...+.++-+.+.|..
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            4567999999999999999999999877666777754

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.63  E-value=0.00026  Score=53.08  Aligned_cols=77  Identities=14%  Similarity=0.019  Sum_probs=41.9

Q ss_pred             EEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCC
Q 024565            6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP   84 (265)
Q Consensus         6 vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~   84 (265)
                      ||+||+|.||+.+++.|.+.  .++..|++++.+ .+.++.                  ..+       .  ..   .++
T Consensus         2 IgfIG~G~mg~~l~~~L~~~--~~~~~v~~R~~~~~~~l~~------------------~~~-------~--~~---~~~   49 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDR--YEIGYILSRSIDRARNLAE------------------VYG-------G--KA---ATL   49 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC------CCCEECSSHHHHHHHHH------------------HTC-------C--CC---CSS
T ss_pred             EEEEeCcHHHHHHHHHHHhC--CCEEEEEeCChhhhcchhh------------------ccc-------c--cc---cch
Confidence            79999999999999988653  555567776422 222210                  111       0  01   233


Q ss_pred             CCCCcccccccEEEEecCCcccHHhHHHHHhCC
Q 024565           85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGG  117 (265)
Q Consensus        85 ~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G  117 (265)
                      ++.   ....|+||.|+|.....+....+...|
T Consensus        50 ~~~---~~~~DiVil~v~d~~i~~v~~~l~~~~   79 (153)
T d2i76a2          50 EKH---PELNGVVFVIVPDRYIKTVANHLNLGD   79 (153)
T ss_dssp             CCC---CC---CEEECSCTTTHHHHHTTTCCSS
T ss_pred             hhh---hccCcEEEEeccchhhhHHHhhhcccc
Confidence            333   256899999999876666555443334

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.62  E-value=0.00042  Score=52.61  Aligned_cols=32  Identities=31%  Similarity=0.599  Sum_probs=26.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |||||+|+|.||..+++.|.++. +++. +++++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G-~~V~-~~d~~   32 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAG-YSLV-VSDRN   32 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT-CEEE-EECSC
T ss_pred             CEEEEEehhHHHHHHHHHHHHCC-CeEE-EEeCC
Confidence            58999999999999999999874 6654 56654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.57  E-value=0.0028  Score=47.35  Aligned_cols=35  Identities=11%  Similarity=0.198  Sum_probs=28.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..||+|+|+|.+|..++..|...+-++-+.+.|..
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            46899999999999999999988766555677753

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.47  E-value=0.0014  Score=50.49  Aligned_cols=93  Identities=14%  Similarity=0.095  Sum_probs=51.4

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN   83 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   83 (265)
                      |||+|+|+|.+|..++..|.+.. .++. +..+..+...+..+. ....++.+. .          ......+  ....|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g-~~V~-l~~r~~~~~~~~~i~-~~~~~~~~~-~----------~~~~~~i--~~~~~   64 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNG-NEVR-IWGTEFDTEILKSIS-AGREHPRLG-V----------KLNGVEI--FWPEQ   64 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC-CEEE-EECCGGGHHHHHHHH-TTCCBTTTT-B----------CCCSEEE--ECGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEEecccHHHHHHHh-hhhhhhhhc-c----------hhccccc--ccccc
Confidence            68999999999999999998653 3433 333321221111111 111122222 0          0111122  21133


Q ss_pred             CCCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565           84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLK  115 (265)
Q Consensus        84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~  115 (265)
                      .++.   ..++|+|+.|+|....++...++..
T Consensus        65 ~~~~---~~~ad~Ii~avps~~~~~~~~~l~~   93 (180)
T d1txga2          65 LEKC---LENAEVVLLGVSTDGVLPVMSRILP   93 (180)
T ss_dssp             HHHH---HTTCSEEEECSCGGGHHHHHHHHTT
T ss_pred             HHHH---HhccchhhcccchhhhHHHHHhhcc
Confidence            3322   2578999999999888887776554

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.47  E-value=0.0033  Score=46.42  Aligned_cols=34  Identities=32%  Similarity=0.439  Sum_probs=27.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |||+|+|+|.+|..++..|..++-++-+.+.|..
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            6999999999999999988877666555677753

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.47  E-value=0.0046  Score=45.66  Aligned_cols=82  Identities=21%  Similarity=0.212  Sum_probs=60.7

Q ss_pred             ccEEEEEcc----ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF----GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~----G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      ..+|+|+|+    +..|..+++.|.++. +++..|+-.. .           +                   +.|  .++
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g-~~v~pVnP~~-~-----------~-------------------i~G--~~~   64 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPKY-E-----------E-------------------VLG--RKC   64 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTC-S-----------E-------------------ETT--EEC
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCC-CEEEEECCcc-c-----------c-------------------cCC--Ccc
Confidence            357999997    578999999999885 6776665321 0           0                   112  233


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .+.++++   ..+|+|+.++|.....+.++++.+.|+|.+++
T Consensus        65 ~--~sl~dlp---~~iD~v~i~vp~~~~~~~~~e~~~~g~k~v~~  104 (139)
T d2d59a1          65 Y--PSVLDIP---DKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWF  104 (139)
T ss_dssp             B--SSGGGCS---SCCSEEEECSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             c--ccccccC---ccceEEEEEeCHHHHHHHHHHHHHhCCCEEEE
Confidence            3  3556663   56999999999999999999999999987776

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.44  E-value=0.0036  Score=46.50  Aligned_cols=34  Identities=24%  Similarity=0.310  Sum_probs=27.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .||+|+|+|.+|..++..|...+-+.-+.+.|..
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            5899999999999999999888766555566653

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.39  E-value=0.0065  Score=44.91  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=28.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .||+|+|+|.+|..++..|..++-++-+.+.|..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~   35 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   35 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            5899999999999999999988766656677754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.32  E-value=0.00069  Score=50.94  Aligned_cols=31  Identities=29%  Similarity=0.514  Sum_probs=25.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||||+|+|.+|..+++.|.+.+ .++ .++++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~-~~i-~v~~r   31 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTP-HEL-IISGS   31 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS-CEE-EEECS
T ss_pred             CEEEEEeccHHHHHHHHHHHhCC-CeE-EEEcC
Confidence            58999999999999999998875 454 35554

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.29  E-value=0.0056  Score=45.54  Aligned_cols=34  Identities=29%  Similarity=0.399  Sum_probs=27.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .||+|+|+|++|..++..|..++-+.-+.+.|..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            6999999999999999988877655444567754

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0041  Score=46.28  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=25.9

Q ss_pred             cEEEEEcc-ChhHHHHHHHHH-cCCCeEEEEEeccc
Q 024565            4 VKIGINGF-GRIGRLVARVIL-QRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~-~~p~~el~~v~~~~   37 (265)
                      |||+|+|+ |.+|..++.+|. +.+..+-+.+.|..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            68999997 999999988775 45655556666653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.13  E-value=0.002  Score=49.16  Aligned_cols=31  Identities=16%  Similarity=0.215  Sum_probs=25.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .||+|+|+|.+|..++..|.++. .++. +.++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G-~~V~-~~~r   32 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKG-QSVL-AWDI   32 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCC-CEEE-EEEC
Confidence            68999999999999999999885 5655 4444

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.93  E-value=0.0037  Score=46.43  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=28.3

Q ss_pred             EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ||+|+|+ |.+|..++.+|...+-++-+.+.|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            8999998 99999999999988877666677754

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.81  E-value=0.011  Score=43.55  Aligned_cols=32  Identities=28%  Similarity=0.346  Sum_probs=27.6

Q ss_pred             EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ||+|+|+ |.+|..++.+|...+-++-..+.|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            8999996 9999999999999887766667774

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.72  E-value=0.006  Score=45.59  Aligned_cols=35  Identities=34%  Similarity=0.426  Sum_probs=28.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI   38 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~   38 (265)
                      +.||+|+|+|.+|..++.+|..++-.| +.+.|...
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~e-l~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGD-VVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCe-EEEEeccC
Confidence            579999999999999998888876445 55777643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.67  E-value=0.016  Score=42.78  Aligned_cols=28  Identities=32%  Similarity=0.496  Sum_probs=23.5

Q ss_pred             ccEEEEEc-cChhHHHHHHHHHcCCCeEEE
Q 024565            3 KVKIGING-FGRIGRLVARVILQRDDVELV   31 (265)
Q Consensus         3 ~i~vgI~G-~G~~G~~l~~~L~~~p~~el~   31 (265)
                      |.||+||| +|.||+.+++.|.+.. +++.
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G-~~V~   37 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASG-YPIS   37 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTT-CCEE
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcC-CCcE
Confidence            57999999 6999999999998774 5543

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.64  E-value=0.01  Score=46.16  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=25.8

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCe-EEEEE
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDV-ELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~-el~~v   33 (265)
                      +.||-|.|+ |++|+.+++.|.++++. ++..+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~   34 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAP   34 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEE
Confidence            469999999 99999999999998874 44433

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=95.44  E-value=0.0079  Score=44.89  Aligned_cols=108  Identities=16%  Similarity=0.178  Sum_probs=62.2

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCC-eEEEEEeccccChhhhhhheeecccCCcccccceeeeCC---ceE--EECCE
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD---KTL--LFGEK   74 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~-~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l--~~~g~   74 (265)
                      ++.||+|+|+ |-+|+..++.+.++|+ |++++++..+ ..+.+..+..  ...|.+-    ...+.   +.+  ...+.
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~-N~~~L~~q~~--ef~Pk~v----~i~d~~~~~~l~~~~~~~   73 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR-NVKDLADAAK--RTNAKRA----VIADPSLYNDLKEALAGS   73 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS-CHHHHHHHHH--HTTCSEE----EESCGGGHHHHHHHTTTC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC-CHHHHHHHHH--hhccccc----eeccHHHHHHHHHHhhhc
Confidence            4689999999 9999999999999975 9999998764 4333322111  1011110    00000   000  00111


Q ss_pred             EEEEEecCC-CCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           75 PVTVFGVRN-PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        75 ~~~~~~~~~-~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      .+.++...+ ..++  ...++|+|+.|.......+..-.+++.|.
T Consensus        74 ~~~v~~g~~~l~~~--~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk  116 (150)
T d1r0ka2          74 SVEAAAGADALVEA--AMMGADWTMAAIIGCAGLKATLAAIRKGK  116 (150)
T ss_dssp             SSEEEESHHHHHHH--HTSCCSEEEECCCSGGGHHHHHHHHHTTS
T ss_pred             ccccccCccchhee--cccccceeeeecCchhHHHHHHHHHhcCC
Confidence            122222111 1111  12468999999888888888888889985

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.01  Score=44.24  Aligned_cols=108  Identities=15%  Similarity=0.116  Sum_probs=61.7

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCC-CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCc-------eEEECC
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDK-------TLLFGE   73 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p-~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~g   73 (265)
                      |.||+|+|+ |-+|+..++.+.++| .|++++++..+ ..+.+.....  .-.|++-    -..+.+       .+.-.+
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~-N~~~L~~q~~--~f~pk~v----~i~d~~~~~~l~~~l~~~~   73 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK-NVTRMVEQCL--EFSPRYA----VMDDEASAKLLKTMLQQQG   73 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS-CHHHHHHHHH--HHCCSEE----EESSHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC-cHHHHHHHHH--HHhhccc----ccccHHHHHHHHHHhhhhc
Confidence            478999999 999999999999997 59999998754 3333322111  0011110    000000       000001


Q ss_pred             EEEEEEe-cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           74 KPVTVFG-VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        74 ~~~~~~~-~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      ..+.++. ..+..++ -...++|+|+.+.......+..-.+++.|.
T Consensus        74 ~~~~~~~g~~~l~~~-~~~~~~D~vi~AI~G~aGL~~t~~aik~gk  118 (151)
T d1q0qa2          74 SRTEVLSGQQAACDM-AALEDVDQVMAAIVGAAGLLPTLAAIRAGK  118 (151)
T ss_dssp             CCCEEEESHHHHHHH-HTCTTCCEEEECCSSGGGHHHHHHHHHTTC
T ss_pred             cccccccChHHHHHH-hcCCCCCEEEEecCcccHHHHHHHHHhcCC
Confidence            1122221 1111111 011468999999998888888888899996

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.016  Score=39.22  Aligned_cols=85  Identities=20%  Similarity=0.185  Sum_probs=51.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      -.||.|+|+|..|+.+++.|.++. .++. +.|......... .+         .      ...        .. .+.  
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g-~~v~-~~D~~~~~~~~~-~~---------~------~~~--------~~-~~~--   55 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARG-VTPR-VMDTRMTPPGLD-KL---------P------EAV--------ER-HTG--   55 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTT-CCCE-EEESSSSCTTGG-GS---------C------TTS--------CE-EES--
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCC-CEEE-EeeCCcCchhHH-HH---------h------hcc--------ce-eec--
Confidence            358999999999999999999884 5543 334322211100 00         0      001        01 111  


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      ...+..|  .++|.|+.+.+-....+....+.+.|+
T Consensus        56 ~~~~~~~--~~~d~vi~SPGi~~~~~~~~~a~~~gi   89 (93)
T d2jfga1          56 SLNDEWL--MAADLIVASPGIALAHPSLSAAADAGI   89 (93)
T ss_dssp             BCCHHHH--HHCSEEEECTTSCTTSHHHHHHHHTTC
T ss_pred             ccchhhh--ccCCEEEECCCCCCCCHHHHHHHHcCC
Confidence            1111112  578999998777667778888999998

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=95.22  E-value=0.0077  Score=45.36  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=28.2

Q ss_pred             CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +..||.|+|+|.+|+.+++.|..+. ++-+.|+.++
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g-~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRG-VRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHC-CSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcC-CcEEEEEcCc
Confidence            3578999999999999999999874 6555666664

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.17  E-value=0.018  Score=42.93  Aligned_cols=87  Identities=7%  Similarity=0.027  Sum_probs=52.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   81 (265)
                      ..||.|+|+|.+|+.+++.|.++. .+++ |.++..+ ...++.         .+.        .       ... ..  
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g-~~V~-v~dr~~~~a~~l~~---------~~~--------~-------~~~-~~--   52 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSG-IKVT-VACRTLESAKKLSA---------GVQ--------H-------STP-IS--   52 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTT-CEEE-EEESCHHHHHHHHT---------TCT--------T-------EEE-EE--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CEEE-EEECChHHHHHHHh---------ccc--------c-------ccc-cc--
Confidence            478999999999999999999885 5765 5555322 332221         011        0       001 11  


Q ss_pred             CCCCCCCcc---cccccEEEEecCCcccHHhHHHHHhCCC
Q 024565           82 RNPEEIPWA---ETGAEYVVESTGVFTDKDKAAAHLKGGA  118 (265)
Q Consensus        82 ~~~~~~~~~---~~~~DvV~~at~~~~~~~~~~~~~~~G~  118 (265)
                      .+.....+.   ....|.++.++|..........+.+.++
T Consensus        53 ~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~   92 (182)
T d1e5qa1          53 LDVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKK   92 (182)
T ss_dssp             CCTTCHHHHHHHHTTSSEEEECSCGGGHHHHHHHHHHHTC
T ss_pred             ccccchhhhHhhhhccceeEeeccchhhhHHHHHHHhhcc
Confidence            111100000   1356899999999888877778888887

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.012  Score=45.52  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=28.3

Q ss_pred             CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |+..||||+|+|.||+.++.+++++. ++++ +.|+.
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G-~~V~-l~D~~   36 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATG-HTVV-LVDQT   36 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTT-CEEE-EECSC
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCC-CcEE-EEECC
Confidence            55679999999999999999999874 7754 55553

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=95.01  E-value=0.026  Score=41.18  Aligned_cols=84  Identities=12%  Similarity=0.054  Sum_probs=58.6

Q ss_pred             ccEEEEEcc----ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565            3 KVKIGINGF----GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV   78 (265)
Q Consensus         3 ~i~vgI~G~----G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   78 (265)
                      ..+|||+|+    +..|..+++.|.++. +.+.-++-. ....         +                   +.|  .+.
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g-~~~~~v~~~-~~~~---------~-------------------i~g--~~~   60 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLPVNPR-FQGE---------E-------------------LFG--EEA   60 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEEECGG-GTTS---------E-------------------ETT--EEC
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCC-CCceEEEec-cccc---------e-------------------eec--eec
Confidence            357999998    678999999998875 555444321 1110         0                   112  223


Q ss_pred             EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +  .+..+++   ..+|+|+.|+|.....+.++++.+.|+|.+++
T Consensus        61 ~--~~l~~i~---~~iD~v~v~~p~~~v~~~v~~~~~~g~k~i~~  100 (136)
T d1iuka_          61 V--ASLLDLK---EPVDILDVFRPPSALMDHLPEVLALRPGLVWL  100 (136)
T ss_dssp             B--SSGGGCC---SCCSEEEECSCHHHHTTTHHHHHHHCCSCEEE
T ss_pred             c--cchhhcc---CCCceEEEeccHHHHHHHHHHHHhhCCCeEEE
Confidence            3  3455553   56899999999999999999999999987777

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.79  E-value=0.012  Score=44.09  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=26.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |.|||++|.|.||..+++.|.++. +++ .+.++.
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g-~~v-~~~d~~   33 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAG-YLL-NVFDLV   33 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTT-CEE-EEECSS
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCC-CeE-EEEECc
Confidence            478999999999999999999884 665 455553

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.31  E-value=0.023  Score=40.92  Aligned_cols=30  Identities=27%  Similarity=0.560  Sum_probs=25.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |||-|+|+|++|+.+++.|.++. .+++.|-
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g-~~v~vid   30 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKG-HDIVLID   30 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CCcceec
Confidence            68999999999999999998774 6766663

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.28  E-value=0.16  Score=35.10  Aligned_cols=85  Identities=15%  Similarity=0.125  Sum_probs=52.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe-c
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG-V   81 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-~   81 (265)
                      -.||.|+|+|.+|.+-++.|.+.. .+++.+.... +..... +.                ..+ .+       .... .
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~g-a~v~v~~~~~-~~~~~~-~~----------------~~~-~i-------~~~~~~   64 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAG-ARLTVNALTF-IPQFTV-WA----------------NEG-ML-------TLVEGP   64 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-BEEEEEESSC-CHHHHH-HH----------------TTT-SC-------EEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeccC-ChHHHH-HH----------------hcC-Cc-------eeeccC
Confidence            468999999999999999999884 7766655332 221111 00                001 01       1111 1


Q ss_pred             CCCCCCCcccccccEEEEecCCcc-cHHhHHHHHhCCC
Q 024565           82 RNPEEIPWAETGAEYVVESTGVFT-DKDKAAAHLKGGA  118 (265)
Q Consensus        82 ~~~~~~~~~~~~~DvV~~at~~~~-~~~~~~~~~~~G~  118 (265)
                      .+.+++    .++++|+.|++... ..+....+.+.|+
T Consensus        65 ~~~~dl----~~~~lv~~at~d~~~n~~i~~~a~~~~i   98 (113)
T d1pjqa1          65 FDETLL----DSCWLAIAATDDDTVNQRVSDAAESRRI   98 (113)
T ss_dssp             CCGGGG----TTCSEEEECCSCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHh----CCCcEEeecCCCHHHHHHHHHHHHHcCC
Confidence            122334    57899999988754 4556667778886

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.15  E-value=0.021  Score=44.38  Aligned_cols=31  Identities=29%  Similarity=0.520  Sum_probs=25.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      |||+|+|+||+|..++-.|++.. .+|.+ .|.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g-~~V~g-~D~   31 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARG-HEVIG-VDV   31 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT-CEEEE-ECS
T ss_pred             CEEEEECCCHhHHHHHHHHHhCC-CcEEE-EeC
Confidence            58999999999999999998774 67654 443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.09  E-value=0.088  Score=39.64  Aligned_cols=31  Identities=13%  Similarity=0.118  Sum_probs=23.3

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +|.|+|+|.+|...+.++.... .+.+.+.+.
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~   60 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGS   60 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTT-CSCEEEECC
T ss_pred             EEEEEcCCcchhhhhhhhhccc-ccccccccc
Confidence            6999999999999999888653 443445554

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.95  E-value=0.018  Score=43.62  Aligned_cols=32  Identities=25%  Similarity=0.453  Sum_probs=26.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      |||||||.|.||..+++.|.++. ++| .++++.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G-~~V-~~~dr~   33 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKG-FKV-AVFNRT   33 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT-CCE-EEECSS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCC-CeE-EEEECC
Confidence            68999999999999999999884 665 466663

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.65  E-value=0.03  Score=41.67  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=27.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +.||+|+|+|.+|..++.+|..++-.|++ +.|..
T Consensus         7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~-L~D~~   40 (154)
T d1pzga1           7 RKKVAMIGSGMIGGTMGYLCALRELADVV-LYDVV   40 (154)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEE-EECSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCceEE-EEEec
Confidence            57999999999999999888877645754 66654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.53  E-value=0.032  Score=42.84  Aligned_cols=28  Identities=25%  Similarity=0.399  Sum_probs=22.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |||+|+|+||+|..++-.++ . +.+++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~-g~~V~g~   28 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-L-QNEVTIV   28 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-T-TSEEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-C-CCcEEEE
Confidence            58999999999999886554 4 5787755

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.084  Score=39.39  Aligned_cols=32  Identities=28%  Similarity=0.267  Sum_probs=23.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      -+|.|+|+|.+|...+.++.... .+-+.+.+.
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~   59 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDL   59 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CSEEEEEES
T ss_pred             CEEEEECCCccHHHHHHHHHHcC-CceEEeccC
Confidence            37999999999999999887764 543344444

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.23  E-value=0.033  Score=42.62  Aligned_cols=32  Identities=19%  Similarity=0.163  Sum_probs=26.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcC-CCeEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQR-DDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~   35 (265)
                      |||.|+|+|++|.++++.|.+. ++.+++.+..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~   33 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEK   33 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEES
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            5899999999999999999864 7788776653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.95  E-value=0.041  Score=41.69  Aligned_cols=32  Identities=22%  Similarity=0.180  Sum_probs=23.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      -+|.|+|+|.+|...+.++... +.+-+.+.+.
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~   61 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSL-GAENVIVIAG   61 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TBSEEEEEES
T ss_pred             CEEEEECCCccchhheeccccc-cccccccccc
Confidence            4799999999999999988766 4643333343

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.83  E-value=0.22  Score=36.72  Aligned_cols=31  Identities=16%  Similarity=0.140  Sum_probs=25.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      -+|.|+|+|.+|...+.++.... .+++++..
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~   58 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYG-AFVVCTAR   58 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CEEEEEcccccchhhHhhHhhhc-ccccccch
Confidence            37899999999999998887765 78776643

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=92.80  E-value=0.052  Score=41.94  Aligned_cols=29  Identities=28%  Similarity=0.407  Sum_probs=24.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.+|+++++.|... ++++.+.
T Consensus        50 ktvgIiG~G~IG~~va~~l~~f-g~~v~~~   78 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAF-GFNVLFY   78 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCEEEEE
T ss_pred             ceEEEeccccccccceeeeecc-ccceeec
Confidence            5899999999999999999876 4877654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=92.80  E-value=0.053  Score=42.05  Aligned_cols=31  Identities=19%  Similarity=0.434  Sum_probs=25.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .+|||+|+|.+|+++++.|... ++++.+. ++
T Consensus        44 k~vgIiG~G~IG~~va~~l~~f-g~~V~~~-d~   74 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGF-GAKVITY-DI   74 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEE-CS
T ss_pred             CeEEEecccccchhHHHhHhhh-ccccccc-Cc
Confidence            6899999999999999999876 4777554 44

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.63  E-value=0.057  Score=41.87  Aligned_cols=29  Identities=21%  Similarity=0.470  Sum_probs=24.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.||+++++.|... ++++.+.
T Consensus        46 ktvgIiG~G~IG~~va~~l~~f-g~~v~~~   74 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGF-GAKVIAY   74 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             eeeeeeeccccccccccccccc-ceeeecc
Confidence            6899999999999999999877 4776543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.49  E-value=0.13  Score=38.79  Aligned_cols=33  Identities=12%  Similarity=0.019  Sum_probs=26.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      -+|.|+|+|.+|...+.++.... .+.+.+.+.+
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~   62 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDIN   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSC
T ss_pred             CEEEEECCChHHHHHHHHHHHhC-Cceeeeeccc
Confidence            37999999999999999888774 6656666654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.49  E-value=0.06  Score=40.15  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=24.5

Q ss_pred             cEEEEEc-cChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGING-FGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G-~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |||+|+| +|.+|+.+++.|.++. .+|+...
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G-~~V~l~~   31 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLG-HEIVVGS   31 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTT-CEEEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence            5899995 5999999999999884 6766553

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.48  E-value=0.04  Score=41.23  Aligned_cols=32  Identities=22%  Similarity=0.450  Sum_probs=25.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      -+|.|+|+|.+|...+.++... +.+++.+.+.
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~   63 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTS   63 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CEEEEeccchHHHHHHHHhhcc-cccchhhccc
Confidence            3799999999999999888766 5787765544

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.35  E-value=0.041  Score=41.47  Aligned_cols=33  Identities=12%  Similarity=0.044  Sum_probs=25.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      -+|.|+|+|.+|...+.++.... .+.+.+.+.+
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~   62 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIV   62 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESC
T ss_pred             CEEEEeCCCHHHhhhhhcccccc-cceeeeeccH
Confidence            37999999999999999887764 5566666653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.15  E-value=0.057  Score=39.76  Aligned_cols=31  Identities=23%  Similarity=0.268  Sum_probs=26.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcC-CCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQR-DDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~   34 (265)
                      .||.|||+|++|.+++..|.++ ++++++-+.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie   34 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIE   34 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEE
Confidence            5999999999999999999865 678887663

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.87  E-value=0.079  Score=40.39  Aligned_cols=30  Identities=20%  Similarity=0.433  Sum_probs=24.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      -.+|||+|+|.+|+++++.+.... +++.+.
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g-~~v~~~   71 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALG-AQVRGF   71 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTT-CEEEEE
T ss_pred             CceEEEeccccccccceeeeeccc-cccccc
Confidence            368999999999999999998774 776544

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=91.76  E-value=0.063  Score=40.48  Aligned_cols=33  Identities=9%  Similarity=0.155  Sum_probs=27.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +-+|||||+|.||..+++.|.++. +++. +.++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G-~~V~-v~dr~   34 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHG-FVVC-AFNRT   34 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTT-CCEE-EECSS
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCC-CeEE-EEcCC
Confidence            468999999999999999999884 6654 55654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.35  E-value=0.12  Score=36.53  Aligned_cols=31  Identities=23%  Similarity=0.247  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      +.|+.|+|+|++|.|++..|.+. +.+++-+.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~l-G~~Vtii~   53 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRL-GSKVTVVE   53 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-TCEEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHhh-CcceeEEE
Confidence            46899999999999999999977 46765554

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.31  E-value=0.13  Score=36.03  Aligned_cols=31  Identities=29%  Similarity=0.323  Sum_probs=25.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ..||.|+|+|++|.|++..|.+. +.++.-+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~-g~~Vtlv~   52 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRL-GIDSYIFA   52 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTT-TCEEEEEC
T ss_pred             CCEEEEECCchHHHHHHHHHHhc-cccceeee
Confidence            36899999999999999999866 46766554

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=91.28  E-value=0.056  Score=41.35  Aligned_cols=32  Identities=16%  Similarity=0.205  Sum_probs=25.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .||||+|+|.||+.++..++++ +++++ +.|+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~-G~~V~-l~D~~   36 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASK-GTPIL-MKDIN   36 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHT-TCCEE-EECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCeEE-EEECC
Confidence            4799999999999999888888 46654 55553

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.28  E-value=0.12  Score=35.96  Aligned_cols=31  Identities=13%  Similarity=0.131  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ..|+.|+|+|++|.|++..|.+.. .+++-+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G-~~Vtlve   52 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFG-TKVTILE   52 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCeEEEECCCccceeeeeeecccc-cEEEEEE
Confidence            368999999999999999998874 7765554

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.15  E-value=0.21  Score=40.10  Aligned_cols=103  Identities=17%  Similarity=0.222  Sum_probs=59.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh---h--hhhhheeec-----ccCCcccccceeeeCCceEEEC
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT---D--YMTYMFKYD-----SVHGQWKHHELKVKDDKTLLFG   72 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~---~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~   72 (265)
                      -.||+|=|+|.+|..+++.|.+. +..+++|.|.....   +  ....++++.     .......  ......+      
T Consensus        36 g~~v~IQGfGnVG~~~a~~L~e~-GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~--~~~~~~~------  106 (255)
T d1bgva1          36 GKTVALAGFGNVAWGAAKKLAEL-GAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQ--DYADKFG------  106 (255)
T ss_dssp             TCEEEECCSSHHHHHHHHHHHHH-TCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTH--HHHHHHT------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchh--hhhhhcC------
Confidence            36999999999999999999987 49999998753110   0  000011000     0000000  0000000      


Q ss_pred             CEEEEEEecCCCCCCCcccccccEEEEecCC-cccHHhHHHHHhCCCCeEEE
Q 024565           73 EKPVTVFGVRNPEEIPWAETGAEYVVESTGV-FTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        73 g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~-~~~~~~~~~~~~~G~~~vvi  123 (265)
                         ...+   +++++ |. .++|+.|=|.-. ..+.+.+..+...||| +|+
T Consensus       107 ---~~~~---~~~~~-~~-~~~DiliPcA~~~~I~~~~a~~l~a~~ck-~I~  149 (255)
T d1bgva1         107 ---VQFF---PGEKP-WG-QKVDIIMPCATQNDVDLEQAKKIVANNVK-YYI  149 (255)
T ss_dssp             ---CEEE---ETCCG-GG-SCCSEEECCSCTTCBCHHHHHHHHHTTCC-EEE
T ss_pred             ---ceee---chhhc-cc-ccccEEeeccccccccHHHHHhhhhcCce-EEe
Confidence               1121   24444 64 589998887654 5578888888888996 445

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.13  E-value=0.097  Score=41.57  Aligned_cols=31  Identities=29%  Similarity=0.568  Sum_probs=26.9

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |||-|.|+ |++|+.+++.|.++ +.+++++..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~-g~~Vi~~~r   33 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGK-NVEVIPTDV   33 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTS-SEEEEEECT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCEEEEeec
Confidence            68999999 99999999999877 488877754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.09  E-value=0.13  Score=36.09  Aligned_cols=32  Identities=25%  Similarity=0.349  Sum_probs=27.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      ..|+.|+|+|++|.|++..|.+. +.+++-+..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~-G~~Vtiv~~   53 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARL-GAEVTVLEA   53 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-TCEEEEEES
T ss_pred             CCeEEEECCChHHHHHHHHHHHc-CCceEEEEe
Confidence            46899999999999999999987 477776664

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.82  E-value=0.087  Score=42.31  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=28.9

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +|.||-|.|+ |++|+.+++.|.++. .++.++...
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~R~   36 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRP   36 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECC
Confidence            4678999999 999999999999885 788877653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.79  E-value=0.079  Score=37.73  Aligned_cols=29  Identities=24%  Similarity=0.481  Sum_probs=23.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .|+.|+|+|.+|+.+++.|.++. .+++.|
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g-~~vvvi   29 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMG-HEVLAV   29 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT-CCCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CeEEEe
Confidence            36899999999999999998774 565555

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.71  E-value=0.15  Score=41.97  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=23.7

Q ss_pred             CC-ccEEEEEccChhHHHHHHHHHcCCC-eEEE
Q 024565            1 MG-KVKIGINGFGRIGRLVARVILQRDD-VELV   31 (265)
Q Consensus         1 m~-~i~vgI~G~G~~G~~l~~~L~~~p~-~el~   31 (265)
                      |. |.||+|||+|..|...+..|.+... .+++
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~   33 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVT   33 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEE
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEE
Confidence            54 5689999999999999988876543 4544

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=90.67  E-value=0.11  Score=42.71  Aligned_cols=32  Identities=25%  Similarity=0.434  Sum_probs=27.4

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      |||-|.|+ |++|+.+++.|.++.+.++.++..
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~   33 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDI   33 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            48999999 999999999998887778877743

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.46  E-value=0.79  Score=37.03  Aligned_cols=31  Identities=23%  Similarity=0.368  Sum_probs=26.9

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      +.||-|.|+ |++|+.+++.|.+. +.+|+++.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~-g~~V~~~d   32 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMD-GHEVTVVD   32 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEe
Confidence            478999999 99999999999887 47888774

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.19  E-value=0.15  Score=38.93  Aligned_cols=29  Identities=24%  Similarity=0.371  Sum_probs=24.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .+|||+|+|.+|+++++.+... ++++.+.
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~f-g~~v~~~   73 (188)
T d1sc6a1          45 KKLGIIGYGHIGTQLGILAESL-GMYVYFY   73 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             eEEEEeecccchhhhhhhcccc-cceEeec
Confidence            5899999999999999988766 4776544

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.17  E-value=0.1  Score=41.52  Aligned_cols=34  Identities=26%  Similarity=0.300  Sum_probs=28.7

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ++.||-|.|+ |++|+.+++.|.+.. .+|.++...
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G-~~V~~l~R~   36 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRE   36 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEECC
Confidence            4689999999 999999999999874 688777643

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=90.08  E-value=0.16  Score=38.86  Aligned_cols=29  Identities=31%  Similarity=0.534  Sum_probs=24.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      .++||+|+|.+|+++++.+... ++++.+.
T Consensus        48 ~tvgIiG~G~IG~~va~~l~~f-g~~v~~~   76 (191)
T d1gdha1          48 KTLGIYGFGSIGQALAKRAQGF-DMDIDYF   76 (191)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCEEEEE
T ss_pred             cceEEeecccchHHHHHHHHhh-ccccccc
Confidence            6899999999999999998876 3776543

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=90.06  E-value=0.12  Score=42.87  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=26.8

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcC-CCeEEEEE
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQR-DDVELVAV   33 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~-p~~el~~v   33 (265)
                      +||||-|.|+ |++|..+++.|.++ .++.++.+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~   34 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL   34 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence            4799999999 99999999999776 34776655

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.98  E-value=0.13  Score=36.28  Aligned_cols=30  Identities=10%  Similarity=0.035  Sum_probs=24.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .|+.|+|+|++|.|++..|.+.. .++.-+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG-~~Vtii~   50 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIG-LDVTVMV   50 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CeEEEECCCccHHHHHHHHhhcC-CeEEEEE
Confidence            58999999999999999999874 5555553

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=89.95  E-value=0.19  Score=35.29  Aligned_cols=31  Identities=26%  Similarity=0.247  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ..||.|+|+|++|.|++..|.+. +.++.-|-
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~   60 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTA-GVHVSLVE   60 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CCeEEEECcchhHHHHHHHhhcc-cceEEEEe
Confidence            36899999999999999999877 46666554

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.84  E-value=0.18  Score=35.54  Aligned_cols=30  Identities=17%  Similarity=0.259  Sum_probs=25.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .||.|+|+|++|.|++..|.+. +.+++-|-
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~-g~~Vtlie   60 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKA-GKKVTVID   60 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CEEEEECChHHHHHHHHHhhcc-ceEEEEEE
Confidence            5899999999999999999987 46665553

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.84  E-value=0.19  Score=34.89  Aligned_cols=30  Identities=20%  Similarity=0.231  Sum_probs=24.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .||.|+|+|++|.|++..|.+.. .+++-+.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G-~~Vtlve   51 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLG-AKTHLFE   51 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEECCChhhHHHHHHhhccc-cEEEEEe
Confidence            68999999999999999998874 5655443

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.81  E-value=0.13  Score=37.78  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=20.4

Q ss_pred             EEEEEccChhHHHHHHHHHcCC
Q 024565            5 KIGINGFGRIGRLVARVILQRD   26 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p   26 (265)
                      |||++|.|.||..+++.|.++.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g   23 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRF   23 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCC
Confidence            7999999999999999999764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.77  E-value=0.19  Score=35.41  Aligned_cols=31  Identities=16%  Similarity=0.052  Sum_probs=25.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      .|+.|+|+|++|.|++..|.+. +.+++-+..
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~-G~~Vtlv~~   53 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSAL-GSKTSLMIR   53 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECS
T ss_pred             CEEEEEcCCccHHHHHHHHhcC-CcEEEEEee
Confidence            6899999999999999999877 466655543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=89.73  E-value=0.16  Score=42.02  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=29.6

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ++.+|.|.|+ |++|+.+++.|.++. .+|.+++...
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G-~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCC-CeEEEEECCc
Confidence            3678999999 999999999999884 7888887543

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=89.68  E-value=0.3  Score=36.79  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=20.5

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcC
Q 024565            3 KVKIGINGF-GRIGRLVARVILQR   25 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~   25 (265)
                      .+||.|+|| |.+|..++.+|.+.
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g   47 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASG   47 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcC
Confidence            579999999 99999999988764

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.50  E-value=0.17  Score=41.94  Aligned_cols=31  Identities=29%  Similarity=0.423  Sum_probs=26.2

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      -|||-|.|+ |++|..+++.|.+.. .+|+++.
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g-~~V~~~d   46 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEG-HYVIASD   46 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEe
Confidence            389999999 999999999999875 5776653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.47  E-value=0.39  Score=35.44  Aligned_cols=93  Identities=13%  Similarity=0.059  Sum_probs=51.1

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCC
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP   84 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~   84 (265)
                      +|.|+|+|-+|...+.++.... .+.+.+.+.+..-..++  .++         +     ..  -     .+.  ...+.
T Consensus        31 tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a--k~l---------G-----a~--~-----~i~--~~~~~   84 (176)
T d2fzwa2          31 VCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARA--KEF---------G-----AT--E-----CIN--PQDFS   84 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHH--HHH---------T-----CS--E-----EEC--GGGCS
T ss_pred             EEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHH--HHh---------C-----Cc--E-----EEe--CCchh
Confidence            6899999889999988888774 44445555432221111  110         0     00  0     010  00111


Q ss_pred             CCC-----CcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565           85 EEI-----PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII  123 (265)
Q Consensus        85 ~~~-----~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi  123 (265)
                      +..     .....++|+||+|++.....+.+..+++.|...+++
T Consensus        85 ~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          85 KPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             SCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred             hHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEE
Confidence            110     001246899999999887777777777766544444

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.30  E-value=0.2  Score=35.77  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ..||.|+|+|++|.|++..|.+. +.++.-|-
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~-g~~Vtvie   65 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKA-NMHVTLLD   65 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEC
T ss_pred             CCEEEEECCchHHHHHHHHHHhh-Ccceeeee
Confidence            36899999999999999999887 47766554

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=89.09  E-value=0.19  Score=38.27  Aligned_cols=30  Identities=33%  Similarity=0.410  Sum_probs=24.4

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      -.+|||+|+|.+|+++++.|... ++++.+.
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~f-g~~v~~~   73 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPF-DVHLHYT   73 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGG-TCEEEEE
T ss_pred             ccceeeccccccchhhhhhhhcc-CceEEEE
Confidence            36899999999999999999866 3665444

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.87  E-value=0.22  Score=34.96  Aligned_cols=30  Identities=20%  Similarity=0.119  Sum_probs=24.8

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .|+.|+|+|++|.|++..|.+. +.+++-|.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~-g~~Vtlv~   62 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEA-GYHVKLIH   62 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT-TCEEEEEC
T ss_pred             CcEEEECCcHHHHHHHHHhhcc-cceEEEEe
Confidence            5899999999999999999877 46665443

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.86  E-value=0.16  Score=37.14  Aligned_cols=27  Identities=30%  Similarity=0.325  Sum_probs=22.2

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      ||.|+|+|++|.+++..|.+.  .+++-+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~~--~~Vtvv   28 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQT--YEVTVI   28 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT--SEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHcC--CCEEEE
Confidence            899999999999999999753  565544

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=88.72  E-value=0.16  Score=39.92  Aligned_cols=27  Identities=26%  Similarity=0.357  Sum_probs=23.5

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELV   31 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~   31 (265)
                      |||+|||+|..|...+..|.++. ++++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G-~~V~   27 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRG-TDAV   27 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTT-CCEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-CCEE
Confidence            58999999999999999999874 6654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=88.70  E-value=0.19  Score=40.70  Aligned_cols=29  Identities=41%  Similarity=0.634  Sum_probs=25.0

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEE
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVEL   30 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el   30 (265)
                      ++.||-|.|+ |++|+.+++.|.+.++..+
T Consensus         1 ~kkkIlITG~tGfiG~~l~~~L~~~g~~vi   30 (315)
T d1e6ua_           1 AKQRVFIAGHRGMVGSAIRRQLEQRGDVEL   30 (315)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCcCEEE
Confidence            3679999999 9999999999998875543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=88.63  E-value=0.83  Score=33.63  Aligned_cols=31  Identities=16%  Similarity=0.230  Sum_probs=23.9

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      +|.|+|+|-+|...+.++.....-+++++..
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~   61 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDI   61 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecC
Confidence            6999999889999999888875455555543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.44  E-value=0.19  Score=35.57  Aligned_cols=32  Identities=28%  Similarity=0.131  Sum_probs=26.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      ..++.|+|+|++|.|++..+.+.. .++.-+..
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G-~~Vtive~   57 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLG-SRLDVVEM   57 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHT-CEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCC-CEEEEEEe
Confidence            368999999999999999998773 67666643

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.24  E-value=0.27  Score=37.31  Aligned_cols=33  Identities=15%  Similarity=0.245  Sum_probs=27.0

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcCC-CeEEEEEec
Q 024565            3 KVKIGINGF-GRIGRLVARVILQRD-DVELVAVND   35 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~p-~~el~~v~~   35 (265)
                      |.+|-|.|+ |.+|+.+++.|.+.. .+.+..+..
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R   37 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVR   37 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEES
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcC
Confidence            589999999 999999999998764 466666543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=88.23  E-value=0.27  Score=34.09  Aligned_cols=30  Identities=7%  Similarity=-0.066  Sum_probs=24.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      .||.|+|+|++|.|++..|.+.. .++.-+.
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g-~~vt~i~   52 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATG-RRTVMLV   52 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcc-hhheEee
Confidence            68999999999999999998773 5555544

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=88.18  E-value=0.49  Score=35.19  Aligned_cols=31  Identities=10%  Similarity=0.038  Sum_probs=24.0

Q ss_pred             EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      +|.|+|+|.+|...+..+.... .+.+.+.|.
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~   60 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGT   60 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHT-CSEEEEECS
T ss_pred             EEEEECCCchhHHHHHHHHHcC-CceeeccCC
Confidence            6999999999999999888775 444445554

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=88.15  E-value=0.19  Score=37.47  Aligned_cols=34  Identities=18%  Similarity=0.101  Sum_probs=27.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC-CCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQR-DDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~   36 (265)
                      +-+|.|+|+|.+|.+++..|.+. .++.++-+.+.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            46799999999999999999765 46777777654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.10  E-value=0.18  Score=37.64  Aligned_cols=34  Identities=15%  Similarity=0.143  Sum_probs=25.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      ..||+|||+|.+|...++.|.++. ++-+.|....
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G-~~~V~v~E~~   37 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLG-YSDITIFEKQ   37 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTT-CCCEEEEESS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCC-CCeEEEEEec
Confidence            469999999999999999999874 4323344443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.05  E-value=0.43  Score=30.91  Aligned_cols=31  Identities=16%  Similarity=0.299  Sum_probs=25.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |++|||+|.|-.|+-+..+.... ++++..+.
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~L-G~~v~vld   31 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPL-GIAVWPVG   31 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGG-TEEEEEEC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHc-CCEEEEEc
Confidence            37999999999999999877766 48766554

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.00  E-value=0.23  Score=34.33  Aligned_cols=30  Identities=17%  Similarity=0.150  Sum_probs=24.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      +.|+.|+|+|++|.|++..|.+.. .+++-+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g-~~Vtlv   50 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLG-AQVSVV   50 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHT-CEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcc-cceEEE
Confidence            368999999999999999998773 665544

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=87.90  E-value=0.23  Score=40.83  Aligned_cols=30  Identities=20%  Similarity=0.412  Sum_probs=26.1

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |||-|.|+ |++|+.+++.|.+.. .+|.++.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g-~~V~~~d   31 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEE
Confidence            57999999 999999999999884 7777763

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.89  E-value=0.22  Score=36.62  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=23.4

Q ss_pred             CC-ccEEEEEcc-ChhHHHHHHHHHcCCC
Q 024565            1 MG-KVKIGINGF-GRIGRLVARVILQRDD   27 (265)
Q Consensus         1 m~-~i~vgI~G~-G~~G~~l~~~L~~~p~   27 (265)
                      |+ ++||.|+|+ |.+|..++.+|...+-
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhccc
Confidence            65 579999999 9999999999987753

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.71  E-value=0.24  Score=34.83  Aligned_cols=31  Identities=26%  Similarity=0.244  Sum_probs=25.8

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ..|+.|+|+|++|.|++..+.+.. .+++-+.
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G-~~Vtvi~   55 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIG-SEVTVVE   55 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHT-CEEEEEC
T ss_pred             CCeEEEEccchHHHHHHHHHHhcC-CeEEEEE
Confidence            358999999999999999998874 6766554

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.50  E-value=0.36  Score=37.74  Aligned_cols=34  Identities=24%  Similarity=0.191  Sum_probs=26.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      +++|.|||+|..|..++.+|.++. ++-+.|....
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~G-i~~V~V~Er~   34 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAG-IGKVTLLESS   34 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCC-CCeEEEEeCC
Confidence            479999999999999999999885 5334454443

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.49  E-value=0.3  Score=40.09  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=26.9

Q ss_pred             CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      |+ .||-|.|+ |++|..+++.|.+.. .+++++-
T Consensus         1 M~-kKILITG~tGfIGs~lv~~Ll~~g-~~V~~ld   33 (346)
T d1ek6a_           1 MA-EKVLVTGGAGYIGSHTVLELLEAG-YLPVVID   33 (346)
T ss_dssp             CC-SEEEEETTTSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CC-CeEEEECCCcHHHHHHHHHHHHCc-CEEEEEE
Confidence            65 68999999 999999999999874 5777763

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=86.34  E-value=0.45  Score=35.24  Aligned_cols=33  Identities=15%  Similarity=0.234  Sum_probs=26.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .||.|+|+|-+++.++..|.+.. ++-+.|..++
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~g-~~~I~I~nR~   50 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNSG-FEKLKIYARN   50 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTT-CCCEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CCEEEEeccc
Confidence            58999999999999999998874 5445566664

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.97  E-value=0.41  Score=36.83  Aligned_cols=31  Identities=19%  Similarity=0.252  Sum_probs=24.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHc-CCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQ-RDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~-~p~~el~~v   33 (265)
                      +.||+|||+|..|...++.|.+ ..+.+++-+
T Consensus         1 ~~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~   32 (230)
T d1cjca2           1 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIY   32 (230)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEE
T ss_pred             CCeEEEECccHHHHHHHHHHHhcCCCCeEEEE
Confidence            3699999999999999998864 455666544

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.88  E-value=0.22  Score=39.69  Aligned_cols=30  Identities=23%  Similarity=0.454  Sum_probs=25.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      +.+|.|||+|..|..++..|.++. ++++-+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G-~~v~vl   31 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAG-IDNVIL   31 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHT-CCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC-CCEEEE
Confidence            468999999999999999999874 665544

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.86  E-value=0.44  Score=36.02  Aligned_cols=30  Identities=40%  Similarity=0.585  Sum_probs=24.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      ..++||+|+|.+|+++++.+.... +++.+.
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~fg-~~v~~~   73 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAFG-AYVVAY   73 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTT-CEEEEE
T ss_pred             ceeeeeccccchhHHHHHHhhhcc-ceEEee
Confidence            368999999999999999988763 776554

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=85.76  E-value=0.4  Score=37.29  Aligned_cols=30  Identities=17%  Similarity=0.145  Sum_probs=25.5

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      ..||.|||+|..|..++..|.+. +++++-+
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~-G~~v~v~   33 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDA-GVDVDVY   33 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCCEEEE
Confidence            46999999999999999999887 5776644

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.76  E-value=0.26  Score=36.57  Aligned_cols=34  Identities=15%  Similarity=0.064  Sum_probs=20.2

Q ss_pred             cEEEEEccChhHHHHHH--HHHcCC--CeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVAR--VILQRD--DVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~--~L~~~p--~~el~~v~~~~   37 (265)
                      |||+|+|+|.+|...+-  ++....  .+.-+.+.|..
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did   38 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDID   38 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecC
Confidence            68999999877754442  232332  24445666653

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.72  E-value=0.23  Score=38.18  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             cEEEEEccChhHHHHHHHHHcC
Q 024565            4 VKIGINGFGRIGRLVARVILQR   25 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~   25 (265)
                      |||+|||+|.+|...+..|.+.
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~   22 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHER   22 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHC
Confidence            5899999999999999999875

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=85.22  E-value=0.49  Score=34.72  Aligned_cols=33  Identities=24%  Similarity=0.126  Sum_probs=26.7

Q ss_pred             cEEEEEccChhHHHHHHHHHcC-CCeEEEEEecc
Q 024565            4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDP   36 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~   36 (265)
                      .||.|+|+|.+|.+++..|.+. +++.++-+.+.
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            5899999999999999999876 56666655543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=85.21  E-value=0.75  Score=34.12  Aligned_cols=32  Identities=22%  Similarity=0.203  Sum_probs=24.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .+|.|+|+|-+++.++..|.+.. -++. |..++
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~-~~i~-I~nR~   50 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQ-QNIV-LANRT   50 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTT-CEEE-EEESS
T ss_pred             CEEEEECCcHHHHHHHHHHcccC-ceee-eccch
Confidence            58999999999999999998765 4544 44453

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=85.16  E-value=0.49  Score=36.33  Aligned_cols=32  Identities=16%  Similarity=0.242  Sum_probs=25.3

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ..||.|||+|.+|...+..|.++. .+++ |.++
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G-~~V~-vier   37 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKG-YSVH-ILAR   37 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTT-CEEE-EEES
T ss_pred             CCcEEEECccHHHHHHHHHHHHCC-CCEE-EEeC
Confidence            368999999999999999999873 4654 4443

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=85.12  E-value=0.55  Score=35.32  Aligned_cols=30  Identities=20%  Similarity=0.222  Sum_probs=25.2

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      +.||+|||+|..|.+.++.|.++. .+++-+
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G-~~Vtl~   72 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARG-HQVTLF   72 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTT-CEEEEE
T ss_pred             CcEEEEECccHHHHHHHHHHHhhc-cceEEE
Confidence            579999999999999999998885 565444

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=85.03  E-value=0.46  Score=36.99  Aligned_cols=29  Identities=14%  Similarity=0.213  Sum_probs=24.2

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      +||+|||+|..|...+..|.+.. ++++-+
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G-~~V~vl   30 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHG-LNVTVF   30 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTS-CEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC-CCEEEE
Confidence            68999999999999999998874 675433

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.47  E-value=0.36  Score=40.30  Aligned_cols=30  Identities=27%  Similarity=0.448  Sum_probs=26.1

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |||=|-|+ |++|..+++.|+++.+.+|+++
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~   33 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIV   33 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEE
Confidence            58999999 9999999999987656788776

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=83.94  E-value=0.96  Score=33.29  Aligned_cols=32  Identities=25%  Similarity=0.296  Sum_probs=26.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .+|-|+|+|-+++.++..|.+.. ++ +.|..++
T Consensus        19 k~vlIlGaGGaarai~~al~~~g-~~-i~I~nRt   50 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLD-CA-VTITNRT   50 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CE-EEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHhcccc-eE-EEeccch
Confidence            58999999999999999999875 67 5565554

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.34  E-value=1.2  Score=30.58  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=25.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      ..||||+|.|-.|+.++....+. ++++... |+
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~l-G~~v~v~-d~   42 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRL-GVEVIAV-DR   42 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTT-TCEEEEE-ES
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHC-CCEEEEE-cC
Confidence            46899999999999999988777 4777544 44

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=83.27  E-value=0.63  Score=38.00  Aligned_cols=30  Identities=23%  Similarity=0.350  Sum_probs=25.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      +.||.|||+|..|...++.|.+. +.+|.-+
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~-G~~V~vi   31 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEK-GHQVHII   31 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhC-CCCEEEE
Confidence            57999999999999999999987 4666533

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.07  E-value=0.22  Score=36.81  Aligned_cols=30  Identities=13%  Similarity=0.331  Sum_probs=23.3

Q ss_pred             cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE
Q 024565            4 VKIGINGF-GRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      -+|.|+|+ |.+|...+.++......+++.+
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~   59 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGV   59 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CEEEEEeccccceeeeeeccccccccccccc
Confidence            37999998 9999999998887754454444

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.03  E-value=0.54  Score=34.56  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=24.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVND   35 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~   35 (265)
                      -+|.|+|+|.+|...+.++... +.+++++..
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~   59 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAM-GAETYVISR   59 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCEEEEEES
T ss_pred             CEEEEECCCCcchhHHHHhhhc-ccccccccc
Confidence            4799999999999988876655 588776544

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.97  E-value=0.59  Score=36.88  Aligned_cols=30  Identities=23%  Similarity=0.227  Sum_probs=25.1

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      +.||.|||+|..|...+..|.+.. ++|+-+
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G-~~V~Vl   34 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFG-MDVTLL   34 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-CCEEEE
Confidence            468999999999999999999884 665533

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.62  E-value=0.25  Score=36.21  Aligned_cols=23  Identities=17%  Similarity=0.257  Sum_probs=20.3

Q ss_pred             ccEEEEEcc-ChhHHHHHHHHHcC
Q 024565            3 KVKIGINGF-GRIGRLVARVILQR   25 (265)
Q Consensus         3 ~i~vgI~G~-G~~G~~l~~~L~~~   25 (265)
                      ++||+|+|| |.+|..++..|.+.
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~   26 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNG   26 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHH
Confidence            589999998 99999999988753

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.62  E-value=0.52  Score=38.43  Aligned_cols=32  Identities=22%  Similarity=0.456  Sum_probs=26.8

Q ss_pred             cEEE-EEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565            4 VKIG-INGF-GRIGRLVARVILQRDDVELVAVNDP   36 (265)
Q Consensus         4 i~vg-I~G~-G~~G~~l~~~L~~~p~~el~~v~~~   36 (265)
                      .||+ |.|+ |++|+.+++.|.+. +.+|.++...
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~-g~~V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEK-GYEVHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHC-cCEEEEEECC
Confidence            4785 7799 99999999999987 5888888643

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.60  E-value=0.83  Score=36.03  Aligned_cols=34  Identities=29%  Similarity=0.531  Sum_probs=30.0

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .+|+|-|+|.+|..+++.|.+.-...++++.|..
T Consensus        33 ~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~   66 (239)
T d1gtma1          33 KTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSK   66 (239)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCcceeeccccc
Confidence            6899999999999999999766578999998864

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=82.32  E-value=0.46  Score=32.72  Aligned_cols=32  Identities=13%  Similarity=-0.075  Sum_probs=24.0

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEe
Q 024565            3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVN   34 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~   34 (265)
                      ..|+.|+|+|++|.|++..|.+.  ...++.-+.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~   51 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAY   51 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceec
Confidence            36899999999999999877643  345655554

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=82.10  E-value=0.51  Score=37.48  Aligned_cols=30  Identities=20%  Similarity=0.204  Sum_probs=24.9

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      ..||+|||+|..|...+..|.++. ++++-+
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G-~~V~vl   59 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAG-HQVTVL   59 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHT-CEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CCEEEE
Confidence            469999999999999999999874 675533

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=81.87  E-value=4.2  Score=29.32  Aligned_cols=31  Identities=16%  Similarity=0.256  Sum_probs=22.6

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      -+|.|+|+|-+|...+..+.....-+++++.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~   60 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVD   60 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeec
Confidence            3699999988998888887766544554443

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.75  E-value=0.59  Score=38.17  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=26.6

Q ss_pred             CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565            2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVN   34 (265)
Q Consensus         2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~   34 (265)
                      ++.+|=|.|+ |++|+.+++.|.++. .++.++.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g-~~V~~~d   47 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLD   47 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEE
Confidence            3467888899 999999999999884 6887764

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=81.38  E-value=0.98  Score=35.61  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=29.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF   37 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~   37 (265)
                      .+|+|-|+|.+|..+++.|.+. +..+++|.|..
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~~-Gakvv~vsD~~   64 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEKM-GAKVIAVSDIN   64 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCEEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCeEEEeeccc
Confidence            6899999999999999999988 59999999864

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=81.38  E-value=0.56  Score=35.42  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=20.5

Q ss_pred             EEEEEccChhHHHHHHHHHcCC
Q 024565            5 KIGINGFGRIGRLVARVILQRD   26 (265)
Q Consensus         5 ~vgI~G~G~~G~~l~~~L~~~p   26 (265)
                      ||.|||+|..|...+..|.+..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G   23 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAG   23 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTT
T ss_pred             CEEEECCcHHHHHHHHHHHhCC
Confidence            7999999999999999999874

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.34  E-value=0.99  Score=33.38  Aligned_cols=27  Identities=15%  Similarity=0.337  Sum_probs=23.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQRDDVELV   31 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~p~~el~   31 (265)
                      .+|+|+|+|.+|+.+++.+.... ++++
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G-~~V~   51 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFG-ARVI   51 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEE
T ss_pred             CEEEEeccccccHHHHHHHHhCC-CeeE
Confidence            68999999999999999999884 6544

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.04  E-value=0.49  Score=36.22  Aligned_cols=23  Identities=26%  Similarity=0.264  Sum_probs=20.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcC
Q 024565            3 KVKIGINGFGRIGRLVARVILQR   25 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~   25 (265)
                      ++||+|||+|..|...+..|.++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~   24 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKA   24 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHc
Confidence            47999999999999999998764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=80.96  E-value=1.5  Score=29.60  Aligned_cols=22  Identities=9%  Similarity=-0.022  Sum_probs=20.3

Q ss_pred             cEEEEEccChhHHHHHHHHHcC
Q 024565            4 VKIGINGFGRIGRLVARVILQR   25 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~   25 (265)
                      .||.|+|.|..|..++..|.+.
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~   54 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPV   54 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTT
T ss_pred             CeEEEECCCCCHHHHHHHHHHh
Confidence            6899999999999999999876

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.61  E-value=4  Score=26.60  Aligned_cols=84  Identities=18%  Similarity=0.193  Sum_probs=47.6

Q ss_pred             cEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565            4 VKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR   82 (265)
Q Consensus         4 i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   82 (265)
                      |||=++|-|-+|.. |+++|.+.. ++|. -+|..... .... |               +..|         ++++...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G-~~Vs-GSD~~~~~-~t~~-L---------------~~~G---------i~i~~gh   53 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNG-NDVY-GSNIEETE-RTAY-L---------------RKLG---------IPIFVPH   53 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEE-EECSSCCH-HHHH-H---------------HHTT---------CCEESSC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCC-CeEE-EEeCCCCh-hHHH-H---------------HHCC---------CeEEeee
Confidence            68899999777774 556666664 5543 33433111 1111 1               0112         3344445


Q ss_pred             CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCC
Q 024565           83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK  119 (265)
Q Consensus        83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~  119 (265)
                      +++.+    .+.|+|+-++.-...-.....+.+.|++
T Consensus        54 ~~~~i----~~~d~vV~SsAI~~~npel~~A~~~gIp   86 (89)
T d1j6ua1          54 SADNW----YDPDLVIKTPAVRDDNPEIVRARMERVP   86 (89)
T ss_dssp             CTTSC----CCCSEEEECTTCCTTCHHHHHHHHTTCC
T ss_pred             ccccc----CCCCEEEEecCcCCCCHHHHHHHHcCCC
Confidence            66666    5789988876644444456678888874

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.36  E-value=0.56  Score=32.38  Aligned_cols=30  Identities=17%  Similarity=0.067  Sum_probs=21.9

Q ss_pred             cEEEEEccChhHHHHHHHHHcC--CCeEEEEE
Q 024565            4 VKIGINGFGRIGRLVARVILQR--DDVELVAV   33 (265)
Q Consensus         4 i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v   33 (265)
                      .|+.|+|+|++|.|++..+.+.  .+.++.-|
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli   52 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLC   52 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEE
Confidence            6899999999999999776543  23444444

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.26  E-value=0.69  Score=37.34  Aligned_cols=30  Identities=17%  Similarity=0.234  Sum_probs=24.7

Q ss_pred             ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565            3 KVKIGINGFGRIGRLVARVILQRDDVELVAV   33 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v   33 (265)
                      |.+|.|||+|..|..+++.|.++ +.+|+-+
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~-g~~V~ii   30 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKL-NKKVLVI   30 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG-TCCEEEE
T ss_pred             CccEEEECCcHHHHHHHHHHHhC-CCcEEEE
Confidence            48999999999999999999876 3555433

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=80.02  E-value=0.83  Score=33.93  Aligned_cols=33  Identities=24%  Similarity=0.268  Sum_probs=21.3

Q ss_pred             ccEEEEEccChhHHH--HHHHHHcCCCe---EEEEEecc
Q 024565            3 KVKIGINGFGRIGRL--VARVILQRDDV---ELVAVNDP   36 (265)
Q Consensus         3 ~i~vgI~G~G~~G~~--l~~~L~~~p~~---el~~v~~~   36 (265)
                      .|||+|+|+|.+|..  ++..|...+.+   |+ .+.|.
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~ei-vL~Di   39 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTV-TLMDI   39 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEE-EEECS
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEE-EEEeC
Confidence            589999999999853  44445554443   44 44554