Citrus Sinensis ID: 024590

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MAIADWHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTGPRVVGEGLVIDEWKERREKYLARQQVEAVDSV
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEccccccEEEEEEEEEcccccEEEEEEcccccccEEEcccccEEccccEEEEEEEEEEcccccccccccccccccEEEEEEEEEcccccccHHHHHccccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccEEEEcccHHcccccccccEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEccccEEEEEEEEEEEccHHccccccccccccEEEEEEEEEcccccccHHHHccccccEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEcEEEEHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
maiadwhsrsnsdkklfgfcpfwqtsttatpsssasstqnlttsssnphvgvpnssrpatkTVSYVARsllpprrrlrldpsnnlyfpyepgkqtrsavrlkntskshvafkfqttapkscymrppggvlapgdsIIATVFKFveapennerqpldqkskdKFKIMSLKvkggidyvpelfdeqkdqVTVERILRVVFlnaerpspaLEKLKLQLAEAEAALEarkrpppdtgprvvgeglvIDEWKERREKYLARQQVEAVDSV
Flexible Loop (DISEMBL)
maiadwhsrsnsdkkLFGFCPFWQTSTTATPSSSASSTQNlttsssnphvgvpnssrpatktvsyvarsllpprrrlrldpsnnlyfpyepgkqtrsavrlkNTSKSHVafkfqttapkscymrPPGGVLAPGDSIIATVFKFVEapennerqpldqkskdkfkIMSLKVKGGIDYVPelfdeqkdqvtVERILRVVflnaerpspaLEKLKLQLAEAEAAlearkrpppdtgprvvgeglvidewKERREKYlarqqveavdsv
Low Complexity Region (SEG)
MAIADWHSRSNSDKKLFGFCPFWqtsttatpsssasstqnlttsssnpHVGVPNSSRPATKTVSYVArsllpprrrlrldpsnnlYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPSPaleklklqlaeaeaaleaRKRPPPDTGPRVVGEGLVIDEWKERREKYLARQQVEAVDSV
Disordered region (IsUnstruct)
**************KLFGFCPFWQT***********************************************************LYF*********************VAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVE*****************FKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNA***********************************VGEGLVIDEWK******************
Disordered Region (DISOPRED)
*****************************************************************************RLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAP**********KSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVF*************************************************************E*****
Disordered Region (DISEMBL)
**********NSDKKLFGFCPFWQTS*********************************TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTGPRVVGEGLVIDEWKERREKY************
Disordered Region (DISPRO)
*************KKLFGFCPFWQ****************************************YVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTGPRVVGEGLVIDEWKERREKYLARQQVE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIADWHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTGPRVVGEGLVIDEWKERREKYLARQQVEAVDSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q1ECE0	266	Vesicle-associated protei	yes	no	0.996	0.992	0.718	3e-96
Q8VYN2	295	Vesicle-associated protei	no	no	0.766	0.688	0.754	1e-88
Q8LPQ7	287	Vesicle-associated protei	no	no	0.739	0.682	0.691	6e-71
Q84WW5	239	Vesicle-associated protei	no	no	0.452	0.502	0.364	4e-13
Q9SHC8	239	Vesicle-associated protei	no	no	0.471	0.523	0.345	7e-09
Q8VZ95	256	Vesicle-associated protei	no	no	0.449	0.464	0.325	2e-08
Q9LVU1	220	Vesicle-associated protei	no	no	0.422	0.509	0.308	5e-07
B9DHD7	386	Vesicle-associated protei	no	no	0.407	0.279	0.35	2e-06
Q9SYC9	571	Vesicle-associated protei	no	no	0.467	0.217	0.293	5e-06
Q0VCY1	249	Vesicle-associated membra	yes	no	0.460	0.489	0.291	6e-06

>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1

 Score =  351 bits (900), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 191/266 (71%), Positives = 221/266 (83%), Gaps = 2/266 (0%)

Query: 1   MAIADWHSRSNSDKK-LFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPA 59
           M I D  + S   KK LF  CPFWQ  +T + SS+ +  QN  +   N +  +   S+P 
Sbjct: 1   MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
             T+S VARSLLP RRRLRLDPS+ LYFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct: 61  L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119

Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
           SCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+QPL+QKSK KFKIMSLKVK G++YVPE
Sbjct: 120 SCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPE 179

Query: 180 LFDEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTGPRVVGE 239
           LFDEQKDQV VE++LRV+F++A+RPS ALEKLK QL EAEAA+EARK+PPP+TGPRVVGE
Sbjct: 180 LFDEQKDQVAVEQVLRVIFIDADRPSAALEKLKRQLDEAEAAVEARKKPPPETGPRVVGE 239

Query: 240 GLVIDEWKERREKYLARQQVEAVDSV 265
           GLVIDEWKERREKYLARQQVE+VDS+
Sbjct: 240 GLVIDEWKERREKYLARQQVESVDSL 265

May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1

 Score =  325 bits (834), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/204 (75%), Positives = 184/204 (90%), Gaps = 1/204 (0%)

Query: 62  TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
           +VS VA+S LP +RRL+LDPS  LYFPYEPGKQ RSA+++KNTSKSHVAFKFQTTAPKSC
Sbjct: 93  SVSSVAKSFLPTKRRLKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSC 152

Query: 122 YMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELF 181
           +MRPPG +LAPG++IIATVFKFVE PENNE+ P+DQ+S+ KFKIMSLKVKG +DYVPELF
Sbjct: 153 FMRPPGAILAPGETIIATVFKFVEPPENNEK-PMDQRSRVKFKIMSLKVKGPMDYVPELF 211

Query: 182 DEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTGPRVVGEGL 241
           DEQKD V+ E+ILRV+FL+ ER +PALEKLK QLAEA+AA+EARK+PP +TGP+++GEGL
Sbjct: 212 DEQKDDVSKEQILRVIFLDPERSNPALEKLKRQLAEADAAVEARKKPPEETGPKMIGEGL 271

Query: 242 VIDEWKERREKYLARQQVEAVDSV 265
           VIDEWKERRE+YLA+QQ E  DSV
Sbjct: 272 VIDEWKERRERYLAQQQGEGADSV 295

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43 PE=2 SV=1

 Score =  267 bits (682), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 137/198 (69%), Positives = 167/198 (84%), Gaps = 2/198 (1%)

Query: 62  TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
           ++S VARSLLP +RRL+LDPS  LYFPYEPGKQ RSA+++KNTSKSHVAFKFQTT PKSC
Sbjct: 85  SMSSVARSLLPTKRRLKLDPSAKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSC 144

Query: 122 YMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELF 181
           +MRP G +LAPG+ IIATVFKFVE PENNE+ P++QKS  KFKIMSLK+K   DY+PELF
Sbjct: 145 FMRPAGAILAPGEEIIATVFKFVEPPENNEK-PMEQKSGVKFKIMSLKMKVPTDYMPELF 203

Query: 182 DEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPD-TGPRVVGEG 240
           +EQKD V+ E+++RVVFL+ E P+  +EKLK QLAEA+AA EARK+      GP+ +GEG
Sbjct: 204 EEQKDHVSEEQVMRVVFLDPENPNSMMEKLKSQLAEADAADEARKKASEGIVGPKPIGEG 263

Query: 241 LVIDEWKERREKYLARQQ 258
           LVIDEWK+RRE+YLA+QQ
Sbjct: 264 LVIDEWKQRRERYLAQQQ 281

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 9/129 (6%)

Query: 85  LYFPYEPGKQTRSAVRLKN-TSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143
           L FP+E  KQ+  +++L N T+   VAFK +TT P+   +RP  GV+ PGDS   TV   
Sbjct: 14  LKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTV--- 70

Query: 144 VEAPENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVVFLN 200
               +  +  PLD + KDKF + ++ V  G    + + E+F+++  +V  +  LRVV++ 
Sbjct: 71  --TMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIP 128

Query: 201 AERPSPALE 209
           A  PSP  E
Sbjct: 129 ANPPSPVPE 137

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 14/139 (10%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS- 135
           L +DP + L FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P  S 
Sbjct: 6   LTIDPVD-LQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSS 64

Query: 136 -IIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVE 191
            ++ T+    EA       P D + KDKF +  +    G    D   E+F ++      E
Sbjct: 65  EVLVTMQAQKEA-------PADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEE 117

Query: 192 RILRVVFLNAER-PSPALE 209
             LRVV++   R PSP  E
Sbjct: 118 TKLRVVYVAPPRPPSPVRE 136

Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 13/132 (9%)

Query: 84  NLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS--IIATVF 141
           +L FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P  +  ++ T+ 
Sbjct: 29  DLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPRSTCEVLVTMQ 88

Query: 142 KFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVVF 198
              EAP        D + KDKF +  +    G+   +  PE+F ++      E  LRV +
Sbjct: 89  AQKEAPS-------DMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTY 141

Query: 199 LNAER-PSPALE 209
           +   R PSP  E
Sbjct: 142 VAPPRPPSPVHE 153

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 8/120 (6%)

Query: 83  NNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFK 142
           + L F +E  KQ+   +++ N ++++VAFK +TT+PK  ++RP  GV+ P DS I  V  
Sbjct: 15  DELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRV-- 72

Query: 143 FVEAPENNERQPLDQKSKDKFKIMSLKV--KGGIDYVPE-LFDEQKDQVTVERILRVVFL 199
                +     P D + KDKF + S  V     +D +P+  F +   +   E  L+V ++
Sbjct: 73  ---TLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYI 129

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 56/120 (46%), Gaps = 12/120 (10%)

Query: 85  LYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVF--K 142
           L F  +  KQT   V+L NT+  +VAFK +TT+PK   +RP  GV+AP  +   TV    
Sbjct: 13  LQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVIMQA 72

Query: 143 FVEAPENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVVFL 199
           F E P        D   KDKF I S  V       D    +F + + +   E  LRV  +
Sbjct: 73  FKEPPP-------DMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLV 125

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 9/133 (6%)

Query: 84  NLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143
           ++ FP E  KQ   ++ L N + ++VAFK QTT PK   ++P  GV+ P  S    V   
Sbjct: 13  DIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSS--CEVLVV 70

Query: 144 VEAPENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVVFLN 200
           ++A    +  P D++ KDK       V+ G    +   E+F ++      E I +++++ 
Sbjct: 71  MQAL---KEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKIIYVA 127

Query: 201 AERP-SPALEKLK 212
             +P SP  E L+
Sbjct: 128 PPQPQSPVQEGLE 140

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0VCY1|VAPA_BOVIN Vesicle-associated membrane protein-associated protein A OS=Bos taurus GN=VAPA PE=2 SV=1

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 22/144 (15%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L LDP  +L F         + ++L+N S   V FK +TTAP+   +RP  G++ PG ++
Sbjct: 15  LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGLTV 74

Query: 137 IATVFKFVEAPENNERQPLD----QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVER 192
             +V            QP D    +KSK KF + ++     I  +  ++ E K    ++ 
Sbjct: 75  TVSVM----------LQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDS 124

Query: 193 ILRVVF--------LNAERPSPAL 208
            LR VF        LN   PS A+
Sbjct: 125 KLRCVFEMPNENDKLNDMEPSKAV 148

May play a role in vesicle trafficking.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
224117290	264	predicted protein [Populus trichocarpa]	0.958	0.962	0.765	1e-96
312282877	271	unnamed protein product [Thellungiella h	0.988	0.966	0.726	8e-96
225461302	264	PREDICTED: vesicle-associated protein 4-	0.984	0.988	0.712	3e-95
18423592	266	membrane-associated mannitol-induced pro	0.996	0.992	0.718	2e-94
224116236	235	predicted protein [Populus trichocarpa]	0.815	0.919	0.743	2e-92
297792835	269	membrane-associated mannitol-induced [Ar	0.992	0.977	0.705	7e-92
388503260	266	unknown [Lotus japonicus]	0.943	0.939	0.696	2e-90
224122882	200	predicted protein [Populus trichocarpa]	0.747	0.99	0.889	4e-90
8809582	295	membrane associated protein [Arabidopsis	0.996	0.894	0.647	1e-89
356543790	263	PREDICTED: vesicle-associated protein 4-	0.962	0.969	0.706	2e-89

>gi|224117290|ref|XP_002317531.1| predicted protein [Populus trichocarpa] gi|222860596|gb|EEE98143.1| predicted protein [Populus trichocarpa]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 199/260 (76%), Positives = 221/260 (85%), Gaps = 6/260 (2%)

Query: 8   SRSNSDK--KLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNP--HVGVPNSSRPATKTV 63
           +++N D   KLF  CPFWQT+T ++ SSS  +  +    S N   HV V NSS   + TV
Sbjct: 7   NKTNGDHNMKLFRLCPFWQTATNSSTSSSTQNLNHSHKGSGNSVRHVAV-NSSGLKSTTV 65

Query: 64  SYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM 123
           S VARSLLP  RRLRLDP+NNLYFPYEPGKQ RSA+RLKN SKSHVAFKFQTTAPKSCYM
Sbjct: 66  SSVARSLLPAPRRLRLDPANNLYFPYEPGKQVRSAIRLKNRSKSHVAFKFQTTAPKSCYM 125

Query: 124 RPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDE 183
           RPPGG+LAPG+S+IATVFKFVE PENN +Q +DQKS  KFKI+SLKVKGGI+YVPELFDE
Sbjct: 126 RPPGGILAPGESLIATVFKFVEQPENNAKQ-MDQKSNVKFKIVSLKVKGGIEYVPELFDE 184

Query: 184 QKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTGPRVVGEGLVI 243
           QKDQVTVERILRVVFL+AE PSPA+EKLKLQLAEAEAALEARK+PPPDTGPRVVGEGLVI
Sbjct: 185 QKDQVTVERILRVVFLDAEHPSPAMEKLKLQLAEAEAALEARKKPPPDTGPRVVGEGLVI 244

Query: 244 DEWKERREKYLARQQVEAVD 263
           DEWKERREKYLARQ VEA +
Sbjct: 245 DEWKERREKYLARQHVEAAE 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282877|dbj|BAJ34304.1| unnamed protein product [Thellungiella halophila]

 Score =  355 bits (912), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 197/271 (72%), Positives = 228/271 (84%), Gaps = 9/271 (3%)

Query: 1   MAIADWHSRSNSDKKLFGFCPFWQ--TSTTATPSSSASSTQNLTTSS----SNPHV-GVP 53
           MAI+D  +RS   +KLF  CPFWQ   +T+++PSS+ + +QN  +S     +N  V GVP
Sbjct: 1   MAISDRQNRSADRQKLFRLCPFWQRRNTTSSSPSSTQNPSQNYRSSRRGHRNNTDVSGVP 60

Query: 54  NSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKF 113
             S  +  TVS VA+SLLP RRRLRLDPS+ LYFPYEPGKQ RSA +LKNTSKSH AFKF
Sbjct: 61  KPS--SALTVSSVAKSLLPARRRLRLDPSSYLYFPYEPGKQVRSATKLKNTSKSHTAFKF 118

Query: 114 QTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGG 173
           QTTAPKSCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+Q L+QKSK KFKIMSLKVK G
Sbjct: 119 QTTAPKSCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQKLNQKSKVKFKIMSLKVKPG 178

Query: 174 IDYVPELFDEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTG 233
           ++YVPELFDEQKDQVTVER+LRV+FL+A+RPS ALEKLK Q+ EAEAA+E RK+PPP+TG
Sbjct: 179 VEYVPELFDEQKDQVTVERVLRVIFLDADRPSAALEKLKRQVDEAEAAVEERKKPPPETG 238

Query: 234 PRVVGEGLVIDEWKERREKYLARQQVEAVDS 264
           PRVVGEGLVIDEWKERREKYLARQQVEA+DS
Sbjct: 239 PRVVGEGLVIDEWKERREKYLARQQVEAIDS 269

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461302|ref|XP_002284424.1| PREDICTED: vesicle-associated protein 4-1 [Vitis vinifera] gi|147780490|emb|CAN60507.1| hypothetical protein VITISV_002788 [Vitis vinifera] gi|302143088|emb|CBI20383.3| unnamed protein product [Vitis vinifera]

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 191/268 (71%), Positives = 221/268 (82%), Gaps = 7/268 (2%)

Query: 1   MAIADWHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNS-SRPA 59
           M IAD   + +S+ KL+  CPFWQ+   +    S+SSTQN           V ++ +R +
Sbjct: 1   MGIAD-RRKPSSEGKLWRLCPFWQSGNGSP---SSSSTQNFQQHKIRGRRHVDDTDTRSS 56

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
              VS VARS LP RRRLRLDP+NNLYFPYEPGKQ +SAVR+KNTS+SHVAFKFQTTAPK
Sbjct: 57  PSKVSSVARSFLPTRRRLRLDPANNLYFPYEPGKQVKSAVRMKNTSRSHVAFKFQTTAPK 116

Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNER--QPLDQKSKDKFKIMSLKVKGGIDYV 177
           SCYMRPPGG+LAPG+SIIATVFKF+E PENNE+  + LDQKS  KFKIMSLKVK G+DYV
Sbjct: 117 SCYMRPPGGILAPGESIIATVFKFMEHPENNEKNEKQLDQKSNVKFKIMSLKVKAGMDYV 176

Query: 178 PELFDEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTGPRVV 237
           PELFDEQK++V+VERIL VVFL+ ERPSPALEKLK QLAEAEAA+EARK+PPP+ GPRV+
Sbjct: 177 PELFDEQKEKVSVERILHVVFLDVERPSPALEKLKRQLAEAEAAVEARKKPPPEIGPRVI 236

Query: 238 GEGLVIDEWKERREKYLARQQVEAVDSV 265
           GEGLVIDEWKERREKYLA+QQVEAVDSV
Sbjct: 237 GEGLVIDEWKERREKYLAQQQVEAVDSV 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423592|ref|NP_568804.1| membrane-associated mannitol-induced protein [Arabidopsis thaliana] gi|122237442|sp|Q1ECE0.1|VAP41_ARATH RecName: Full=Vesicle-associated protein 4-1; AltName: Full=Plant VAP homolog 4-1; Short=AtPVA41; AltName: Full=Protein MEMBRANE-ASSOCIATED MANNITOL-INDUCED; Short=AtMAMI; AltName: Full=VAMP-associated protein 4-1 gi|107738368|gb|ABF83684.1| At5g54110 [Arabidopsis thaliana] gi|332009069|gb|AED96452.1| membrane-associated mannitol-induced protein [Arabidopsis thaliana]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 191/266 (71%), Positives = 221/266 (83%), Gaps = 2/266 (0%)

Query: 1   MAIADWHSRSNSDKK-LFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPA 59
           M I D  + S   KK LF  CPFWQ  +T + SS+ +  QN  +   N +  +   S+P 
Sbjct: 1   MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
             T+S VARSLLP RRRLRLDPS+ LYFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct: 61  L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119

Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
           SCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+QPL+QKSK KFKIMSLKVK G++YVPE
Sbjct: 120 SCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPE 179

Query: 180 LFDEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTGPRVVGE 239
           LFDEQKDQV VE++LRV+F++A+RPS ALEKLK QL EAEAA+EARK+PPP+TGPRVVGE
Sbjct: 180 LFDEQKDQVAVEQVLRVIFIDADRPSAALEKLKRQLDEAEAAVEARKKPPPETGPRVVGE 239

Query: 240 GLVIDEWKERREKYLARQQVEAVDSV 265
           GLVIDEWKERREKYLARQQVE+VDS+
Sbjct: 240 GLVIDEWKERREKYLARQQVESVDSL 265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116236|ref|XP_002317246.1| predicted protein [Populus trichocarpa] gi|222860311|gb|EEE97858.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 168/226 (74%), Positives = 195/226 (86%), Gaps = 10/226 (4%)

Query: 40  NLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAV 99
            +  SS+ PH          + +VS VARSLLP RRRL+LDP++ LYFPYEPGKQ RSA+
Sbjct: 20  QIEGSSNPPH---------PSNSVSSVARSLLPTRRRLKLDPASKLYFPYEPGKQVRSAI 70

Query: 100 RLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKS 159
           R+KNTSKSHVAFKFQTTAPKSC+MRPPG +LAPG+SIIATVFKFVE PENNE+ P++QKS
Sbjct: 71  RIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVELPENNEK-PMEQKS 129

Query: 160 KDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAE 219
           K KFKIMSLKVKG +DYVPELFDEQKDQV +E+ILRV+FL+ ERPSPALEKLK QLA+A+
Sbjct: 130 KVKFKIMSLKVKGVMDYVPELFDEQKDQVAIEQILRVIFLDPERPSPALEKLKRQLADAD 189

Query: 220 AALEARKRPPPDTGPRVVGEGLVIDEWKERREKYLARQQVEAVDSV 265
           AA+EARK+PP D GPR++GEGLVIDEWKERRE+YLARQQ E VDSV
Sbjct: 190 AAVEARKKPPEDAGPRIIGEGLVIDEWKERRERYLARQQGEGVDSV 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792835|ref|XP_002864302.1| membrane-associated mannitol-induced [Arabidopsis lyrata subsp. lyrata] gi|297310137|gb|EFH40561.1| membrane-associated mannitol-induced [Arabidopsis lyrata subsp. lyrata]

 Score =  342 bits (878), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 189/268 (70%), Positives = 221/268 (82%), Gaps = 5/268 (1%)

Query: 1   MAIADWHSRSNSDKK-LFGFCPFWQTSTTATPSSSASS---TQNLTTSSSNPHVGVPNSS 56
           MA  D +   +  KK LF  CPFWQ   + T SSS+S+    QN  +   + +  +   S
Sbjct: 1   MATGDQNPSVDKKKKNLFRLCPFWQRRRSTTSSSSSSTQNPNQNYRSRHGHRNTDISAVS 60

Query: 57  RPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT 116
           + ++ T+S VARSLLP RRRLRLDPS+ LYFPYEPGKQ RSA++LKNTSKSH AFKFQTT
Sbjct: 61  K-SSLTMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTT 119

Query: 117 APKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDY 176
           APKSCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+Q L+QKSK KFKIMSLKVK G++Y
Sbjct: 120 APKSCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQKLNQKSKVKFKIMSLKVKPGVEY 179

Query: 177 VPELFDEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTGPRV 236
           VPELFDEQKDQV VE++LRV+F++A+RPS ALEKLK QL EAEAA+EARK+PPP+TGPRV
Sbjct: 180 VPELFDEQKDQVAVEQVLRVIFIDADRPSAALEKLKRQLDEAEAAVEARKKPPPETGPRV 239

Query: 237 VGEGLVIDEWKERREKYLARQQVEAVDS 264
           VGEGLVIDEWKERREKYLARQQVEA+DS
Sbjct: 240 VGEGLVIDEWKERREKYLARQQVEAIDS 267

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503260|gb|AFK39696.1| unknown [Lotus japonicus]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/267 (69%), Positives = 215/267 (80%), Gaps = 17/267 (6%)

Query: 9   RSNSDKKLFGFC--PFWQTSTTATPSSSA--------SSTQNLTTSSSNPHVGVPNSSRP 58
           +  SD K + FC  PFWQT+    PSSS+           QN++  S      V  S+  
Sbjct: 7   KPGSDVKGWSFCRMPFWQTNNHIPPSSSSSTTSYMHNGHHQNISFQS------VDRSTHQ 60

Query: 59  ATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAP 118
           A+ TVS VA+SLLP RRRLRLDPSN LYFPYEPGKQ RSA+ +KNT K+HVAFKFQTTAP
Sbjct: 61  ASPTVSSVAKSLLPTRRRLRLDPSNKLYFPYEPGKQVRSAIAIKNTCKTHVAFKFQTTAP 120

Query: 119 KSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVP 178
           KSCYMRPPGG+L+PG+SIIATVFKFVE PENNE+ PLD+KSK KFKIMSLKV+G  DYVP
Sbjct: 121 KSCYMRPPGGILSPGESIIATVFKFVEPPENNEK-PLDRKSKVKFKIMSLKVQGETDYVP 179

Query: 179 ELFDEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTGPRVVG 238
           ELFDEQ+DQV VE++LRV+FL+ ERPSPA++KLK QLAEAEAALE+RK+PP +TGPRV G
Sbjct: 180 ELFDEQRDQVAVEQVLRVIFLDPERPSPAMDKLKRQLAEAEAALESRKKPPEETGPRVAG 239

Query: 239 EGLVIDEWKERREKYLARQQVEAVDSV 265
           EGLVIDEWKERRE+YLARQQVE VDSV
Sbjct: 240 EGLVIDEWKERRERYLARQQVEGVDSV 266

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122882|ref|XP_002330387.1| predicted protein [Populus trichocarpa] gi|222871772|gb|EEF08903.1| predicted protein [Populus trichocarpa]

 Score =  337 bits (863), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 177/199 (88%), Positives = 190/199 (95%), Gaps = 1/199 (0%)

Query: 62  TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
           TVS VARSLLP RRRLRLDPSNNLYFPYEPGKQ +SAVRLKNTSKSHVAFKFQTTAPKSC
Sbjct: 3   TVSSVARSLLPTRRRLRLDPSNNLYFPYEPGKQVKSAVRLKNTSKSHVAFKFQTTAPKSC 62

Query: 122 YMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELF 181
           YMRPPGG+LAPG+S+IATVFKFV+ PENNE+Q LDQKSK KFKI+SLKVKGG++YVPELF
Sbjct: 63  YMRPPGGILAPGESLIATVFKFVDPPENNEKQ-LDQKSKAKFKIVSLKVKGGLEYVPELF 121

Query: 182 DEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTGPRVVGEGL 241
           DEQKDQVTVER+LRVVFL+AERPSPA+EKLK QLAEAEAALE RK+PPPDTGP VVGEGL
Sbjct: 122 DEQKDQVTVERVLRVVFLDAERPSPAMEKLKRQLAEAEAALEVRKKPPPDTGPPVVGEGL 181

Query: 242 VIDEWKERREKYLARQQVE 260
           VIDEWKERREKYLARQQVE
Sbjct: 182 VIDEWKERREKYLARQQVE 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8809582|dbj|BAA97133.1| membrane associated protein [Arabidopsis thaliana]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/295 (64%), Positives = 221/295 (74%), Gaps = 31/295 (10%)

Query: 1   MAIADWHSRSNSDKK-LFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPA 59
           M I D  + S   KK LF  CPFWQ  +T + SS+ +  QN  +   N +  +   S+P 
Sbjct: 1   MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
             T+S VARSLLP RRRLRLDPS+ LYFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct: 61  L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119

Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
           SCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+QPL+QKSK KFKIMSLKVK G++YVPE
Sbjct: 120 SCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPE 179

Query: 180 LFDEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTGPRVVGE 239
           LFDEQKDQV VE++LRV+F++A+RPS ALEKLK QL EAEAA+EARK+PPP+TGPRVVGE
Sbjct: 180 LFDEQKDQVAVEQVLRVIFIDADRPSAALEKLKRQLDEAEAAVEARKKPPPETGPRVVGE 239

Query: 240 GLVIDEW-----------------------------KERREKYLARQQVEAVDSV 265
           GLVIDEW                             KERREKYLARQQVE+VDS+
Sbjct: 240 GLVIDEWVTYNYKIFGPFIVVPSFSHIFTKVCVIYQKERREKYLARQQVESVDSL 294

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543790|ref|XP_003540343.1| PREDICTED: vesicle-associated protein 4-2-like [Glycine max]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 183/259 (70%), Positives = 213/259 (82%), Gaps = 4/259 (1%)

Query: 9   RSNSDKKLFGFC--PFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYV 66
           +S SD K + FC  PFWQT+ T + SSS S   N+   S N    V  SS  ++ TVS V
Sbjct: 7   KSGSDGKGWSFCRMPFWQTTHTPS-SSSMSYMHNVHQQSQNNAQSVDRSSHHSSTTVSSV 65

Query: 67  ARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPP 126
           A+SLLP +RRLRLDPSN LYFPYEPGKQ RSA+ +KNT KSHVAFKFQTTAPKSCYMRPP
Sbjct: 66  AKSLLPTKRRLRLDPSNKLYFPYEPGKQVRSAIAIKNTCKSHVAFKFQTTAPKSCYMRPP 125

Query: 127 GGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKD 186
           GG+LAPG+SIIATVFKFVE PENNE+  +D+KSK KFKIMSLKV+G +DYVPELFDEQ+D
Sbjct: 126 GGILAPGESIIATVFKFVEPPENNEKS-IDKKSKVKFKIMSLKVQGEMDYVPELFDEQRD 184

Query: 187 QVTVERILRVVFLNAERPSPALEKLKLQLAEAEAALEARKRPPPDTGPRVVGEGLVIDEW 246
           QV +E+ILRV+FL+ ERPSP L+KLK  LAEA+AALEARK+PP + GPRV GEGLVIDEW
Sbjct: 185 QVAIEQILRVMFLDPERPSPVLDKLKRMLAEADAALEARKKPPEEKGPRVAGEGLVIDEW 244

Query: 247 KERREKYLARQQVEAVDSV 265
           KERRE+YLA+QQV+ VDSV
Sbjct: 245 KERRERYLAQQQVQGVDSV 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2166582	266	MAMI "membrane-associated mann	0.996	0.992	0.578	6.3e-76
UNIPROTKB|Q6YZ10	233	P0473D02.15 "cDNA clone:001-01	0.671	0.763	0.737	4.4e-68
TAIR|locus:2138401	287	AT4G05060 [Arabidopsis thalian	0.649	0.599	0.620	7.8e-55
TAIR|locus:2126921	239	AT4G00170 [Arabidopsis thalian	0.433	0.481	0.370	7.9e-14
TAIR|locus:2101766	256	VAP27-1 "VAMP/SYNAPTOBREVIN-AS	0.433	0.449	0.322	3.9e-09
TAIR|locus:2055557	239	PVA12 "plant VAP homolog 12" [	0.433	0.481	0.338	1e-08
UNIPROTKB|Q5F419	151	VAPA "Uncharacterized protein"	0.354	0.622	0.31	7.6e-08
UNIPROTKB|G4N022	285	MGG_06183 "Uncharacterized pro	0.373	0.347	0.304	1.2e-07
TAIR|locus:2171594	220	AT5G47180 [Arabidopsis thalian	0.407	0.490	0.318	1.6e-07
TAIR|locus:2061461	149	AT2G23830 [Arabidopsis thalian	0.407	0.724	0.284	2.3e-07

TAIR|locus:2166582 MAMI "membrane-associated mannitol-induced" [Arabidopsis thaliana (taxid:3702)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 154/266 (57%), Positives = 177/266 (66%)

Query:     1 MAIADWHSRSNSDKK-LFGFCPFWXXXXXXXXXXXXXXXXXXXXXXXXXHVGVPNSSRPA 59
             M I D  + S   KK LF  CPFW                         +  +   S+P 
Sbjct:     1 MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60

Query:    60 TKTVSYVAXXXXXXXXXXXXXXXXXXYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
               T+S VA                  YFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct:    61 L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119

Query:   120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
             SCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+QPL+QKSK KFKIMSLKVK G++YVPE
Sbjct:   120 SCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPE 179

Query:   180 LFDEQKDQVTVERILRVVFLNAERPSPXXXXXXXXXXXXXXXXXXRKRPPPDTGPRVVGE 239
             LFDEQKDQV VE++LRV+F++A+RPS                   RK+PPP+TGPRVVGE
Sbjct:   180 LFDEQKDQVAVEQVLRVIFIDADRPSAALEKLKRQLDEAEAAVEARKKPPPETGPRVVGE 239

Query:   240 GLVIDEWKERREKYLARQQVEAVDSV 265
             GLVIDEWKERREKYLARQQVE+VDS+
Sbjct:   240 GLVIDEWKERREKYLARQQVESVDSL 265

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006970 "response to osmotic stress" evidence=IEP

UNIPROTKB|Q6YZ10 P0473D02.15 "cDNA clone:001-014-D04, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 132/179 (73%), Positives = 150/179 (83%)

Query:    86 YFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVE 145
             +FPYEPGKQ RSAV++KN SKSHVAFKFQTTAPKSC+MRPPGG+LAPG+SIIATVFKFVE
Sbjct:    55 FFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFKFVE 114

Query:   146 APENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPS 205
              PENNE+ PLDQK K KFKI+SLKVKG ++YVPELFDEQK+QV VE+ILRVVFL+AER +
Sbjct:   115 HPENNEK-PLDQKCKVKFKIVSLKVKGPMEYVPELFDEQKNQVAVEQILRVVFLDAERQT 173

Query:   206 PXXXXXXXXXXXXXXXXXXRKRPPPDTGPRVVGEGLVIDEWKERREKYLARQQVEAVDS 264
             P                  RK+PP DTGPR+VGEGLVIDEWKERRE+YLARQQ+E VDS
Sbjct:   174 PQMDKLKRQLAEAEAALEARKKPPEDTGPRIVGEGLVIDEWKERRERYLARQQIEGVDS 232

GO:0009739 "response to gibberellin stimulus" evidence=IMP

TAIR|locus:2138401 AT4G05060 [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 108/174 (62%), Positives = 132/174 (75%)

Query:    86 YFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVE 145
             YFPYEPGKQ RSA+++KNTSKSHVAFKFQTT PKSC+MRP G +LAPG+ IIATVFKFVE
Sbjct:   109 YFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFVE 168

Query:   146 APENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPS 205
              PENNE+ P++QKS  KFKIMSLK+K   DY+PELF+EQKD V+ E+++RVVFL+ E P+
Sbjct:   169 PPENNEK-PMEQKSGVKFKIMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLDPENPN 227

Query:   206 PXXXXXXXXXXXXXXXXXXRKRPPPD-TGPRVVGEGLVIDEWKERREKYLARQQ 258
                                RK+      GP+ +GEGLVIDEWK+RRE+YLA+QQ
Sbjct:   228 SMMEKLKSQLAEADAADEARKKASEGIVGPKPIGEGLVIDEWKQRRERYLAQQQ 281

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 46/124 (37%), Positives = 73/124 (58%)

Query:    87 FPYEPGKQTRSAVRLKN-TSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVE 145
             FP+E  KQ+  +++L N T+   VAFK +TT P+   +RP  GV+ PGDS   TV   ++
Sbjct:    16 FPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTVT--MQ 73

Query:   146 APENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVVFLNAE 202
             A    +  PLD + KDKF + ++ V  G    + + E+F+++  +V  +  LRVV++ A 
Sbjct:    74 A---QKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIPAN 130

Query:   203 RPSP 206
              PSP
Sbjct:   131 PPSP 134

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 40/124 (32%), Positives = 63/124 (50%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
             FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P  +    V   ++A
Sbjct:    32 FPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPRST--CEVLVTMQA 89

Query:   147 PENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVVFLNAER 203
                 +  P D + KDKF +  +    G+   +  PE+F ++      E  LRV ++   R
Sbjct:    90 ---QKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPR 146

Query:   204 P-SP 206
             P SP
Sbjct:   147 PPSP 150

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006886 "intracellular protein transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 42/124 (33%), Positives = 63/124 (50%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
             FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P  S  + V   ++A
Sbjct:    15 FPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSS--SEVLVTMQA 72

Query:   147 PENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVVFLNAER 203
                 +  P D + KDKF +  +    G    D   E+F ++      E  LRVV++   R
Sbjct:    73 ---QKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVYVAPPR 129

Query:   204 P-SP 206
             P SP
Sbjct:   130 PPSP 133

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006605 "protein targeting" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

UNIPROTKB|Q5F419 VAPA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 123 (48.4 bits), Expect = 7.6e-08, P = 7.6e-08
 Identities = 31/100 (31%), Positives = 53/100 (53%)

Query:    99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQK 158
             ++L+N S   V FK +TTAP+   +RP  G++ PG S+I +V       +  +  P ++K
Sbjct:    36 LKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSSVIVSVML-----QPFDYDP-NEK 89

Query:   159 SKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVF 198
             SK KF + ++     I  +  ++ E K    ++  LR VF
Sbjct:    90 SKHKFMVQTIYAPPNISDMEAVWKEAKPDELMDSKLRCVF 129

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|G4N022 MGG_06183 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 137 (53.3 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 32/105 (30%), Positives = 58/105 (55%)

Query:    99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQK 158
             ++++N +   +AFK +TTAPK   +RP  G + P   +   V   ++A + +   P D K
Sbjct:    24 LKIRNPNNHPIAFKVKTTAPKQYCVRPNSGRIEPDHEVEVQVL--LQAMKQDP--PADAK 79

Query:   159 SKDKFKIMSLKVKGGIDY--VPELFDEQKDQVTVERILRVVFLNA 201
              +DKF + ++ + G  ++  V +++D  +    VER +RV FL A
Sbjct:    80 CRDKFLVQAVPISGDKEFATVADIWDSVEKSAIVERKIRVTFLPA 124

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 37/116 (31%), Positives = 63/116 (54%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
             F +E  KQ+   +++ N ++++VAFK +TT+PK  ++RP  GV+ P DS I  V   ++A
Sbjct:    19 FLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRVT--LQA 76

Query:   147 PENNERQPLDQKSKDKFKIMSLKVKG--GIDYVPE-LFDEQKDQVTVERILRVVFL 199
                    P D + KDKF + S  V     +D +P+  F +   +   E  L+V ++
Sbjct:    77 ---QREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYI 129

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 33/116 (28%), Positives = 58/116 (50%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
             FP+E  KQ   ++ L N + ++VAFK +TT   +  +RP  G++ P  +      K +  
Sbjct:    16 FPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPKSTC-----KVLVT 70

Query:   147 PENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVVFL 199
              +  +  P D +S +KF I S+    G+   +   E+F ++   V  E  LRV ++
Sbjct:    71 MQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLRVTYV 126

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0042991 "transcription factor import into nucleus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1ECE0	VAP41_ARATH	No assigned EC number	0.7180	0.9962	0.9924	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
pfam00635	109	pfam00635, Motile_Sperm, MSP (Major sperm protein)	6e-27
COG5066	242	COG5066, SCS2, VAMP-associated protein involved in	4e-04

>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain

 Score =  100 bits (251), Expect = 6e-27
 Identities = 38/116 (32%), Positives = 50/116 (43%), Gaps = 14/116 (12%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L +DP + L+F     KQ  S + L N S   VAFK +TT PK   +RP  G+L PG+S+
Sbjct: 2   LTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGESV 61

Query: 137 IATVFKFVEAPENNERQPLDQ----KSKDKFKIMSLKVKGGIDYVPELFDEQKDQV 188
             T+           RQP D+      KDKF I   +         E F       
Sbjct: 62  TITIT----------RQPFDKEPGDPKKDKFVIQYTEAPDDAKDAKEAFKRAWKNG 107

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109

>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 82  SNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVF 141
           S    F      +++    ++N S   V FK +TTAPK   +RP  G++ P  ++   V 
Sbjct: 6   SPQTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEV- 64

Query: 142 KFVEAPENNERQPLDQKSKDKFKIMSLKVK 171
             +      E  P D K +DKF I S +  
Sbjct: 65  --ILQGLTEEPAP-DFKCRDKFLIQSYRFD 91

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG0439	218	consensus VAMP-associated protein involved in inos	99.96
COG5066	242	SCS2 VAMP-associated protein involved in inositol	99.92
PF00635	109	Motile_Sperm: MSP (Major sperm protein) domain; In	99.89
PF14874	102	PapD-like: Flagellar-associated PapD-like	98.38
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	96.52
PF14646	426	MYCBPAP: MYCBP-associated protein family	94.39
PRK09918	230	putative fimbrial chaperone protein; Provisional	93.93
PF07610	45	DUF1573: Protein of unknown function (DUF1573); In	91.19
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	90.49
PRK15249	253	fimbrial chaperone protein StbB; Provisional	89.46
PRK11385	236	putativi pili assembly chaperone; Provisional	88.84
PRK09926	246	putative chaperone protein EcpD; Provisional	87.98
PRK15299	227	fimbrial chaperone protein StiB; Provisional	87.37
PRK15192	234	fimbrial chaperone BcfG; Provisional	85.76
PRK15246	233	fimbrial assembly chaperone StbE; Provisional	85.67
PRK15211	229	fimbrial chaperone protein PefD; Provisional	85.36
PRK15295	226	fimbrial assembly chaperone SthB; Provisional	84.93
COG3121	235	FimC P pilus assembly protein, chaperone PapD [Cel	83.57
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	81.39
PRK15208	228	long polar fimbrial chaperone LpfB; Provisional	80.48

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2e-29  Score=221.85  Aligned_cols=188  Identities=37%  Similarity=0.490  Sum_probs=162.7

Q ss_pred             CCCCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCc
Q 024590           71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENN  150 (265)
Q Consensus        71 ~p~~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~  150 (265)
                      +..+.+|.++|..+|+|.+++.+++++.|+|+|+++.+||||||||+|++|+|||+.|+|.||+++.|.|.++   |. .
T Consensus         3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q---~~-~   78 (218)
T KOG0439|consen    3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQ---PF-E   78 (218)
T ss_pred             ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEec---cC-c
Confidence            3466889999988999999999999999999999999999999999999999999999999999999999886   42 2


Q ss_pred             CCCCCCCCCCCeEEEEEEEeCCC-CCChhhhhhccC--CCcceEEEEEEEEecCCCCChHHHHH---HHhHHHHHHHHHH
Q 024590          151 ERQPLDQKSKDKFKIMSLKVKGG-IDYVPELFDEQK--DQVTVERILRVVFLNAERPSPALEKL---KLQLAEAEAALEA  224 (265)
Q Consensus       151 E~pp~~~~~kDKFLVqS~~v~~~-~d~~~elFk~~~--~~~i~e~kLrV~fv~p~~pSp~~~~l---~~~~~~a~~~~ea  224 (265)
                      .. |.+.+|+|||+||++.++.+ ...+.++|+..+  +..+.+.+++|.|+.|..+.......   ..+....++...+
T Consensus        79 ~~-P~d~~~r~kF~v~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (218)
T KOG0439|consen   79 KS-PPDFKSRHKFLIQSLKAPPPTTRDVVDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKLQKAKKKEAEKEAFGEA  157 (218)
T ss_pred             cC-chhhcccceEEEEEEecCCccccchhhhccccccccccccceeeEEEeeCCCCCcccccccccccccCCcccccccc
Confidence            22 77888999999999999986 677899999988  78889999999999988766665555   6666777777777


Q ss_pred             hcCCCCCC---CCceeccccchhhh------------------HHHHHHHHHHhhhhhcc
Q 024590          225 RKRPPPDT---GPRVVGEGLVIDEW------------------KERREKYLARQQVEAVD  263 (265)
Q Consensus       225 ~~~~~~~~---~~~~~~e~~~~~~~------------------~~~r~~~~~~~~~~~~~  263 (265)
                      ........   .+...++.+++++|                  +++++++++.+|.+...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (218)
T KOG0439|consen  158 TKEASDGEVCVKSKEFGEKLELKEELKAFKLKANKVDEERLLKKKKEGRLLAELQAELVI  217 (218)
T ss_pred             ccccCcccccchhhhhhccccchhhhhccccccccccccchhhhhhhHHHHHhhhhhhcc
Confidence            77776654   47788999999999                  89999999999987654

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

Probab=99.92  E-value=3.2e-25  Score=196.76  Aligned_cols=118  Identities=24%  Similarity=0.360  Sum_probs=105.7

Q ss_pred             EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCCCCC
Q 024590           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD  156 (265)
Q Consensus        77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~~  156 (265)
                      |.++|  .+.|..++..+.++.+.|.|++..+|+||||||+|+.||||||.|+|.|++++.|.|+|+   ++..| |-++
T Consensus         3 veisp--~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq---~l~eE-papd   76 (242)
T COG5066           3 VEISP--QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQ---GLTEE-PAPD   76 (242)
T ss_pred             eEecC--ceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEee---ccccC-CCCC
Confidence            67787  688888889999999999999999999999999999999999999999999999999997   54444 4678


Q ss_pred             CCCCCeEEEEEEEeCCCC--CChhhhhhccCCCcceEEEEEEEEec
Q 024590          157 QKSKDKFKIMSLKVKGGI--DYVPELFDEQKDQVTVERILRVVFLN  200 (265)
Q Consensus       157 ~~~kDKFLVqS~~v~~~~--d~~~elFk~~~~~~i~e~kLrV~fv~  200 (265)
                      .+|+||||||++..+...  .++.++|++..+.-+.++||+|+|..
T Consensus        77 fKCrdKFLiqs~~~~~~l~g~d~ad~wt~~sk~~i~~rkIrcvyse  122 (242)
T COG5066          77 FKCRDKFLIQSYRFDWRLSGSDFADHWTSSSKKPIWTRKIRCVYSE  122 (242)
T ss_pred             ccccceeEEEEeccChhhccchHHHHHHhhccccchhhheeEEeec
Confidence            999999999999998753  45799999998888999999999983

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm

Probab=99.89  E-value=1.8e-22  Score=158.38  Aligned_cols=102  Identities=31%  Similarity=0.500  Sum_probs=81.6

Q ss_pred             EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCCCCC
Q 024590           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD  156 (265)
Q Consensus        77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~~  156 (265)
                      |.|+|.+.|.|++++++..++.|+|+|+++.+||||||||+|.+|+|+|+.|+|.||+++.|.|+++   |....  +. 
T Consensus         2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~---~~~~~--~~-   75 (109)
T PF00635_consen    2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQ---PFDFE--PS-   75 (109)
T ss_dssp             CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE----SSSTT--TT-
T ss_pred             eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEE---ecccC--CC-
Confidence            7899999999999999999999999999999999999999999999999999999999999999996   43322  11 


Q ss_pred             CCCCCeEEEEEEEeCCCCC----Chhhhhhcc
Q 024590          157 QKSKDKFKIMSLKVKGGID----YVPELFDEQ  184 (265)
Q Consensus       157 ~~~kDKFLVqS~~v~~~~d----~~~elFk~~  184 (265)
                      ...+|||+|+++.++++..    ....+|++.
T Consensus        76 ~~~~dkf~I~~~~~~~~~~~~~~~~~~~~~~~  107 (109)
T PF00635_consen   76 NKKKDKFLIQSIVVPDNATDPKKDFKQIWKNG  107 (109)
T ss_dssp             STSSEEEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred             CCCCCEEEEEEEEcCCCccchhhhHHHHHhcc
Confidence            2239999999999987653    356677654

These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=98.38  E-value=5.4e-06  Score=64.51  Aligned_cols=68  Identities=29%  Similarity=0.408  Sum_probs=59.5

Q ss_pred             CcEEeeCCCceEeeC-CCCCeeEEEEEEEcCCCCeEEEEEeeCC--CcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTTA--PKSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~-e~~k~vss~LtLkN~S~~~VAFKVKTTa--Pk~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      ..|.++|. +|.|-. ..|...+..|+|+|.+..+..|+|+.-.  ...|.|.|..|+|+||+++.+.|.+.
T Consensus         2 P~l~v~P~-~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~   72 (102)
T PF14874_consen    2 PTLEVSPK-ELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFS   72 (102)
T ss_pred             CEEEEeCC-EEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEE
Confidence            35899995 999976 4677888999999999999999998543  56799999999999999999999996

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=96.52  E-value=0.072  Score=42.77  Aligned_cols=62  Identities=19%  Similarity=0.368  Sum_probs=51.0

Q ss_pred             EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCC---C------cceEeeCCeeeeCCCCeEEEEEEE
Q 024590           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA---P------KSCYMRPPGGVLAPGDSIIATVFK  142 (265)
Q Consensus        77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTa---P------k~Y~VRPn~GiL~Pgesi~V~Vtl  142 (265)
                      |.|+|. .+.|..  + +...+++|+|.++.++.+.+....   .      ..|.|-|+.-.|+||++..|.|..
T Consensus         2 i~i~~t-rii~~~--~-~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~   72 (122)
T PF00345_consen    2 IQISPT-RIIFNE--S-QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR   72 (122)
T ss_dssp             EEESSS-EEEEET--T-SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE
T ss_pred             EEEccE-EEEEeC--C-CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe
Confidence            678885 777775  2 336899999999999999987654   1      268999999999999999999944

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

>PF14646 MYCBPAP: MYCBP-associated protein family

Probab=94.39  E-value=1.1  Score=43.82  Aligned_cols=119  Identities=18%  Similarity=0.275  Sum_probs=79.7

Q ss_pred             EEeeCCCceEeeCCCCCeeEEEEE-EEcCCCCeEEEEEeeC------------CCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           77 LRLDPSNNLYFPYEPGKQTRSAVR-LKNTSKSHVAFKFQTT------------APKSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        77 L~ldP~~eL~F~~e~~k~vss~Lt-LkN~S~~~VAFKVKTT------------aPk~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      ..+.+.-.|.|...++..+...|. |.|.+..-|-|..+--            ....|+.....|+|.||++..|.|+.+
T Consensus       231 ~~~~~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~  310 (426)
T PF14646_consen  231 PEVSISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFK  310 (426)
T ss_pred             CccCcceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEe
Confidence            445556689999999987777777 9999999999986532            256799999999999999999999996


Q ss_pred             ccCCCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCCCCChHHHHHHHhHHH
Q 024590          144 VEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAE  217 (265)
Q Consensus       144 ~e~P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~~pSp~~~~l~~~~~~  217 (265)
                      ...+         ...+....+...+         .+|.    ......+|..+-+++..-..-++.+++.|+.
T Consensus       311 s~~~---------Gif~E~W~L~t~P---------~l~~----~~~l~v~L~G~~~~~~~~~~~~~~~~~~l~~  362 (426)
T PF14646_consen  311 SRKV---------GIFKERWELRTFP---------PLFG----GASLTVRLHGVCTPPDEYLDKRKMLEEELAR  362 (426)
T ss_pred             CCCc---------eEEEEEEEEEEec---------cccC----CCceEEEEEEEEcCchHhHHHHHHHHHHHHH
Confidence            2211         2345555555422         2333    1124567777776654433344455544433

>PRK09918 putative fimbrial chaperone protein; Provisional

Probab=93.93  E-value=1.8  Score=39.16  Aligned_cols=108  Identities=16%  Similarity=0.162  Sum_probs=67.3

Q ss_pred             cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCC-----cceEeeCCeeeeCCCCeEEEEEEEeccCCCCc
Q 024590           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAP-----KSCYMRPPGGVLAPGDSIIATVFKFVEAPENN  150 (265)
Q Consensus        76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaP-----k~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~  150 (265)
                      -|.++|. .+.|...   +...+|+|+|.++.++.........     .-|.|.|+.-.|+||+...|.|.+....    
T Consensus        25 ~v~l~~t-Rvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~~l----   96 (230)
T PRK09918         25 GMVPETS-VVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKSGS----   96 (230)
T ss_pred             eEEEccE-EEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECCCC----
Confidence            4788885 7777643   3347999999999876665543211     3599999999999999999999875211    


Q ss_pred             CCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590          151 ERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE  202 (265)
Q Consensus       151 E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~  202 (265)
                         |.+..  --|-+....++...+.      +..=......++++-|.+..
T Consensus        97 ---p~drE--s~f~l~v~~IP~~~~~------~~~l~ia~r~~iklfyRP~~  137 (230)
T PRK09918         97 ---PLNTE--HLLRVSFEGVPPKPGG------KNKVVMPIRQDLPVLIQPAA  137 (230)
T ss_pred             ---CCCee--EEEEEEEEEcCCCCCC------CCEEEEEEEeEEEEEEeCCC
Confidence               22221  2345555555542221      11112223557788777654

>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini

Probab=91.19  E-value=0.85  Score=31.10  Aligned_cols=42  Identities=24%  Similarity=0.174  Sum_probs=35.2

Q ss_pred             EEEEcCCCCeE-EEEEeeCCCcceEeeCCeeeeCCCCeEEEEEE
Q 024590           99 VRLKNTSKSHV-AFKFQTTAPKSCYMRPPGGVLAPGDSIIATVF  141 (265)
Q Consensus        99 LtLkN~S~~~V-AFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vt  141 (265)
                      ++|+|+++.++ ..+|+|+ =+-..+......|.||++..|.|+
T Consensus         2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~   44 (45)
T PF07610_consen    2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVT   44 (45)
T ss_pred             EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEE
Confidence            68999999866 6677764 677888888899999999999886

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=90.49  E-value=1.5  Score=35.02  Aligned_cols=67  Identities=13%  Similarity=0.303  Sum_probs=39.3

Q ss_pred             EEeeCCCceEee-CCCCC-eeEEEEEEEcCCCCeEEEEEeeCCCcceEe-eCCeee-eCCCCeEEEEEEEe
Q 024590           77 LRLDPSNNLYFP-YEPGK-QTRSAVRLKNTSKSHVAFKFQTTAPKSCYM-RPPGGV-LAPGDSIIATVFKF  143 (265)
Q Consensus        77 L~ldP~~eL~F~-~e~~k-~vss~LtLkN~S~~~VAFKVKTTaPk~Y~V-RPn~Gi-L~Pgesi~V~Vtlq  143 (265)
                      |.+-+..-..|. -..|. .-..+|+|.|+++++.-|.|+...+..+.+ .|...+ |.||++..+.|++.
T Consensus        13 ~~V~rdr~~ly~~~~dg~I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~   83 (118)
T PF11614_consen   13 LNVLRDRGPLYRELSDGSIRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVT   83 (118)
T ss_dssp             EEEEE-SS---------SEEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEE
T ss_pred             EEEEecCCCcEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEE
Confidence            334443333333 33343 445999999999999999999888888888 675554 99999999998886

>PRK15249 fimbrial chaperone protein StbB; Provisional

Probab=89.46  E-value=9.4  Score=35.19  Aligned_cols=65  Identities=17%  Similarity=0.194  Sum_probs=48.1

Q ss_pred             CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCC------C-----cceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P-----KSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTa------P-----k~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      --|.|+|. .+.|+..   ....+|+|.|.++.++....-+..      |     .-|.|.|+.--|+||+...|.|...
T Consensus        28 A~l~l~~T-Rviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~  103 (253)
T PRK15249         28 ASVTILGS-RIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN  103 (253)
T ss_pred             eEEEeCce-EEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence            34889985 7777643   234799999999887555442211      1     1399999999999999999999874

>PRK11385 putativi pili assembly chaperone; Provisional

Probab=88.84  E-value=15  Score=33.74  Aligned_cols=111  Identities=17%  Similarity=0.275  Sum_probs=66.4

Q ss_pred             CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC------------CCcceEeeCCeeeeCCCCeEEEEEEE
Q 024590           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT------------APKSCYMRPPGGVLAPGDSIIATVFK  142 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTT------------aPk~Y~VRPn~GiL~Pgesi~V~Vtl  142 (265)
                      .-|.+++. .+.|+.  + ....+|+|.|.++.++.-.....            ...-|.|.|+.--|+||+...+.|..
T Consensus        26 A~v~l~~T-RvIy~~--~-~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~  101 (236)
T PRK11385         26 AGVVVGGT-RFIFPA--D-RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLR  101 (236)
T ss_pred             eeEEeCce-EEEEcC--C-CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEE
Confidence            45788885 777764  2 34479999999998644333211            11249999999999999999999988


Q ss_pred             eccCCCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590          143 FVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE  202 (265)
Q Consensus       143 q~e~P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~  202 (265)
                      ...    ... |.|  .---|-+-...+|+..+.      ...=......+|++-|.+..
T Consensus       102 ~~~----~~L-P~D--RESlf~lnv~~IPp~~~~------~n~L~iair~riKLFyRP~~  148 (236)
T PRK11385        102 TES----DIL-PVD--RETLFELSIASVPSGKVE------NQSVKVAMRSVFKLFWRPEG  148 (236)
T ss_pred             CCC----CCC-CCC--ceEEEEEEEEecCCCcCC------CceEEEEEEeeEEEEEcccc
Confidence            520    011 222  123444555555542211      11112334677888776644

>PRK09926 putative chaperone protein EcpD; Provisional

Probab=87.98  E-value=3.9  Score=37.44  Aligned_cols=65  Identities=12%  Similarity=0.193  Sum_probs=50.0

Q ss_pred             CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCc----------ceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK----------SCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk----------~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      --|.++|. .+.|+..   ....+|+|.|.++.++.-..-....+          -|.|.|+.--|+||+...|.|...
T Consensus        25 A~i~l~~T-RvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~   99 (246)
T PRK09926         25 ADIVISGT-RIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYT   99 (246)
T ss_pred             eeEEeCce-EEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeC
Confidence            45889995 7777752   33479999999998776655433211          399999999999999999999975

>PRK15299 fimbrial chaperone protein StiB; Provisional

Probab=87.37  E-value=16  Score=32.94  Aligned_cols=112  Identities=8%  Similarity=0.136  Sum_probs=66.9

Q ss_pred             CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCC--------CcceEeeCCeeeeCCCCeEEEEEEEeccC
Q 024590           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA--------PKSCYMRPPGGVLAPGDSIIATVFKFVEA  146 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTa--------Pk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~  146 (265)
                      .-|.++|. .+.|+..   .-..+|+|.|.++.++.-..-+..        ..-|.|.|+.--|+||+...|.|..... 
T Consensus        22 a~i~l~~T-Rvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-   96 (227)
T PRK15299         22 AGINIGTT-RVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-   96 (227)
T ss_pred             eeEEECce-EEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-
Confidence            34888885 7777643   234799999998876554432211        1239999999999999999999987421 


Q ss_pred             CCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590          147 PENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE  202 (265)
Q Consensus       147 P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~  202 (265)
                          .. |.+..  --|-+....+|+..+...    ...-......+|++.|-++.
T Consensus        97 ----~l-P~DrE--slf~lnv~eIP~~~~~~~----~n~l~iavr~riKLfyRP~~  141 (227)
T PRK15299         97 ----NL-PEDRE--SLYWLDIKSIPSSNPDNK----HNTLMLAVKAEFKLIYRPKA  141 (227)
T ss_pred             ----CC-CCcce--EEEEEEeEecCCCCcccc----cceEEEEEeeeeeEEEcccc
Confidence                01 32222  335555555554221100    00112334677888887654

>PRK15192 fimbrial chaperone BcfG; Provisional

Probab=85.76  E-value=25  Score=32.25  Aligned_cols=107  Identities=15%  Similarity=0.217  Sum_probs=65.3

Q ss_pred             cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC----------C----CcceEeeCCeeeeCCCCeEEEEEE
Q 024590           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT----------A----PKSCYMRPPGGVLAPGDSIIATVF  141 (265)
Q Consensus        76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTT----------a----Pk~Y~VRPn~GiL~Pgesi~V~Vt  141 (265)
                      -|.++.. .+.|+.  + ....+|+|.|.++.+  |=|++.          .    ..-|.|.|+.--|+||+...+.|.
T Consensus        23 gi~l~~T-RvIy~~--~-~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~   96 (234)
T PRK15192         23 GVVIGGT-RFIYHA--G-APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVV   96 (234)
T ss_pred             eEEeCce-EEEEcC--C-CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEE
Confidence            4677774 677764  2 234799999999986  555541          1    113999999999999999999998


Q ss_pred             EeccCCCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590          142 KFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE  202 (265)
Q Consensus       142 lq~e~P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~  202 (265)
                      .... .    . |.|  .---|-+....+|+..+.      ...=......+|++-|.+..
T Consensus        97 ~~~~-~----L-P~D--RESlf~lnv~~IPp~~~~------~n~l~iair~riKlFYRP~~  143 (234)
T PRK15192         97 YTGA-P----L-PAD--RESLFTLSIAAIPSGKPE------ANRVQMAFRSALKLLYRPEG  143 (234)
T ss_pred             ECCC-C----C-CCc--ceEEEEEEEEecCCCCCC------CcEEEEEEEeeeeEEEcccc
Confidence            8521 1    1 222  223455555555552210      11112234677777777654

>PRK15246 fimbrial assembly chaperone StbE; Provisional

Probab=85.67  E-value=28  Score=31.84  Aligned_cols=114  Identities=13%  Similarity=0.212  Sum_probs=66.7

Q ss_pred             cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCC------C----cceEeeCCeeeeCCCCeEEEEEEEecc
Q 024590           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P----KSCYMRPPGGVLAPGDSIIATVFKFVE  145 (265)
Q Consensus        76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTa------P----k~Y~VRPn~GiL~Pgesi~V~Vtlq~e  145 (265)
                      -|.|++. .+.|+..   ....+|+|.|.++.++.-..-...      |    .-|.|.|+.--|+||+...|.|.....
T Consensus        11 ~v~l~~T-RvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~   86 (233)
T PRK15246         11 AVNIDRT-RIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSR   86 (233)
T ss_pred             EEEECce-EEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCC
Confidence            4778884 7777742   334799999999886443331111      1    149999999999999999999997421


Q ss_pred             CCCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590          146 APENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE  202 (265)
Q Consensus       146 ~P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~  202 (265)
                      .    .. |.|.  ---|-+....+++..+...+  .+..=......+|++-|.+..
T Consensus        87 ~----~L-P~DR--ESlf~lnv~~IP~~~~~~~~--~~~~l~iair~rIKlFyRP~~  134 (233)
T PRK15246         87 Q----QL-ATDR--ESLFWLNIYQIPPVTQDIKN--HPRKLVLPLRLRLKILIRPTG  134 (233)
T ss_pred             C----CC-CCCc--eEEEEEEEEEcCCCCccccc--ccceEEEEeeeEEEEEECCcc
Confidence            0    11 2221  12355555555553221000  000112234677888887754

>PRK15211 fimbrial chaperone protein PefD; Provisional

Probab=85.36  E-value=14  Score=33.70  Aligned_cols=65  Identities=12%  Similarity=0.152  Sum_probs=47.2

Q ss_pred             CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC------CCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT------APKSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTT------aPk~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      .-|.+++. .+.|+.  + .-..+|+|+|.++.++.-.....      ...-|.|.|+.--|+||+...|.|...
T Consensus        22 A~v~l~~T-RvIy~~--~-~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~   92 (229)
T PRK15211         22 AAFVLNGT-RFIYDE--G-RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKT   92 (229)
T ss_pred             EEEEECce-EEEEcC--C-CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEEC
Confidence            34788884 677764  2 23489999999988744333221      112499999999999999999999885

>PRK15295 fimbrial assembly chaperone SthB; Provisional

Probab=84.93  E-value=7.5  Score=35.24  Aligned_cols=63  Identities=16%  Similarity=0.222  Sum_probs=46.8

Q ss_pred             CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEee--C--C-----CcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT--T--A-----PKSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKT--T--a-----Pk~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      --|.+++. .+.|+..   ....+|+|.|.++.++.  |++  .  .     ..-|.|.|+.--|+||+...|.|...
T Consensus        19 A~i~l~~T-RvI~~~~---~~~~si~i~N~~~~p~L--vQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~   90 (226)
T PRK15295         19 ASIVVGGT-RLVFDGN---NDESSINVENKDSKANL--VQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRS   90 (226)
T ss_pred             ccEEeCce-EEEEeCC---CceeEEEEEeCCCCcEE--EEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEEC
Confidence            34788885 7777652   23479999999988643  443  1  1     12499999999999999999999874

>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=83.57  E-value=35  Score=31.07  Aligned_cols=111  Identities=14%  Similarity=0.225  Sum_probs=72.6

Q ss_pred             CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC-------CCcceEeeCCeeeeCCCCeEEEEEEEeccCC
Q 024590           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT-------APKSCYMRPPGGVLAPGDSIIATVFKFVEAP  147 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTT-------aPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P  147 (265)
                      --+.+++. .+.|+..   ....+|+|.|.++.++.-.+-.-       ...-|.|.|+.-.|+||+...|.|..... +
T Consensus        27 A~v~i~~T-RiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~  101 (235)
T COG3121          27 AGVVLGGT-RIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-K  101 (235)
T ss_pred             eeEEecce-EEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-C
Confidence            34777875 6677643   23479999998888988885543       24459999999999999999999998631 1


Q ss_pred             CCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCC---CcceEEEEEEEEecCCC
Q 024590          148 ENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKD---QVTVERILRVVFLNAER  203 (265)
Q Consensus       148 ~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~---~~i~e~kLrV~fv~p~~  203 (265)
                          . |.|  ...-|-+.-..+|....      +....   ......+|++-|.++.-
T Consensus       102 ----l-P~d--rEslf~lnv~eIPp~~~------~~~~~n~lq~a~r~riKlf~RP~~l  147 (235)
T COG3121         102 ----L-PAD--RESLFRLNVDEIPPKSK------DDKGPNVLQLALRSRIKLFYRPAGL  147 (235)
T ss_pred             ----C-CCC--ceeEEEEEeeecCCCCc------ccCCcceEEEEeeeeeeEEECcccC
Confidence                1 332  22455555555655321      11111   33457888888887653

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.39  E-value=4.6  Score=31.99  Aligned_cols=52  Identities=17%  Similarity=0.225  Sum_probs=33.0

Q ss_pred             CCeeEEEEEEEcCCCCeEEEEEeeC-----C---CcceEe-e------------CCeeeeCCCCeEEEEEEEe
Q 024590           92 GKQTRSAVRLKNTSKSHVAFKFQTT-----A---PKSCYM-R------------PPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        92 ~k~vss~LtLkN~S~~~VAFKVKTT-----a---Pk~Y~V-R------------Pn~GiL~Pgesi~V~Vtlq  143 (265)
                      +...+..|+|+|.+++.+-|+|.-.     .   .+.|.. .            |..=.|+||++..|.|++.
T Consensus         7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~   79 (112)
T PF06280_consen    7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTIT   79 (112)
T ss_dssp             -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE
T ss_pred             CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEE
Confidence            3446789999999999999997644     1   122221 1            2222489999999999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

>PRK15208 long polar fimbrial chaperone LpfB; Provisional

Probab=80.48  E-value=15  Score=33.30  Aligned_cols=65  Identities=12%  Similarity=0.239  Sum_probs=46.2

Q ss_pred             CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-e-EEEEEeeC-CC---cceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-H-VAFKFQTT-AP---KSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~-~-VAFKVKTT-aP---k~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      .-|.++|. .+.|+..   ....+|+|+|.+++ + +.+..-.. ..   .-|.|.|+.--|+||+...|.|...
T Consensus        21 agv~l~~T-RvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~   91 (228)
T PRK15208         21 GGVALSST-RVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNI   91 (228)
T ss_pred             ccEEeCce-EEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEEC
Confidence            34888885 7777753   23479999999864 3 33332212 11   1299999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	265
1z9o_A	128	1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp		2e-05
2cri_A	147	Solution Structure Of The Msp Domain Of Mouse Vamp-		3e-05
2rr3_A	130	Solution Structure Of The Complex Between Human Vap		3e-05
1z9l_A	128	1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp		6e-05
3ikk_A	127	Crystal Structure Analysis Of Msp Domain Length = 1		2e-04

>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 97  SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156
           + ++L+N S   V FK +TTAP+   +RP  GV+ PG  +  +V            QP D
Sbjct: 31  TNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM----------LQPFD 80
Query: 157 ----QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVF 198
               +KSK KF + ++     I  +  ++ E K    ++  LR VF
Sbjct: 81  YDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVF 126

>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 97  SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156
           + ++L+N S   V FK +TTAP+   +RP  G++ PG  +  +V            QP D
Sbjct: 35  TNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM----------LQPFD 84
Query: 157 ----QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVF 198
               +KSK KF + ++     I  +  ++ E K    ++  LR VF
Sbjct: 85  YDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVF 130

>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 97  SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156
           + ++L+N S   V FK +TTAP+   +RP  G++ PG ++  +V            QP D
Sbjct: 30  TNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM----------LQPFD 79
Query: 157 ----QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVF 198
               +KSK KF + ++        +  ++ E K    ++  LR VF
Sbjct: 80  YDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRCVF 125

>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 97  SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156
           + ++L+N S   V FK +TTAP+   +RP  GV+ PG  +  +V            QP D
Sbjct: 31  TNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSV----------XLQPFD 80
Query: 157 ----QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVF 198
               +KSK KF + ++     I     ++ E K     +  LR VF
Sbjct: 81  YDPNEKSKHKFXVQTIFAPPNISDXEAVWKEAKPDELXDSKLRCVF 126

>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 97  SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156
           + ++L N +  +V FK +TTAP+   +RP  G++  G SI  +V            QP D
Sbjct: 30  TNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVM----------LQPFD 79
Query: 157 ----QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVF 198
               +KSK KF + S+        +  ++ E K +  ++  LR VF
Sbjct: 80  YDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVF 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
2cri_A	147	Vesicle-associated membrane protein-associated pro	4e-34
1z9l_A	128	Vesicle-associated membrane protein-associated pro	5e-32
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	9e-29
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	1e-21
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	7e-14
1row_A	109	SSP-19, MSP-domain protein like family member; bet	6e-11
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	1e-05
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	5e-04

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147

 Score =  119 bits (300), Expect = 4e-34
 Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 6/149 (4%)

Query: 64  SYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM 123
           S  +  +    + L LDP ++L F         + ++L+N S   V FK +TTAP+   +
Sbjct: 2   SSGSSGMAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCV 61

Query: 124 RPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDE 183
           RP  G++ PG  +       V           ++KSK KF + ++     I  +  ++ E
Sbjct: 62  RPNSGIIDPGSIVT------VSVMLQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKE 115

Query: 184 QKDQVTVERILRVVFLNAERPSPALEKLK 212
            K    ++  LR VF          +   
Sbjct: 116 AKPDELMDSKLRCVFEMPNENDKLNDSGP 144

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128

 Score =  113 bits (284), Expect = 5e-32
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 72  PPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLA 131
              + L LDP ++L F         + ++L+N S   V FK +TTAP+   +RP  GV+ 
Sbjct: 6   KHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVID 65

Query: 132 PGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVE 191
           PG  +       V           ++KSK KF + ++     I  +  ++ E K    ++
Sbjct: 66  PGSIVT------VSVMLQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMD 119

Query: 192 RILRVVF 198
             LR VF
Sbjct: 120 SKLRCVF 126

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152

 Score =  105 bits (264), Expect = 9e-29
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 13/134 (9%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L + P+  LYF      + ++ + L N +K+ VAFK +TTAP+   ++P      PG SI
Sbjct: 19  LHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 78

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVP----ELFDEQKDQVTVER 192
              V              L   ++D+F IM+ +++      P    + + E      +E 
Sbjct: 79  DIIVSPH---------GGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEH 129

Query: 193 ILRVVFLNAERPSP 206
            LR   + + +P+ 
Sbjct: 130 RLRCHTVESSKPNS 143

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126

 Score = 86.9 bits (215), Expect = 1e-21
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 10/128 (7%)

Query: 73  PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
           P   +   PS  + F      +    +++ N     + +  +TT  +   + PP GVL P
Sbjct: 5   PPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDP 64

Query: 133 GDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI--DYVPELFDEQKDQVTV 190
            + ++  V          +       + D+  I       G    +  E F  Q D +  
Sbjct: 65  KEKVLMAVSCDTFNAATED------LNNDRITIEWTNTPDGAAKQFRREWF--QGDGMVR 116

Query: 191 ERILRVVF 198
            + L + +
Sbjct: 117 RKNLPIEY 124

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116

 Score = 65.3 bits (159), Expect = 7e-14
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 15/111 (13%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           + +DP     +P   G  T     + + S S +AFK +++  +   +RP  G +      
Sbjct: 11  INVDPPT-GNYPATGGNST---HNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 66

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQ 187
              +           R P   K +DK  I   +V          F     Q
Sbjct: 67  KLDIN----------RLPGPPK-EDKIVIQYAEVPAEETDPMAPFKAGAQQ 106

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109

 Score = 57.2 bits (138), Expect = 6e-11
 Identities = 19/121 (15%), Positives = 30/121 (24%), Gaps = 15/121 (12%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L  DP      P      T    +L N     + FK +++      + P  G + P  S 
Sbjct: 3   LTADPPA-CTVPAAGVSST---HKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 58

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRV 196
              +           R       +DK  +               F       TV   +  
Sbjct: 59  DVVIT----------RTA-GAPKEDKLVVHFASAPADATDAQAAFVAVAPAGTVTIPMSA 107

Query: 197 V 197
            
Sbjct: 108 T 108

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 122

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 76  RLRLDPSNNLYFPYEPGKQTRSA-VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGD 134
           R  LD  + L F   P K +    + ++N    +  F  +T  P    + P  G L  G+
Sbjct: 23  RAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRP--FSIEPAIGTLNVGE 80

Query: 135 SIIATV 140
           S+   V
Sbjct: 81  SMQLEV 86

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Length = 140

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 93  KQTRSAVRLKNTSKSHVAFKF------QTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
            Q     ++ N  +    F F                 P  G L P +++  ++  +V  
Sbjct: 44  LQKEK-FQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSK 102

Query: 147 PENNERQPLDQKSKDKFKIMSLKVKGGIDY 176
                    + K +D   I+ L +  G DY
Sbjct: 103 DSVTILNSGEDKIED---ILVLHLDRGKDY 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
2cri_A	147	Vesicle-associated membrane protein-associated pro	100.0
1z9l_A	128	Vesicle-associated membrane protein-associated pro	100.0
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	100.0
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	99.97
1row_A	109	SSP-19, MSP-domain protein like family member; bet	99.95
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	99.94
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	98.15
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	97.85
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	97.79
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	97.25
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	96.13
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	94.83
3q48_A	257	Chaperone CUPB2; IG fold, periplasmic chaperone; 2	91.45
2xg5_A	218	PAPD, chaperone protein PAPD; chaperone, chaperone	86.07
2co7_B	221	SAFB chaperone, putative fimbriae assembly chapero	85.68
1klf_A	205	FIMC chaperone, chaperone protein FIMC; adhesin-ch	81.82
1l4i_A	206	SFAE protein; periplasmic chaperone, immunoglobuli	81.49
4djm_A	239	DRAB; chaperone, PILI; 2.52A {Escherichia coli}	81.23

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=100.00  E-value=1.9e-34  Score=241.46  Aligned_cols=125  Identities=28%  Similarity=0.443  Sum_probs=113.5

Q ss_pred             CCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCC
Q 024590           73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER  152 (265)
Q Consensus        73 ~~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~  152 (265)
                      ++++|.|+|.++|.|++++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|.||+++.|.|+++   |+..  
T Consensus        11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~---~~~~--   85 (147)
T 2cri_A           11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQ---PFDY--   85 (147)
T ss_dssp             CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEEC---CCCC--
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEEC---CCcC--
Confidence            45789999988999999999999999999999999999999999999999999999999999999999996   4322  


Q ss_pred             CCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCCC
Q 024590          153 QPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAER  203 (265)
Q Consensus       153 pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~~  203 (265)
                       .++.+|+|||+||++.++++.+++.++|++..+..++++||||+|+.|..
T Consensus        86 -~p~~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~p~~  135 (147)
T 2cri_A           86 -DPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNE  135 (147)
T ss_dssp             -CTTCCSCCCEEEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEEEECSCC
T ss_pred             -CccccCCCEEEEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEEEecCCC
Confidence             23578999999999999988777899999998888999999999987654

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A

Probab=100.00  E-value=9.7e-34  Score=231.33  Aligned_cols=121  Identities=30%  Similarity=0.460  Sum_probs=110.5

Q ss_pred             CCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCC
Q 024590           73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER  152 (265)
Q Consensus        73 ~~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~  152 (265)
                      ++++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|.||+++.|.|+++   |+..  
T Consensus         7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~---~~~~--   81 (128)
T 1z9l_A            7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQ---PFDY--   81 (128)
T ss_dssp             CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEEC---CCCC--
T ss_pred             CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEEC---cCcC--
Confidence            45789999988999999999999999999999999999999999999999999999999999999999996   4322  


Q ss_pred             CCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEe
Q 024590          153 QPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFL  199 (265)
Q Consensus       153 pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv  199 (265)
                       .++.+|+|||+||++.++++.+++.++|++.++..++++||||+|.
T Consensus        82 -~p~~~~~dkF~V~s~~~~~~~~~~~~~w~~~~~~~i~e~kLrv~f~  127 (128)
T 1z9l_A           82 -DPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFE  127 (128)
T ss_dssp             -CTTCCCCCEEEEEEEECCTTCSCHHHHHHSCCGGGCEEEEEEEEEE
T ss_pred             -CcccccCCEEEEEEEECCCCcchHHHHhhcCCCCceEEEEEEEEEe
Confidence             2346899999999999999877789999999888899999999995

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2

Probab=100.00  E-value=1.4e-33  Score=238.05  Aligned_cols=127  Identities=26%  Similarity=0.385  Sum_probs=112.1

Q ss_pred             CCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCC
Q 024590           73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER  152 (265)
Q Consensus        73 ~~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~  152 (265)
                      .+++|.|+|.++|.|.+++++++++.|+|+|+++++||||||||+|++|+|||+.|+|.||+++.|.|+|+   ++ .  
T Consensus        15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq---~~-~--   88 (152)
T 1wic_A           15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPH---GG-L--   88 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEEC---SS-S--
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEec---Cc-c--
Confidence            45789999988999999999999999999999999999999999999999999999999999999999996   42 1  


Q ss_pred             CCCCCCCCCeEEEEEEEeC--CCC--CChhhhhhccCCCcceEEEEEEEEecCC-CCChHH
Q 024590          153 QPLDQKSKDKFKIMSLKVK--GGI--DYVPELFDEQKDQVTVERILRVVFLNAE-RPSPAL  208 (265)
Q Consensus       153 pp~~~~~kDKFLVqS~~v~--~~~--d~~~elFk~~~~~~i~e~kLrV~fv~p~-~pSp~~  208 (265)
                         +..++|||+||++.++  ++.  +++.++|++..+..++++||||+|+++. |+|+++
T Consensus        89 ---~~~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~  146 (152)
T 1wic_A           89 ---TVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLML  146 (152)
T ss_dssp             ---CCCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCC
T ss_pred             ---cCCCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEEECCCCCCCCccc
Confidence               1378999999999998  443  4678999999888899999999999765 555554

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A

Probab=99.97  E-value=2.6e-30  Score=211.68  Aligned_cols=118  Identities=17%  Similarity=0.290  Sum_probs=100.6

Q ss_pred             CCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCC
Q 024590           74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQ  153 (265)
Q Consensus        74 ~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~p  153 (265)
                      ...|.++|.++|.|++++++++++.|+|+|+|+++||||||||+|++|+|||++|+|.||+++.|.|+|+   ++...  
T Consensus         6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q---~~~~~--   80 (126)
T 1msp_A            6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCD---TFNAA--   80 (126)
T ss_dssp             CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEEC---CCCGG--
T ss_pred             CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEec---CCCCC--
Confidence            3469999999999999999999999999999999999999999999999999999999999999999997   33322  


Q ss_pred             CCCCCCCCeEEEEEEEeCCCC--CChhhhhhccCCCcceEEEEEEEEe
Q 024590          154 PLDQKSKDKFKIMSLKVKGGI--DYVPELFDEQKDQVTVERILRVVFL  199 (265)
Q Consensus       154 p~~~~~kDKFLVqS~~v~~~~--d~~~elFk~~~~~~i~e~kLrV~fv  199 (265)
                      |. ...+|||+|||+.++++.  |+..+||. .++ .+..++|+|.|-
T Consensus        81 ~~-~~~kDKf~Vq~~~~p~~~~~~~~~~wf~-~d~-~~~~k~L~V~Yn  125 (126)
T 1msp_A           81 TE-DLNNDRITIEWTNTPDGAAKQFRREWFQ-GDG-MVRRKNLPIEYN  125 (126)
T ss_dssp             GS-CCSSCEEEEEEEECCTTCCSSCCTHHHH-SSS-CCEEEEEEEEEE
T ss_pred             CC-ccCCCEEEEEEEECCCCcchhhhHHhhc-CCC-ceEEEEEEEEec
Confidence            22 245999999999999885  45555554 333 478999999985

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.95  E-value=3.2e-27  Score=189.81  Aligned_cols=104  Identities=15%  Similarity=0.176  Sum_probs=91.0

Q ss_pred             EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCCCCC
Q 024590           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD  156 (265)
Q Consensus        77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~~  156 (265)
                      |.|+|. +|.|.++.+   ++.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|+++   |+        
T Consensus         3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q---~~--------   67 (109)
T 1row_A            3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRT---AG--------   67 (109)
T ss_dssp             CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEEC---SC--------
T ss_pred             EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeC---CC--------
Confidence            899996 699998743   699999999999999999999999999999999999999999999996   32        


Q ss_pred             CCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEE
Q 024590          157 QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVV  197 (265)
Q Consensus       157 ~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~  197 (265)
                      ..++|||+||++.++++..+..++|++...  ..+.+|++.
T Consensus        68 ~~~~dKflvq~~~~~~~~~d~~~~fk~~~~--~g~~~i~l~  106 (109)
T 1row_A           68 APKEDKLVVHFASAPADATDAQAAFVAVAP--AGTVTIPMS  106 (109)
T ss_dssp             CCEEEEEEEEEEECCTTCSCHHHHHTTCCC--CEEEEEEEE
T ss_pred             CCCCCEEEEEEEECCCCCCCHHHHhhcCCC--CceEEEEEE
Confidence            247999999999999887778999998655  356677664

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.94  E-value=3e-26  Score=186.36  Aligned_cols=105  Identities=21%  Similarity=0.321  Sum_probs=92.3

Q ss_pred             cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCCCC
Q 024590           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPL  155 (265)
Q Consensus        76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~  155 (265)
                      ++.++|. +|.|+++.|   ++.|+|+|+++.+||||||||+|++|||||++|+|+||++++|.|+++   |+     + 
T Consensus        10 ~~~~~p~-~l~F~~~gg---~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q---~~-----~-   76 (116)
T 1m1s_A           10 MINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRL---PG-----P-   76 (116)
T ss_dssp             SEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEEC---SC-----C-
T ss_pred             eeecCCC-eEEEecCCC---EEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeC---CC-----C-
Confidence            4889995 999998743   799999999999999999999999999999999999999999999996   42     1 


Q ss_pred             CCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEE
Q 024590          156 DQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVV  197 (265)
Q Consensus       156 ~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~  197 (265)
                        .++|||+||++.++++..+..++|++..+  ..+.+|++.
T Consensus        77 --~k~DKflVq~~~~~~d~~d~~~~fk~~~~--~g~~~i~l~  114 (116)
T 1m1s_A           77 --PKEDKIVIQYAEVPAEETDPMAPFKAGAQ--QGEIIVKLI  114 (116)
T ss_dssp             --SCEEEEEEEEEEECTTCCCTTHHHHTTCC--CEEEEEEEE
T ss_pred             --CCCCEEEEEEEECCCCCCCHHHHHhcCCC--CceEEEEEE
Confidence              47899999999999877678999998655  477888764

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.15  E-value=1.3e-05  Score=63.57  Aligned_cols=65  Identities=22%  Similarity=0.278  Sum_probs=55.1

Q ss_pred             CcEEeeCCCceEeeCC-CCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           75 RRLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~e-~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      ..|.+ | +.|.|..- .+...+..|.|+|+++.++.|++++.+  -|.|.|+.|.|.||+++.|.|+..
T Consensus        24 ~~l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~~--~F~i~P~~g~L~pg~~~~i~V~F~   89 (122)
T 2ys4_A           24 AILDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCR--PFSIEPAIGTLNVGESMQLEVEFE   89 (122)
T ss_dssp             CCCCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECCT--TEEEESSEEEECTTCEEEEEEEEC
T ss_pred             cEECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecCC--CeEEECCcCEECCCCEEEEEEEEE
Confidence            34555 5 58888663 466778999999999999999999854  699999999999999999999995

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.85  E-value=5.5e-05  Score=58.28  Aligned_cols=68  Identities=12%  Similarity=0.146  Sum_probs=56.9

Q ss_pred             CcEEeeCCCceEeeCC-CCCeeEEEEEEEcCCCCeEEEEEeeCC-C--cceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           75 RRLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTA-P--KSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~e-~~k~vss~LtLkN~S~~~VAFKVKTTa-P--k~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      ..+.+++. .|.|-.- .+...+..++|+|+++-++-|++.... .  ..|.+.|+.|.|.||++..|.|++.
T Consensus         8 P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~   79 (112)
T 2e6j_A            8 PKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFS   79 (112)
T ss_dssp             CSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEEC
T ss_pred             CEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEE
Confidence            45888884 7888653 577788999999999999999996422 1  5699999999999999999999995

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=97.79  E-value=0.00013  Score=60.02  Aligned_cols=69  Identities=16%  Similarity=0.264  Sum_probs=58.0

Q ss_pred             CcEEeeCCCceEeeC-CCCCeeEEEEEEEcCCCCeEEEEEeeC------CCcceEeeCCeeeeCCCCeEEEEEEEec
Q 024590           75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTT------APKSCYMRPPGGVLAPGDSIIATVFKFV  144 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~-e~~k~vss~LtLkN~S~~~VAFKVKTT------aPk~Y~VRPn~GiL~Pgesi~V~Vtlq~  144 (265)
                      ..+.+++ ..|.|-. .++...+.+|+|+|++.-+.-|++.-.      .+.-+.|.|..|.|.||+++.|.|++..
T Consensus        25 P~i~v~~-~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v  100 (140)
T 3qbt_B           25 PSLELSR-REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV  100 (140)
T ss_dssp             CCEEESC-CEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred             CceEeee-eeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence            4577888 5999874 467788999999999999999999853      2345889999999999999999999863

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=97.25  E-value=0.0012  Score=61.99  Aligned_cols=69  Identities=16%  Similarity=0.276  Sum_probs=57.7

Q ss_pred             CcEEeeCCCceEeeC-CCCCeeEEEEEEEcCCCCeEEEEEeeCCCc-c-----eEeeCCeeeeCCCCeEEEEEEEec
Q 024590           75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTTAPK-S-----CYMRPPGGVLAPGDSIIATVFKFV  144 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~-e~~k~vss~LtLkN~S~~~VAFKVKTTaPk-~-----Y~VRPn~GiL~Pgesi~V~Vtlq~  144 (265)
                      ..+.|++ ..|.|-. .++...+.+|+|+|++.-++.|+|.....+ .     +.|.|..|.|.||+++.|.|++..
T Consensus        28 P~v~v~~-~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v  103 (366)
T 3qis_A           28 PSLELSR-REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV  103 (366)
T ss_dssp             CCEEESC-SEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred             CeEEEec-CeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence            5578888 4999954 578889999999999999999999854222 2     669999999999999999999964

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=96.13  E-value=0.023  Score=49.12  Aligned_cols=65  Identities=15%  Similarity=0.179  Sum_probs=55.9

Q ss_pred             EEeeCCCceEeeCC-CCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           77 LRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        77 L~ldP~~eL~F~~e-~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      |++++ +.+.|..- .|......++++|+++.++-++.-.. |..+.+++..+.|+||++..|.|++.
T Consensus         3 i~~~~-~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~   68 (220)
T 2qsv_A            3 LQVSN-ARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLA   68 (220)
T ss_dssp             EEESC-SEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEEC
T ss_pred             eEEec-CeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEc
Confidence            88999 59998763 46666789999999999999987644 88888899999999999999999995

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=94.83  E-value=0.12  Score=44.63  Aligned_cols=66  Identities=17%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEE-EEeeCCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAF-KFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAF-KVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      ..|.++  ..+.|-.-.|...+..++|+|+++.++.+ +|+|+. +...+.++.+.|.||++..|.|++.
T Consensus       118 ~~i~~~--~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~  184 (220)
T 2qsv_A          118 GVMELS--TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVD  184 (220)
T ss_dssp             CCEECC--CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEEC
T ss_pred             CEEEEE--eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEe
Confidence            458888  48888643377888999999999999887 888764 7889999999999999999999995

>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}

Probab=91.45  E-value=3.9  Score=36.45  Aligned_cols=110  Identities=17%  Similarity=0.245  Sum_probs=66.7

Q ss_pred             cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCC------C----cceEeeCCeeeeCCCCeEEEEEEEecc
Q 024590           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P----KSCYMRPPGGVLAPGDSIIATVFKFVE  145 (265)
Q Consensus        76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTa------P----k~Y~VRPn~GiL~Pgesi~V~Vtlq~e  145 (265)
                      -|.|+|. .+.|+..   +-..+|+|+|.++.++.-.+-..+      |    .-|.|.|+.-.|+||+...|.|.....
T Consensus        29 ~v~i~~T-RvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~  104 (257)
T 3q48_A           29 GLIAQGT-RVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA  104 (257)
T ss_dssp             --CCSCS-EEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC
T ss_pred             eEEEcce-EEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC
Confidence            4778885 7777753   224799999999987665543221      1    139999999999999999999987421


Q ss_pred             CCCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590          146 APENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE  202 (265)
Q Consensus       146 ~P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~  202 (265)
                       +    . |.|..  --|-+.-..+|...+.     +...=......+|++-|.+..
T Consensus       105 -~----L-P~DrE--Slf~lnv~eIPp~~~~-----~~n~Lqiair~rIKLFyRP~~  148 (257)
T 3q48_A          105 -P----L-PTDRE--SLFWLNILEVPPRDED-----ENNALQFSFRSRFKLFFRPSQ  148 (257)
T ss_dssp             -C----C-CSSSC--EEEEEEEEEECCC--------------CCEEEEEEEEEECTT
T ss_pred             -C----C-CCCce--eEEEEEeeecCCCCCC-----CCceEEEEEEEEEEEEEeccc
Confidence             1    1 33322  3455555555553221     111123345788999888754

>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A

Probab=86.07  E-value=16  Score=31.53  Aligned_cols=109  Identities=14%  Similarity=0.179  Sum_probs=66.0

Q ss_pred             EEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEEeeCC-------CcceEeeCCeeeeCCCCeEEEEEEEeccCCC
Q 024590           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTTA-------PKSCYMRPPGGVLAPGDSIIATVFKFVEAPE  148 (265)
Q Consensus        77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~-~VAFKVKTTa-------Pk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~  148 (265)
                      |.+++. .+.|+...   -..+|+|+|.++. ++.-.+-...       ..-|.|.|+.--|+||+...|.|.....   
T Consensus         2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~---   74 (218)
T 2xg5_A            2 VSLDRT-RAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPD---   74 (218)
T ss_dssp             EEESCS-EEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGG---
T ss_pred             cEeCce-EEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCC---
Confidence            567774 77777542   3479999999988 7665543321       2249999999999999999999988520   


Q ss_pred             CcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecC
Q 024590          149 NNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNA  201 (265)
Q Consensus       149 ~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p  201 (265)
                      .... |.|..  --|-+.-..+|+..+.     +. .=......+|++-|.+.
T Consensus        75 ~~~l-P~DrE--Slf~lnv~eIPp~~~~-----~n-~lqia~r~rIKlFyRP~  118 (218)
T 2xg5_A           75 ISKL-PQDRE--SLFYFNLREIPPRSEK-----AN-VLQIALQTKIKLFYRPA  118 (218)
T ss_dssp             GGGS-CSSSC--EEEEEEEEEECCCCCC-----TT-EEEEEEEEEEEEEEECG
T ss_pred             CCCC-CCCce--EEEEEEeecCCCCCCC-----Cc-eEEEEehheeeEEEcCc
Confidence            0011 33322  3444444555542211     00 11223467788877664

>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B

Probab=85.68  E-value=5  Score=34.82  Aligned_cols=112  Identities=9%  Similarity=0.120  Sum_probs=67.0

Q ss_pred             EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC-----CCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcC
Q 024590           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNE  151 (265)
Q Consensus        77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTT-----aPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E  151 (265)
                      |.+++. .+.|+...   -..+|+|+|.++.++.-.+-..     ...-|.|.|+.-.|+||+...|.|..... +    
T Consensus        14 v~i~~T-RvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~----   84 (221)
T 2co7_B           14 VKLGAT-RVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-D----   84 (221)
T ss_dssp             CEESCS-EEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-C----
T ss_pred             EEEcce-EEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-C----
Confidence            678885 77777543   2379999999988765554321     12349999999999999999999988521 1    


Q ss_pred             CCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccC----CCcceEEEEEEEEecCC
Q 024590          152 RQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQK----DQVTVERILRVVFLNAE  202 (265)
Q Consensus       152 ~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~----~~~i~e~kLrV~fv~p~  202 (265)
                      . |.+..  --|-+.-..+|+..+...+  +...    =......+|++-|.+..
T Consensus        85 l-P~DrE--slf~lnv~eIPp~~~~~~~--~~~n~~~~lqia~r~rIKlFyRP~~  134 (221)
T 2co7_B           85 M-PTDRE--TLQWVCIKAVPPENEPSDT--QAKGATLDLNLSINACDKLIFRPDA  134 (221)
T ss_dssp             C-CSSSC--EEEEEEEEEECCC-------------CEEEEEEEEEEEEEEEECTT
T ss_pred             C-CCCce--EEEEEEeecCCCCcccccc--cccCcceeEEEEeeeeeeEEEeccc
Confidence            1 33322  3455555555542211000  0000    11234678888887765

>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C

Probab=81.82  E-value=24  Score=30.16  Aligned_cols=111  Identities=10%  Similarity=0.114  Sum_probs=67.2

Q ss_pred             EEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEEeeC-----CCcceEeeCCeeeeCCCCeEEEEEEE-eccCCCC
Q 024590           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATVFK-FVEAPEN  149 (265)
Q Consensus        77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~-~VAFKVKTT-----aPk~Y~VRPn~GiL~Pgesi~V~Vtl-q~e~P~~  149 (265)
                      |.+++. .+.|+...   -..+|+|+|.++. ++.-.+-..     ...-|.|.|+.--|+||+...|.|.. .. .+  
T Consensus         2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~--   74 (205)
T 1klf_A            2 VALGAT-RVIYPAGQ---KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATN-NQ--   74 (205)
T ss_dssp             EEESCS-EEEEETTC---SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSC-SC--
T ss_pred             eEecce-EEEEeCCC---cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CC--
Confidence            567774 77777542   3479999999987 765554321     12349999999999999999999987 52 11  


Q ss_pred             cCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590          150 NERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE  202 (265)
Q Consensus       150 ~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~  202 (265)
                        . |.|..  .-|-+.-..+++..+...   ....=......+|++-|.+..
T Consensus        75 --l-P~DrE--slf~lnv~eIPp~~~~~~---~~n~lqia~r~riKlFyRP~~  119 (205)
T 1klf_A           75 --L-PQDRE--SLFWMNVKAIPSMDKSKL---TENTLQLAIISRIKLYYRPAK  119 (205)
T ss_dssp             --S-CSSSC--EEEEEEEEEECCCCTTST---TSCEEEEEEEEEEEEEEECTT
T ss_pred             --C-CCCce--EEEEEEeEecCCCCcccc---CCceEEEEeeeeeeEEEcccc
Confidence              1 33322  345555555554221100   000011234678888887755

>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1

Probab=81.49  E-value=24  Score=30.07  Aligned_cols=111  Identities=11%  Similarity=0.108  Sum_probs=66.0

Q ss_pred             EEeeCCCceEeeCCCCCeeEEEEEEEcCCC-CeEEEEEeeC-----CCcceEeeCCeeeeCCCCeEEEEEE-EeccCCCC
Q 024590           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSK-SHVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATVF-KFVEAPEN  149 (265)
Q Consensus        77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~-~~VAFKVKTT-----aPk~Y~VRPn~GiL~Pgesi~V~Vt-lq~e~P~~  149 (265)
                      |.+++. .+.|+...   -..+|+|+|.++ .++.-.+-..     ...-|.|.|+.--|+||+...|.|. ... .+  
T Consensus         2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~--   74 (206)
T 1l4i_A            2 VALGAT-RVIYPEGQ---KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQ--   74 (206)
T ss_dssp             EEESCS-EEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TC--
T ss_pred             eEeCce-EEEEeCCC---cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CC--
Confidence            567774 77777532   347999999986 6765554321     1234999999999999999999998 631 11  


Q ss_pred             cCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590          150 NERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE  202 (265)
Q Consensus       150 ~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~  202 (265)
                        . |.|...  -|-+.-..+++..+...   ....=......+|++-|.+..
T Consensus        75 --l-P~DrEs--lf~lnv~eIPp~~~~~~---~~n~lqia~r~riKlFyRP~~  119 (206)
T 1l4i_A           75 --M-PEDRES--LFWVNVKAIPAMDKAKT---GENYLQFAIVSRIKLLYRPQG  119 (206)
T ss_dssp             --S-CSSSCE--EEEEEEEEEECCC-----------CCCEEEEEEEEEEECTT
T ss_pred             --C-CCCceE--EEEEEeecCCCCccccc---CCceEEEEhhheeeEEEeccc
Confidence              1 333332  34444444443221100   011123345789999888765

>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}

Probab=81.23  E-value=8.2  Score=34.04  Aligned_cols=64  Identities=13%  Similarity=0.169  Sum_probs=47.2

Q ss_pred             cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEee-----CCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT-----TAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKT-----TaPk~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      -|.|++. .+.|+...   -..+|+|+|.++.++.-.+-.     ....-|.|.|+.--|+||+...|.|+..
T Consensus        23 ~v~l~~T-RvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~   91 (239)
T 4djm_A           23 SLHLGAT-RVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRT   91 (239)
T ss_dssp             CCEESCS-EEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEEC
T ss_pred             eEEEcce-EEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEEC
Confidence            3788885 77776532   237999999998875544321     1122499999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d1wica_	152	b.1.11.2 (A:) MSP domain containing protein 2, Mos	6e-28
d1m1sa_	109	b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan	1e-20
d1grwa_	124	b.1.11.2 (A:) Major sperm protein, MSP {Nematode (	4e-20
d1rowa_	107	b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele	3e-18

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (256), Expect = 6e-28
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 14/138 (10%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L + P+  LYF      + ++ + L N +K+ VAFK +TTAP+   ++P      PG SI
Sbjct: 19  LHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 78

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVP----ELFDEQKDQVTVER 192
              V              L   ++D+F IM+ +++      P    + + E      +E 
Sbjct: 79  DIIVSPH---------GGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEH 129

Query: 193 ILRVVFLNAERP-SPALE 209
            LR   + + +P S  L 
Sbjct: 130 RLRCHTVESSKPNSLMLS 147

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 81.8 bits (202), Expect = 1e-20
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 15/111 (13%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           + +DP     +P   G  T     + + S S +AFK +++  +   +RP  G +      
Sbjct: 4   INVDP-PTGNYPATGGNST---HNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 59

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQ 187
              +           R P   K +DK  I   +V          F     Q
Sbjct: 60  KLDIN----------RLPGPPK-EDKIVIQYAEVPAEETDPMAPFKAGAQQ 99

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 81.5 bits (201), Expect = 4e-20
 Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 10/129 (7%)

Query: 73  PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
           P   ++  P   + F      +    +++ N+S   + +  +TT  K   + PP GVL P
Sbjct: 3   PPGDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDP 62

Query: 133 GDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI--DYVPELFDEQKDQVTV 190
            ++++  V        +      +  + D+  +       G    +  E F  Q D +  
Sbjct: 63  KEAVLLAVSC------DAFAFGQEDTNNDRITVEWTNTPDGAAKQFRREWF--QGDGMVR 114

Query: 191 ERILRVVFL 199
            + L + + 
Sbjct: 115 RKNLPIEYN 123

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 75.6 bits (186), Expect = 3e-18
 Identities = 19/116 (16%), Positives = 30/116 (25%), Gaps = 17/116 (14%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L  DP         P     S  +L N     + FK +++      + P  G + P  S 
Sbjct: 1   LTADPPACTV----PAAGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 56

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELF--DEQKDQVTV 190
              +           R       +DK  +               F        VT+
Sbjct: 57  DVVIT----------RTA-GAPKEDKLVVHFASAPADATDAQAAFVAVAPAGTVTI 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1wica_	152	MSP domain containing protein 2, Mospd2 {Mouse (Mu	99.97
d1grwa_	124	Major sperm protein, MSP {Nematode (Caenorhabditis	99.97
d1m1sa_	109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	99.92
d1rowa_	107	SSP-19 {Nematode (Caenorhabditis elegans) [TaxId:	99.91
d2co7b1	128	Periplasmic chaperone SafB {Salmonella typhimurium	95.01
d1p5va1	141	Chaperone protein Caf1m {Yersinia pestis [TaxId: 6	94.07
d2j2za1	124	Pilus chaperone PapD, N-domain {Escherichia coli [	91.25
d3bwuc1	121	Periplasmic chaperone FimC {Escherichia coli [TaxI	90.57
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	87.81

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.3e-32  Score=225.34  Aligned_cols=125  Identities=26%  Similarity=0.377  Sum_probs=110.7

Q ss_pred             CCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCC
Q 024590           74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQ  153 (265)
Q Consensus        74 ~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~p  153 (265)
                      +++|.|+|.++|+|.+++++++++.|+|+|.++++||||||||+|++|+|||+.|+|.||+++.|.|+++   +.     
T Consensus        16 ~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~---~~-----   87 (152)
T d1wica_          16 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPH---GG-----   87 (152)
T ss_dssp             CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEEC---SS-----
T ss_pred             CCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEEC---CC-----
Confidence            5779999988999999999999999999999999999999999999999999999999999999999995   31     


Q ss_pred             CCCCCCCCeEEEEEEEeCCCC----CChhhhhhccCCCcceEEEEEEEEecCC-CCChH
Q 024590          154 PLDQKSKDKFKIMSLKVKGGI----DYVPELFDEQKDQVTVERILRVVFLNAE-RPSPA  207 (265)
Q Consensus       154 p~~~~~kDKFLVqS~~v~~~~----d~~~elFk~~~~~~i~e~kLrV~fv~p~-~pSp~  207 (265)
                       ....++|||+|+++.+++..    +++.++|++..+..++++||+|+|+.+. +++++
T Consensus        88 -~~~~~kdKFli~~~~v~~~~~~~~~d~~~~wk~~~~~~i~~~kLkv~~~~~~~p~s~~  145 (152)
T d1wica_          88 -LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLM  145 (152)
T ss_dssp             -SCCCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSC
T ss_pred             -CcccCCCcEEEEEEEeCCCCCCCccCHHHHhhcCCcCcEEEEEEEEEEeCCCCCCCcc
Confidence             23578999999999998654    2468999998888899999999999866 45544

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.4e-29  Score=205.47  Aligned_cols=122  Identities=16%  Similarity=0.268  Sum_probs=104.6

Q ss_pred             CCCCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCc
Q 024590           71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENN  150 (265)
Q Consensus        71 ~p~~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~  150 (265)
                      +|++ .|.++|.++|+|++++++.+++.|+|+|+++.+||||||||+|++|+|||++|+|.||+++.|.|+|+   |+..
T Consensus         2 ~p~~-~l~i~P~~~L~F~~p~~~~~~~~l~l~N~s~~~vafKvktt~p~~y~v~P~~G~i~p~~~~~i~V~~~---~~~~   77 (124)
T d1grwa_           2 VPPG-DIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCD---AFAF   77 (124)
T ss_dssp             CCCC-CEEEESSSCEEEESCCSSCEEEEEEEEECSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEEC---CCCG
T ss_pred             cCCC-ceEECCCCeEEEecCCCcEEEEEEEEECCCCCeEEEEEEeCCCceEEEECCCCEECCCCEEEEEEEEe---cCCC
Confidence            5555 49999999999999999999999999999999999999999999999999999999999999999996   4322


Q ss_pred             CCCCCCCCCCCeEEEEEEEeCCCC-CChhhhhhccCCCcceEEEEEEEEec
Q 024590          151 ERQPLDQKSKDKFKIMSLKVKGGI-DYVPELFDEQKDQVTVERILRVVFLN  200 (265)
Q Consensus       151 E~pp~~~~~kDKFLVqS~~v~~~~-d~~~elFk~~~~~~i~e~kLrV~fv~  200 (265)
                         .....++|||+|+++.++++. +...+.|+...+ .+.+++|+|.|.+
T Consensus        78 ---~~~~~~~dkF~v~~~~~p~~~~~~~~~~w~~~~~-~~~~~~l~V~Y~p  124 (124)
T d1grwa_          78 ---GQEDTNNDRITVEWTNTPDGAAKQFRREWFQGDG-MVRRKNLPIEYNP  124 (124)
T ss_dssp             ---GGSCCTTCEEEEEEEECCSSCCSSCCGGGGTSSS-CCEEEEEEEEEEC
T ss_pred             ---CCcccCCceEEEEEEECCCccHHHHHHHHhccCC-ceEEEEEEEEeCC
Confidence               234678999999999998763 445666665543 5789999999974

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=1.4e-24  Score=172.27  Aligned_cols=105  Identities=21%  Similarity=0.294  Sum_probs=90.3

Q ss_pred             CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCCC
Q 024590           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQP  154 (265)
Q Consensus        75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp  154 (265)
                      .+|.|+|. +|.|+++.|   +++++|+|.|+.+||||||||+|++|+|+|++|+|.||+++.|.|+++   |+      
T Consensus         2 ~~L~i~P~-~l~F~~~~g---~~~~~l~N~s~~~vafKiktt~~~~y~V~P~~G~I~P~~~~~i~I~~~---~~------   68 (109)
T d1m1sa_           2 SMINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRL---PG------   68 (109)
T ss_dssp             CSEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEEC---SC------
T ss_pred             ceEEEeCC-EEEeecCCC---cEEEEEECCCCCcEEEEEEcCCCCeEEEeCCeeEECCCCeEEEEEEeC---CC------
Confidence            46999995 999997755   479999999999999999999999999999999999999999999995   43      


Q ss_pred             CCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEE
Q 024590          155 LDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRV  196 (265)
Q Consensus       155 ~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV  196 (265)
                        ...+|||+|+++.++++.++..++|+.....  .+..++.
T Consensus        69 --~~~~DKf~I~~~~~~~~~~d~~~~fk~~~~~--~~~~ikl  106 (109)
T d1m1sa_          69 --PPKEDKIVIQYAEVPAEETDPMAPFKAGAQQ--GEIIVKL  106 (109)
T ss_dssp             --CSCEEEEEEEEEEECTTCCCTTHHHHTTCCC--EEEEEEE
T ss_pred             --CCCCCEEEEEEEECCCCCcCHHHHHhcCCCC--CcEEEEE
Confidence              1367999999999999888889999987654  3444443

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=4e-24  Score=169.44  Aligned_cols=104  Identities=15%  Similarity=0.184  Sum_probs=88.7

Q ss_pred             EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCCCCC
Q 024590           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD  156 (265)
Q Consensus        77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~~  156 (265)
                      |.++|. +|.|+...   .++.++|+|.|+.+||||||||+|.+|+|+|+.|+|.||+++.|.|+++   |+        
T Consensus         1 l~~dP~-~~~f~~~~---g~~~~~l~N~s~~~vafKvKtt~~~~y~V~P~~G~i~P~~~~~I~I~~~---~~--------   65 (107)
T d1rowa_           1 LTADPP-ACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRT---AG--------   65 (107)
T ss_dssp             CEEESS-SEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEEC---SC--------
T ss_pred             CeeCCC-cceeeCCC---CeEEEEEEcCCCCeEEEEEEcCCCCeEEEECCEEEECCCCEEEEEEEeC---CC--------
Confidence            679996 89998664   4689999999999999999999999999999999999999999999995   42        


Q ss_pred             CCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEE
Q 024590          157 QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVV  197 (265)
Q Consensus       157 ~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~  197 (265)
                      ...+|||+||++.++++.++..++|+.....  .+..|++.
T Consensus        66 ~~~~DKf~I~~~~~~~~~~d~~~~fk~~~~~--~~~~ikl~  104 (107)
T d1rowa_          66 APKEDKLVVHFASAPADATDAQAAFVAVAPA--GTVTIPMS  104 (107)
T ss_dssp             CCEEEEEEEEEEECCTTCSCHHHHHTTCCCC--EEEEEEEE
T ss_pred             CCCCCEEEEEEEECCCCCcCHHHHhhcCCCC--CcEEEEEE
Confidence            2367999999999999988899999976543  34455543

>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone SafB
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.01  E-value=0.21  Score=38.02  Aligned_cols=63  Identities=10%  Similarity=0.194  Sum_probs=48.9

Q ss_pred             EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC-----CCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTT-----aPk~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      |.|+.. .+.|...   +-..+|+|+|.++.++-..+...     ....|.|.|+.-.|+||+...|.|...
T Consensus         7 v~l~~T-Rvi~~~~---~~~~sv~l~N~~~~p~lvQ~~v~~~~~~~~~~fivtPPl~rl~p~~~q~vRI~~~   74 (128)
T d2co7b1           7 VKLGAT-RVIYHAG---TAGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRT   74 (128)
T ss_dssp             CEESCS-EEEEETT---SSCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEEC
T ss_pred             EEECCe-EEEEcCC---CCEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEeCceeEECCCCceEEEEEec
Confidence            677884 7888643   23479999999999876665432     233599999999999999999999874

>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Chaperone protein Caf1m
species: Yersinia pestis [TaxId: 632]

Probab=94.07  E-value=0.93  Score=34.91  Aligned_cols=64  Identities=16%  Similarity=0.184  Sum_probs=49.4

Q ss_pred             cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCC-------cceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAP-------KSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaP-------k~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      -|.|+.. .+.|+..   +-..+|+|+|.++.++...+.....       .-|.|.|+.-.|+||+...|.|...
T Consensus         7 Gv~l~~T-RvIy~~~---~~~~s~~v~N~~~~p~lvQ~wv~~~~~~~~~~~pfivtPPl~rl~p~~~~~lRI~~~   77 (141)
T d1p5va1           7 GVTIGES-RIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQA   77 (141)
T ss_dssp             EEEESCS-EEEEETT---CSCEEEEEEECSSSCEEEEEEECC---------CEEEESSEEEECTTCEEEEEEEEC
T ss_pred             eeEeCcc-EEEEcCC---CcEEEEEEEeCCCCCEEEEEEEEcCCCCcCCCCCeEEcCCeEEECCCCceEEEEEec
Confidence            3677874 7777743   2347999999999998888765432       2299999999999999999999763

>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Pilus chaperone PapD, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.25  E-value=2.1  Score=31.92  Aligned_cols=63  Identities=16%  Similarity=0.196  Sum_probs=44.5

Q ss_pred             EEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEEeeC--C-----CcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTT--A-----PKSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~-~VAFKVKTT--a-----Pk~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      +.|+.. .+.|+..   .-..+++|+|.+++ ++-......  .     ..-|.|.|+.-.|+||+...|.|.+.
T Consensus         2 i~l~~T-RvI~~~~---~~~~~i~v~N~~~~~p~LvQswv~~~~~~~~~~~~fivtPPl~rl~p~~~~~vRI~~~   72 (124)
T d2j2za1           2 VSLDRT-RAVFDGS---EKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTT   72 (124)
T ss_dssp             EEESCS-EEEEETT---SSEEEEEEEECCSSSCEEEEEEEECTTSCEESSSSEEEECSEEEECTTCEEEEEEEEC
T ss_pred             eEeCCc-EEEEeCC---CCEEEEEEEeCCCCccEEEEEEEecCCCCccccCCeEECCCeEEECCCCcceEEEEEc
Confidence            566664 7777642   23489999998775 443333221  1     22399999999999999999999875

>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone FimC
species: Escherichia coli [TaxId: 562]

Probab=90.57  E-value=2.5  Score=31.43  Aligned_cols=63  Identities=10%  Similarity=0.169  Sum_probs=44.8

Q ss_pred             EEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEE-----eeCCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKF-----QTTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~-~VAFKV-----KTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      +.++.. .+.|+..   +..+.++|+|.+++ ++....     ..+....|.|.|+.--|+||+...|.|+..
T Consensus         2 i~l~~T-RvI~~~~---~~~~~~~i~N~~~~~~~lvq~wv~~~d~~~~~~fivtPPl~rl~p~~~q~vRI~~~   70 (121)
T d3bwuc1           2 VALGAT-RVIYPAG---QKQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDA   70 (121)
T ss_dssp             EEESCS-EEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCCCSSEEEESSEEEEESSEEEEEEEEEC
T ss_pred             eeECce-EEEEcCC---CceEEEEEEECCCCccEEEEEEEEcCCCCcCCCeeECCCcEEeCCCCeeEEEEEec
Confidence            456664 6777642   34589999998764 433222     123445699999999999999999999874

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=87.81  E-value=0.34  Score=35.72  Aligned_cols=54  Identities=26%  Similarity=0.241  Sum_probs=46.4

Q ss_pred             CCCCeeEEEEEEEcCCCCeE-EEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590           90 EPGKQTRSAVRLKNTSKSHV-AFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (265)
Q Consensus        90 e~~k~vss~LtLkN~S~~~V-AFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq  143 (265)
                      ++|..++..++|+|..+..+ ..++-.+.|.-+.+.|..--|+||++..+++.+.
T Consensus        14 ~pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~~L~pG~s~~~~~~Vt   68 (103)
T d1w8oa1          14 EPGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVEPLMPGRQAKGQVTIT   68 (103)
T ss_dssp             CTTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEECCBCTTCEEEEEEEEE
T ss_pred             CCCCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcceeeCCCCcEEEEEEEE
Confidence            45888999999999988765 3466667899999999888899999999999986