Citrus Sinensis ID: 024577

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MLTRRLIRFLLPATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPMFLLHITALNHCMFSFASRFLKLIIDCG
cHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEcccccEEcccccccEEEcccccccccccHHHHHHHcccHHHHHHHccccccccccccccccEEEccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcc
cHHHHHHHHHccccccccccccccccccEEEEccccHHHEcccccccccccccEEEEHHHHHHccccccccccEEEcccccEEEEEEccEEEEEEccccHHEEEcccHHHccccccccHHHHcccHHHHHHHHHHHHHccccccccccEEEEcccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHcc
MLTRRLIRFllpatqlpqatnsstfpksrtsvsdnslatrakaktisvgdrgvGVTAVSVTMsfssdqrsedghfklsESAALVINkgditkwsvdgssdaivnpanermlggggadgaihraagpelreacckvpevrpevrcpigearitpgfklpashvihtvgpiydadsnpeasLRNAYKNSLSVAKENNIQYIAFTAIscgvygypyEEAAAVALSTVKEFANDFKEVSLPMFLLHITALNHCMFSFASRFLKLIIDCG
MLTRRLIRFllpatqlpqatnsstfpksrtsvsdnslatrakaktisvgdrgvgVTAVSVTMSfssdqrsedghFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARitpgfklpaSHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPMFLLHITALNHCMFSFASRFLKLIIDCG
MLTRRLIRFLLPATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPMFLLHITALNHCMFSFASRFLKLIIDCG
*****LIRFLL****************************************GVGVTAVS*********************AALVINKGDITKWSVDGS*DAIV*************DGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDA**********AYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPMFLLHITALNHCMFSFASRFLKLIIDC*
***RRLIRFLLPATQLPQA*N*STFPKSRTSVSD***********ISV*DRGVGVTAVS*******************ESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPMFLLHITALNHCMFSFASRFLKLIIDC*
MLTRRLIRFLLPATQLPQA*******************TRAKAKTISVGDRGVGVTAVSVTMSF*********HFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPMFLLHITALNHCMFSFASRFLKLIIDCG
MLTRRLIRFLLPATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFS******DGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPMFLLHITALNHCMFSFASRFLKLIIDCG
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SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLTRRLIRFLLPATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPMFLLHITALNHCMFSFASRFLKLIIDCG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query265 2.2.26 [Sep-21-2011]
Q8P5Z8179 Macro domain-containing p yes no 0.543 0.804 0.530 7e-39
Q8PHB6179 Macro domain-containing p yes no 0.543 0.804 0.523 1e-38
Q87JZ5170 Macro domain-containing p yes no 0.524 0.817 0.548 7e-35
Q8KAE4172 Macro domain-containing p yes no 0.539 0.831 0.506 2e-34
Q8Y2K1171 Macro domain-containing p yes no 0.569 0.883 0.491 4e-34
Q88SK6172 Macro domain-containing p yes no 0.498 0.767 0.531 2e-33
Q9HXU7173 Macro domain-containing p yes no 0.547 0.838 0.490 3e-33
B7LT90177 O-acetyl-ADP-ribose deace yes no 0.509 0.762 0.535 1e-32
D3RKJ0175 O-acetyl-ADP-ribose deace yes no 0.554 0.84 0.525 1e-32
B5XXK9175 O-acetyl-ADP-ribose deace yes no 0.554 0.84 0.525 1e-32
>sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=XCC3184 PE=4 SV=1 Back     alignment and function desciption
 Score =  160 bits (406), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/149 (53%), Positives = 99/149 (66%), Gaps = 5/149 (3%)

Query: 85  INKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRC 144
           + +GDIT+  VD     IVN ANE +LGGGG DGAIHRAAGP L EAC  +PEVRP VRC
Sbjct: 5   VWQGDITQLDVD----VIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPEVRPGVRC 60

Query: 145 PIGEARITPGFKLPASHVIHTVGPIY-DADSNPEASLRNAYKNSLSVAKENNIQYIAFTA 203
           P GE RIT GF L A H+ HTVGP++ D   N    L N Y  SL +A++  +  IAF A
Sbjct: 61  PTGEIRITDGFDLKARHIFHTVGPVWRDGKHNEPEQLANCYWQSLKLAEQMMLHSIAFPA 120

Query: 204 ISCGVYGYPYEEAAAVALSTVKEFANDFK 232
           ISCG+YGYP  +AA +A++  +++    K
Sbjct: 121 ISCGIYGYPLYQAARIAVTETRDWQRSHK 149

Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) (taxid: 190485)
>sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=Xanthomonas axonopodis pv. citri (strain 306) GN=XAC3343 PE=4 SV=2 Back     alignment and function description
>sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VPA0103 PE=4 SV=1 Back     alignment and function description
>sp|Q8KAE4|Y2219_CHLTE Macro domain-containing protein CT2219 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=CT2219 PE=4 SV=1 Back     alignment and function description
>sp|Q8Y2K1|Y334_RALSO Macro domain-containing protein RSc0334 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc0334 PE=4 SV=1 Back     alignment and function description
>sp|Q88SK6|Y3408_LACPL Macro domain-containing protein lp_3408 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=lp_3408 PE=4 SV=1 Back     alignment and function description
>sp|Q9HXU7|Y3693_PSEAE Macro domain-containing protein PA3693 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3693 PE=4 SV=1 Back     alignment and function description
>sp|B7LT90|YMDB_ESCF3 O-acetyl-ADP-ribose deacetylase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ymdB PE=3 SV=2 Back     alignment and function description
>sp|D3RKJ0|YMDB_KLEVT O-acetyl-ADP-ribose deacetylase OS=Klebsiella variicola (strain At-22) GN=ymdB PE=3 SV=1 Back     alignment and function description
>sp|B5XXK9|YMDB_KLEP3 O-acetyl-ADP-ribose deacetylase OS=Klebsiella pneumoniae (strain 342) GN=ymdB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
357436403233 Appr-1-p processing enzyme family protei 0.758 0.862 0.699 1e-75
356552646236 PREDICTED: macro domain-containing prote 0.626 0.703 0.789 8e-73
255636888201 unknown [Glycine max] 0.622 0.820 0.793 1e-72
297827693256 hypothetical protein ARALYDRAFT_483117 [ 0.645 0.667 0.748 4e-72
255559685269 Protein LRP16, putative [Ricinus communi 0.622 0.613 0.781 5e-72
23397339239 unknown protein [Arabidopsis thaliana] 0.637 0.707 0.757 6e-72
30688336257 appr-1-p processing enzyme family protei 0.637 0.657 0.757 8e-72
225448685231 PREDICTED: macro domain-containing prote 0.626 0.718 0.777 3e-71
20196872193 expressed protein [Arabidopsis thaliana] 0.637 0.875 0.757 3e-71
297736490190 unnamed protein product [Vitis vinifera] 0.626 0.873 0.777 4e-71
>gi|357436403|ref|XP_003588477.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|355477525|gb|AES58728.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|388499270|gb|AFK37701.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/203 (69%), Positives = 162/203 (79%), Gaps = 2/203 (0%)

Query: 47  SVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAALVINKGDITKWSVDGSSDAIVNPA 106
           +V  R   ++A++ +   SS+       F LS S AL+I KGDITKWS+DGS+DAIVNPA
Sbjct: 23  AVNLRSFRLSAMNTSAMASSNGNGGVVRFPLSSSNALIIQKGDITKWSIDGSTDAIVNPA 82

Query: 107 NERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTV 166
           NERMLGGGGADGAIHRAAGP+L  AC  VPEVRP VRCP GEARITPGF LPASHVIHTV
Sbjct: 83  NERMLGGGGADGAIHRAAGPDLLRACRNVPEVRPGVRCPTGEARITPGFLLPASHVIHTV 142

Query: 167 GPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKE 226
           GPIYD DSNP ASL +AY+NSL VAKENNIQYIAF AISCGVYGYPY+EAA VA+ST+KE
Sbjct: 143 GPIYDVDSNPAASLASAYRNSLRVAKENNIQYIAFPAISCGVYGYPYDEAATVAISTIKE 202

Query: 227 FANDFKEVSLPMFL--LHITALN 247
           F NDFKEV   +F+  ++ T LN
Sbjct: 203 FQNDFKEVHFVLFMSDIYDTWLN 225

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356552646|ref|XP_003544674.1| PREDICTED: macro domain-containing protein XCC3184-like [Glycine max] Back     alignment and taxonomy information
>gi|255636888|gb|ACU18777.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|297827693|ref|XP_002881729.1| hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata] gi|297327568|gb|EFH57988.1| hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255559685|ref|XP_002520862.1| Protein LRP16, putative [Ricinus communis] gi|223539993|gb|EEF41571.1| Protein LRP16, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|23397339|gb|AAK93649.2| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30688336|ref|NP_030605.2| appr-1-p processing enzyme family protein [Arabidopsis thaliana] gi|24030242|gb|AAN41297.1| unknown protein [Arabidopsis thaliana] gi|330254759|gb|AEC09853.1| appr-1-p processing enzyme family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225448685|ref|XP_002280352.1| PREDICTED: macro domain-containing protein VPA0103 [Vitis vinifera] gi|147769460|emb|CAN70345.1| hypothetical protein VITISV_012577 [Vitis vinifera] Back     alignment and taxonomy information
>gi|20196872|gb|AAB87596.2| expressed protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297736490|emb|CBI25361.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
TAIR|locus:2061923257 AT2G40600 "AT2G40600" [Arabido 0.8 0.824 0.65 6.3e-69
UNIPROTKB|Q3AEI4181 CHY_0594 "Putative uncharacter 0.588 0.861 0.484 9.8e-32
TIGR_CMR|CHY_0594181 CHY_0594 "conserved hypothetic 0.588 0.861 0.484 9.8e-32
UNIPROTKB|E2RAG4324 MACROD1 "Uncharacterized prote 0.615 0.503 0.435 2.3e-31
UNIPROTKB|A1Z1Q3 448 MACROD2 "O-acetyl-ADP-ribose d 0.630 0.372 0.45 2.6e-31
UNIPROTKB|Q9BQ69325 MACROD1 "O-acetyl-ADP-ribose d 0.550 0.449 0.462 3e-31
UNIPROTKB|Q74FT0173 ymdB "O-acetyl-ADP-ribose deac 0.535 0.820 0.490 4.2e-31
TIGR_CMR|GSU_0526173 GSU_0526 "conserved hypothetic 0.535 0.820 0.490 4.2e-31
MGI|MGI:1920149 475 Macrod2 "MACRO domain containi 0.630 0.351 0.444 6.9e-31
RGD|1591318 531 Macrod2 "MACRO domain containi 0.584 0.291 0.470 2.4e-30
TAIR|locus:2061923 AT2G40600 "AT2G40600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 143/220 (65%), Positives = 171/220 (77%)

Query:    20 TNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSE 79
             T+SS+   S  S + N+  T A + + ++  R   +T VS +M+ S D   E   F LS+
Sbjct:    27 TSSSSSRASLISFAVNNFHTIASSSS-TLSSR---LTTVSSSMA-SGD---EGAVFNLSD 78

Query:    80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVR 139
             S+ L I KGDITKWSVD SSDAIVNPANERMLGGGGADGAIHRAAGP+LR AC +VPEVR
Sbjct:    79 SSLLKILKGDITKWSVDSSSDAIVNPANERMLGGGGADGAIHRAAGPQLRAACYEVPEVR 138

Query:   140 PEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYI 199
             P VRCP GEARITPGF LPAS VIHTVGPIYD+D NP+ SL N+YKNSL VAKENNI+YI
Sbjct:   139 PGVRCPTGEARITPGFNLPASRVIHTVGPIYDSDVNPQESLTNSYKNSLRVAKENNIKYI 198

Query:   200 AFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPMF 239
             AF AISCG+YGYP++EAAA+ +ST+K+F+ DFKEV   +F
Sbjct:   199 AFPAISCGIYGYPFDEAAAIGISTIKQFSTDFKEVHFVLF 238
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|Q3AEI4 CHY_0594 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0594 CHY_0594 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAG4 MACROD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A1Z1Q3 MACROD2 "O-acetyl-ADP-ribose deacetylase MACROD2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BQ69 MACROD1 "O-acetyl-ADP-ribose deacetylase MACROD1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q74FT0 ymdB "O-acetyl-ADP-ribose deacetylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0526 GSU_0526 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
MGI|MGI:1920149 Macrod2 "MACRO domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1591318 Macrod2 "MACRO domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
cd02908165 cd02908, Macro_Appr_pase_like, Macro domain, Appr- 2e-74
PRK00431177 PRK00431, PRK00431, RNase III inhibitor; Provision 4e-65
pfam01661117 pfam01661, Macro, Macro domain 8e-50
COG2110179 COG2110, COG2110, Predicted phosphatase homologous 7e-48
PRK04143264 PRK04143, PRK04143, hypothetical protein; Provisio 8e-44
cd02907175 cd02907, Macro_Af1521_BAL_like, Macro domain, Af15 9e-42
smart00506133 smart00506, A1pp, Appr-1"-p processing enzyme 4e-39
cd02906147 cd02906, Macro_1, Macro domain, Unknown family 1 3e-37
cd02749147 cd02749, Macro, Macro domain, a high-affinity ADP- 3e-34
cd02905140 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_lik 2e-32
cd03330133 cd03330, Macro_2, Macro domain, Unknown family 2 2e-27
cd02903137 cd02903, Macro_BAL_like, Macro domain, BAL_like fa 4e-17
cd02904186 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_l 3e-12
>gnl|CDD|239236 cd02908, Macro_Appr_pase_like, Macro domain, Appr-1"-pase_like family Back     alignment and domain information 
 Score =  223 bits (571), Expect = 2e-74
 Identities = 81/142 (57%), Positives = 99/142 (69%), Gaps = 11/142 (7%)

Query: 87  KGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPI 146
           +GDITK  VD    AIVN AN  +LGGGG DGAIHRAAGPEL E C ++        CP 
Sbjct: 6   QGDITKLEVD----AIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELRG------CPT 55

Query: 147 GEARITPGFKLPASHVIHTVGPIYDADSNPEAS-LRNAYKNSLSVAKENNIQYIAFTAIS 205
           GEA IT G+ LPA +VIHTVGP++    + EA  L + Y+NSL +A+EN ++ IAF AIS
Sbjct: 56  GEAVITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAFPAIS 115

Query: 206 CGVYGYPYEEAAAVALSTVKEF 227
            GVYGYP +EAA +AL TV+EF
Sbjct: 116 TGVYGYPLDEAARIALKTVREF 137

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate. Length = 165
>gnl|CDD|234759 PRK00431, PRK00431, RNase III inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|216634 pfam01661, Macro, Macro domain Back     alignment and domain information
>gnl|CDD|225021 COG2110, COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>gnl|CDD|235225 PRK04143, PRK04143, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|239235 cd02907, Macro_Af1521_BAL_like, Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>gnl|CDD|214701 smart00506, A1pp, Appr-1"-p processing enzyme Back     alignment and domain information
>gnl|CDD|239234 cd02906, Macro_1, Macro domain, Unknown family 1 Back     alignment and domain information
>gnl|CDD|239150 cd02749, Macro, Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>gnl|CDD|239233 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_like family Back     alignment and domain information
>gnl|CDD|239446 cd03330, Macro_2, Macro domain, Unknown family 2 Back     alignment and domain information
>gnl|CDD|239231 cd02903, Macro_BAL_like, Macro domain, BAL_like family Back     alignment and domain information
>gnl|CDD|239232 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
PRK04143264 hypothetical protein; Provisional 100.0
cd02904186 Macro_H2A_like Macro domain, Macro_H2A_like family 100.0
cd02907175 Macro_Af1521_BAL_like Macro domain, Af1521- and BA 100.0
cd02908165 Macro_Appr_pase_like Macro domain, Appr-1"-pase_li 100.0
cd02905140 Macro_GDAP2_like Macro domain, GDAP2_like family. 100.0
PRK00431177 RNase III inhibitor; Provisional 100.0
COG2110179 Predicted phosphatase homologous to the C-terminal 100.0
cd02906147 Macro_1 Macro domain, Unknown family 1. The macro 100.0
cd02903137 Macro_BAL_like Macro domain, BAL_like family. The 100.0
cd03330133 Macro_2 Macro domain, Unknown family 2. The macro 100.0
cd02900186 Macro_Appr_pase Macro domain, Appr-1"-pase family. 99.98
KOG2633200 consensus Hismacro and SEC14 domain-containing pro 99.97
smart00506133 A1pp Appr-1"-p processing enzyme. Function determi 99.97
cd02749147 Macro Macro domain, a high-affinity ADP-ribose bin 99.96
PF01661118 Macro: Macro domain; InterPro: IPR002589 The Macro 99.95
PRK13341725 recombination factor protein RarA/unknown domain f 99.94
cd02901140 Macro_Poa1p_like Macro domain, Poa1p_like family. 99.9
PHA02595154 tk.4 hypothetical protein; Provisional 99.73
PF14519280 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJ 99.27
cd03331152 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like fam 98.75
TIGR02452266 conserved hypothetical protein TIGR02452. Members 97.74
PF10154510 DUF2362: Uncharacterized conserved protein (DUF236 95.91
COG4295285 Uncharacterized protein conserved in bacteria [Fun 95.64
PHA00684128 hypothetical protein 84.3
>PRK04143 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.7e-51  Score=367.38  Aligned_cols=217  Identities=31%  Similarity=0.462  Sum_probs=195.2

Q ss_pred             hHHHHHhhcCCCCCCccccCCCCCccceecchhhHHHHhhhcccccCCCCccccccccccccccCCCCCCcceecCCCce
Q 024577            3 TRRLIRFLLPATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAA   82 (265)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~f~~~~~~~   82 (265)
                      +|+|+|-|| +++.|....+|     ++..||+||+.+..++++         |+..+..             ++ .+.+
T Consensus        34 ~~~~~r~l~-n~r~p~~~~~~-----~l~~~~~~l~~~~~~~~~---------~~~~~~~-------------~~-~~~~   84 (264)
T PRK04143         34 QQDLLRALA-NVRPALPLSDE-----YLNLQDAYLQDENAERGV---------VDLKDLQ-------------PI-KYDN   84 (264)
T ss_pred             HHHHHHHHh-ccCCCCCCCHH-----HHHHHHHHHHHHHhhcCc---------ccHHhcC-------------cc-CCCE
Confidence            689999999 99999777666     899999999999999888         8777763             22 3689


Q ss_pred             EEEEECccceeccCCCCcEEEEcCCCCCCCC-----CChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCC
Q 024577           83 LVINKGDITKWSVDGSSDAIVNPANERMLGG-----GGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKL  157 (265)
Q Consensus        83 I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~-----~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L  157 (265)
                      |.||+||||++++    ||||||||+.|.++     +||+++|+++||++|+++|+++++. +++.+++|++++|++|+|
T Consensus        85 i~i~~GDIt~l~v----DAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~-~g~~~~~G~a~iT~~~nL  159 (264)
T PRK04143         85 IFLWQGDITRLKV----DAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTE-QGRKEATGQAKITRAYNL  159 (264)
T ss_pred             EEEEECCcceeec----CEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHH-cCCCCCCceEEEecCCCC
Confidence            9999999999987    99999999999865     8999999999999999999998753 355789999999999999


Q ss_pred             CCceEEEEcCcccCCCC---ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcC---C
Q 024577          158 PASHVIHTVGPIYDADS---NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAND---F  231 (265)
Q Consensus       158 ~~k~IIH~V~P~~~~~~---~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~---l  231 (265)
                      |||||||+|||.|+.+.   ...+.|++||++||++|.+++++|||||+||||+||||+++||++|++++++|++.   .
T Consensus       160 p~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~  239 (264)
T PRK04143        160 PAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSK  239 (264)
T ss_pred             CCCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999998732   45789999999999999999999999999999999999999999999999999963   3


Q ss_pred             CeEEEEeeCcchHHHHHHHHHH
Q 024577          232 KEVSLPMFLLHITALNHCMFSF  253 (265)
Q Consensus       232 ~~V~~v~~~~~~~~~~~~~f~~  253 (265)
                      .+|+|++|+++.+.+|+..++.
T Consensus       240 ~~Vif~vf~~~d~~iy~~~l~~  261 (264)
T PRK04143        240 LKVVFNVFTDEDLELYQKALNK  261 (264)
T ss_pred             CEEEEEEcCHHHHHHHHHHHHH
Confidence            5899999999999999998764

>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family Back     alignment and domain information
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family Back     alignment and domain information
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family Back     alignment and domain information
>PRK00431 RNase III inhibitor; Provisional Back     alignment and domain information
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>cd02906 Macro_1 Macro domain, Unknown family 1 Back     alignment and domain information
>cd02903 Macro_BAL_like Macro domain, BAL_like family Back     alignment and domain information
>cd03330 Macro_2 Macro domain, Unknown family 2 Back     alignment and domain information
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family Back     alignment and domain information
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00506 A1pp Appr-1"-p processing enzyme Back     alignment and domain information
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family Back     alignment and domain information
>PHA02595 tk Back     alignment and domain information
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A Back     alignment and domain information
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily Back     alignment and domain information
>TIGR02452 conserved hypothetical protein TIGR02452 Back     alignment and domain information
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans Back     alignment and domain information
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PHA00684 hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
1spv_A184 Crystal Structure Of The Putative Phosphatase Of Es 6e-31
2x47_A235 Crystal Structure Of Human Macrod1 Length = 235 3e-30
3q6z_A214 Human Parp14 (Artd8)-Macro Domain 1 In Complex With 3e-18
2dx6_A159 Crystal Structure Of Conserved Hypothetical Protein 2e-15
4etj_A167 Crystal Structure Of E6h Variant Of De Novo Designe 2e-14
4ess_A167 Crystal Structure Of E6dL155R VARIANT OF DE NOVO DE 2e-14
3v45_A167 Crystal Structure Of De Novo Designed Serine Hydrol 2e-14
4gvv_A167 Crystal Structure Of De Novo Design Serine Hydrolas 9e-14
4etk_A167 Crystal Structure Of E6aL130DA155H VARIANT OF DE NO 2e-13
1zr3_A211 Crystal Structure Of The Macro-Domain Of Human Core 2e-11
1vhu_A211 Crystal Structure Of A Putative Phosphoesterase Len 4e-11
1hjz_A192 Crystal Structure Of Af1521 Protein Containing A Ma 5e-11
2bfr_A192 The Macro Domain Is An Adp-Ribose Binding Module Le 5e-11
1yd9_A193 1.6a Crystal Structure Of The Non-Histone Domain Of 6e-11
4gvw_A199 Three-Dimensional Structure Of The De Novo Designed 4e-10
1zr5_A214 Crystal Structure Of The Macro-Domain Of Human Core 5e-09
3gqe_A168 Crystal Structure Of Macro Domain Of Venezuelan Equ 2e-06
3q71_A221 Human Parp14 (Artd8) - Macro Domain 2 In Complex Wi 2e-06
3ewo_A177 Ibv Nsp3 Adrp Domain Length = 177 2e-04
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of Escherichia Coli, Northeast Structural Genomoics Target Er58 Length = 184 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (328), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 92/144 (63%), Gaps = 7/144 (4%)
Query: 85  INKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRC 144
           + +GDITK +VD     IVN AN  + GGGG DGAIHRAAGP L +AC KV + + +  C
Sbjct: 7   VVQGDITKLAVD----VIVNAANPSLXGGGGVDGAIHRAAGPALLDACLKVRQQQGD--C 60
Query: 145 PIGEARITPGFKLPASHVIHTVGPIY-DADSNPEASLRNAYKNSLSVAKENNIQYIAFTA 203
           P G A IT    LPA  V+HTVGP++   + N +  L++AY NSL +   N+   +AF A
Sbjct: 61  PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPA 120
Query: 204 ISCGVYGYPYEEAAAVALSTVKEF 227
           IS GVYGYP   AA +A+ TV EF
Sbjct: 121 ISTGVYGYPRAAAAEIAVKTVSEF 144
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1 Length = 235 Back     alignment and structure
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With Adenosine-5- Diphosphoribose Length = 214 Back     alignment and structure
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein, Ttha0132 From Thermus Thermophilus Hb8 Length = 159 Back     alignment and structure
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or185 Length = 167 Back     alignment and structure
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED SERINE Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or187 Length = 167 Back     alignment and structure
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium Target Or130 Length = 167 Back     alignment and structure
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase Osh55.27, Northeast Structural Genomics Consortium (Nesg) Target Or246 Length = 167 Back     alignment and structure
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO DESIGNED Serine Hydrolase, Northeast Structural Genomics Consortium (Nesg) Target Or186 Length = 167 Back     alignment and structure
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.1 (Form B) Length = 211 Back     alignment and structure
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase Length = 211 Back     alignment and structure
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a Domain Length = 192 Back     alignment and structure
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module Length = 192 Back     alignment and structure
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The Histone Variant Macroh2a1.1. Length = 193 Back     alignment and structure
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine Hydrolase 2bfq_3, Northeast Structural Genomics Consortium (Nesg) Target Or248 Length = 199 Back     alignment and structure
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.2 Length = 214 Back     alignment and structure
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine Encephalitis Virus Length = 168 Back     alignment and structure
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With Adenosine-5- Diphosphoribose Length = 221 Back     alignment and structure
>pdb|3EWO|A Chain A, Ibv Nsp3 Adrp Domain Length = 177 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
1spv_A184 Putative polyprotein/phosphatase; structural genom 2e-77
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 3e-77
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 1e-74
2x47_A235 Macro domain-containing protein 1; signaling prote 5e-74
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 7e-74
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 9e-73
1vhu_A211 Hypothetical protein AF1521; structural genomics, 7e-72
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 9e-72
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 1e-66
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 2e-65
3gqe_A168 Non-structural protein 3; macro domain, X domain, 1e-64
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 2e-63
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 8e-63
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 1e-60
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 2e-60
2vri_A174 Non-structural protein 3; RNA replication, nucleot 7e-59
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 4e-40
2jyc_A160 Uncharacterized protein C6ORF130; macro domain, A1 2e-15
2eee_A149 Uncharacterized protein C6ORF130; macro domain, A1 2e-14
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Length = 184 Back     alignment and structure
 Score =  231 bits (591), Expect = 2e-77
 Identities = 72/153 (47%), Positives = 91/153 (59%), Gaps = 7/153 (4%)

Query: 83  LVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEV 142
           + + +GDITK +VD     IVN AN  ++GGGG DGAIHRAAGP L +AC KV + +   
Sbjct: 5   IHVVQGDITKLAVD----VIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQG-- 58

Query: 143 RCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS-LRNAYKNSLSVAKENNIQYIAF 201
            CP G A IT    LPA  V+HTVGP++      E   L++AY NSL +   N+   +AF
Sbjct: 59  DCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAF 118

Query: 202 TAISCGVYGYPYEEAAAVALSTVKEFANDFKEV 234
            AIS GVYGYP   AA +A+ TV EF       
Sbjct: 119 PAISTGVYGYPRAAAAEIAVKTVSEFITRHALP 151
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Length = 214 Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Length = 193 Back     alignment and structure
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Length = 235 Back     alignment and structure
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Length = 193 Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Length = 159 Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Length = 211 Back     alignment and structure
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Length = 221 Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Length = 182 Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Length = 168 Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Length = 168 Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Length = 176 Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Length = 168 Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Length = 193 Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Length = 174 Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Length = 284 Back     alignment and structure
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Length = 149 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 100.0
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 100.0
1spv_A184 Putative polyprotein/phosphatase; structural genom 100.0
4abl_A183 Poly [ADP-ribose] polymerase 14; transferase, PARP 100.0
2x47_A235 Macro domain-containing protein 1; signaling prote 100.0
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 100.0
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 100.0
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 100.0
1vhu_A211 Hypothetical protein AF1521; structural genomics, 100.0
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 100.0
3gqe_A168 Non-structural protein 3; macro domain, X domain, 100.0
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 100.0
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 100.0
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 100.0
2vri_A174 Non-structural protein 3; RNA replication, nucleot 100.0
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 100.0
4gua_A 670 Non-structural polyprotein; viral precursor polypr 100.0
2jyc_A160 Uncharacterized protein C6ORF130; macro domain, A1 99.96
2eee_A149 Uncharacterized protein C6ORF130; macro domain, A1 99.96
2fg1_A158 Conserved hypothetical protein BT1257; structural 99.94
3sig_A277 PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1 99.05
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.8e-46  Score=327.47  Aligned_cols=177  Identities=32%  Similarity=0.428  Sum_probs=161.8

Q ss_pred             CcceecCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEE
Q 024577           72 DGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARI  151 (265)
Q Consensus        72 ~~~f~~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vvi  151 (265)
                      ...+.+.++.+|.|++||||++++    |||||+||+.|.+++||++||+++||++|++||+++++.  .+++++|++++
T Consensus        28 ~~~~~~~~g~~I~v~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~i  101 (214)
T 3q6z_A           28 FSRTVLAPGVVLIVQQGDLARLPV----DVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKR--EGRLLPGNATI  101 (214)
T ss_dssp             CEEEEEETTEEEEEEECCTTSCSS----SEEEEEECTTCCCCSHHHHHHHHHHCTHHHHHHHHHHHH--HCCCCTTCEEE
T ss_pred             EEEEEcCCCcEEEEEecccccCcC----CEEEeCCCCCCCCCchHHHHHHHhhhHHHHHHHHHHHHH--cCCCCCCeEEE
Confidence            345567778999999999999987    999999999999999999999999999999999988632  34799999999


Q ss_pred             cCCCCCCCceEEEEcCcccCCCCC--hHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc
Q 024577          152 TPGFKLPASHVIHTVGPIYDADSN--PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN  229 (265)
Q Consensus       152 T~a~~L~~k~IIH~V~P~~~~~~~--~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~  229 (265)
                      |++|+||||||||+|||.|+.+..  ..+.|++||++||++|++++++|||||+||||++|||++++|++|++++++|++
T Consensus       102 T~~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~  181 (214)
T 3q6z_A          102 SKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQ  181 (214)
T ss_dssp             EECTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             EcCCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987642  357899999999999999999999999999999999999999999999999984


Q ss_pred             ------CCCeEEEEeeCcchHHHHHHHHHHH
Q 024577          230 ------DFKEVSLPMFLLHITALNHCMFSFA  254 (265)
Q Consensus       230 ------~l~~V~~v~~~~~~~~~~~~~f~~~  254 (265)
                            .+++|+||+|+++.+++|+..++..
T Consensus       182 ~~~~~~~l~~V~fv~~d~~~~~~f~~~l~~~  212 (214)
T 3q6z_A          182 FKKDGHCLKEIYLVDVSEKTVEAFAEAVKTV  212 (214)
T ss_dssp             SCC--CCCCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             hcCCCCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence                  4689999999999999999988754
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Back     alignment and structure
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Back     alignment and structure
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Back     alignment and structure
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A Back     alignment and structure
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Back     alignment and structure
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} Back     alignment and structure
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Back     alignment and structure
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A Back     alignment and structure
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 265
d1yd9a1188 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Ratt 1e-42
d1vhua_192 c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeo 1e-41
d1spva_172 c.50.1.2 (A:) Hypothetical protein YmbD {Escherich 7e-41
d2acfa1168 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SA 9e-40
d1njra_264 c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker' 1e-39
d2fg1a1154 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Ba 1e-26
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 188 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  141 bits (357), Expect = 1e-42
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 7/154 (4%)

Query: 83  LVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEV 142
           L + + DI     D    A+V+P N     GG     + +  G E  EA  ++   +   
Sbjct: 16  LQVVQADIASIDSD----AVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLEL--RKKNG 69

Query: 143 RCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFT 202
              +  A ++ G  LPA  VIH   P++ +D   E  L    KN L++A +  ++ IAF 
Sbjct: 70  PLEVAGAAVSAGHGLPAKFVIHCNSPVWGSDKCEEL-LEKTVKNCLALADDRKLKSIAFP 128

Query: 203 AISCGVYGYPYEEAAAVALSTVKEFANDFKEVSL 236
           +I  G  G+P + AA + L  +  +       S+
Sbjct: 129 SIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSI 162
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192 Back     information, alignment and structure
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Length = 172 Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Length = 168 Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 264 Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 154 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
d1yd9a1188 Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax 100.0
d1spva_172 Hypothetical protein YmbD {Escherichia coli [TaxId 100.0
d1vhua_192 Hypothetical protein AF1521 {Archaeon Archaeoglobu 100.0
d2acfa1168 Replicase polyprotein 1ab {SARS coronavirus [TaxId 100.0
d1njra_264 Hypothetical protein Ymr087W {Baker's yeast (Sacch 99.97
d2fg1a1154 Hypothetical protein BT1257 {Bacteroides thetaiota 99.89
d1gyta1178 Leucine aminopeptidase (Aminopeptidase A), N-termi 90.46
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.6e-43  Score=299.58  Aligned_cols=170  Identities=25%  Similarity=0.405  Sum_probs=156.7

Q ss_pred             CCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCC
Q 024577           78 SESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKL  157 (265)
Q Consensus        78 ~~~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L  157 (265)
                      -.+.+|+|++|||+++++    |||||++|+++.+++|++++|++++|++|++||+++.+  ..+++++|++++|++|+|
T Consensus        11 ~~~~~i~i~~GDIt~~~~----DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~--~~~~~~~g~~~vT~~~~L   84 (188)
T d1yd9a1          11 FLGQKLQVVQADIASIDS----DAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLELRK--KNGPLEVAGAAVSAGHGL   84 (188)
T ss_dssp             TTSCEEEEECSCGGGCCC----SEEEEECCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHH--HHCSCCTTCEEEEECTTS
T ss_pred             ccCCEEEEEeCCcCcCCC----CEEEECCCccCCCCchHHHHHHHHHHHHHHHHHHHHHH--hccccCCCCeeecccCCC
Confidence            347899999999999976    99999999999999999999999999999999998753  234789999999999999


Q ss_pred             CCceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc-----CCC
Q 024577          158 PASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN-----DFK  232 (265)
Q Consensus       158 ~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~-----~l~  232 (265)
                      ||+||||+|+|.|+.+ ...+.|++||++||+.|++++++|||||+||||.+|||++++|++|++++++|+.     +++
T Consensus        85 ~~k~IiH~v~P~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIafP~igtG~~g~p~~~~a~~~~~ai~~fl~~~~~~~l~  163 (188)
T d1yd9a1          85 PAKFVIHCNSPVWGSD-KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIK  163 (188)
T ss_dssp             SSSEEEEECCCCTTST-THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCTTCCCC
T ss_pred             CceEEeeeccccCCCc-chHHHHHHHHHHHHHHHHHcCCCeEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            9999999999999875 4678999999999999999999999999999999999999999999999999974     478


Q ss_pred             eEEEEeeCcchHHHHHHHHHHH
Q 024577          233 EVSLPMFLLHITALNHCMFSFA  254 (265)
Q Consensus       233 ~V~~v~~~~~~~~~~~~~f~~~  254 (265)
                      +|+||+|+++.+.+|++.+...
T Consensus       164 ~V~~v~~~~~~~~~f~~~l~ki  185 (188)
T d1yd9a1         164 TVYFVLFDSESIGIYVQEMAKL  185 (188)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTT
T ss_pred             EEEEEeCCHHHHHHHHHHHHHH
Confidence            9999999999999999888543
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1gyta1 c.50.1.1 (A:1-178) Leucine aminopeptidase (Aminopeptidase A), N-terminal domain {Escherichia coli, PepA [TaxId: 562]} Back     information, alignment and structure