Citrus Sinensis ID: 024600

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVRKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHG
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEcccccHHHHHHHHHHHcccccccEEEEcccccccccccEEEEEEEccccccHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccEEEcccccEEEEEccccccccccccccc
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccccccEEEEEEcccEEEEEcccccHHHHHHHHHHHcHHHcHcEEEccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccHHcccccccHEEEEHEEHccccccccccccccccccccccccccHHHHHHcccEEccccccEEEEEEcccccccccccccc
makprysrfptrkssssTLILTLLIMFTFAILILLAFGIlsmpsssgdsrkandLSSIVRKSmersegdegrAEQWVEVISWEPRAFVYHNFLSKEECEYLINLatphmrkstvvdsdtgkskdsrvrtssgtflarGRDKIIRDIEKRIadftffplengeglqvlhyeagqkyephfdyfmdefntknggQRMATVLMYLSDveeggetvfpnaqgnisavpwwnelsecgktglsikpkmgDALLFWsmkpdasldpsslhg
makprysrfptrksssstLILTLLIMFTFAILILLAFGILSMpsssgdsrkandlSSIVRKsmersegdegraeqWVEVISWEPRAFVYHNFLSKEECEYLINLatphmrkstvvdsdtgkskdsrvrtssgtflargrdkiIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSmkpdasldpsslhg
MAKPRYSRFPTRKsssstliltllimftfailillafgilsMPSSSGDSRKANDLSSIVRKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLArgrdkiirdiekriADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHG
*****************TLILTLLIMFTFAILILLAFGIL**********************************QWVEVISWEPRAFVYHNFLSKEECEYLINLATP**************************FLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWS**************
*****************TLILTLLIMFTFAILILLAFGIL******************************GRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVV******SKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASL****LHG
***************SSTLILTLLIMFTFAILILLAFGILSMP************SSIVR*************EQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMR*********************GTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDA*********
**************SSSTLILTLLIMFTFAILILLAFGILSMPSS**DSRKANDLSSIVRKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPD**********
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVRKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query265 2.2.26 [Sep-21-2011]
Q20065539 Prolyl 4-hydroxylase subu yes no 0.641 0.315 0.331 2e-22
P54001534 Prolyl 4-hydroxylase subu yes no 0.618 0.307 0.331 6e-22
P16924516 Prolyl 4-hydroxylase subu yes no 0.618 0.317 0.331 8e-21
Q60715534 Prolyl 4-hydroxylase subu yes no 0.618 0.307 0.320 1e-20
Q5RAG8534 Prolyl 4-hydroxylase subu yes no 0.618 0.307 0.315 3e-20
P13674534 Prolyl 4-hydroxylase subu yes no 0.618 0.307 0.315 3e-20
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.543 0.269 0.364 5e-20
Q1RMU3534 Prolyl 4-hydroxylase subu yes no 0.618 0.307 0.315 6e-20
O15460535 Prolyl 4-hydroxylase subu no no 0.550 0.272 0.354 2e-19
Q60716537 Prolyl 4-hydroxylase subu no no 0.550 0.271 0.354 3e-19
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 23/193 (11%)

Query: 77  VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 136
           VE++ ++P A ++ N +   E E +  LA+P ++++TV +S TG+ + +  R S   +L 
Sbjct: 318 VEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLK 377

Query: 137 RGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE----FNTKNGG 192
              D +I  + +RI DFT       E LQV +Y  G  Y+PHFD+   E    F T N G
Sbjct: 378 GDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTG 437

Query: 193 QRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSM 252
            R+ATVL Y+S  E GG TVF             N L      G ++ P   DAL ++++
Sbjct: 438 NRIATVLFYMSQPERGGATVF-------------NHL------GTAVFPSKNDALFWYNL 478

Query: 253 KPDASLDPSSLHG 265
           + D   D  + H 
Sbjct: 479 RRDGEGDLRTRHA 491
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
240256489289 iron ion binding / oxidoreductase/ oxido 1.0 0.916 0.781 1e-122
225468574288 PREDICTED: prolyl 4-hydroxylase subunit 1.0 0.920 0.792 1e-122
10177121267 prolyl 4-hydroxylase, alpha subunit-like 1.0 0.992 0.781 1e-122
147800995288 hypothetical protein VITISV_014644 [Viti 1.0 0.920 0.792 1e-122
297797785266 oxidoreductase [Arabidopsis lyrata subsp 1.0 0.996 0.777 1e-121
357483925289 Prolyl 4-hydroxylase alpha-2 subunit [Me 1.0 0.916 0.778 1e-121
356540840290 PREDICTED: prolyl 4-hydroxylase subunit 1.0 0.913 0.790 1e-121
363806698289 uncharacterized protein LOC100806046 [Gl 0.996 0.913 0.801 1e-120
255579590287 prolyl 4-hydroxylase alpha subunit, puta 0.992 0.916 0.800 1e-117
449491267287 PREDICTED: prolyl 4-hydroxylase subunit 0.992 0.916 0.804 1e-116
>gi|240256489|ref|NP_201407.4| iron ion binding / oxidoreductase/ oxidoreductase protein [Arabidopsis thaliana] gi|332010770|gb|AED98153.1| iron ion binding / oxidoreductase/ oxidoreductase protein [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/265 (78%), Positives = 234/265 (88%)

Query: 1   MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVR 60
           MA+PR  R   RKSS STL+  +LIM TF ILILLAFGILS+PS++  S KANDL+SIVR
Sbjct: 2   MARPRNHRPSARKSSHSTLVFAVLIMSTFVILILLAFGILSVPSNNAGSSKANDLTSIVR 61

Query: 61  KSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTG 120
           K+++RS  D+ + E+WVE+ISWEPRA VYHNFL+KEEC+YLI LA PHM KSTVVD  TG
Sbjct: 62  KTLQRSGEDDSKNERWVEIISWEPRASVYHNFLTKEECKYLIELAKPHMEKSTVVDEKTG 121

Query: 121 KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFD 180
           KS DSRVRTSSGTFLARGRDK IR+IEKRI+DFTF P+E+GEGLQVLHYE GQKYEPH+D
Sbjct: 122 KSTDSRVRTSSGTFLARGRDKTIREIEKRISDFTFIPVEHGEGLQVLHYEIGQKYEPHYD 181

Query: 181 YFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIK 240
           YFMDE+NT+NGGQR+ATVLMYLSDVEEGGETVFP A+GN SAVPWWNELSECGK GLS+K
Sbjct: 182 YFMDEYNTRNGGQRIATVLMYLSDVEEGGETVFPAAKGNYSAVPWWNELSECGKGGLSVK 241

Query: 241 PKMGDALLFWSMKPDASLDPSSLHG 265
           PKMGDALLFWSM PDA+LDPSSLHG
Sbjct: 242 PKMGDALLFWSMTPDATLDPSSLHG 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225468574|ref|XP_002263060.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296084059|emb|CBI24447.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|10177121|dbj|BAB10411.1| prolyl 4-hydroxylase, alpha subunit-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147800995|emb|CAN64470.1| hypothetical protein VITISV_014644 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297797785|ref|XP_002866777.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297312612|gb|EFH43036.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357483925|ref|XP_003612249.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] gi|355513584|gb|AES95207.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|356540840|ref|XP_003538892.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Glycine max] Back     alignment and taxonomy information
>gi|363806698|ref|NP_001242522.1| uncharacterized protein LOC100806046 [Glycine max] gi|255647110|gb|ACU24023.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255579590|ref|XP_002530636.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223529809|gb|EEF31744.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449491267|ref|XP_004158845.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 1.0 0.916 0.656 5e-92
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.996 0.919 0.645 1.1e-87
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.841 0.766 0.72 8.9e-86
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.845 0.772 0.678 3.3e-79
TAIR|locus:2088892288 AT3G28490 [Arabidopsis thalian 0.698 0.642 0.529 2e-47
TAIR|locus:2144960298 AT5G18900 [Arabidopsis thalian 0.713 0.634 0.507 2e-47
TAIR|locus:2081106299 P4H2 "prolyl 4-hydroxylase 2" 0.713 0.632 0.507 4.8e-46
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.675 0.632 0.512 2.2e-41
TAIR|locus:2125344272 AT4G35820 [Arabidopsis thalian 0.509 0.496 0.522 5.8e-34
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.732 0.673 0.358 1.1e-30
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 174/265 (65%), Positives = 198/265 (74%)

Query:     1 MAKPRYSRFPTRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPSSSGDSRKANDLSSIVR 60
             MA+PR  R   RK                            +PS++  S KANDL+SIVR
Sbjct:     2 MARPRNHRPSARKSSHSTLVFAVLIMSTFVILILLAFGILSVPSNNAGSSKANDLTSIVR 61

Query:    61 KSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTG 120
             K+++RS  D+ + E+WVE+ISWEPRA VYHNFL+KEEC+YLI LA PHM KSTVVD  TG
Sbjct:    62 KTLQRSGEDDSKNERWVEIISWEPRASVYHNFLTKEECKYLIELAKPHMEKSTVVDEKTG 121

Query:   121 KSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFD 180
             KS DSRVRTSSGTFLA              +DFTF P+E+GEGLQVLHYE GQKYEPH+D
Sbjct:   122 KSTDSRVRTSSGTFLARGRDKTIREIEKRISDFTFIPVEHGEGLQVLHYEIGQKYEPHYD 181

Query:   181 YFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIK 240
             YFMDE+NT+NGGQR+ATVLMYLSDVEEGGETVFP A+GN SAVPWWNELSECGK GLS+K
Sbjct:   182 YFMDEYNTRNGGQRIATVLMYLSDVEEGGETVFPAAKGNYSAVPWWNELSECGKGGLSVK 241

Query:   241 PKMGDALLFWSMKPDASLDPSSLHG 265
             PKMGDALLFWSM PDA+LDPSSLHG
Sbjct:   242 PKMGDALLFWSMTPDATLDPSSLHG 266
GO:0005506 "iron ion binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125344 AT4G35820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT5G66060
iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN- oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and [...] (289 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G38710
proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative; proline [...] (476 aa)
     •  0.899
P5CR
P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE); pyrroline-5-carboxylate reductase; Delta 1-pyr [...] (276 aa)
     •  0.899
ERD5
ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5); proline dehydrogenase; Encodes a proline oxidase that [...] (499 aa)
     •  0.899
PIP
PIP; aminopeptidase; encodes proline iminopeptidase ; Specifically catalyzes the removal of N-t [...] (380 aa)
     •  0.899
BCP1
BCP1; Male fertility gene acting on tapetum and microspore (119 aa)
      • 0.540
AGP17
AGP17 (ARABINOGALACTAN PROTEIN 17); AGP17 is a lysine-rich arabinogalactan-protein (AGP) and pa [...] (185 aa)
      • 0.407
AGP19
AGP19 (ARABINOGALACTAN-PROTEIN 19); AGP19 is a lysine-rich arabinogalactan-protein (AGP) and pa [...] (248 aa)
      • 0.407

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 4e-72
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 6e-38
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 2e-06
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 7e-05
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  223 bits (568), Expect = 4e-72
 Identities = 103/189 (54%), Positives = 133/189 (70%), Gaps = 1/189 (0%)

Query: 77  VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 136
           V+ +SW+PR FVY  FLS  EC++L+ LA   +++S V D+ +GKS  S VRTSSG FL 
Sbjct: 47  VKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLD 106

Query: 137 RGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMA 196
           + +D ++  IE+RIA +TF P EN E +Q+L YE GQKYEPHFDYF D+ N   GG R A
Sbjct: 107 KRQDPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYA 166

Query: 197 TVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDA 256
           TVLMYLS V++GGETVFPNA+G  +  P  +  SEC   GL++KP  GDA+LF+S+  D 
Sbjct: 167 TVLMYLSTVDKGGETVFPNAEGWENQ-PKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDG 225

Query: 257 SLDPSSLHG 265
             DP SLHG
Sbjct: 226 VPDPLSLHG 234

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 99.97
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.86
PHA02813 354 hypothetical protein; Provisional 99.48
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.43
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.18
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 98.88
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.62
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 97.88
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 97.58
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 97.55
PHA02866 333 Hypothetical protein; Provisional 97.07
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 97.01
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 96.86
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 96.46
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 96.05
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 95.89
TIGR02466201 conserved hypothetical protein. This family consis 95.58
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 94.51
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 93.8
KOG3200224 consensus Uncharacterized conserved protein [Funct 92.9
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 89.41
KOG3844 476 consensus Predicted component of NuA3 histone acet 87.51
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-52  Score=384.76  Aligned_cols=194  Identities=53%  Similarity=0.904  Sum_probs=177.9

Q ss_pred             CCCceeEEEEecCCCEEEEcCCCCHHHHHHHHHHHcCCCCcceeEeCCCCCccccceeeccceeecCCccHHHHHHHHHH
Q 024600           71 GRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRI  150 (265)
Q Consensus        71 ~~~~~~ve~ls~~P~i~vi~nfLs~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~RtS~~~~l~~~~d~~v~~i~~Ri  150 (265)
                      .-.+.++|+||++|+||+|+||||++||++||+++++.+++++++++.+|+...+++|+|+++|+...+++++++|++||
T Consensus        41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ri  120 (310)
T PLN00052         41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERI  120 (310)
T ss_pred             CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHH
Confidence            44789999999999999999999999999999999999999999887777777889999999999887789999999999


Q ss_pred             hhccCCCCCCCcccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCCCCCCCCCCcccccc
Q 024600          151 ADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELS  230 (265)
Q Consensus       151 ~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~~~~~~~~~~~  230 (265)
                      ++++++|.++.|++||+||++||+|++|+|++.+..+...+++|++|+|+||||+++||||+||.+.. ....+.++.++
T Consensus       121 a~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~-~~~~~~~~~~s  199 (310)
T PLN00052        121 AAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEG-WENQPKDDTFS  199 (310)
T ss_pred             HHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCccc-ccccccccchh
Confidence            99999999999999999999999999999999765444568899999999999999999999998753 22345567889


Q ss_pred             ccCCCCeeEecCCceEEEEecCCCCCCCCCCCCCC
Q 024600          231 ECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHG  265 (265)
Q Consensus       231 ~c~~~~l~V~Pk~G~AlvF~n~~~dg~~D~~slH~  265 (265)
                      +|.+.+++|+|++|+||||+|+++||++|++|+|+
T Consensus       200 ~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHa  234 (310)
T PLN00052        200 ECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHG  234 (310)
T ss_pred             hhhcCCeEeccCcceEEEEeccCCCCCCCcccccC
Confidence            99999999999999999999999999999999997

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 2e-56
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 2e-56
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 2e-56
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 5e-54
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 5e-23
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/197 (54%), Positives = 135/197 (68%), Gaps = 9/197 (4%)
Query: 74  EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 130
           E+W   V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS
Sbjct: 16  EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT-- 188
           +GT+ A              A  T  PLEN EGLQVLHY  GQKYEPH+DYF D  N   
Sbjct: 76  TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 135
Query: 189 KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALL 248
           ++GGQR+ T+LMYL+ VEEGGETV PNA+  ++   W    SEC K GL++KP  GDAL+
Sbjct: 136 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 191
Query: 249 FWSMKPDASLDPSSLHG 265
           F+S+KPD S DP+SLHG
Sbjct: 192 FYSLKPDGSNDPASLHG 208
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 5e-89
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 2e-76
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 4e-08
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  262 bits (671), Expect = 5e-89
 Identities = 112/195 (57%), Positives = 142/195 (72%), Gaps = 6/195 (3%)

Query: 73  AEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSG 132
               V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS+G
Sbjct: 9   WRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTG 68

Query: 133 TFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--KN 190
           T+ A+G D +I  IEKR+A  T  PLEN EGLQVLHY  GQKYEPH+DYF D  N   ++
Sbjct: 69  TWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEH 128

Query: 191 GGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW 250
           GGQR+ T+LMYL+ VEEGGETV PNA+  ++   W    SEC K GL++KP  GDAL+F+
Sbjct: 129 GGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALMFY 184

Query: 251 SMKPDASLDPSSLHG 265
           S+KPD S DP+SLHG
Sbjct: 185 SLKPDGSNDPASLHG 199
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Length = 247 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 99.92
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.81
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 98.17
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.07
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 96.78
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 96.56
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 96.53
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 95.96
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 95.83
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 95.24
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 95.04
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 94.59
3gja_A 319 CYTC3; halogenase, beta barrel, biosynthetic prote 94.38
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 91.4
3nnf_A 344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 88.32
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=2.5e-47  Score=334.06  Aligned_cols=191  Identities=58%  Similarity=0.981  Sum_probs=174.3

Q ss_pred             CCCceeEEEEecCCCEEEEcCCCCHHHHHHHHHHHcCCCCcceeEeCCCCCccccceeeccceeecCCccHHHHHHHHHH
Q 024600           71 GRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRI  150 (265)
Q Consensus        71 ~~~~~~ve~ls~~P~i~vi~nfLs~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~RtS~~~~l~~~~d~~v~~i~~Ri  150 (265)
                      ++.+.|+|+||++|+|++|+||||++||++||+++++.+.+++++++.+|....+.+|+|+.+|++...++++++|++||
T Consensus         7 ~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~ri   86 (224)
T 2jig_A            7 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRV   86 (224)
T ss_dssp             CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHHHH
T ss_pred             cccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999888777777889999999999976689999999999


Q ss_pred             hhccCCCCCCCcccEEEEcCCCCCcccCccCCcccccc--CCCCceEEEEEEecccCCCCcceeccCCCCCCCCCCcccc
Q 024600          151 ADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNE  228 (265)
Q Consensus       151 ~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~--~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~~~~~~~~~  228 (265)
                      .+++++|...+|++||+||++||+|++|+|++....+.  ..+++|++|+++||||+++||||+||...    ..+.|+.
T Consensus        87 ~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~----~~~~~~~  162 (224)
T 2jig_A           87 AQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAE----QKVTGDG  162 (224)
T ss_dssp             HHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSS----SCCCSTT
T ss_pred             HHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCcc----ccccccc
Confidence            99999999999999999999999999999998753221  34679999999999999999999999864    2356888


Q ss_pred             ccccCCCCeeEecCCceEEEEecCCCCCCCCCCCCCC
Q 024600          229 LSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHG  265 (265)
Q Consensus       229 ~~~c~~~~l~V~Pk~G~AlvF~n~~~dg~~D~~slH~  265 (265)
                      +++|.+.+++|+|++|+||||+|+++||++|++++|+
T Consensus       163 ~~~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~  199 (224)
T 2jig_A          163 WSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHG  199 (224)
T ss_dssp             SCTTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEE
T ss_pred             ccccccCceEEecccCcEEEEEeeCCCCCCCCCCccc
Confidence            9999988999999999999999999999999999995
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 96.87
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 96.76
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 94.55
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 93.81
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.0055  Score=51.45  Aligned_cols=79  Identities=14%  Similarity=0.258  Sum_probs=43.2

Q ss_pred             cccCccCCccccccCCCCceEEEEEEecccCC-CCcceec-cCCCCC-C--CCCCccc--------cccc--cCCCCeeE
Q 024600          175 YEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE-EGGETVF-PNAQGN-I--SAVPWWN--------ELSE--CGKTGLSI  239 (265)
Q Consensus       175 y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~-eGGeT~F-p~~~~~-~--~~~~~~~--------~~~~--c~~~~l~V  239 (265)
                      ..||.|.....   .......+++.++|.|+. +.|.+.| |..... .  ...+.+.        ...+  -....+.+
T Consensus       130 ~~wHqD~~~~~---~~~~~~~~~~wi~L~d~~~~nG~l~vipGSHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  206 (296)
T d2a1xa1         130 HPLHQDLHYFP---FRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHL  206 (296)
T ss_dssp             -CCBCGGGGCC---EECGGGEEEEEEESSCBCTTBTCEEECTTGGGSCCCCCCC-----------CCCCC-CCCSCCEEE
T ss_pred             CCcccCccccc---cCCccccceeeEeeeeccccccccceecccccccccccccccccCCcccccccccchhhccceEEe
Confidence            46899975321   223457899999999985 5677766 433210 0  0000000        0000  01123567


Q ss_pred             ecCCceEEEEecCCCCC
Q 024600          240 KPKMGDALLFWSMKPDA  256 (265)
Q Consensus       240 ~Pk~G~AlvF~n~~~dg  256 (265)
                      .-++|++|+|.....+|
T Consensus       207 ~~k~Gdvli~~~~l~Hg  223 (296)
T d2a1xa1         207 VMEKGDTVFFHPLLIHG  223 (296)
T ss_dssp             CBCTTCEEEECTTCCEE
T ss_pred             eecCCcEEEECCCeeec
Confidence            77999999998655554
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure