Citrus Sinensis ID: 024613

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAVS
cHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccc
ccHHHHHHHHHHHHcccHcccccccccccHHHcccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccEEEEc
masvcaspavaaisspssqksrsvagatkasflggkklklrkngatagtrsvsvsaaaadpnrplwfpgstppewldgslpgdfgfdplglgsdpetlRWNVQSEIVHCRWAMLGAAGIFIPELLTKlgilntpswytageleyftdtTTLFIVEMIFIGWaegrrwadiikpgcvntdpifpnnkltgtdvgypgglwfdplgwgsgspekVKELRTKEIKNGRLAMLAVMGAWFQHiytgtgpidnliahladpghatvfavs
masvcaspavaaisspssqksrsvagatkasflggkklklrkngatagtrsvsvsaaaadpnrplWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAVS
MasvcaspavaaisspssQKSRSVAGATKASFlggkklklrkngATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAVS
****************************************************************LWFPG***PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG******ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF***
MA*****PA**********************************************************PGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAVS
****************************KASFLGGKKLKL***************AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAVS
*********************************************************AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAVS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
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MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query265 2.2.26 [Sep-21-2011]
P13869270 Chlorophyll a-b binding p N/A no 0.992 0.974 0.841 1e-132
P10708270 Chlorophyll a-b binding p N/A no 0.992 0.974 0.822 1e-129
P27521251 Chlorophyll a-b binding p no no 0.928 0.980 0.459 6e-60
Q9SQL2252 Chlorophyll a-b binding p N/A no 0.913 0.960 0.484 8e-60
Q36718231 Chlorophyll a-b binding p N/A no 0.750 0.861 0.485 7e-47
P27522273 Chlorophyll a-b binding p N/A no 0.8 0.776 0.437 9e-43
Q32904275 Chlorophyll a-b binding p N/A no 0.8 0.770 0.430 2e-42
Q01667241 Chlorophyll a-b binding p no no 0.667 0.734 0.419 6e-34
P12333267 Chlorophyll a-b binding p N/A no 0.849 0.842 0.381 6e-34
Q9SDM1245 Chlorophyll a-b binding p N/A no 0.811 0.877 0.372 2e-33
>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1 Back     alignment and function desciption
 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 223/265 (84%), Positives = 245/265 (92%), Gaps = 2/265 (0%)

Query: 1   MASVCASPAVAAI--SSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA 58
           MAS CAS  +AA+  SSPSSQK+ S+ GATKASFLGGK+L++ K  A  G+RSV+VSA A
Sbjct: 1   MASACASSTIAAVAFSSPSSQKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVA 60

Query: 59  ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAG 118
           ADP+RPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE+L+WN Q+E+VH RWAMLGAAG
Sbjct: 61  ADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAG 120

Query: 119 IFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 178
           IFIPE LTK+G+LNTPSWYTAGE EYFTDTTTLF++E++ IGWAEGRRWADIIKPGCVNT
Sbjct: 121 IFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNT 180

Query: 179 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 238
           DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQH
Sbjct: 181 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH 240

Query: 239 IYTGTGPIDNLIAHLADPGHATVFA 263
           IYTGTGPIDNL AHLADPGHAT+FA
Sbjct: 241 IYTGTGPIDNLFAHLADPGHATIFA 265
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Petunia hybrida (taxid: 4102)
>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1 Back     alignment and function description
>sp|P27521|CA4_ARATH Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1 Back     alignment and function description
>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1 Back     alignment and function description
>sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1 Back     alignment and function description
>sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1 Back     alignment and function description
>sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1 Back     alignment and function description
>sp|Q01667|CAB6_ARATH Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA1 PE=1 SV=1 Back     alignment and function description
>sp|P12333|CB2A_SPIOL Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Back     alignment and function description
>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
225425420271 PREDICTED: chlorophyll a-b binding prote 0.992 0.970 0.890 1e-133
115766270 RecName: Full=Chlorophyll a-b binding pr 0.992 0.974 0.841 1e-130
224057740272 light-harvesting complex I protein Lhca2 0.988 0.963 0.847 1e-129
115765270 RecName: Full=Chlorophyll a-b binding pr 0.992 0.974 0.822 1e-127
356520198270 PREDICTED: chlorophyll a-b binding prote 0.939 0.922 0.855 1e-124
118487538269 unknown [Populus trichocarpa] 0.988 0.973 0.856 1e-124
356559462270 PREDICTED: chlorophyll a-b binding prote 0.939 0.922 0.855 1e-124
255547714270 chlorophyll A/B binding protein, putativ 0.988 0.970 0.842 1e-123
118487549269 unknown [Populus trichocarpa] 0.988 0.973 0.849 1e-123
356520200281 PREDICTED: chlorophyll a-b binding prote 0.928 0.875 0.857 1e-123
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis vinifera] gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/266 (89%), Positives = 249/266 (93%), Gaps = 3/266 (1%)

Query: 1   MASVCASPAVAAIS--SPSSQKSRSVAGATKASFLGGKKLKLRKNGA-TAGTRSVSVSAA 57
           MASVCAS A+AA++  SPSSQK+ SV GATKASFLGGK+L L+K  A  AGTRS +VSAA
Sbjct: 1   MASVCASSAMAAVATISPSSQKTGSVVGATKASFLGGKRLSLKKFTAPAAGTRSFTVSAA 60

Query: 58  AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAA 117
           AADPNRPLWFPGSTPP WLDGSLPGDFGFDPLGLGSDPETL+W VQSEIVHCRWAMLGAA
Sbjct: 61  AADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAA 120

Query: 118 GIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVN 177
           GIFIPE LTK+GILNTPSWYTAGELEYFTD TTLFIVEMIFIGWAEGRRWADIIKPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYTAGELEYFTDKTTLFIVEMIFIGWAEGRRWADIIKPGCVN 180

Query: 178 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 237
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 238 HIYTGTGPIDNLIAHLADPGHATVFA 263
            IYTGTGPIDNL AHLADPGHAT+FA
Sbjct: 241 AIYTGTGPIDNLFAHLADPGHATIFA 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic; AltName: Full=LHCI type II CAB; Flags: Precursor gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida] gi|226259|prf||1503272A chlorophyll binding protein Back     alignment and taxonomy information
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa] gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic; AltName: Full=LHCI type II CAB-7; Flags: Precursor gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum] gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum] gi|226546|prf||1601518A chlorophyll a/b binding protein II Back     alignment and taxonomy information
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like isoform 1 [Glycine max] gi|255645717|gb|ACU23352.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
TAIR|locus:2082767257 LHCA2 "photosystem I light har 0.796 0.821 0.895 5.5e-109
TAIR|locus:2202150270 Lhca6 "photosystem I light har 0.815 0.8 0.640 4.3e-77
TAIR|locus:2079117251 LHCA4 "light-harvesting chloro 0.773 0.816 0.502 2.1e-54
TAIR|locus:2825741256 Lhca5 "photosystem I light har 0.8 0.828 0.464 2.9e-48
TAIR|locus:2146544173 AT5G28450 [Arabidopsis thalian 0.384 0.589 0.875 3.7e-48
TAIR|locus:2200868273 LHCA3 "photosystem I light har 0.728 0.706 0.471 1.9e-42
TAIR|locus:2082717241 LHCA1 "photosystem I light har 0.667 0.734 0.424 4.6e-34
TAIR|locus:2019287267 CAB3 "chlorophyll A/B binding 0.732 0.726 0.417 1.8e-32
TAIR|locus:2019372267 CAB2 "chlorophyll A/B-binding 0.732 0.726 0.417 1.8e-32
TAIR|locus:2019322267 CAB1 "chlorophyll A/B binding 0.732 0.726 0.417 1.8e-32
TAIR|locus:2082767 LHCA2 "photosystem I light harvesting complex gene 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1077 (384.2 bits), Expect = 5.5e-109, P = 5.5e-109
 Identities = 189/211 (89%), Positives = 201/211 (95%)

Query:    53 SVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWA 112
             SV A AADP+RP+WFPGSTPPEWLDGSLPGDFGFDPLGL SDP++L+WNVQ+EIVHCRWA
Sbjct:    42 SVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWA 101

Query:   113 MLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 172
             MLGAAGIFIPE LTK+GILNTPSWYTAGE EYFTD TTLF+VE+I IGWAEGRRWADIIK
Sbjct:   102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIK 161

Query:   173 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 232
             PG VNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVM
Sbjct:   162 PGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVM 221

Query:   233 GAWFQHIYTGTGPIDNLIAHLADPGHATVFA 263
             GAWFQHIYTGTGPIDNL AHLADPGHAT+FA
Sbjct:   222 GAWFQHIYTGTGPIDNLFAHLADPGHATIFA 252
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009765 "photosynthesis, light harvesting" evidence=IEA
GO:0009768 "photosynthesis, light harvesting in photosystem I" evidence=TAS
GO:0009782 "photosystem I antenna complex" evidence=TAS
GO:0015979 "photosynthesis" evidence=ISS
GO:0016020 "membrane" evidence=IEA;IDA
GO:0016168 "chlorophyll binding" evidence=ISS
GO:0030076 "light-harvesting complex" evidence=ISS
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
TAIR|locus:2202150 Lhca6 "photosystem I light harvesting complex gene 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079117 LHCA4 "light-harvesting chlorophyll-protein complex I subunit A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825741 Lhca5 "photosystem I light harvesting complex gene 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146544 AT5G28450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200868 LHCA3 "photosystem I light harvesting complex gene 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082717 LHCA1 "photosystem I light harvesting complex gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019372 CAB2 "chlorophyll A/B-binding protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019322 CAB1 "chlorophyll A/B binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P10708CB12_SOLLCNo assigned EC number0.82260.99240.9740N/Ano
P13869CB12_PETHYNo assigned EC number0.84150.99240.9740N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002813001
SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (270 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
PLN00098267 PLN00098, PLN00098, light-harvesting complex I chl 1e-116
PLN00097244 PLN00097, PLN00097, photosystem I light harvesting 1e-83
PLN00101250 PLN00101, PLN00101, Photosystem I light-harvesting 3e-83
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 3e-76
PLN00048262 PLN00048, PLN00048, photosystem I light harvesting 2e-58
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 2e-51
PLN00100246 PLN00100, PLN00100, light-harvesting complex chlor 2e-46
PLN00025262 PLN00025, PLN00025, photosystem II light harvestin 4e-45
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 1e-44
PLN00171324 PLN00171, PLN00171, photosystem light-harvesting c 3e-40
PLN00099243 PLN00099, PLN00099, light-harvesting complex IChlo 5e-40
PLN00170255 PLN00170, PLN00170, photosystem II light-harvestin 6e-37
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 7e-11
PLN00089209 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi 2e-08
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 4e-06
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 1e-04
>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information 
 Score =  334 bits (859), Expect = e-116
 Identities = 154/265 (58%), Positives = 187/265 (70%), Gaps = 5/265 (1%)

Query: 1   MASVCASPAVAAISSPSSQKSRS--VAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA 58
           MA   AS A+++++  + +  +         +    G ++K+R N    G  SV      
Sbjct: 1   MALAIASSALSSLTLSTRRVPQKALRRPIVASQSGTGGRMKVRLNATKGGVSSV---CEP 57

Query: 59  ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAG 118
             P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPE L+W  Q+E++H RWAML  AG
Sbjct: 58  LPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAG 117

Query: 119 IFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 178
           I IPE L +LG +   SWY AG  EYF D TTLF+V+M+ +GWAEGRRWAD+IKPGCV+ 
Sbjct: 118 ILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDI 177

Query: 179 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 238
           +P  PN      DVGYPGGLWFDP+ WG GSPE V  LRTKEIKNGRLAMLA +G  FQ 
Sbjct: 178 EPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQA 237

Query: 239 IYTGTGPIDNLIAHLADPGHATVFA 263
           +YTG GPI+NL+AHLADPGH  VF+
Sbjct: 238 VYTGEGPIENLMAHLADPGHCNVFS 262

Length = 267
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 100.0
PLN00101250 Photosystem I light-harvesting complex type 4 prot 100.0
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 100.0
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 100.0
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 100.0
PLN00187286 photosystem II light-harvesting complex II protein 100.0
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 100.0
PLN00171324 photosystem light-harvesting complex -chlorophyll 100.0
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 100.0
PLN00099243 light-harvesting complex IChlorophyll A-B binding 100.0
PLN00170255 photosystem II light-harvesting-Chl-binding protei 100.0
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 100.0
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 100.0
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 100.0
PLN00098 267 light-harvesting complex I chlorophyll a/b-binding 99.62
PLN00101 250 Photosystem I light-harvesting complex type 4 prot 99.6
PLN00170 255 photosystem II light-harvesting-Chl-binding protei 99.56
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 99.52
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 99.5
PLN00171 324 photosystem light-harvesting complex -chlorophyll 99.49
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 99.48
PLN00097 244 photosystem I light harvesting complex Lhca2/4, ch 99.48
PLN00025 262 photosystem II light harvesting chlorophyll a/b bi 99.47
PLN00100 246 light-harvesting complex chlorophyll-a/b protein o 99.45
PLN00187286 photosystem II light-harvesting complex II protein 99.43
PLN00099 243 light-harvesting complex IChlorophyll A-B binding 99.4
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 99.33
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.07
PHA0233735 putative high light inducible protein 98.22
PLN00084214 photosystem II subunit S (PsbS); Provisional 98.1
PLN00014250 light-harvesting-like protein 3; Provisional 97.66
PHA0233735 putative high light inducible protein 97.35
PLN00014250 light-harvesting-like protein 3; Provisional 96.08
PLN00084214 photosystem II subunit S (PsbS); Provisional 95.13
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-72  Score=512.91  Aligned_cols=213  Identities=68%  Similarity=1.304  Sum_probs=197.3

Q ss_pred             cccccCcCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCC
Q 024613           52 VSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL  131 (265)
Q Consensus        52 ~~~~~~~~~~~r~~~~p~~~~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l  131 (265)
                      ++.++.+++++|++|||+.++|+||||++|||||||||||++|+++++|||++|||||||||||++|+++||++++.|++
T Consensus        51 ~~~~~~~~~~~r~~w~Pg~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~  130 (267)
T PLN00098         51 VSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFI  130 (267)
T ss_pred             cccccccCCCCccccCCCCCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcc
Confidence            44566778999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             CCCcccccCccccccchhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCChH
Q 024613          132 NTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE  211 (265)
Q Consensus       132 ~~~~w~~ag~~~~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e  211 (265)
                      ....|+++|..+|+.++.+++++|+++||++|.+||+++.++|+++.++.+++...+..|.+||||++||||||.++|+|
T Consensus       131 ~~~~w~~Ag~~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~  210 (267)
T PLN00098        131 ENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPE  210 (267)
T ss_pred             cccccccccchhhccCchHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHH
Confidence            87789999988888888889999999999999999999999999888777765544445668999999999999877999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhhHHHhhcCCcccccccc
Q 024613          212 KVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAV  264 (265)
Q Consensus       212 ~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~  264 (265)
                      +++++|++||||||||||||+||++|+.+||++|++||.+||+||+|||||++
T Consensus       211 ~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~  263 (267)
T PLN00098        211 PVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSA  263 (267)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhh
Confidence            99999999999999999999999999999999999999999999999999985

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
2wsc_2269 Improved Model Of Plant Photosystem I Length = 269 1e-111
2o01_2186 The Structure Of A Plant Photosystem I Supercomplex 1e-100
3lw5_2176 Improved Model Of Plant Photosystem I Length = 176 7e-92
2wsc_4251 Improved Model Of Plant Photosystem I Length = 251 6e-56
2o01_4165 The Structure Of A Plant Photosystem I Supercomplex 4e-46
3lw5_4166 Improved Model Of Plant Photosystem I Length = 166 1e-45
2wsc_3276 Improved Model Of Plant Photosystem I Length = 276 3e-43
2wsc_1241 Improved Model Of Plant Photosystem I Length = 241 6e-35
2o01_1187 The Structure Of A Plant Photosystem I Supercomplex 1e-33
1rwt_A232 Crystal Structure Of Spinach Major Light-harvesting 2e-31
1vcr_A232 An Icosahedral Assembly Of Light-Harvesting Chlorop 3e-30
2bhw_A232 Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res 4e-30
3lw5_1170 Improved Model Of Plant Photosystem I Length = 170 6e-30
2o01_3165 The Structure Of A Plant Photosystem I Supercomplex 3e-28
3lw5_3172 Improved Model Of Plant Photosystem I Length = 172 3e-27
3pl9_A243 Crystal Structure Of Spinach Minor Light-Harvesting 7e-27
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269 Back     alignment and structure 
Iteration: 1

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/247 (79%), Positives = 212/247 (85%), Gaps = 3/247 (1%)
Query: 19  QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDG 78
           QK+ S +G +KA F            + +  RS S     A+P+RPLWFPGSTPP WLDG
Sbjct: 21  QKNGSPSGTSKA-FLGRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDG 79
Query: 79  SLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT 138
           SLPGDFGFDPLGLGSDPE+LRWNVQ+E+VH RWAMLGAAGIFIPE LTKLGILNTPSWYT
Sbjct: 80  SLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYT 139
Query: 139 AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGL 198
           AGE EYFTDTTTLFIVE++FIGWAEGRRWADI+ PGCVNTDPIFPNNKLTGTDVGYPGGL
Sbjct: 140 AGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGL 199
Query: 199 WFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI-AHLADPG 257
           WFDPLGWGS SP+K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL  AHLADP 
Sbjct: 200 WFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP- 258
Query: 258 HATVFAV 264
           HAT+FA 
Sbjct: 259 HATIFAA 265
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176 Back     alignment and structure
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251 Back     alignment and structure
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166 Back     alignment and structure
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276 Back     alignment and structure
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241 Back     alignment and structure
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Back     alignment and structure
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170 Back     alignment and structure
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172 Back     alignment and structure
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 5e-76
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 4e-66
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 2e-58
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 2e-54
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 7e-50
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 3e-44
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
 Score =  231 bits (588), Expect = 5e-76
 Identities = 199/267 (74%), Positives = 223/267 (83%), Gaps = 2/267 (0%)

Query: 1   MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGT-RSVSVSAAAA 59
           MAS CAS A+AA++  +    ++ + +  +    G+KLK+  + A+    RS S     A
Sbjct: 1   MASACASSAIAAVAISTPSSQKNGSPSGTSKAFLGRKLKVNSSTASPSRVRSTSTVCTVA 60

Query: 60  DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGI 119
           +P+RPLWFPGSTPP WLDGSLPGDFGFDPLGLGSDPE+LRWNVQ+E+VH RWAMLGAAGI
Sbjct: 61  EPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGI 120

Query: 120 FIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 179
           FIPE LTKLGILNTPSWYTAGE EYFTDTTTLFIVE++FIGWAEGRRWADI+ PGCVNTD
Sbjct: 121 FIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTD 180

Query: 180 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 239
           PIFPNNKLTGTDVGYPGGLWFDPLGWGS SP+K+KELRTKEIKNGRLAMLAVMGAWFQHI
Sbjct: 181 PIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHI 240

Query: 240 YTGTGPIDNLIA-HLADPGHATVFAVS 265
           YTGTGPIDNL A HLADP      A +
Sbjct: 241 YTGTGPIDNLFAAHLADPHATIFAAFT 267
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251 Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 100.0
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 100.0
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 100.0
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 100.0
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 100.0
2bhw_A 232 Chlorophyll A-B binding protein AB80; LHC-II, phot 99.45
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 99.42
2wsc_4 251 Chlorophyll A-B binding protein P4, chloroplastic; 99.42
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 99.41
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 99.38
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 99.26
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
Probab=100.00  E-value=4.3e-74  Score=523.52  Aligned_cols=261  Identities=81%  Similarity=1.421  Sum_probs=159.4

Q ss_pred             CccccccchhhhccCCC--cccccccccccccccccCccccccccCCCCCc-cccccccCcCCCCCCCCCCCCCCCCCCC
Q 024613            1 MASVCASPAVAAISSPS--SQKSRSVAGATKASFLGGKKLKLRKNGATAGT-RSVSVSAAAADPNRPLWFPGSTPPEWLD   77 (265)
Q Consensus         1 ~~~~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~p~~~~p~~l~   77 (265)
                      ||++|+|+++++++.++  .++....++++++ |+ +++++.++.++...+ ++.++++++|++||++|||+.++|+|||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~wlpg~~~P~~L~   78 (269)
T 2wsc_2            1 MASACASSAIAAVAISTPSSQKNGSPSGTSKA-FL-GRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLD   78 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CchhHhhHHHHHhhcCccccccccccccchhh-cc-ccccccccccccccccCCcceeecccCCCcccccCCCCCccccc
Confidence            78999998887765443  3445566777777 77 666665554432222 4555777889999999999999999999


Q ss_pred             CCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCCCCcccccCccccccchhhHHHHHHH
Q 024613           78 GSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMI  157 (265)
Q Consensus        78 G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~~~~w~~ag~~~~~~~~~~l~~~qi~  157 (265)
                      |++|||||||||||++|+|+++|||++|||||||||||++|+++||++++.|++..+.|+++|..++|.++++++++|++
T Consensus        79 G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~  158 (269)
T 2wsc_2           79 GSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELV  158 (269)
T ss_dssp             ---------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTT
T ss_pred             CcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999898877789999988889888899999999


Q ss_pred             HHHHHHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 024613          158 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ  237 (265)
Q Consensus       158 l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q  237 (265)
                      +||++|.+|++++.+||+++.++.|........|.+||||++||||||.+.|+|+++++|.+||||||||||||+|+++|
T Consensus       159 liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~  238 (269)
T 2wsc_2          159 FIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQ  238 (269)
T ss_dssp             HHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHH
T ss_pred             HHHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence            99999999999999999998888886655455677899999999999987788889999999999999999999999999


Q ss_pred             hhhcCCCchhhHH-HhhcCCcccccccc
Q 024613          238 HIYTGTGPIDNLI-AHLADPGHATVFAV  264 (265)
Q Consensus       238 ~~vTG~gPl~nL~-~hladP~~~n~~~~  264 (265)
                      +++||+||++||. +||+|| |||||++
T Consensus       239 ~~~tg~g~l~~l~~~HladP-~~n~~~~  265 (269)
T 2wsc_2          239 HIYTGTGPIDNLFAAHLADP-HATIFAA  265 (269)
T ss_dssp             HHHTTTCSSCCCSCCCCCCS-CCCCCSS
T ss_pred             HHhcCCChHHHHHHHHhcCc-ccchhhh
Confidence            9999999999999 999999 9999986
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 265
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 5e-63
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  195 bits (496), Expect = 5e-63
 Identities = 80/207 (38%), Positives = 104/207 (50%), Gaps = 6/207 (2%)

Query: 61  PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAG 118
           P+R  +        P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G
Sbjct: 6   PDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 65

Query: 119 IFIPELLTKLGI-LNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWA-DIIKPGCV 176
              PELL + G+      W+ AG   +            +    +    WA  +I  G V
Sbjct: 66  CVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV 125

Query: 177 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 236
               I         D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + 
Sbjct: 126 EGYRIAGGPLGEVVDPLYPGG-SFDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 183

Query: 237 QHIYTGTGPIDNLIAHLADPGHATVFA 263
           Q I TG GP++NL  HLADP +   + 
Sbjct: 184 QAIVTGKGPLENLADHLADPVNNNAWN 210

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 100.0
d1rwta_ 218 Chlorophyll a-b binding protein {Spinach (Spinacia 99.52
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=1.7e-63  Score=439.86  Aligned_cols=192  Identities=43%  Similarity=0.831  Sum_probs=157.3

Q ss_pred             cCcCCCCCCCCCC--CCCCCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCC-CC
Q 024613           56 AAAADPNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LN  132 (265)
Q Consensus        56 ~~~~~~~r~~~~p--~~~~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~-l~  132 (265)
                      ++|||+||++|+|  ..++|+||||++|||||||||||++|+++++|+||+|||||||||||++|+++||++++.+. +.
T Consensus         1 ~~~~~~~r~~~~~~~~~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~~~~~   80 (218)
T d1rwta_           1 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG   80 (218)
T ss_dssp             CTTSSTTCCCTTGGGGCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCS
T ss_pred             CCCCCCCCcccCCccccCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCCCCCC
Confidence            4699999999997  56789999999999999999999999999999999999999999999999999999987765 44


Q ss_pred             CCcccccCc-------cccc--------cchhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCC
Q 024613          133 TPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG  197 (265)
Q Consensus       133 ~~~w~~ag~-------~~~~--------~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd  197 (265)
                      ...|+.++.       ..++        ......+.+++.+++.+|..+....  +       .     ....+..|||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~--~-------~-----~~~~~~~~~~g  146 (218)
T d1rwta_          81 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG--P-------L-----GEVVDPLYPGG  146 (218)
T ss_dssp             CCSHHHHGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCB--T-------T-----BCCSSSSCCCG
T ss_pred             CcccccccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCC--C-------c-----ccccCCCCCCC
Confidence            445554322       1111        1122233445667888998775321  0       0     11234568887


Q ss_pred             CCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhhHHHhhcCCccccccc
Q 024613          198 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA  263 (265)
Q Consensus       198 ~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~  263 (265)
                       +||||++. +++|+++++|+|||||||||||||+||++|+++||++|++||.+|++||+|||||+
T Consensus       147 -~fdPlg~~-~~~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~P~~~n~~~  210 (218)
T d1rwta_         147 -SFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWN  210 (218)
T ss_dssp             -GGCTTCTT-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHCTTTSSGGG
T ss_pred             -CccccccC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcCchhhhHHH
Confidence             49999997 59999999999999999999999999999999999999999999999999999985
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure