Citrus Sinensis ID: 024570

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLYNVLKK
ccHHHHHHHHHHHHHHHHcccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcc
ccHHHHHHHHHHHHHHHHHccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcc
MSVIDILTRVDSICKkydkydvekqretnvsgDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVlalpdriqaipdgtaaapkqsggwgasasrteikfdsdgrfddeyfQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMneevdrqvplmdeiDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLYNVLKK
msvidiltrvdsickkydkydvekqretnvsgddAFARLYGAVEADIEAALQkaesasneknrasVVALNAEIRRTkarlleevpklqrlaikkvkglsteelVARNDLVLALPDRIQAIPdgtaaapkqsggwgasasrteIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDratadlkntnvrlkhtvtqlrssrnFCIDIVLLCIILGIAAYLYNVLKK
MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLYNVLKK
**VIDILTRVDSICKKYDKYDVEK****NVSGDDAFARLYGAVEADIE*****************VVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI***************************************************************************************************ADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLYNVL**
*SVIDILTRVDSICKKYD*******************RLYGAVEADIE***********************EIRRTKARLLEEV************************LVLA********************************************************************DMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN***********LRSSRNFCIDIVLLCIILGIAAYLYNVLKK
MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAAL************ASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDG****************RTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLYNVLKK
*SVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPD***************************RFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLYNVLKK
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MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLxxxxxxxxxxxxxxxxxxxxxKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLYNVLKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query265 2.2.26 [Sep-21-2011]
Q9SF29266 Syntaxin-71 OS=Arabidopsi yes no 0.996 0.992 0.815 1e-126
Q94KK6267 Syntaxin-72 OS=Arabidopsi no no 0.992 0.985 0.672 1e-101
Q94KK5263 Syntaxin-73 OS=Arabidopsi no no 0.981 0.988 0.677 1e-92
Q54IX6250 Probable syntaxin-8B OS=D no no 0.716 0.76 0.241 1e-06
Q9LMG8263 Putative SNAP25 homologou no no 0.260 0.262 0.362 0.0003
Q9S7P9300 SNAP25 homologous protein no no 0.335 0.296 0.337 0.0008
>sp|Q9SF29|SYP71_ARATH Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1 Back     alignment and function desciption
 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/266 (81%), Positives = 239/266 (89%), Gaps = 2/266 (0%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           M+VIDILTRVDSICKKYDKYDV+KQRE N+SGDDAFARLYGA E  IE AL+KAE  + E
Sbjct: 1   MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
           KNRA+ VA+NAEIRRTKARL EEVPKLQRLA+K+VKGL+TEEL ARNDLVLALP RI+AI
Sbjct: 61  KNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAI 120

Query: 121 PDGTAAAPKQSGGWGASA--SRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQ 178
           PDGTA  PK +  W  S+  SR +IKFDSDGRFDD+YFQ++ ESSQFRQEYEMRK+KQ+Q
Sbjct: 121 PDGTAGGPKSTSAWTPSSTTSRPDIKFDSDGRFDDDYFQESNESSQFRQEYEMRKIKQEQ 180

Query: 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRS 238
           GLDMISEGLD LKNMA DMNEE+DRQVPLMDEIDTKVDRAT+DLKNTNVRLK TV QLRS
Sbjct: 181 GLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNTNVRLKDTVNQLRS 240

Query: 239 SRNFCIDIVLLCIILGIAAYLYNVLK 264
           SRNFCIDIVLLCI+LGIAAYLYNVLK
Sbjct: 241 SRNFCIDIVLLCIVLGIAAYLYNVLK 266
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q94KK6|SYP72_ARATH Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1 Back     alignment and function description
>sp|Q94KK5|SYP73_ARATH Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1 Back     alignment and function description
>sp|Q54IX6|STX8B_DICDI Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1 Back     alignment and function description
>sp|Q9LMG8|SNP30_ARATH Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=3 SV=1 Back     alignment and function description
>sp|Q9S7P9|SNP33_ARATH SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
255557036266 syntaxin, putative [Ricinus communis] gi 1.0 0.996 0.887 1e-135
225439930265 PREDICTED: syntaxin-71 [Vitis vinifera] 1.0 1.0 0.901 1e-129
449440087265 PREDICTED: syntaxin-71-like [Cucumis sat 1.0 1.0 0.879 1e-126
224138654265 predicted protein [Populus trichocarpa] 1.0 1.0 0.867 1e-126
449526944265 PREDICTED: syntaxin-71-like [Cucumis sat 1.0 1.0 0.875 1e-125
297829508266 hypothetical protein ARALYDRAFT_897138 [ 0.996 0.992 0.819 1e-125
18398623266 syntaxin-71 [Arabidopsis thaliana] gi|28 0.996 0.992 0.815 1e-125
449453330265 PREDICTED: syntaxin-71-like [Cucumis sat 1.0 1.0 0.875 1e-124
356548236265 PREDICTED: syntaxin-71-like [Glycine max 1.0 1.0 0.860 1e-124
356537535265 PREDICTED: syntaxin-71-like [Glycine max 1.0 1.0 0.856 1e-124
>gi|255557036|ref|XP_002519551.1| syntaxin, putative [Ricinus communis] gi|223541414|gb|EEF42965.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/266 (88%), Positives = 253/266 (95%), Gaps = 1/266 (0%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           MSVIDILTRVD+IC+KYD+YDVEKQ++ NVSGDDAFARLY  VEADIE+ALQKAE AS E
Sbjct: 1   MSVIDILTRVDAICQKYDRYDVEKQKDLNVSGDDAFARLYAVVEADIESALQKAEVASKE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
           KN+AS VALNAEIRRTKA+LLEEVPKLQRLA+KKVKGLSTEEL ARNDLVLALPDRIQAI
Sbjct: 61  KNKASAVALNAEIRRTKAKLLEEVPKLQRLAVKKVKGLSTEELTARNDLVLALPDRIQAI 120

Query: 121 PDGTAAAPKQSGGWGA-SASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQG 179
           PDG AAAPKQ+GGWGA SASRTEIKFDSDGRFD+EYFQ+ E SSQFRQEYEMR+MKQDQG
Sbjct: 121 PDGNAAAPKQTGGWGAPSASRTEIKFDSDGRFDNEYFQENETSSQFRQEYEMRRMKQDQG 180

Query: 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSS 239
           LDMIS+GLDTLK+MAHDMNEE+DRQVPLMDEIDTKVD+ATADLKNTNVRLK TV QLRSS
Sbjct: 181 LDMISKGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDKATADLKNTNVRLKDTVNQLRSS 240

Query: 240 RNFCIDIVLLCIILGIAAYLYNVLKK 265
           RNFCIDIVLLCIILGIAAYLYNVLKK
Sbjct: 241 RNFCIDIVLLCIILGIAAYLYNVLKK 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225439930|ref|XP_002280272.1| PREDICTED: syntaxin-71 [Vitis vinifera] gi|297741579|emb|CBI32711.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449440087|ref|XP_004137816.1| PREDICTED: syntaxin-71-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224138654|ref|XP_002322868.1| predicted protein [Populus trichocarpa] gi|222867498|gb|EEF04629.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449526944|ref|XP_004170473.1| PREDICTED: syntaxin-71-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297829508|ref|XP_002882636.1| hypothetical protein ARALYDRAFT_897138 [Arabidopsis lyrata subsp. lyrata] gi|297328476|gb|EFH58895.1| hypothetical protein ARALYDRAFT_897138 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18398623|ref|NP_566354.1| syntaxin-71 [Arabidopsis thaliana] gi|28380165|sp|Q9SF29.1|SYP71_ARATH RecName: Full=Syntaxin-71; Short=AtSYP71 gi|6682251|gb|AAF23303.1|AC016661_28 unknown protein [Arabidopsis thaliana] gi|13811648|gb|AAK40225.1|AF355757_1 syntaxin of plants 71 [Arabidopsis thaliana] gi|19699303|gb|AAL91262.1| AT3g09740/F11F8_33 [Arabidopsis thaliana] gi|87116600|gb|ABD19664.1| At3g09740 [Arabidopsis thaliana] gi|332641286|gb|AEE74807.1| syntaxin-71 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449453330|ref|XP_004144411.1| PREDICTED: syntaxin-71-like [Cucumis sativus] gi|449500071|ref|XP_004160996.1| PREDICTED: syntaxin-71-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356548236|ref|XP_003542509.1| PREDICTED: syntaxin-71-like [Glycine max] Back     alignment and taxonomy information
>gi|356537535|ref|XP_003537282.1| PREDICTED: syntaxin-71-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
TAIR|locus:2075054266 SYP71 "syntaxin of plants 71" 0.996 0.992 0.815 3.6e-112
TAIR|locus:2078282267 SYP72 "syntaxin of plants 72" 0.992 0.985 0.672 3e-92
DICTYBASE|DDB_G0289063271 DDB_G0289063 [Dictyostelium di 0.962 0.940 0.271 1.5e-14
DICTYBASE|DDB_G0288439250 syn8B "putative t-SNARE family 0.784 0.832 0.244 5.3e-11
DICTYBASE|DDB_G0275429152 syn8A "t-SNARE family protein" 0.381 0.664 0.320 5.5e-08
CGD|CAL0001470266 orf19.2411 [Candida albicans ( 0.433 0.432 0.279 5.6e-07
TAIR|locus:2014824263 SNAP30 "soluble N-ethylmaleimi 0.686 0.692 0.247 1.2e-06
ZFIN|ZDB-GENE-030131-858256 stx6 "syntaxin 6" [Danio rerio 0.781 0.808 0.251 7.9e-06
TAIR|locus:2019858233 SYP52 "syntaxin of plants 52" 0.735 0.836 0.254 1.3e-05
UNIPROTKB|A2VE18255 STX6 "Uncharacterized protein" 0.867 0.901 0.236 1.3e-05
TAIR|locus:2075054 SYP71 "syntaxin of plants 71" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1107 (394.7 bits), Expect = 3.6e-112, P = 3.6e-112
 Identities = 217/266 (81%), Positives = 239/266 (89%)

Query:     1 MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
             M+VIDILTRVDSICKKYDKYDV+KQRE N+SGDDAFARLYGA E  IE AL+KAE  + E
Sbjct:     1 MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60

Query:    61 KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
             KNRA+ VA+NAEIRRTKARL EEVPKLQRLA+K+VKGL+TEEL ARNDLVLALP RI+AI
Sbjct:    61 KNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAI 120

Query:   121 PDGTAAAPKQSGGWGASA--SRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQ 178
             PDGTA  PK +  W  S+  SR +IKFDSDGRFDD+YFQ++ ESSQFRQEYEMRK+KQ+Q
Sbjct:   121 PDGTAGGPKSTSAWTPSSTTSRPDIKFDSDGRFDDDYFQESNESSQFRQEYEMRKIKQEQ 180

Query:   179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRS 238
             GLDMISEGLD LKNMA DMNEE+DRQVPLMDEIDTKVDRAT+DLKNTNVRLK TV QLRS
Sbjct:   181 GLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNTNVRLKDTVNQLRS 240

Query:   239 SRNFCIDIVLLCIILGIAAYLYNVLK 264
             SRNFCIDIVLLCI+LGIAAYLYNVLK
Sbjct:   241 SRNFCIDIVLLCIVLGIAAYLYNVLK 266
GO:0005484 "SNAP receptor activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0008565 "protein transporter activity" evidence=TAS
GO:0016021 "integral to membrane" evidence=TAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006605 "protein targeting" evidence=RCA
TAIR|locus:2078282 SYP72 "syntaxin of plants 72" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289063 DDB_G0289063 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288439 syn8B "putative t-SNARE family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275429 syn8A "t-SNARE family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0001470 orf19.2411 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
TAIR|locus:2014824 SNAP30 "soluble N-ethylmaleimide-sensitive factor adaptor protein 30" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-858 stx6 "syntaxin 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2019858 SYP52 "syntaxin of plants 52" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A2VE18 STX6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SF29SYP71_ARATHNo assigned EC number0.81570.99620.9924yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
pfam0573962 pfam05739, SNARE, SNARE domain 2e-12
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 2e-07
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 4e-07
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information 
 Score = 60.6 bits (148), Expect = 2e-12
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235
           +D+ L+ +   +  LK +  DM EEV+ Q  L+D ID  VD   + ++  N RLK     
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLKKAARY 60

Query: 236 LR 237
            +
Sbjct: 61  QK 62

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 99.97
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 99.39
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.36
PF0917797 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP 99.26
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.15
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.05
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 99.04
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.02
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.02
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 98.89
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 98.89
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 98.81
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 98.6
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 98.39
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 98.02
KOG2678244 consensus Predicted membrane protein [Function unk 97.8
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 97.3
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.17
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 97.1
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 96.79
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 96.5
KOG3208231 consensus SNARE protein GS28 [Intracellular traffi 96.13
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 95.79
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 95.49
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 95.17
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 94.62
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 94.51
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 93.94
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 93.38
PHA0281971 hypothetical protein; Provisional 91.41
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 91.19
PHA0284475 putative transmembrane protein; Provisional 91.08
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 90.89
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 90.32
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 90.24
PHA0305472 IMV membrane protein; Provisional 90.04
PHA0265081 hypothetical protein; Provisional 89.93
PF01519102 DUF16: Protein of unknown function DUF16; InterPro 88.54
COG406475 MtrG Tetrahydromethanopterin S-methyltransferase, 87.47
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 87.09
PRK10884206 SH3 domain-containing protein; Provisional 86.34
TIGR0114970 mtrG N5-methyltetrahydromethanopterin:coenzyme M m 85.85
PF1257572 DUF3753: Protein of unknown function (DUF3753); In 85.37
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 85.35
PHA0269270 hypothetical protein; Provisional 83.75
PF1116698 DUF2951: Protein of unknown function (DUF2951); In 82.63
PHA0297569 hypothetical protein; Provisional 82.47
PF0553175 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPr 81.86
PRK1476227 membrane protein; Provisional 81.64
PF1139543 DUF2873: Protein of unknown function (DUF2873); In 81.51
PF0421070 MtrG: Tetrahydromethanopterin S-methyltransferase, 80.99
PRK0102677 tetrahydromethanopterin S-methyltransferase subuni 80.74
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=99.97  E-value=1.2e-29  Score=219.15  Aligned_cols=218  Identities=22%  Similarity=0.262  Sum_probs=153.0

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhHHHhhh-hh-hhh-hhhhcHHHHHHHHHHHHHHHHHHHHH--Hhh---ccCCCHH
Q 024570           30 VSGDDAFARLYGAVEADIEAALQKAESASNE-KN-RAS-VVALNAEIRRTKARLLEEVPKLQRLA--IKK---VKGLSTE  101 (265)
Q Consensus        30 ~~~~DpF~~v~~~~~~~l~~l~~~~~~~~~e-rn-r~~-~~~~~~eir~~l~~l~~~l~~L~~~~--~~k---~~~lt~~  101 (265)
                      .+..|||+.++.++....+.+...+..+... +. ... .|.. ..||+   .+++.+.+|++..  ..+   .+++++.
T Consensus         2 ~~~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t-~~lr~---~i~~~~edl~~~~~il~~~~~~~~ide~   77 (235)
T KOG3202|consen    2 LSSEDPFFRVKNETLKLSEEIQGLYQRRSELLKDTGSDAEELT-SVLRR---SIEEDLEDLDELISILERNPSKFGIDEF   77 (235)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHH---HhHHHHHHHHHHHHHHHhCcccccCcHH
Confidence            3568999999999999999998775543332 22 222 2333 46663   4555555555543  222   4689999


Q ss_pred             HHHHHHHHHHHHHHHHHcccccccCCCCCC-----CCCCCCCCCcccccCCCCCCCchhhccchh-hHHHHHHHHHHHhh
Q 024570          102 ELVARNDLVLALPDRIQAIPDGTAAAPKQS-----GGWGASASRTEIKFDSDGRFDDEYFQQTEE-SSQFRQEYEMRKMK  175 (265)
Q Consensus       102 El~~R~~~v~~l~~~l~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~te~-~~~~~q~q~~~~~~  175 (265)
                      |+.+|+.++.+++.++..++..+...+..+     .+.+....+.  ..+      ..+...+.+ .+...+.|++++++
T Consensus        78 El~~R~~~i~~lr~q~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~--~~~------~~~~~~~~D~v~~~~~~qqqm~~e  149 (235)
T KOG3202|consen   78 ELSRRRRFIDNLRTQLRQMKSKMAMSGFANSNIRDILLGPEKSPN--LDE------AMSRASGLDNVQEIVQLQQQMLQE  149 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhcCCCCCCc--hhh------hHHHhhccCcHHHHHHHHHHHHHH
Confidence            999999999999999999998887522111     1111110000  000      000011112 35566788899999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 024570          176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGI  255 (265)
Q Consensus       176 QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~ll~vil~i  255 (265)
                      ||++||.|+++|+++|++|..||+||++|+.+||++++.||.|+++|.++++++.++.+..+++++||++ +++|+++++
T Consensus       150 QDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~i-l~l~~~~~l  228 (235)
T KOG3202|consen  150 QDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAI-LLLVGLLLL  228 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHH-HHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999955566678854 444444444


Q ss_pred             HHHHH
Q 024570          256 AAYLY  260 (265)
Q Consensus       256 ~~vl~  260 (265)
                      ++++|
T Consensus       229 vv~i~  233 (235)
T KOG3202|consen  229 VVIIF  233 (235)
T ss_pred             HHHHh
Confidence            45554

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PHA02819 hypothetical protein; Provisional Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information
>PHA02844 putative transmembrane protein; Provisional Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PHA03054 IMV membrane protein; Provisional Back     alignment and domain information
>PHA02650 hypothetical protein; Provisional Back     alignment and domain information
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function Back     alignment and domain information
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G Back     alignment and domain information
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2 Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PHA02692 hypothetical protein; Provisional Back     alignment and domain information
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function Back     alignment and domain information
>PHA02975 hypothetical protein; Provisional Back     alignment and domain information
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [] Back     alignment and domain information
>PRK14762 membrane protein; Provisional Back     alignment and domain information
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins Back     alignment and domain information
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea Back     alignment and domain information
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 6e-18
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 2e-16
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 3e-12
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 2e-09
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 1e-08
3b5n_D64 Protein transport protein SEC9; snare complex, syn 2e-06
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 87 Back     alignment and structure
 Score = 75.7 bits (186), Expect = 6e-18
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 157 QQTEESSQFRQEY--EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTK 214
           +Q   S  F +    + R+ + D+ L+ +S  +  L++MA DM  E+D Q   +D I  K
Sbjct: 6   EQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEK 65

Query: 215 VDRATADLKNTNVRLKH 231
            D     +   N R   
Sbjct: 66  ADSNKTRIDEANQRATK 82
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Length = 66 Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Length = 82 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 87 Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Length = 64 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 99.74
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 99.64
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 99.56
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 99.55
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 99.5
3b5n_D64 Protein transport protein SEC9; snare complex, syn 99.44
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 99.36
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.32
2c5k_T95 Syntaxin TLG1, T-snare affecting A late golgi comp 99.22
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 98.66
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 98.56
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 98.21
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 98.17
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 98.08
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 98.04
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 98.02
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 97.57
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 96.97
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 96.45
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 95.78
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 94.23
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 93.99
3b5n_C70 Protein transport protein SEC9; snare complex, syn 93.25
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 92.0
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 91.23
2nps_C81 Vesicle transport through interaction with T- snar 90.48
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 89.65
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 80.3
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
Probab=99.74  E-value=7.8e-18  Score=123.08  Aligned_cols=75  Identities=17%  Similarity=0.289  Sum_probs=60.9

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024570          165 FRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSS  239 (265)
Q Consensus       165 ~~q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~  239 (265)
                      .+|.|+.++++||+.||.|+.+|++||++|.+||+||+.||++||+|+++||++..+|..+++|+++++++.++.
T Consensus         6 ~~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~   80 (82)
T 2nps_D            6 SMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDR   80 (82)
T ss_dssp             ------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence            467888999999999999999999999999999999999999999999999999999999999999999986654
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
d1lvfa_106 Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu 99.33
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 6, SNAP-25 homolog
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=4.1e-12  Score=95.16  Aligned_cols=93  Identities=15%  Similarity=0.176  Sum_probs=75.3

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh------hhhhcHHHHHHHHHHHHHHHHHHHHHH--hh---ccCCCHH
Q 024570           33 DDAFARLYGAVEADIEAALQKAESASNEKNRAS------VVALNAEIRRTKARLLEEVPKLQRLAI--KK---VKGLSTE  101 (265)
Q Consensus        33 ~DpF~~v~~~~~~~l~~l~~~~~~~~~ernr~~------~~~~~~eir~~l~~l~~~l~~L~~~~~--~k---~~~lt~~  101 (265)
                      +|||+.+.++|...+..+..++..+...++.+.      ......||+..|+.++|+|.+|++++.  .+   .|+|++.
T Consensus         1 eDPF~~v~~EVq~s~~~~~~l~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l~~~   80 (106)
T d1lvfa_           1 EDPFFVVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDAT   80 (106)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTCCHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCCCHH
Confidence            599999999999999999988665554443211      112236999999999999999999953  12   4799999


Q ss_pred             HHHHHHHHHHHHHHHHHccccccc
Q 024570          102 ELVARNDLVLALPDRIQAIPDGTA  125 (265)
Q Consensus       102 El~~R~~~v~~l~~~l~~l~~~~~  125 (265)
                      |+.+|++||..++.+|.+|++.++
T Consensus        81 ei~~Rr~fi~~~~~~I~~~~~~l~  104 (106)
T d1lvfa_          81 ELSIRKAFITSTRQIVRDMKDQMS  104 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988765