Citrus Sinensis ID: 024637

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSITRKITEKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcHcccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccccccccEEEEcccccccHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHEEEEEEEcccHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHcccccccccHHHHHcc
Coil and Loop (DISEMBL)
mafvnqtklppgilvsdKAIKENEESNLLRDTHMLSITRKITEKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSklssgdskcgskvlhvdkskdnslYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAtiyapeiyptparttgfgvasslgkvggmVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASsllfpfetmgRELKDTVDAIES
Flexible Loop (DISEMBL)
mafvnqtklppgilvsdKAIKENeesnllrdthmlSITRKITEKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVlhvdkskdnsLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASsllfpfetmgrELKDTVDAIES
Low Complexity Region (SEG)
MAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSITRKITEKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
Disordered region (IsUnstruct)
*****************************RDTHMLSITRKITEKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS***KCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG************
Disordered Region (DISOPRED)
MAFVN**KLPPGILVSDKAI********************************FMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGREL*********
Disordered Region (DISEMBL)
MAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSITRKITEKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
Disordered Region (DISPRO)
***VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSITRKIT*KLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVD**ES
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSITRKITEKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q940M4	500	Organic cation/carnitine	yes	no	0.984	0.522	0.481	1e-65
Q9Z2I7	548	Synaptic vesicle 2-relate	yes	no	0.743	0.359	0.371	2e-29
Q5R5T8	548	Synaptic vesicle 2-relate	yes	no	0.750	0.363	0.378	2e-29
Q8N4V2	548	Synaptic vesicle 2-relate	yes	no	0.750	0.363	0.378	2e-29
Q8BFT9	548	Synaptic vesicle 2-relate	yes	no	0.743	0.359	0.366	2e-29
Q1JP63	548	Synaptic vesicle 2-relate	yes	no	0.743	0.359	0.366	1e-28
Q2XWK0	548	Synaptic vesicle 2-relate	N/A	no	0.769	0.372	0.355	7e-28
P30638	520	Putative transporter ZK63	yes	no	0.879	0.448	0.295	8e-28
Q6PDF3	494	Putative transporter SVOP	no	no	0.822	0.441	0.295	9e-20
Q1LVS8	506	Putative transporter SVOP	no	no	0.758	0.397	0.302	1e-19

>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 131/272 (48%), Positives = 184/272 (67%), Gaps = 11/272 (4%)

Query: 1   MAFVNQTKLPPGILVSDKAIKENEESNL-LRDTHML---------SITRKITEKLKSGFS 50
           +A +N+T+LPPG+L S+   +  E  N+   +TH+L         ++++ + +  K    
Sbjct: 221 IARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADKEPGF 280

Query: 51  SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSL 110
           S   L S  L++ TLLLWV+FF N F+YYG VLLT++L++  ++C      +  S D + 
Sbjct: 281 SLLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVN- 339

Query: 111 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFG 170
           Y DVFIAS AE PGL++SA +VD++GRK SM  M  + CIFLLPL+ HQS  +TT+LLFG
Sbjct: 340 YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFG 399

Query: 171 VRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAV 230
            R+C++   TV  IYAPEIYPT  RTTG GV SS+G++GG++CPLVAVGLV  CH  +AV
Sbjct: 400 GRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCHQTIAV 459

Query: 231 ILFEVVFVLAIASSLLFPFETMGRELKDTVDA 262
           +LFEVV +++     LFPFET GR+L D++ A
Sbjct: 460 LLFEVVILVSGICVCLFPFETSGRDLTDSISA 491

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 24/221 (10%)

Query: 55  LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKL-SSGD------------SKCGSKVLH 101
           LF+     TTLLLW ++F+N FSYYG VLLT++L  +GD            +KC     +
Sbjct: 308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query: 102 VDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQ 159
           + K      Y+D+   +L+E PG++++  ++D++GRK +M L FV  S C  LL +   +
Sbjct: 368 LSKED----YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGR 423

Query: 160 SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA-V 218
           +  V TLLLF  R  ++G    A +Y PE+YPT  R  G G  S + +VG ++ P +A V
Sbjct: 424 N--VLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQV 481

Query: 219 GLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
            L +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct: 482 MLESSVYLTLAV--YSGCCLLAALASCFLPIETKGRALQES 520

Rattus norvegicus (taxid: 10116)

>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 126/219 (57%), Gaps = 20/219 (9%)

Query: 55  LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCG--SKVLHVDK-------- 104
           LF+     TTLLLW ++F+N FSYYG VLLT++L      CG  S+   V+         
Sbjct: 308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEY 367

Query: 105 -SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSA 161
            S+++  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++ 
Sbjct: 368 LSEED--YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRN- 424

Query: 162 VVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA-VGL 220
            V TLLLF  R  ++G    A +Y PE+YPT  R  G G  S + +VG ++ P +A V L
Sbjct: 425 -VLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVML 483

Query: 221 VTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
            +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct: 484 ESSVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Pongo abelii (taxid: 9601)

>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 126/219 (57%), Gaps = 20/219 (9%)

Query: 55  LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCG--SKVLHVDK-------- 104
           LF+     TTLLLW ++F+N FSYYG VLLT++L      CG  S+   V+         
Sbjct: 308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEY 367

Query: 105 -SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSA 161
            S+++  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++ 
Sbjct: 368 LSEED--YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRN- 424

Query: 162 VVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA-VGL 220
            V TLLLF  R  ++G    A +Y PE+YPT  R  G G  S + +VG ++ P +A V L
Sbjct: 425 -VLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVML 483

Query: 221 VTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
            +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct: 484 ESSVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Homo sapiens (taxid: 9606)

>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 24/221 (10%)

Query: 55  LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKL-SSGD------------SKCGSKVLH 101
           LF+     TTLLLW ++F+N FSYYG VLLT++L  +GD            +KC     +
Sbjct: 308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query: 102 VDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQ 159
           + K      Y+D+   +L+E PG++++  ++D++GRK +M L F+  S C  LL +   +
Sbjct: 368 LSKED----YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGR 423

Query: 160 SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA-V 218
           +  V TLLLF  R  ++G    A +Y PE+YPT  R  G G  S + +VG ++ P +A V
Sbjct: 424 N--VLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQV 481

Query: 219 GLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
            L +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct: 482 MLESSVYLTLAV--YSGCCLLAGVASCFLPIETKGRALQES 520

Mus musculus (taxid: 10090)

>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 24/221 (10%)

Query: 55  LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKL-SSGD------------SKCGSKVLH 101
           LF+     TTLLLW ++F+N FSYYG VLLT++L  +GD            +KC     +
Sbjct: 308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query: 102 VDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQ 159
           + +      Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   +
Sbjct: 368 LSEED----YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGR 423

Query: 160 SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA-V 218
           + +  TLLLF  R  ++G    A +Y PE+YPT  R  G G  S + +VG ++ P +A V
Sbjct: 424 NML--TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQV 481

Query: 219 GLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
            L +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct: 482 MLESSVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Bos taurus (taxid: 9913)

>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1

 Score =  124 bits (311), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 116/214 (54%), Gaps = 10/214 (4%)

Query: 55  LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKL-SSGDSKCGSKVLHVDKSKDN----- 108
           LFS +   TTLLLW ++F+N FSYYG VLLT++L  +GD    S      K K +     
Sbjct: 308 LFSPQFRCTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEY 367

Query: 109 ---SLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTT 165
                Y D+   +L+E PGL+++  I+D++GRK +M + F+      L L       V T
Sbjct: 368 LTVEDYTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLT 427

Query: 166 LLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH 225
           + LF  R  ++G    A +Y PE+YPT  R  G G  S + +VG ++ P +A  ++ S  
Sbjct: 428 VFLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES-S 486

Query: 226 LRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
           + L V+++    VLA  +S   P ET GR L+++
Sbjct: 487 IYLTVLVYSGCCVLAAVASCFLPIETKGRGLQES 520

Xenopus laevis (taxid: 8355)

>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 124/264 (46%), Gaps = 31/264 (11%)

Query: 2   AFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSITRKITEKLKSGFSSFFMLFSRKLI 61
           A +N+ +LP G LVS          ++                          L S  L 
Sbjct: 281 ARMNRVQLPTGRLVSSTKAGSESRGDIAN------------------------LLSPDLR 316

Query: 62  RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKV------LHVDKSKDNSLYVDVF 115
           +TT+LLW ++    FSYYG VL T+ L     +C   +      + V +    S Y D+ 
Sbjct: 317 KTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGLFSNGTQMEVCQPLTRSDYFDLL 376

Query: 116 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCV 175
             +LAE PGLI++ +I++  GRK +M L +    IF   L F       T+L+F  R  +
Sbjct: 377 STTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFI 436

Query: 176 TGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEV 235
           +G    A +Y PE+YPT  R  G G  S++ ++G +V P +A  + +   L L + ++  
Sbjct: 437 SGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTPFIA-QVASEKSLSLPIGIYGT 495

Query: 236 VFVLAIASSLLFPFETMGRELKDT 259
             +L + +SL  P ET GR++ D+
Sbjct: 496 AAILGLIASLSLPIETKGRQMMDS 519

Caenorhabditis elegans (taxid: 6239)

>sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1

 Score = 97.4 bits (241), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 19/237 (8%)

Query: 40  KITEKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKV 99
           ++ E +      F  L   K +RTTL +W+++    F+YYG +L +++L   D  CGSK 
Sbjct: 257 QLVEPILEKRGRFADLLDSKYLRTTLQIWIIWLGISFAYYGVILASAELLERDLVCGSKS 316

Query: 100 LH----VDKSKDN--------------SLYVDVFIASLAELPGLILSAIIVDKIGRKLSM 141
                 V+ + D+              S Y  + I++L E+    L+ + ++ +GR+LS+
Sbjct: 317 ESEPEVVETTGDSGEGLSPCYCHIFAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSL 376

Query: 142 VLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGV 201
            +      +F L L    S+      LF +R  V        IY  E+YPTP R  G G 
Sbjct: 377 SITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRAIGMGT 436

Query: 202 ASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD 258
           + SL ++G MV P ++  L+++  L  A+ LF  V V+   S+   P ET GR L+ 
Sbjct: 437 SGSLCRIGAMVAPFISQVLMSASFLG-ALCLFSSVCVVCAISAFTLPIETKGRALQQ 492

Mus musculus (taxid: 10090)

>sp|Q1LVS8|SVOPL_DANRE Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 14/215 (6%)

Query: 55  LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGS------KVLHVDKSK-- 106
           L S    RT+LLLW  +F   FSYYG+VL +S+L   +  C +      ++ H+ +    
Sbjct: 289 LISSAFRRTSLLLWYSWFVASFSYYGSVLSSSELLEKNLLCVTDPDLEHQIKHIQEETLC 348

Query: 107 -----DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSA 161
                ++  Y  + I+ L E+  + L+ I+++ +GRK SMV++ + +  F + +    + 
Sbjct: 349 YCIPFNSDDYQTLLISCLGEVALIPLNIILLNIVGRKYSMVILLLLSAFFFMLVNICTTM 408

Query: 162 VVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLV 221
           +  T+LLF +R  V+    V  IY  E+YPT  R+ G G  +S  ++GGM+ P +A  L+
Sbjct: 409 LGFTILLFLLRSVVSMNFNVVYIYTAEVYPTSVRSIGMGFCTSFSRIGGMIAPFIAQVLM 468

Query: 222 TSCHLRLAVILFEVVFVLAIASSLLFPFETMGREL 256
           +   + LA+  F    ++        P ET GR L
Sbjct: 469 SK-SVILALSPFATACIICAIGVFFLPIETRGRAL 502

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
224118680	492	predicted protein [Populus trichocarpa]	0.988	0.532	0.656	4e-88
224118546	493	predicted protein [Populus trichocarpa]	0.992	0.533	0.619	2e-83
255574249	497	sugar transporter, putative [Ricinus com	1.0	0.533	0.605	8e-78
225443470	495	PREDICTED: synaptic vesicle 2-related pr	0.996	0.533	0.568	2e-77
255573803	498	sugar transporter, putative [Ricinus com	0.996	0.530	0.587	8e-77
383932368	482	MFS [Gossypium hirsutum]	0.977	0.537	0.603	1e-72
147767934	461	hypothetical protein VITISV_042940 [Viti	0.916	0.527	0.568	7e-71
357467655	499	Synaptic vesicle 2-related protein [Medi	0.981	0.521	0.552	1e-70
224118676	492	predicted protein [Populus trichocarpa]	0.973	0.524	0.564	7e-68
297829842	500	hypothetical protein ARALYDRAFT_318077 [	0.984	0.522	0.485	2e-66

>gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (846), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 172/262 (65%), Positives = 206/262 (78%)

Query: 1   MAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSITRKITEKLKSGFSSFFMLFSRKL 60
           +A +NQ+KLPPG+LVSD  I  +EES   + T +LS TR +    KSGFSSF MLFS KL
Sbjct: 222 IAQLNQSKLPPGMLVSDSTIGLDEESAPSKYTPLLSSTRNLVSDFKSGFSSFVMLFSSKL 281

Query: 61  IRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLA 120
           IRTTLLLW+LFF N FSYYG +LLTS+LSS + KC S VL  +  +D+SLY++VFI SLA
Sbjct: 282 IRTTLLLWLLFFGNAFSYYGIILLTSELSSEEGKCASTVLRSENLQDDSLYINVFITSLA 341

Query: 121 ELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTIT 180
           ELPG++LSAIIVD+ GRKLSM  MFV ACIFLLPLVFHQ A +TT LLFG RMC  GT T
Sbjct: 342 ELPGILLSAIIVDRFGRKLSMAFMFVLACIFLLPLVFHQHATLTTALLFGARMCAIGTFT 401

Query: 181 VATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA 240
           VA IYAPE+YPT  R TG GVA+++G++GGMVCPLVAVGLV  CHL+ A+ILFEVV V++
Sbjct: 402 VAAIYAPEVYPTVIRATGAGVANAVGRIGGMVCPLVAVGLVAGCHLKEAIILFEVVIVIS 461

Query: 241 IASSLLFPFETMGRELKDTVDA 262
           +   LLFPFET GREL D++ A
Sbjct: 462 VVCVLLFPFETSGRELSDSLAA 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 163/263 (61%), Positives = 207/263 (78%)

Query: 1   MAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSITRKITEKLKSGFSSFFMLFSRKL 60
           +A +NQ++LPPG+LV D  + + E+S   + T +LS TRK+    KS FSSFFMLFS  L
Sbjct: 221 IALLNQSELPPGMLVPDSTVGQEEKSAPSKYTPLLSSTRKVIVDFKSVFSSFFMLFSSTL 280

Query: 61  IRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLA 120
           I+TTLLLWVL F NVFSYYG +LLTS+LSS   KCGS +L  +  +++SLY++VF+ SLA
Sbjct: 281 IQTTLLLWVLLFGNVFSYYGIILLTSELSSQQGKCGSTILSSENLQNDSLYINVFVTSLA 340

Query: 121 ELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTIT 180
           ELPGL+LSAIIVD++GRKLSM LM V  CIFL PL+F+ SA +TT +LFG RMCV G+ T
Sbjct: 341 ELPGLLLSAIIVDRLGRKLSMALMLVLGCIFLFPLLFNVSANLTTAMLFGARMCVMGSFT 400

Query: 181 VATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA 240
           +AT+YAPE+YPT  R TG GVASS+G++GGM+CPLVAVGLVT C+L  A+ILFEVV  ++
Sbjct: 401 IATLYAPELYPTAVRATGAGVASSVGRIGGMICPLVAVGLVTGCYLTEAIILFEVVMAIS 460

Query: 241 IASSLLFPFETMGRELKDTVDAI 263
             SSLLFPFET G+EL D+VD +
Sbjct: 461 AFSSLLFPFETKGQELSDSVDHV 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis]

 Score =  296 bits (757), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 161/266 (60%), Positives = 201/266 (75%), Gaps = 1/266 (0%)

Query: 1   MAFVNQTKLPPGILVSDKAIKENEE-SNLLRDTHMLSITRKITEKLKSGFSSFFMLFSRK 59
           +A VNQ +LPPG+LVS   IKE+EE S L +   +L + R+    LKSGFSSF +LFS  
Sbjct: 225 IALVNQKELPPGMLVSYGKIKEDEEISALEQKRSLLFMDREKISTLKSGFSSFSLLFSSN 284

Query: 60  LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASL 119
           LI+TTLLLWVLFF NVFSYYG +LLTS+LSS +SKC   +LH    +D SL++DV I S 
Sbjct: 285 LIQTTLLLWVLFFGNVFSYYGIILLTSQLSSSESKCSLTILHSQNPQDESLFMDVLITSF 344

Query: 120 AELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTI 179
           AELPG++LSA++VD+ GRKLSM +MF+ A IFLLPLV  QS ++TT LLFG RM   GT 
Sbjct: 345 AELPGILLSAMMVDRFGRKLSMAIMFIFAWIFLLPLVSRQSDILTTGLLFGARMFSLGTF 404

Query: 180 TVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVL 239
           TVA+IYAPE+YPT  R+TG G AS++G++GGMVCPLVAV LV++CH + A+ILFEVV  +
Sbjct: 405 TVASIYAPELYPTSIRSTGAGTASAVGRIGGMVCPLVAVALVSNCHFKAAIILFEVVIAI 464

Query: 240 AIASSLLFPFETMGRELKDTVDAIES 265
            +   LLFPFET GREL D + A ES
Sbjct: 465 TVVCILLFPFETSGRELSDRLAAPES 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443470|ref|XP_002273636.1| PREDICTED: synaptic vesicle 2-related protein [Vitis vinifera] gi|297735684|emb|CBI18371.3| unnamed protein product [Vitis vinifera]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/271 (56%), Positives = 189/271 (69%), Gaps = 7/271 (2%)

Query: 1   MAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSI------TRKITEKLKSGFSSFFM 54
           +A +N+ +LPPGILVSD  +   E SN   D  +LS       + K  +    G SS FM
Sbjct: 221 IARMNRAELPPGILVSDHQVGVPENSNPSEDMKLLSPEADSGSSHKDIDSNMGGISSLFM 280

Query: 55  LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDV 114
           L S KL+R+TLLLW++FF N FSYYG VLLTS+L++  +KCG   L  +K++D + Y DV
Sbjct: 281 LLSPKLLRSTLLLWMVFFGNAFSYYGLVLLTSELNNEQNKCGVAELQSEKTQDIN-YKDV 339

Query: 115 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMC 174
           FI S AE PGL+LSA  VD +GRKLSM  MF   CIFLLPLVFHQ   +TT LLFG R+C
Sbjct: 340 FITSFAEFPGLLLSAATVDILGRKLSMSAMFFLCCIFLLPLVFHQPQGLTTALLFGARIC 399

Query: 175 VTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFE 234
           +T T TV  IYAPEIYPT  RTTG GVASS+G++GGM+CPLVAVGLV  CH   AVILFE
Sbjct: 400 ITVTFTVVYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQAAAVILFE 459

Query: 235 VVFVLAIASSLLFPFETMGRELKDTVDAIES 265
           +V  ++    +LFPFET GRELKDT+ + E 
Sbjct: 460 IVIFISGICVILFPFETKGRELKDTLSSSEQ 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis]

 Score =  292 bits (748), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 155/264 (58%), Positives = 192/264 (72%)

Query: 1   MAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSITRKITEKLKSGFSSFFMLFSRKL 60
           +A +NQ KLP GILVSD     +EES+ L    +LS+ RK     KS FSSFFMLFS +L
Sbjct: 227 IALLNQAKLPGGILVSDSTTGLDEESSSLSHQPLLSLARKRVSSFKSAFSSFFMLFSSRL 286

Query: 61  IRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLA 120
           I+TTLLLWVL+F N F YYG +LLTS+LS    +C S    ++  +D +LY+D+FI SLA
Sbjct: 287 IKTTLLLWVLYFGNSFLYYGIILLTSELSGRQDECRSATSSLENHQDENLYIDIFITSLA 346

Query: 121 ELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTIT 180
           ELPG+ILSAI VD+ GRK SM+ MFV+ACIFLLPLV HQSAV+ T  LFG RMC  GT T
Sbjct: 347 ELPGIILSAITVDRFGRKRSMIFMFVAACIFLLPLVSHQSAVLRTSFLFGARMCAIGTFT 406

Query: 181 VATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA 240
           +A IY PE+YPTP RTTG GVAS+ G++GGM+CPLVAVGLVT CH+   +I+FEVV  ++
Sbjct: 407 IACIYCPELYPTPVRTTGSGVASAAGRIGGMICPLVAVGLVTGCHVEAGIIVFEVVAAIS 466

Query: 241 IASSLLFPFETMGRELKDTVDAIE 264
               L FP+ET G EL D+V   +
Sbjct: 467 AICLLFFPYETKGCELSDSVGPFD 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 157/260 (60%), Positives = 192/260 (73%), Gaps = 1/260 (0%)

Query: 1   MAFVNQTKLPPGILVSDKAIKENEESNLLRDTH-MLSITRKITEKLKSGFSSFFMLFSRK 59
           +A VNQTKLPPG+LVS ++  ++EES    +T  +L    K T + KSGFSSFFMLFS K
Sbjct: 222 IASVNQTKLPPGVLVSGRSNDKDEESAPSENTAPLLPSLSKSTTQSKSGFSSFFMLFSSK 281

Query: 60  LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASL 119
           LIRTTLLLWVLFF + FSYYG +LLTSKLSSG S C   +      +D+ LY++ FI S+
Sbjct: 282 LIRTTLLLWVLFFGDSFSYYGIILLTSKLSSGQSTCFPSLQSNINPQDDGLYLNAFITSM 341

Query: 120 AELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTI 179
           AELPGL+LSAI+VD++GRK SM +MF  A IFL PL+  Q AV+TT LLFG RM   GT 
Sbjct: 342 AELPGLLLSAILVDRVGRKHSMAIMFGLAFIFLTPLLIQQPAVLTTCLLFGARMNAMGTF 401

Query: 180 TVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVL 239
           TVA+IY+PE+YPT  RTTG GVAS++G++GGMVCPLVAVGLV  CH   AV LF V  V+
Sbjct: 402 TVASIYSPELYPTSVRTTGAGVASAIGRIGGMVCPLVAVGLVNECHQTAAVALFLVAIVV 461

Query: 240 AIASSLLFPFETMGRELKDT 259
           +I    LFP++T GREL DT
Sbjct: 462 SIVCIQLFPYDTKGRELSDT 481

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767934|emb|CAN64534.1| hypothetical protein VITISV_042940 [Vitis vinifera]

 Score =  273 bits (697), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 142/250 (56%), Positives = 175/250 (70%), Gaps = 7/250 (2%)

Query: 22  ENEESNLLRDTHMLS------ITRKITEKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANV 75
           +   +  L+D  +LS       + K  +    G SS FML S KL+R+TLLLW++FF N 
Sbjct: 208 KGRTTEALKDMKLLSPEADSGSSHKDIDSNMGGISSLFMLLSPKLLRSTLLLWMVFFGNA 267

Query: 76  FSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI 135
           FSYYG VLLTS+L++G +KCG   L  +K++D + Y DVFI S AE PGL+LSA  VD +
Sbjct: 268 FSYYGLVLLTSELNNGQNKCGVAELQSEKTQDIN-YKDVFITSFAEFPGLLLSAATVDIL 326

Query: 136 GRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPAR 195
           GRKLSM  MF   CIFLLPLVFHQ   +TT LLFG R+C+T T TV  IYAPEIYPT  R
Sbjct: 327 GRKLSMSAMFFLCCIFLLPLVFHQPQGLTTALLFGARICITVTFTVVYIYAPEIYPTSVR 386

Query: 196 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRE 255
           TTG GVASS+G++GGM+CPLVAVGLV  CH   AVILFE+V  ++    +LFPFET GRE
Sbjct: 387 TTGVGVASSVGRIGGMLCPLVAVGLVHGCHQAAAVILFEIVIFISGICVILFPFETKGRE 446

Query: 256 LKDTVDAIES 265
           LKDT+ + E 
Sbjct: 447 LKDTLSSSEQ 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467655|ref|XP_003604112.1| Synaptic vesicle 2-related protein [Medicago truncatula] gi|355505167|gb|AES86309.1| Synaptic vesicle 2-related protein [Medicago truncatula]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/268 (55%), Positives = 184/268 (68%), Gaps = 8/268 (2%)

Query: 4   VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSITRKITEKLKS------GFSSFFMLFS 57
           +N  KLP G+LVSD  I+  +  N   DT +LS  +   E  K       G SS  +L S
Sbjct: 230 LNGKKLPSGVLVSDNQIELQKIDNPSEDTVLLSPRKSEVESPKGMISNLGGISSLRVLLS 289

Query: 58  RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIA 117
            KL R+TLLLW +FF N FSYYG VLLTS+L   +SKC    L  +KS+D S Y  VFIA
Sbjct: 290 PKLSRSTLLLWAVFFGNAFSYYGLVLLTSELKR-NSKCIPDKLQTEKSQDVS-YKGVFIA 347

Query: 118 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTG 177
           S AELPGL+LSA+ VDK+GRKLSM +MF   CIFLLPL F+    +TT LLFG R+C+T 
Sbjct: 348 SFAELPGLLLSAVAVDKLGRKLSMSIMFFMCCIFLLPLTFYLPEDLTTGLLFGARICITV 407

Query: 178 TITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVF 237
           T T+  IYAPEIYPT  RTTG GVASS+G++GGM+CPLVAVGLV  CH   AV+LF +V 
Sbjct: 408 TFTIVYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQTAAVLLFIIVA 467

Query: 238 VLAIASSLLFPFETMGRELKDTVDAIES 265
           +++    + FPFETMG+EL+DTV +I+ 
Sbjct: 468 LVSGICVVFFPFETMGQELQDTVSSIKQ 495

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118676|ref|XP_002331420.1| predicted protein [Populus trichocarpa] gi|222873634|gb|EEF10765.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (671), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 148/262 (56%), Positives = 189/262 (72%), Gaps = 4/262 (1%)

Query: 1   MAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSITRKITEKLKSGFSSFFMLFSRKL 60
           +A +NQ+KLPPG LV D  I  +EES     T +LS T K+    +SGF SF MLFS KL
Sbjct: 232 IALLNQSKLPPGELVPDSTIGLDEESATSEYTPLLSTTEKMDLDFRSGFQSFLMLFSSKL 291

Query: 61  IRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKD-NSLYVDVFIASL 119
           IRTTLLLW L F NVFSYY  +LLTS+LSS  S+CGS +L   KS++ +SLY++VFI++L
Sbjct: 292 IRTTLLLWELLFGNVFSYYAIILLTSELSSWQSRCGSNLL---KSENPDSLYINVFISNL 348

Query: 120 AELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTI 179
           AELPG++LSA IVD+IGRKL++   FV A IFLLPLV+HQSA +T   LFG RM      
Sbjct: 349 AELPGILLSATIVDRIGRKLTVAFTFVLAGIFLLPLVYHQSATLTMSFLFGARMSTKAAY 408

Query: 180 TVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVL 239
           +VATIY  E+YPT  R TG G A++ GKVGGM+CPLVAVGLVTSC +  A+ILFEV+  +
Sbjct: 409 SVATIYVQELYPTSVRATGAGAANAAGKVGGMICPLVAVGLVTSCQITEAIILFEVLMAI 468

Query: 240 AIASSLLFPFETMGRELKDTVD 261
           +    +  P +T G++L D++D
Sbjct: 469 SAVCVMFIPVDTKGQKLCDSID 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829842|ref|XP_002882803.1| hypothetical protein ARALYDRAFT_318077 [Arabidopsis lyrata subsp. lyrata] gi|297328643|gb|EFH59062.1| hypothetical protein ARALYDRAFT_318077 [Arabidopsis lyrata subsp. lyrata]

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 132/272 (48%), Positives = 184/272 (67%), Gaps = 11/272 (4%)

Query: 1   MAFVNQTKLPPGILVSDKAIKENEESNL-LRDTHML---------SITRKITEKLKSGFS 50
           +A +N T+LPPG+L S+   +  +  NL   +TH+L         ++++ + +  K    
Sbjct: 221 IARMNGTQLPPGVLSSELETELEDNKNLPTENTHLLKPGEIGEAVAVSKIVLKADKEPAF 280

Query: 51  SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSL 110
           S   L S  LI+ TLLLW++FF N F+YYG VLLT++L++  ++C      +  S D + 
Sbjct: 281 SLLALLSPTLIKRTLLLWIVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLGNSNDVN- 339

Query: 111 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFG 170
           Y DVFIAS AE PGL++SA +VD++GRK+SM  M  + CIFLLPL+ HQS  +TT LLFG
Sbjct: 340 YKDVFIASFAEFPGLLISAAMVDRLGRKVSMASMLFTCCIFLLPLLSHQSPFITTALLFG 399

Query: 171 VRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAV 230
            R+C++   TV  IYAPEIYPT  RTTG GVASS+G++GG++CPLVAVGLV  CH  +AV
Sbjct: 400 GRICISAAFTVVYIYAPEIYPTAVRTTGVGVASSVGRIGGILCPLVAVGLVHGCHQTIAV 459

Query: 231 ILFEVVFVLAIASSLLFPFETMGRELKDTVDA 262
           +LFEVV +++     LFPFET GR+L D++ A
Sbjct: 460 LLFEVVILVSGICVCLFPFETSGRDLTDSISA 491

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2089270	500	NiaP "nicotinate transporter"	0.981	0.52	0.494	4.2e-63
WB|WBGene00014021	520	svop-1 [Caenorhabditis elegans	0.833	0.425	0.320	5e-31
UNIPROTKB|Q8N4V2	548	SVOP "Synaptic vesicle 2-relat	0.758	0.366	0.377	1.8e-29
RGD|620277	548	Svop "SV2 related protein" [Ra	0.750	0.363	0.374	3.1e-29
UNIPROTKB|F1LPX1	548	Svop "Synaptic vesicle 2-relat	0.750	0.363	0.374	3.1e-29
UNIPROTKB|Q9Z2I7	548	Svop "Synaptic vesicle 2-relat	0.750	0.363	0.374	3.1e-29
UNIPROTKB|F6XK47	483	SVOP "Uncharacterized protein"	0.758	0.416	0.368	5.9e-29
MGI|MGI:1915916	548	Svop "SV2 related protein" [Mu	0.750	0.363	0.369	6.7e-29
UNIPROTKB|F1RGB1	548	SVOP "Uncharacterized protein"	0.750	0.363	0.374	1.1e-28
UNIPROTKB|E2QZ16	548	SVOP "Uncharacterized protein"	0.758	0.366	0.368	1.4e-28

TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 135/273 (49%), Positives = 183/273 (67%)

Query:     1 MAFVNQTKLPPGILVSDKAIKENEESNL-LRDTHMLSI--------TRKITEKL--KSGF 49
             +A +N+T+LPPG+L S+   +  E  N+   +TH+L            KI  K   + GF
Sbjct:   221 IARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADKEPGF 280

Query:    50 SSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNS 109
             S    L S  L++ TLLLWV+FF N F+YYG VLLT++L++  ++C      +  S D +
Sbjct:   281 S-LLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVN 339

Query:   110 LYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLF 169
              Y DVFIAS AE PGL++SA +VD++GRK SM  M  + CIFLLPL+ HQS  +TT+LLF
Sbjct:   340 -YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLF 398

Query:   170 GVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLA 229
             G R+C++   TV  IYAPEIYPT  RTTG GV SS+G++GG++CPLVAVGLV  CH  +A
Sbjct:   399 GGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCHQTIA 458

Query:   230 VILFEVVFVLAIASSLLFPFETMGRELKDTVDA 262
             V+LFEVV +++     LFPFET GR+L D++ A
Sbjct:   459 VLLFEVVILVSGICVCLFPFETSGRDLTDSISA 491

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0090416 "nicotinate transporter activity" evidence=IDA

GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA

GO:2001142 "nicotinate transport" evidence=IDA

GO:2001143 "N-methylnicotinate transport" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

WB|WBGene00014021 svop-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 324 (119.1 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
 Identities = 74/231 (32%), Positives = 118/231 (51%)

Query:    38 TRKITEKLKSGFSS---FFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSK 94
             T ++    K+G  S      L S  L +TT+LLW ++    FSYYG VL T+ L     +
Sbjct:   290 TGRLVSSTKAGSESRGDIANLLSPDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDE 349

Query:    95 CGSKV------LHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSA 148
             C   +      + V +    S Y D+   +LAE PGLI++ +I++  GRK +M L +   
Sbjct:   350 CHGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVF 409

Query:   149 CIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKV 208
              IF   L F       T+L+F  R  ++G    A +Y PE+YPT  R  G G  S++ ++
Sbjct:   410 AIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARI 469

Query:   209 GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
             G +V P +A  + +   L L + ++    +L + +SL  P ET GR++ D+
Sbjct:   470 GAIVTPFIAQ-VASEKSLSLPIGIYGTAAILGLIASLSLPIETKGRQMMDS 519

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)]

 Score = 331 (121.6 bits), Expect = 1.8e-29, P = 1.8e-29
 Identities = 82/217 (37%), Positives = 121/217 (55%)

Query:    55 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCG----SKVLHVDKSK---- 106
             LF+     TTLLLW ++F+N FSYYG VLLT++L      CG     K +    S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEY 367

Query:   107 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 163
                  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++  V
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRN--V 425

Query:   164 TTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA-VGLVT 222
              TLLLF  R  ++G    A +Y PE+YPT  R  G G  S + +VG ++ P +A V L +
Sbjct:   426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query:   223 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISS

RGD|620277 Svop "SV2 related protein" [Rattus norvegicus (taxid:10116)]

 Score = 329 (120.9 bits), Expect = 3.1e-29, P = 3.1e-29
 Identities = 82/219 (37%), Positives = 125/219 (57%)

Query:    55 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCG--SKVLHVDK-------- 104
             LF+     TTLLLW ++F+N FSYYG VLLT++L      C   S+   V+         
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   105 -SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSA 161
              SK++  Y+D+   +L+E PG++++  ++D++GRK +M L FV  S C  LL +   ++ 
Sbjct:   368 LSKED--YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRN- 424

Query:   162 VVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA-VGL 220
              V TLLLF  R  ++G    A +Y PE+YPT  R  G G  S + +VG ++ P +A V L
Sbjct:   425 -VLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVML 483

Query:   221 VTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
              +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   484 ESSVYLTLAV--YSGCCLLAALASCFLPIETKGRALQES 520

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

UNIPROTKB|F1LPX1 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 329 (120.9 bits), Expect = 3.1e-29, P = 3.1e-29
 Identities = 82/219 (37%), Positives = 125/219 (57%)

Query:    55 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCG--SKVLHVDK-------- 104
             LF+     TTLLLW ++F+N FSYYG VLLT++L      C   S+   V+         
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   105 -SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSA 161
              SK++  Y+D+   +L+E PG++++  ++D++GRK +M L FV  S C  LL +   ++ 
Sbjct:   368 LSKED--YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRN- 424

Query:   162 VVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA-VGL 220
              V TLLLF  R  ++G    A +Y PE+YPT  R  G G  S + +VG ++ P +A V L
Sbjct:   425 -VLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVML 483

Query:   221 VTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
              +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   484 ESSVYLTLAV--YSGCCLLAALASCFLPIETKGRALQES 520

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9Z2I7 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 329 (120.9 bits), Expect = 3.1e-29, P = 3.1e-29
 Identities = 82/219 (37%), Positives = 125/219 (57%)

Query:    55 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCG--SKVLHVDK-------- 104
             LF+     TTLLLW ++F+N FSYYG VLLT++L      C   S+   V+         
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   105 -SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSA 161
              SK++  Y+D+   +L+E PG++++  ++D++GRK +M L FV  S C  LL +   ++ 
Sbjct:   368 LSKED--YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRN- 424

Query:   162 VVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA-VGL 220
              V TLLLF  R  ++G    A +Y PE+YPT  R  G G  S + +VG ++ P +A V L
Sbjct:   425 -VLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVML 483

Query:   221 VTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
              +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   484 ESSVYLTLAV--YSGCCLLAALASCFLPIETKGRALQES 520

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 323 (118.8 bits), Expect = 5.9e-29, P = 5.9e-29
 Identities = 80/217 (36%), Positives = 120/217 (55%)

Query:    55 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCG----SKVLHVDKSK---- 106
             LF+     TTLLLW ++F+N FSYYG VLLT++L      C      K +    S     
Sbjct:   243 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 302

Query:   107 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 163
                  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++ + 
Sbjct:   303 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRNML- 361

Query:   164 TTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA-VGLVT 222
              TLLLF  R  ++G    A +Y PE+YPT  R  G G  S + +VG ++ P +A V L +
Sbjct:   362 -TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 420

Query:   223 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   421 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 455

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

MGI|MGI:1915916 Svop "SV2 related protein" [Mus musculus (taxid:10090)]

 Score = 326 (119.8 bits), Expect = 6.7e-29, P = 6.7e-29
 Identities = 81/219 (36%), Positives = 125/219 (57%)

Query:    55 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCG--SKVLHVDK-------- 104
             LF+     TTLLLW ++F+N FSYYG VLLT++L      C   S+   V+         
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   105 -SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSA 161
              SK++  Y+D+   +L+E PG++++  ++D++GRK +M L F+  S C  LL +   ++ 
Sbjct:   368 LSKED--YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRN- 424

Query:   162 VVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA-VGL 220
              V TLLLF  R  ++G    A +Y PE+YPT  R  G G  S + +VG ++ P +A V L
Sbjct:   425 -VLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVML 483

Query:   221 VTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
              +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   484 ESSVYLTLAV--YSGCCLLAGVASCFLPIETKGRALQES 520

GO:0006810 "transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 324 (119.1 bits), Expect = 1.1e-28, P = 1.1e-28
 Identities = 82/219 (37%), Positives = 125/219 (57%)

Query:    55 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCG--SKVLHVDK-------- 104
             LF+     TTLLLW ++F+N FSYYG VLLT++L      C   S+   V+         
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   105 -SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSA 161
              SK++  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++ 
Sbjct:   368 LSKED--YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNM 425

Query:   162 VVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA-VGL 220
             +  TLLLF  R  ++G    A +Y PE+YPT  R  G G  S + +VG ++ P +A V L
Sbjct:   426 L--TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVML 483

Query:   221 VTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
              +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   484 ESSVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 323 (118.8 bits), Expect = 1.4e-28, P = 1.4e-28
 Identities = 80/217 (36%), Positives = 120/217 (55%)

Query:    55 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCG----SKVLHVDKSK---- 106
             LF+     TTLLLW ++F+N FSYYG VLLT++L      C      K +    S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 367

Query:   107 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 163
                  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++ + 
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRNML- 426

Query:   164 TTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA-VGLVT 222
              TLLLF  R  ++G    A +Y PE+YPT  R  G G  S + +VG ++ P +A V L +
Sbjct:   427 -TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query:   223 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_164000007 hypothetical protein (492 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	4e-31
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-16
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-11
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	5e-11
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	3e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-06
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	1e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-06
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	3e-06
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	7e-06
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	4e-04
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	0.001
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	0.003

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  120 bits (302), Expect = 4e-31
 Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 28/230 (12%)

Query: 34  MLSITRKITEKLKSGFSSFFMLF-SRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGD 92
            LS+ + ++   K    SF  LF +  L +TTL L +L+F   FSYYG VL    L    
Sbjct: 300 SLSLEKDLSSSKK--QYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGG-- 355

Query: 93  SKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFL 152
                           ++Y+D+FI+ L ELP  +++ +++D++GR+ +M    + A + L
Sbjct: 356 ----------------NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVAL 399

Query: 153 LPLVF---HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVG 209
           L L+F       + T L + G +  +T    +  +Y  E+YPT  R  G GV S++ +VG
Sbjct: 400 LLLLFVPVDLYFLRTALAVLG-KFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVG 458

Query: 210 GMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 259
            ++ P +    +    L L ++LF  + +LA   +L  P ET G  L +T
Sbjct: 459 SIISPFLV--YLGEKWLFLPLVLFGGLALLAGILTLFLP-ETKGVPLPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 13/169 (7%)

Query: 50  SSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNS 109
           S F  LF  K  R T+LLW+L+F  +   Y       KL        S            
Sbjct: 238 SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATG------- 290

Query: 110 LYVDVFIASLAELPGLILSAIIVDKIGRKLSMVL-MFVSACIFLLPLVFHQSAVVTTLLL 168
                 + +   + G I+   + D++G +++ +L +  +    L+        ++  L  
Sbjct: 291 ----GALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGA 346

Query: 169 FGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA 217
                 V G  +         YPT  R TG G A  +G++G ++ P++A
Sbjct: 347 I-AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 11/203 (5%)

Query: 47  SGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSK 106
           +       L    L+R  LLL + FF   F YYG +                +  V    
Sbjct: 160 AILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLY----------LQEVLGLS 209

Query: 107 DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLS-MVLMFVSACIFLLPLVFHQSAVVTT 165
                + + +  L  + G +L  ++ D++GR+   +++  + A + LL L    S  +  
Sbjct: 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269

Query: 166 LLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH 225
           + L  +   +          A E+ P  AR T  G+ ++ G +GG + PL+A  L+ +  
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329

Query: 226 LRLAVILFEVVFVLAIASSLLFP 248
                ++   + +LA    LL P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 62.3 bits (151), Expect = 5e-11
 Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 13/141 (9%)

Query: 110 LYVDVFIASLAELPGLILSAIIVDKIGRKL----SMVLMFVSACIFLLPLVFHQSAVVTT 165
           +Y   F+ +LA LPG I+SA+++DKIGR      SMVL  +S   F L     +SA++  
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISC--FFLSFGNSESAMIAL 654

Query: 166 LLLF-GVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC 224
           L LF G+ +     + V T+   E+YP+  R T FG  ++L K   ++  L+    V   
Sbjct: 655 LCLFGGLSIAAWNALDVLTV---ELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT 711

Query: 225 HLRLAVILFEVVFVLAIASSL 245
             + A ILF     LA    L
Sbjct: 712 --KAAPILFASA-ALACGGLL 729

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 15/165 (9%)

Query: 55  LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDK--SKDNSLYV 112
           LF       TLLLW+ +F  +   Y    L + L S         L V +  S+  +  V
Sbjct: 213 LFGEGRATATLLLWISYFFTLIVLY---FLLNWLPS---------LLVGQGLSRSQAGLV 260

Query: 113 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVR 172
            +   ++    G +L   ++D++  +  ++L++      L  L    S     L  F   
Sbjct: 261 QIAF-NIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAG 319

Query: 173 MCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA 217
           + V G  +V    AP  YPT  R TG G A ++G++G M  PL+A
Sbjct: 320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364

Length = 406

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 28/140 (20%), Positives = 54/140 (38%)

Query: 114 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRM 173
           V   SL    G +L+  + D+ GR+  ++L  +   +  L L F  S  +  +  F + +
Sbjct: 40  VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGL 99

Query: 174 CVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF 233
                   A     E +P   R    G+ S+   +G ++ PL+   L  S   R   ++ 
Sbjct: 100 GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159

Query: 234 EVVFVLAIASSLLFPFETMG 253
            ++ +L     L      + 
Sbjct: 160 AILGLLLALLLLFLLRLLLL 179

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 127 LSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMC----VTGTITVA 182
           LS  + D+IGR+  +++  V A +  +PL+       +  L F + +             
Sbjct: 274 LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPM 333

Query: 183 TIYAPEIYPTPARTTGFGVASSLGKV-GGMVCPLVAVGLVTS 223
             + PE++PT  R TG  +A +L     G   P +A  LV  
Sbjct: 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 26/134 (19%), Positives = 54/134 (40%)

Query: 114 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRM 173
           +   SL       L+  + D+ GR+  +++  +   + LL L+F  S  +  +L     +
Sbjct: 38  LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97

Query: 174 CVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF 233
                   A     + +P   R    G+ S+   +G  + PL+   L +    R A ++ 
Sbjct: 98  GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLIL 157

Query: 234 EVVFVLAIASSLLF 247
            ++ +LA   + L 
Sbjct: 158 AILALLAAVLAALL 171

Length = 346

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 4/141 (2%)

Query: 116 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--HQSAVVTTLLLFGVRM 173
            A+   + G I+  +  D+IG K +  +  + + +F+ PL      + ++    LFG+  
Sbjct: 274 AAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMA 333

Query: 174 CVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF 233
              G   +   +  + +P   R  G G+  +L    G    + A  L     + L   L 
Sbjct: 334 TNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL--GITMGLGAALT 391

Query: 234 EVVFVLAIASSLLFPFETMGR 254
            +V        L+       R
Sbjct: 392 FIVAFWTATILLIIGLSIPDR 412

Length = 426

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 31/239 (12%)

Query: 43  EKLKSGFSSFFMLFSR----KLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS--GDSKCG 96
           E  K+ +S FF  F +    K +  T   W  F  ++ ++YG  L    + S  G S   
Sbjct: 268 EVPKASWSDFFTHFFKWRHGKHLLGTAGSW--FLLDI-AFYGVNLNQKVILSAIGYSPPA 324

Query: 97  SKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV 156
           +     ++    ++  ++ IA    +PG  ++  +VD IGRK   ++ F    +    L 
Sbjct: 325 ATNNAYEELYKTAV-GNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLG 383

Query: 157 F-------HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVG 209
           F       H    +  L  F       G      I   E++PT  R+T  G++++ GK G
Sbjct: 384 FAYNHLSTHGFLAIYVLAQFFANF---GPNATTFIVPGEVFPTRYRSTAHGISAASGKAG 440

Query: 210 GMVCPL----------VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD 258
            ++                G  T   +   + +F +   L I  +LL P ET G+ L++
Sbjct: 441 AIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIP-ETKGKSLEE 498

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 16/210 (7%)

Query: 48  GFSSFFMLFSRKLIRTTLLLWV-LFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSK 106
            F SF +  S K   T ++L V + FA ++S+    LL + L +         L  D   
Sbjct: 261 IFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD--------LGYDPHT 312

Query: 107 DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ--SAVVT 164
             ++   +F +      G  +   + D +G + + V   + + + ++P+      +  V 
Sbjct: 313 VANV---LFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVL 369

Query: 165 TLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC 224
            LLLF  +M   G   +        + T  R  G G   ++G +GG + P+  +G + + 
Sbjct: 370 GLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPI--LGALIAQ 427

Query: 225 HLRLAVILFEVVFVLAIASSLLFPFETMGR 254
            L L   L  + F L     LL   +   R
Sbjct: 428 RLDLGTALASLSFSLTFVVILLIGLDMPSR 457

Length = 496

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 126 ILSAIIVDKIGRK-------LSMVLMFVSACIFLLPLVFHQSA-----VVTTLLLFGVRM 173
            ++  +VD+ GR+         M + F+   + LL +   + A     V   L +    +
Sbjct: 304 FIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFAL 363

Query: 174 CVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF 233
                  V  +   E++P   R     +A++   +   +   +   +  +    +  ++F
Sbjct: 364 GWGP---VPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVF-LVF 419

Query: 234 EVVFVLAIASSLLFPFETMGREL 256
             + VL I     F  ET GR L
Sbjct: 420 AGLLVLFILFVFFFVPETKGRTL 442

Length = 449

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 114 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL-VFHQSAVVTTLLLFGVR 172
           V  +++  + G  +   + D +GR+ + V   ++  + ++P+     +  V  L LF  +
Sbjct: 280 VVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ 339

Query: 173 MCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLV 216
           M V G   +   +  E +PT  R  G G    LG +GG + P++
Sbjct: 340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII 383

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.95
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.9
KOG0569	485	consensus Permease of the major facilitator superf	99.87
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.85
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.85
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.84
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.83
PRK03545	390	putative arabinose transporter; Provisional	99.83
PRK10642	490	proline/glycine betaine transporter; Provisional	99.83
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.83
TIGR00898	505	2A0119 cation transport protein.	99.82
PRK11663	434	regulatory protein UhpC; Provisional	99.81
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.81
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.81
TIGR00891	405	2A0112 putative sialic acid transporter.	99.81
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.81
PLN00028	476	nitrate transmembrane transporter; Provisional	99.81
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.81
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.8
PRK10054	395	putative transporter; Provisional	99.8
PRK10504	471	putative transporter; Provisional	99.8
TIGR00895	398	2A0115 benzoate transport.	99.8
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.79
PRK03893	496	putative sialic acid transporter; Provisional	99.79
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.79
PRK12307	426	putative sialic acid transporter; Provisional	99.79
PRK03699	394	putative transporter; Provisional	99.79
PRK10091	382	MFS transport protein AraJ; Provisional	99.79
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.79
TIGR00893	399	2A0114 d-galactonate transporter.	99.78
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.78
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.78
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.78
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.78
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.78
TIGR00900	365	2A0121 H+ Antiporter protein.	99.78
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.78
PRK10489	417	enterobactin exporter EntS; Provisional	99.78
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.78
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.77
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.77
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.77
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.77
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.77
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.76
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.76
PRK09952	438	shikimate transporter; Provisional	99.76
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.75
PRK09874	408	drug efflux system protein MdtG; Provisional	99.75
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.75
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.75
PRK11043	401	putative transporter; Provisional	99.74
PRK05122	399	major facilitator superfamily transporter; Provisi	99.74
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.74
PRK10642	490	proline/glycine betaine transporter; Provisional	99.74
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.74
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.74
PRK12307	426	putative sialic acid transporter; Provisional	99.74
PRK12382	392	putative transporter; Provisional	99.74
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.74
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.74
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.73
PRK09528	420	lacY galactoside permease; Reviewed	99.73
PRK11663	434	regulatory protein UhpC; Provisional	99.73
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.73
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.73
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.72
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.72
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.72
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.72
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.72
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.72
PRK03633	381	putative MFS family transporter protein; Provision	99.72
PRK15075	434	citrate-proton symporter; Provisional	99.72
PRK09705	393	cynX putative cyanate transporter; Provisional	99.72
TIGR00893	399	2A0114 d-galactonate transporter.	99.71
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.71
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.71
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.71
PRK03699	394	putative transporter; Provisional	99.7
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.7
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.7
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.7
PRK09705	393	cynX putative cyanate transporter; Provisional	99.7
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.7
PRK10489	417	enterobactin exporter EntS; Provisional	99.69
PRK15075	434	citrate-proton symporter; Provisional	99.69
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.69
PRK15011	393	sugar efflux transporter B; Provisional	99.69
PRK05122	399	major facilitator superfamily transporter; Provisi	99.68
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.68
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.68
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.68
PRK09952	438	shikimate transporter; Provisional	99.68
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.67
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.67
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.67
PRK03545	390	putative arabinose transporter; Provisional	99.67
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.67
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.66
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.66
TIGR00895	398	2A0115 benzoate transport.	99.66
TIGR00891	405	2A0112 putative sialic acid transporter.	99.65
TIGR00898	505	2A0119 cation transport protein.	99.65
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.65
PRK10133	438	L-fucose transporter; Provisional	99.65
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.64
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.64
PRK03893	496	putative sialic acid transporter; Provisional	99.63
PRK09874	408	drug efflux system protein MdtG; Provisional	99.63
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.63
PRK12382	392	putative transporter; Provisional	99.63
KOG2615	451	consensus Permease of the major facilitator superf	99.63
PRK03633	381	putative MFS family transporter protein; Provision	99.62
PLN00028	476	nitrate transmembrane transporter; Provisional	99.62
TIGR00805	633	oat sodium-independent organic anion transporter.	99.62
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.62
PTZ00207	591	hypothetical protein; Provisional	99.62
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.61
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.61
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.61
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.61
PRK15011	393	sugar efflux transporter B; Provisional	99.61
TIGR00900	365	2A0121 H+ Antiporter protein.	99.61
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.6
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.6
KOG0254	513	consensus Predicted transporter (major facilitator	99.6
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.6
KOG2532	466	consensus Permease of the major facilitator superf	99.6
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.6
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.6
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.59
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.59
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.59
PRK10504	471	putative transporter; Provisional	99.58
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.58
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.58
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.58
PRK11010	491	ampG muropeptide transporter; Validated	99.58
PRK09528	420	lacY galactoside permease; Reviewed	99.57
PRK11010	491	ampG muropeptide transporter; Validated	99.57
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.57
PRK11902	402	ampG muropeptide transporter; Reviewed	99.57
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.57
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.56
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.55
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.55
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.55
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.55
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.55
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.54
KOG0254	513	consensus Predicted transporter (major facilitator	99.54
TIGR00901	356	2A0125 AmpG-related permease.	99.54
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.53
PRK09669	444	putative symporter YagG; Provisional	99.53
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.53
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.52
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.52
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.51
KOG0569	485	consensus Permease of the major facilitator superf	99.5
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.5
PRK10429	473	melibiose:sodium symporter; Provisional	99.49
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.49
PRK10133	438	L-fucose transporter; Provisional	99.49
PF13347	428	MFS_2: MFS/sugar transport protein	99.49
PRK10054	395	putative transporter; Provisional	99.48
PRK11902	402	ampG muropeptide transporter; Reviewed	99.47
PRK09848	448	glucuronide transporter; Provisional	99.47
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.46
PRK10091	382	MFS transport protein AraJ; Provisional	99.46
TIGR00901	356	2A0125 AmpG-related permease.	99.46
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.46
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.44
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.44
PRK11462	460	putative transporter; Provisional	99.44
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.44
COG2211	467	MelB Na+/melibiose symporter and related transport	99.43
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.43
KOG2532	466	consensus Permease of the major facilitator superf	99.43
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.43
KOG2533	495	consensus Permease of the major facilitator superf	99.43
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.43
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.42
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.42
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.42
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.42
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.4
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.39
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.38
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.38
PRK11043	401	putative transporter; Provisional	99.38
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.37
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.37
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.35
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.34
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.33
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.32
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.3
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.3
PRK09669	444	putative symporter YagG; Provisional	99.27
KOG2533	495	consensus Permease of the major facilitator superf	99.26
PRK10429	473	melibiose:sodium symporter; Provisional	99.24
KOG3762	618	consensus Predicted transporter [General function	99.23
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.21
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.19
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.18
PF13347	428	MFS_2: MFS/sugar transport protein	99.14
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.12
PRK11462	460	putative transporter; Provisional	99.12
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.12
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.1
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.09
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.09
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.05
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.03
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.99
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.97
KOG2563	480	consensus Permease of the major facilitator superf	98.94
PRK09848	448	glucuronide transporter; Provisional	98.89
COG2211	467	MelB Na+/melibiose symporter and related transport	98.81
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.81
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.81
KOG2563	480	consensus Permease of the major facilitator superf	98.79
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.75
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.71
PTZ00207	591	hypothetical protein; Provisional	98.66
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.58
KOG2615	451	consensus Permease of the major facilitator superf	98.58
KOG3626	735	consensus Organic anion transporter [Secondary met	98.57
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.55
COG0477	338	ProP Permeases of the major facilitator superfamil	98.54
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.54
TIGR00805	633	oat sodium-independent organic anion transporter.	98.53
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.5
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.46
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.41
PF12832	77	MFS_1_like: MFS_1 like family	98.37
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.35
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.34
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.27
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.23
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.17
KOG3626	735	consensus Organic anion transporter [Secondary met	98.16
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.06
PRK03612	521	spermidine synthase; Provisional	98.02
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.99
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.98
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.94
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.91
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.91
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.91
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.85
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.84
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.62
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.6
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.58
KOG0637	498	consensus Sucrose transporter and related proteins	97.55
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.52
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.4
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.38
COG3202	509	ATP/ADP translocase [Energy production and convers	97.23
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.14
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.02
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.01
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.9
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.8
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.76
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.75
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.74
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.5
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.49
KOG3810	433	consensus Micronutrient transporters (folate trans	96.09
KOG3762	618	consensus Predicted transporter [General function	95.84
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.31
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.03
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	94.81
KOG0637	498	consensus Sucrose transporter and related proteins	94.62
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	94.13
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	93.96
COG4262	508	Predicted spermidine synthase with an N-terminal m	93.76
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.31
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	92.43
PRK10263	1355	DNA translocase FtsK; Provisional	91.72
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	91.34
KOG3097	390	consensus Predicted membrane protein [Function unk	91.31
KOG3880	409	consensus Predicted small molecule transporter inv	90.35
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	88.2
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	87.13
KOG2765	416	consensus Predicted membrane protein [Function unk	86.7
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	86.68
KOG3810	433	consensus Micronutrient transporters (folate trans	84.18
KOG1278	628	consensus Endosomal membrane proteins, EMP70 [Intr	84.14
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	83.82
KOG2881	294	consensus Predicted membrane protein [Function unk	83.62
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	81.15

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=1.7e-26  Score=179.67  Aligned_cols=245  Identities=38%  Similarity=0.637  Sum_probs=194.0

Q ss_pred             CccccCCCCCCCccccchh-hhhhccchhhccchhhhhhHHhHHhhhcccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 024637            1 MAFVNQTKLPPGILVSDKA-IKENEESNLLRDTHMLSITRKITEKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYY   79 (265)
Q Consensus         1 ia~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   79 (265)
                      ||++|++..|...++.... .+++++.       ...  +.+....+..+.+..++++++.++.++..+..+|++.+.||
T Consensus       273 iArmNg~qlplgvl~~s~~~~~e~e~~-------~~~--~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyy  343 (528)
T KOG0253|consen  273 IARMNGKQLPLGVLESSAIDRQEQEES-------DLD--DSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYY  343 (528)
T ss_pred             HHHhcCCCCCcceeeeehhhhhhhhhh-------chh--hhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHH
Confidence            6889999999887765432 1111111       111  11222334456678899999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCC------Cccccc---CCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 024637           80 GAVLLTSKLSSGDSKCG------SKVLHV---DKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACI  150 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  150 (265)
                      +..+......+....|+      +.+.+.   -..+...-+.-..+..+..++|.++.+++.||+|||+.+..+++++++
T Consensus       344 g~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~i  423 (528)
T KOG0253|consen  344 GSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGI  423 (528)
T ss_pred             HHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHH
Confidence            99888887776655443      222221   123334446677777899999999999999999999999999999999


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHH
Q 024637          151 FLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAV  230 (265)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~  230 (265)
                      +.+++....+.....+..+...++..+.+.+.+.|.+|++|+..|+++.|.+....++|+++.|+++  +........+.
T Consensus       424 flfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i  501 (528)
T KOG0253|consen  424 FLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPI  501 (528)
T ss_pred             HHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehH
Confidence            9999988777666777778888889999999999999999999999999999999999999999998  44444566788


Q ss_pred             HHHHHHHHHHHHHHhcCCccccccch
Q 024637          231 ILFEVVFVLAIASSLLFPFETMGREL  256 (265)
Q Consensus       231 ~~~~~~~~i~~~~~~~~~~~~~~~~~  256 (265)
                      .+++.+++++.+...+++.|||++..
T Consensus       502 ~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  502 FVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             HHHHHHHHHHHHHheeeeeccCCCCC
Confidence            89999999999999999999998764

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.90  E-value=3.2e-22  Score=174.75  Aligned_cols=144  Identities=26%  Similarity=0.343  Sum_probs=122.1

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 024637          110 LYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEI  189 (265)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~  189 (265)
                      .+...++..++.+++.++.|+++||+|||++++++.++.+++++++.+.++...++++.++.+++.++.++..+++++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677789999999999999999999999999999999988888777666667777778888888889999999999


Q ss_pred             cCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccccc
Q 024637          190 YPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRE  255 (265)
Q Consensus       190 ~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  255 (265)
                      +|++.|++++|+.+..+++|++++|++++.+.+. +...++++.+++.++++++.+++ |||+++.
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~L-PET~~~~  740 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKL-PDTRGQV  740 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhC-CCCcccc
Confidence            9999999999999999999999999999988765 45567777777777777766666 6988764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.87  E-value=3e-21  Score=159.43  Aligned_cols=204  Identities=15%  Similarity=0.209  Sum_probs=159.5

Q ss_pred             cccccccccc-chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHH
Q 024637           48 GFSSFFMLFS-RKLIRTTLLLWVLFFANVF-SYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGL  125 (265)
Q Consensus        48 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (265)
                      ...+++++++ +..++...+.+...+...+ ..+....|...++++.+           .+...+.+.....++...+.+
T Consensus       254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG-----------~~~~~a~~an~~~g~v~~~~t  322 (485)
T KOG0569|consen  254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAG-----------FTPEEAQYANLGIGIVNLLST  322 (485)
T ss_pred             cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHH
Confidence            5568889996 4566666666555555433 45566677777776554           777888889999999999999


Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhc----c-h-hHH---HHHHHHHHHHHHhh-hhhhhhhhcccccCCCcc
Q 024637          126 ILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH----Q-S-AVV---TTLLLFGVRMCVTG-TITVATIYAPEIYPTPAR  195 (265)
Q Consensus       126 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----~-~-~~~---~~~~~~~~g~~~~~-~~~~~~~~~~e~~p~~~r  195 (265)
                      +++.++.||.|||++++.+..++.++.+++...    . . .|.   .+++.+++.++.+. ..|+.+-+.+|++|++.|
T Consensus       323 ~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R  402 (485)
T KOG0569|consen  323 LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSAR  402 (485)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccch
Confidence            999999999999999999999998887766551    1 1 122   22333333333332 348899999999999999


Q ss_pred             hhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccccchhhhhhhc
Q 024637          196 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAI  263 (265)
Q Consensus       196 ~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  263 (265)
                      +.++++.....++..++..+.++.+.+..|. ..|+.+.+.+.+..+..++..||||+|+..|+.++.
T Consensus       403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~  469 (485)
T KOG0569|consen  403 SAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEEL  469 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHH
Confidence            9999999999999999999999999999887 788889999999999999999999999988776653

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.85  E-value=8.5e-20  Score=159.68  Aligned_cols=181  Identities=17%  Similarity=0.163  Sum_probs=140.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL  139 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  139 (265)
                      .|..++++.+..+........+...+|.+..+.           +.+..+.+++.++..++.+++.+++|+++||+|||+
T Consensus       165 ~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~-----------gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~  233 (742)
T TIGR01299       165 QWALFFVLGLALMADGVEVFVVGFVLPSAEKDL-----------CIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQ  233 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            344444444444444443445566677765433           366678888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          140 SMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      +++++.++.+++.++..+.++.+.+++++++.|++.++..++..++++|.+|++.|+..+++...+..+|.++++.++..
T Consensus       234 ~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~  313 (742)
T TIGR01299       234 CLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWA  313 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888899999999999999999999999999999999999999999999999999999988877


Q ss_pred             HHhhc-------------chhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          220 LVTSC-------------HLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       220 l~~~~-------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      +....             +|++.+++.++..++. ++.+++.||++
T Consensus       314 il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESP  358 (742)
T TIGR01299       314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESP  358 (742)
T ss_pred             HHHhccchhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCH
Confidence            76543             3555555544444444 44444556764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.85  E-value=2.4e-20  Score=159.31  Aligned_cols=199  Identities=21%  Similarity=0.291  Sum_probs=133.7

Q ss_pred             cccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCch------------HHHHH
Q 024637           51 SFFMLFSR----KLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNS------------LYVDV  114 (265)
Q Consensus        51 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~  114 (265)
                      ++++++++    ++++.++.....++...+.+|+...|.|.+.++.+           .+...            .....
T Consensus       273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G-----------~~~~~~~~~~~~~~~~~~~~~~  341 (502)
T TIGR00887       273 SWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIG-----------YSPPAATNNAYEELYKTAVGNL  341 (502)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHc-----------CCCCccchhHHHHHHHHHHHHH
Confidence            57777642    23344444455566666778888888888875543           22111            11123


Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 024637          115 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ----SAVVTTLLLFGVRMCVTGTITVATIYAPEIY  190 (265)
Q Consensus       115 ~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  190 (265)
                      .+..++.+++.++.++++||+|||++++++.++.+++++++....    +........+...++..+..+..+.+.+|++
T Consensus       342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            344456677889999999999999999888877777665554321    1111111111122222334567788899999


Q ss_pred             CCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc----------chhHHHHHHHHHHHHHHHHHhcCCccccccchhhhh
Q 024637          191 PTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC----------HLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTV  260 (265)
Q Consensus       191 p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  260 (265)
                      |++.|+++.|+.+.+++++++++|.+.+++.+..          +....+.+++++++++.+.. ++.|||++++++|.+
T Consensus       422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~  500 (502)
T TIGR00887       422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELS  500 (502)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhh
Confidence            9999999999999999999999999999998742          33456777777777766654 455799998887654


Q ss_pred             h
Q 024637          261 D  261 (265)
Q Consensus       261 ~  261 (265)
                      +
T Consensus       501 ~  501 (502)
T TIGR00887       501 G  501 (502)
T ss_pred             C
Confidence            3

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.84  E-value=3.8e-19  Score=148.29  Aligned_cols=182  Identities=13%  Similarity=0.046  Sum_probs=154.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL  139 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  139 (265)
                      .++.+..+++.++........+....|.+.++.           +.+..+.++..+...++..++.++.|++.||+|||+
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~-----------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~   74 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDL-----------GLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR   74 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhc-----------CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH
Confidence            455566666666666676777777777665443           477888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          140 SMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      ++..+.++..++.++..+.++.+.+++.+++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~  154 (412)
T TIGR02332        75 WIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGY  154 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888999999999999999999889888999999999999999999999999999999999998


Q ss_pred             HHh------hcchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          220 LVT------SCHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       220 l~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      +.+      ..||++.|.+.++..++..++.+++.||++
T Consensus       155 l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p  193 (412)
T TIGR02332       155 ILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP  193 (412)
T ss_pred             HHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence            874      358999999888777766666666656654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.83  E-value=6.3e-19  Score=141.76  Aligned_cols=181  Identities=13%  Similarity=0.032  Sum_probs=167.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhch
Q 024637           58 RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGR  137 (265)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  137 (265)
                      +..+...+.+.++.|+....-+...-.+|.+.++.           +.+....++..+++.++..+++++...++||+.|
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl-----------~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~R   77 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADL-----------GVSEGAAGQLITAYALGVALGAPLLALLTGRLER   77 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            34556777777888888888888888899988555           4888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHH
Q 024637          138 KLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA  217 (265)
Q Consensus       138 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~  217 (265)
                      |++++....+..++.++..+++|++.+++.+++.++..|..+++..+...++.|+++|++++++......++.++|..++
T Consensus        78 r~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLG  157 (394)
T COG2814          78 RRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG  157 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHhcCCc
Q 024637          218 VGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  249 (265)
Q Consensus       218 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  249 (265)
                      .++.+.+||+.+|+..+++.++..+..+...|
T Consensus       158 t~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         158 TFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999988888887776

>PRK03545 putative arabinose transporter; Provisional

Probab=99.83  E-value=7.8e-19  Score=145.58  Aligned_cols=177  Identities=8%  Similarity=-0.005  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH
Q 024637           63 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV  142 (265)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  142 (265)
                      ..+.+.+..+......+.....+|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||+++.
T Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~   78 (390)
T PRK03545         10 RVVTLALAAFIFNTTEFVPVGLLSDIAQSF-----------HMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLI   78 (390)
T ss_pred             HHHHHHHHHHHHHhHHHHHHcchHHHHhHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            344444443333333333444567776544           478889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHh
Q 024637          143 LMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVT  222 (265)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~  222 (265)
                      .+.++.+++.+...+.++.+.+++.+++.|++.+...+...+++.|.+|+++|+.++|+......+|..++|.+.+.+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~  158 (390)
T PRK03545         79 GLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ  158 (390)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            99999999999888899999999999999988888888899999999999999999999999999999999999999999


Q ss_pred             hcchhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          223 SCHLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       223 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      ..||++.+.+.+++.++..+..+...|+
T Consensus       159 ~~gw~~~f~~~~~~~~l~~~~~~~~~~~  186 (390)
T PRK03545        159 YLGWRTTFLAIGGGALITLLLLIKLLPL  186 (390)
T ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999888777666555544444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.83  E-value=1.2e-18  Score=148.35  Aligned_cols=194  Identities=19%  Similarity=0.217  Sum_probs=135.1

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAI  130 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  130 (265)
                      ++++++++ +++.+.......+.....+|++..|+|.+.++..          +.+.....+......++.+++.++.|+
T Consensus       240 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~~~~~~~~~~~~~~~~~~~~g~  308 (490)
T PRK10642        240 SFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNL----------HYSEDHGVLIIIAIMIGMLFVQPVMGL  308 (490)
T ss_pred             CHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666643 3444444444455566778888889999885433          355455566666777888899999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHH-H--hhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhh
Q 024637          131 IVDKIGRKLSMVLMFVSACIFLLP-L--VFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGK  207 (265)
Q Consensus       131 l~dr~grr~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~  207 (265)
                      ++||+|||+++.++.++..+..+. +  ....+...+++..++.+++.+...+....+++|++|++.|++++|+.+..+.
T Consensus       309 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~  388 (490)
T PRK10642        309 LSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISV  388 (490)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHH
Confidence            999999999888777644433222 1  2234445555666667777666677788888899999999999999888888


Q ss_pred             HHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhcCCccccccch
Q 024637          208 VGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETMGREL  256 (265)
Q Consensus       208 ~g~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  256 (265)
                      +++.++|.+.+++.+..+ ++.++++..+..+++.+..+++ ||+++...
T Consensus       389 ~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-pes~~~~~  437 (490)
T PRK10642        389 LVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM-KETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh-ccccCCCC
Confidence            888999999999987654 4555555555555555555544 68766543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.83  E-value=1e-18  Score=144.88  Aligned_cols=181  Identities=10%  Similarity=0.016  Sum_probs=149.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL  139 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  139 (265)
                      .|+.+..+.++.+......|.....+|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~   86 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDL-----------GISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRY   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH
Confidence            455555555554444445555555567776444           477788899888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          140 SMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      ++..+.++.+++.+...+.++.+.+++.+++.|++.+...+....++.|.+|+++|+.+.++.....++|..++|.++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~  166 (394)
T PRK10213         87 VVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSF  166 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcchhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          220 LVTSCHLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       220 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      +.+..+|++.+.+.+++.++..+......||+
T Consensus       167 l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        167 LGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             HHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            99999999999887776665554444434453

>TIGR00898 2A0119 cation transport protein

Probab=99.82  E-value=1.1e-18  Score=149.49  Aligned_cols=188  Identities=34%  Similarity=0.593  Sum_probs=142.5

Q ss_pred             cccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHH
Q 024637           50 SSFFMLFS-RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILS  128 (265)
Q Consensus        50 ~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (265)
                      .+++++++ ++.++.++..++.++.....+|+...+.+.+.               .   +......+.++..+++.++.
T Consensus       314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~---~~~~~~~~~~~~~i~~~~~~  375 (505)
T TIGR00898       314 YSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG---------------G---NIYLDLFISGLVELPAKLIT  375 (505)
T ss_pred             CcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC---------------C---ChHHHHHHHHHHHHHHHHHH
Confidence            46777886 44455555556666666677777666655443               2   23455556677888999999


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhh
Q 024637          129 AIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSA--VVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLG  206 (265)
Q Consensus       129 g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~  206 (265)
                      +++.||+|||+.+.++.++.+++.+++.+.++.  +..++..++.+++.+..++..+.+.+|.+|++.|++++|+.+..+
T Consensus       376 ~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~  455 (505)
T TIGR00898       376 LLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMA  455 (505)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHH
Confidence            999999999999999998888888777664433  445555666677777788899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccccchhh
Q 024637          207 KVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD  258 (265)
Q Consensus       207 ~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  258 (265)
                      ++|++++|++.+ + +..+...++.++++..+++.++.+++ |||+++++++
T Consensus       456 ~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l-pet~~~~l~~  504 (505)
T TIGR00898       456 RVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFL-PETKGVPLPE  504 (505)
T ss_pred             HHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcC-cCCCCCCCCC
Confidence            999999999998 4 44466778888888777777766655 5998876643

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.81  E-value=2e-18  Score=145.02  Aligned_cols=175  Identities=11%  Similarity=0.078  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHH
Q 024637           65 LLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLM  144 (265)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~  144 (265)
                      +..++.++......+.+..+.|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||+++.++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~   94 (434)
T PRK11663         26 ITMYLGYALFYFTRKSFNAAMPEMLADL-----------GLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIG   94 (434)
T ss_pred             HHHHHHHHHHHHhhhhHHHhhHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHH
Confidence            3444445555555556677788887554           47778889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 024637          145 FVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC  224 (265)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~  224 (265)
                      .++.+++.++..+.++.+.+++.+++.+++.+..++....++.|.+|+++|++++|+.+....+|+.++|.+.+++.+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~  174 (434)
T PRK11663         95 LIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY  174 (434)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999888888888888888888898888888889999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          225 HLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       225 ~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      +|++.+.+.+++.++..+...+..+|
T Consensus       175 gw~~~f~~~~i~~~~~~~~~~~~~~~  200 (434)
T PRK11663        175 GWRYGMMIAGIIAIVVGLFLCWRLRD  200 (434)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999988877665554443333333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.81  E-value=3e-18  Score=146.17  Aligned_cols=180  Identities=14%  Similarity=0.074  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHH
Q 024637           61 IRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLS  140 (265)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  140 (265)
                      +..+..+++..+...........-+|.+..+.           +.+..+..+..+.+.++...+.++.|+++||+|||++
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l-----------~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~   73 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTL-----------GASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL   73 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34555566666666666677777788887554           3677788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhccccc-CCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          141 MVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIY-PTPARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      +.++.++..++.+...+.++.+.+++.+++.|++.+...+.....+.+.+ |+++|+++.|+......+|..+||.++++
T Consensus        74 l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~  153 (495)
T PRK14995         74 LMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGI  153 (495)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888887777776665 67899999999999999999999999999


Q ss_pred             HHhhcchhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          220 LVTSCHLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       220 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      +.+..+|++.|++...+.++..++.++..|+.
T Consensus       154 l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~  185 (495)
T PRK14995        154 LLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ  185 (495)
T ss_pred             hhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999888777776666655555554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.81  E-value=3.7e-18  Score=139.28  Aligned_cols=169  Identities=15%  Similarity=0.149  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHHHHHH-HhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHH
Q 024637           70 LFFANVFSYYGAVLLTS-KLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSA  148 (265)
Q Consensus        70 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~  148 (265)
                      ..+.............| .+.++.           +.+..+.++..+...++..++.++.|+++||+|||+++.++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~   72 (352)
T PF07690_consen    4 AFFLSGFGFSIISPALPLYLAEEL-----------GLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLF   72 (352)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHCCS-----------TTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhh
Confidence            34444555555556666 444333           477888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhH
Q 024637          149 CIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRL  228 (265)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~  228 (265)
                      +++.+...+.++.+..++.+++.|++.+...+....++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+..+|+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~  152 (352)
T PF07690_consen   73 ALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRW  152 (352)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCC
T ss_pred             hhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccc
Confidence            99855555556666888999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCc
Q 024637          229 AVILFEVVFVLAIASSLLFPF  249 (265)
Q Consensus       229 ~~~~~~~~~~i~~~~~~~~~~  249 (265)
                      .+++.+++.++..++..++.+
T Consensus       153 ~~~~~~~~~~~~~il~~~~~~  173 (352)
T PF07690_consen  153 AFLISAILSLIAAILFILFLP  173 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCCC-
T ss_pred             ccccccchhhhhhhhHhhhhh
Confidence            999998888887775444443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.81  E-value=5.4e-18  Score=140.98  Aligned_cols=182  Identities=16%  Similarity=0.156  Sum_probs=150.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhch
Q 024637           58 RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGR  137 (265)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  137 (265)
                      +..++.+...++.++......+......|.+.++.           +.+..+.++..++..++..++.++.|+++||+||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~   76 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEF-----------GLTTVDAASLISAALISRWFGALMFGLWGDRYGR   76 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44566666777777777777777777788776444           4777888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHH
Q 024637          138 KLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA  217 (265)
Q Consensus       138 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~  217 (265)
                      |+++.++.++.+++.+...+.++.+.+++.+++.|++.+...+...+++.|.+|+++|+.+.++.+....+|.++++.+.
T Consensus        77 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~  156 (405)
T TIGR00891        77 RLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVY  156 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcc--hhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          218 VGLVTSCH--LRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       218 ~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      +.+.+..+  |+..+.+.++..++..+ .....||+
T Consensus       157 ~~l~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~~~  191 (405)
T TIGR00891       157 SLVVPVWGDGWRALFFISILPIIFALW-LRKNIPEA  191 (405)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHHH-HHHhCCCC
Confidence            99888766  87777665444444333 33333454

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.81  E-value=2.2e-18  Score=142.44  Aligned_cols=171  Identities=12%  Similarity=0.126  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 024637           72 FANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIF  151 (265)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~  151 (265)
                      +.............|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++
T Consensus        15 ~~~~~~~~~~~~~~p~~~~~~-----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   83 (385)
T TIGR00710        15 ILGPLGIDMYLPAFPEIAADL-----------STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS   83 (385)
T ss_pred             HHHHHHHHHhcccHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            333344444444556665443           477788899999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHH
Q 024637          152 LLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVI  231 (265)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  231 (265)
                      .+...+.++.+..++.+++.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+++.+..+|+..+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  163 (385)
T TIGR00710        84 SLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA  163 (385)
T ss_pred             HHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            88888888888888899999999999889999999999999999999999999999999999999999999899999888


Q ss_pred             HHHHHHHHHHHHHhcCCccccc
Q 024637          232 LFEVVFVLAIASSLLFPFETMG  253 (265)
Q Consensus       232 ~~~~~~~i~~~~~~~~~~~~~~  253 (265)
                      +.+++.++..+..++..||+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       164 FLSLAGILLSALIFFILPETLP  185 (385)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCC
Confidence            8887777666666655555543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.81  E-value=4.5e-18  Score=144.32  Aligned_cols=180  Identities=14%  Similarity=0.181  Sum_probs=140.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhc
Q 024637           57 SRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIG  136 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g  136 (265)
                      ++++++.+...+...+......+....+.|.+.++.           +.+..+.++..+...++..++.++.|+++||+|
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G   99 (476)
T PLN00028         31 ARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNL-----------NLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYG   99 (476)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            345566666666666666666677777778777544           367778888888888889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHH
Q 024637          137 RKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLV  216 (265)
Q Consensus       137 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i  216 (265)
                      ||+++.++.++.+++.++..+.++.+.+++.+++.|++.+.. .....+++|.+|+++|+.++|+.+...++|+.+++.+
T Consensus       100 ~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~  178 (476)
T PLN00028        100 PRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLL  178 (476)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888888888888888888888888888877654 3455678899999999999999998888888888777


Q ss_pred             HHHHHh---------hcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          217 AVGLVT---------SCHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       217 ~~~l~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      .+.+..         ..||++.|.+.+++.++..+..+++.
T Consensus       179 ~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        179 MPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            665532         14799999988888776666655554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.81  E-value=2.7e-18  Score=143.09  Aligned_cols=181  Identities=15%  Similarity=0.103  Sum_probs=150.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL  139 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  139 (265)
                      .+..+.+.+...+......+......|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~   81 (406)
T PRK11551         13 LALTIGLCFLVALLEGLDLQSAGVAAPRMAQEF-----------GLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKR   81 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence            444555566666666666677777778777544           477788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          140 SMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      ++..+.++..++.+...+.++.+.+++.+++.|++.+...+...+++.|.+|+++|++++++.+....+|..+++.+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  161 (406)
T PRK11551         82 ILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVL  161 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888887888888899999999999999889999999999999999999999999999999999999988


Q ss_pred             HHhhcchhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          220 LVTSCHLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       220 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      +.+..+|+..+.+.+++.++..++..+..||+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  193 (406)
T PRK11551        162 AAGDAAWRHIFYVGGVGPLLLVPLLMRWLPES  193 (406)
T ss_pred             HccccCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            88888898888877766555555444444454

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.80  E-value=3.5e-19  Score=141.99  Aligned_cols=184  Identities=14%  Similarity=0.084  Sum_probs=162.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhch
Q 024637           58 RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGR  137 (265)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  137 (265)
                      +.+++.++..++.+....+..-.+..-.|.+.++.           +.+..+.+.+.+...+...++-++.|.++||.+.
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~-----------~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~np   93 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDG-----------GLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNP   93 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence            33445555566667677777777788888887554           3888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHH
Q 024637          138 KLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA  217 (265)
Q Consensus       138 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~  217 (265)
                      |..+.++++++++..+++.+.++.+.+.++.++.|++.|..+|++...+..++|+++||+..++-+...|+|+.+.|.+.
T Consensus        94 r~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~  173 (448)
T COG2271          94 RYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA  173 (448)
T ss_pred             ceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             --HHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          218 --VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       218 --~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                        +++..+.+|+..|++-+++.++.+++.++..++++
T Consensus       174 ~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P  210 (448)
T COG2271         174 LLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP  210 (448)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence              89988889999999999999888888777765443

>PRK10054 putative transporter; Provisional

Probab=99.80  E-value=3.5e-18  Score=141.72  Aligned_cols=174  Identities=13%  Similarity=0.091  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH
Q 024637           63 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV  142 (265)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  142 (265)
                      .++.+....++....++....++|.+.++..          +.+..++++..++..++..++.++.|+++||+|||+++.
T Consensus         8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~----------g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~   77 (395)
T PRK10054          8 STSALLASSLLLTIGRGATLPFMTIYLSRQY----------SLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYML   77 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHH
Confidence            3444555566666667777777777764432          578889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHh
Q 024637          143 LMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVT  222 (265)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~  222 (265)
                      ++.++.+++.+.+.+.++.+..++.+++.+.+.+...+....+..|.+|++.|+++.|+.+...++|.+++|.+.+++.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~  157 (395)
T PRK10054         78 LAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM  157 (395)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988888888777777877776666666766666677888999999999999999999999999999999999998875


Q ss_pred             hcchhHHHHHHHHHHHHHHHHHhcC
Q 024637          223 SCHLRLAVILFEVVFVLAIASSLLF  247 (265)
Q Consensus       223 ~~~~~~~~~~~~~~~~i~~~~~~~~  247 (265)
                       .+|+..+...+++.++..++..+.
T Consensus       158 -~g~~~~f~~~~~~~~i~~i~~~~~  181 (395)
T PRK10054        158 -QSINLPFWLAAICSAFPLVFIQIW  181 (395)
T ss_pred             -hccCcHHHHHHHHHHHHHHHHHHH
Confidence             688888887777766665554443

>PRK10504 putative transporter; Provisional

Probab=99.80  E-value=5.6e-18  Score=143.87  Aligned_cols=180  Identities=12%  Similarity=0.038  Sum_probs=151.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL  139 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  139 (265)
                      .++.++.+++..+......+.+..+.|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~   76 (471)
T PRK10504          8 VRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSL-----------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRN   76 (471)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            345566666677777777777888899888654           477777788888888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          140 SMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      ++..+.++.+++.+...+.++.+.+++.+++.|++.+...+....++.|.+|++.|+++.|+.....++|..++|.+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~  156 (471)
T PRK10504         77 IFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL  156 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            99999888888887777778888888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcchhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          220 LVTSCHLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       220 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      +.+..+|++.|.+......+..+......|+
T Consensus       157 l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        157 LVEYASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999888777666666555555444

>TIGR00895 2A0115 benzoate transport

Probab=99.80  E-value=3e-18  Score=142.10  Aligned_cols=181  Identities=15%  Similarity=0.140  Sum_probs=148.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL  139 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  139 (265)
                      .++.....++.++...........+.|.+.++.           +.+..+.++......++..++.++.|+++||+|||+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~   83 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEW-----------GLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKR   83 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcc-----------CCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH
Confidence            344444455555555555566667778777444           467778888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          140 SMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      .+.++.++.+++.++..+.++.+.+++.+++.|++.+...+...+++.|.+|++.|+++.++......+|..++|.+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  163 (398)
T TIGR00895        84 VLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW  163 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHH
Confidence            99999999988888888888888888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcchhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          220 LVTSCHLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       220 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      +.+..+|+..+.+.+++..+..++.++..||+
T Consensus       164 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (398)
T TIGR00895       164 LIPVFGWRSLFYVGGIAPLLLLLLLMRFLPES  195 (398)
T ss_pred             HhhcccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence            99988998888877666655555555444454

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.79  E-value=3.2e-18  Score=145.79  Aligned_cols=176  Identities=10%  Similarity=0.059  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHH
Q 024637           65 LLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLM  144 (265)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~  144 (265)
                      ..+++..+.............|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   73 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNVAIPTIAGDL-----------GSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLIS   73 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHH
Confidence            3344445555555555666778777554           36777888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 024637          145 FVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC  224 (265)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~  224 (265)
                      .++..++.+.....++.+.+++.+++.|++.+...+...+++.|.+|++.|+.+.++......+|..++|.+.+++.+..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  153 (485)
T TIGR00711        74 TFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY  153 (485)
T ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc
Confidence            99999999988888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          225 HLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       225 ~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      +|++.+++.+.+.++..++.++..|++
T Consensus       154 ~w~~~f~~~~~~~~~~~~~~~~~~~~~  180 (485)
T TIGR00711       154 HWRWIFLINVPIGIIVVVVAFFILPRD  180 (485)
T ss_pred             CceehhhhhhHHHHHHHHHHHHHcCCc
Confidence            999998887777766666555555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.79  E-value=1.1e-17  Score=142.91  Aligned_cols=174  Identities=17%  Similarity=0.175  Sum_probs=147.7

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAI  130 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  130 (265)
                      ++.+.+++.+++.+...++.++...+..+......|.+.++.           +.+..+.++..+...++..++.++.|+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~s~~~~~~~~~~~~~~~~~~~~~~g~   77 (496)
T PRK03893          9 PWYRHLNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEF-----------GLTTVQAASLISAAFISRWFGGLLLGA   77 (496)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555666666777777777777777777778776443           477778888888899999999999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHH
Q 024637          131 IVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGG  210 (265)
Q Consensus       131 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~  210 (265)
                      ++||+|||+++.++.++.+++.+.+.+.++.+.+++.+++.|++.+..++....++.|.+|++.|+.+.++.....++|.
T Consensus        78 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  157 (496)
T PRK03893         78 MGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGA  157 (496)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888888888899999999999998889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHH
Q 024637          211 MVCPLVAVGLVTSCHLRLAVILFEV  235 (265)
Q Consensus       211 ~~~~~i~~~l~~~~~~~~~~~~~~~  235 (265)
                      .++|.+.+.+.+..+|++.+.+...
T Consensus       158 ~~~~~~~~~l~~~~~w~~~f~~~~~  182 (496)
T PRK03893        158 VVAAQVYSLVVPVWGWRALFFIGIL  182 (496)
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHH
Confidence            9999999999999999888766433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.79  E-value=9.9e-18  Score=141.93  Aligned_cols=176  Identities=15%  Similarity=0.085  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhh-hchHHH
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDK-IGRKLS  140 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~  140 (265)
                      +.++.++...+...+.+|++..++|.|..+.+        ..+.+..+.+.......++..++.+++|+++|| +|||++
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~--------~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~   81 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQA--------GLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT   81 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH
Confidence            44555666677778899999999999985430        125777888999999999999999999999999 899999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc---chhhHHHHHhhhhHHHHHHHHHH
Q 024637          141 MVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPA---RTTGFGVASSLGKVGGMVCPLVA  217 (265)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~---r~~~~g~~~~~~~~g~~~~~~i~  217 (265)
                      +.++.++.+++.+++.+.++.+.+++.+.+.+++.+...+...+++++.+|++.   |++++++.+...++|++++|.+.
T Consensus        82 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~  161 (475)
T TIGR00924        82 MVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLA  161 (475)
T ss_pred             HHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHH
Confidence            999999999999888887777777777888888888888999999999998754   89999999999999999999999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 024637          218 VGLVTSCHLRLAVILFEVVFVLAIASSL  245 (265)
Q Consensus       218 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~  245 (265)
                      +++.+..+|+..|...++..+++.+...
T Consensus       162 g~l~~~~g~~~~f~~~~~~~~~~~l~~~  189 (475)
T TIGR00924       162 GVIAENYGYHVGFNLAAVGMVIGLLTFF  189 (475)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            9999988999888887765555444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.79  E-value=1.3e-17  Score=139.83  Aligned_cols=164  Identities=17%  Similarity=0.145  Sum_probs=140.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL  139 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  139 (265)
                      +++..+..++.++...+..+......|.+.++.           +.+..+.++..++..++..++.++.|+++||+|||+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~   84 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADL-----------GLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKP   84 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence            344455556666666666666666677666443           467778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          140 SMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      ++.++.++.+++.+...+.++.+.+++.+++.|++.+..++....++.|.+|+++|+++.++......+|.++++.+.+.
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307         85 LMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence            99999999999998888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcchhHHHHHHH
Q 024637          220 LVTSCHLRLAVILFE  234 (265)
Q Consensus       220 l~~~~~~~~~~~~~~  234 (265)
                      +.+..+|+..+++..
T Consensus       165 l~~~~~w~~~f~i~~  179 (426)
T PRK12307        165 FAEAYGWRAAFFVGL  179 (426)
T ss_pred             HcccCCHHHHHHHHH
Confidence            988889988887644

>PRK03699 putative transporter; Provisional

Probab=99.79  E-value=2.6e-17  Score=136.60  Aligned_cols=176  Identities=15%  Similarity=0.192  Sum_probs=146.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchH
Q 024637           59 KLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRK  138 (265)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  138 (265)
                      ++++.++..++.++......+.+...+|.+.++.           +.+..+.++..+...++..++.++.|++.||+|||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~-----------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r   72 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYF-----------NLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLK   72 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            4456666666666666666677777788877544           47778888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHH
Q 024637          139 LSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAV  218 (265)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~  218 (265)
                      +++..+.++.+++.++..+.++.+.+++.+++.|++.+...+....++.|.+|++.|+.+.+..+....+|+.++|.+.+
T Consensus        73 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  152 (394)
T PRK03699         73 RQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAA  152 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888888888888889999999988888888999999999999999999998888899999999998


Q ss_pred             HHHh-hcchhHHHHHHHHHHHHHHHHHh
Q 024637          219 GLVT-SCHLRLAVILFEVVFVLAIASSL  245 (265)
Q Consensus       219 ~l~~-~~~~~~~~~~~~~~~~i~~~~~~  245 (265)
                      ++.+ ..+|++.+...+++.++..++.+
T Consensus       153 ~l~~~~~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        153 YLLARSIEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            8765 46899998887777665554443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.79  E-value=1e-17  Score=138.54  Aligned_cols=178  Identities=13%  Similarity=0.044  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHH
Q 024637           64 TLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVL  143 (265)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  143 (265)
                      .+...+..+......+.....+|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||+++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~   73 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDV-----------GISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLF   73 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHc-----------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence            34444455555555556666777776444           4777788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh
Q 024637          144 MFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS  223 (265)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~  223 (265)
                      +.++.+++.++..+.++.+.+++.+++.|++.+...+....++.|++|+++|+.++++......+|..++|.+.+++.+.
T Consensus        74 ~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~  153 (382)
T PRK10091         74 LVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE  153 (382)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh
Confidence            99999999998888999999999999999998888888888899999999999999999988899999999999999998


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          224 CHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       224 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      .+|++.+.+.+++.++..+..++..||.+
T Consensus       154 ~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        154 FSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            89999998888777666555555455543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.79  E-value=1.7e-17  Score=138.22  Aligned_cols=170  Identities=24%  Similarity=0.333  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHH
Q 024637           68 WVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVS  147 (265)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~  147 (265)
                      +...+......+....|.|.+.++.           +.+....+.......++.+++.++.|++.||+|||+.+.++.+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~p~~~~~~-----------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~  294 (406)
T PRK11551        226 WISYFFTLIVLYFLLNWLPSLLVGQ-----------GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-----------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3334444455666677888887553           46667778888888899999999999999999999998887777


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchh
Q 024637          148 ACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR  227 (265)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~  227 (265)
                      .+++.+.+...++.+...+..++.+++.++..+...++..|.+|++.|+++.|+.+...++|+.++|.+.|++.+..+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~  374 (406)
T PRK11551        295 ILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRST  374 (406)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCch
Confidence            77766666666666666666777777777778888999999999999999999999999999999999999999876544


Q ss_pred             HHHH-HHHHHHHHHHHHHhcCC
Q 024637          228 LAVI-LFEVVFVLAIASSLLFP  248 (265)
Q Consensus       228 ~~~~-~~~~~~~i~~~~~~~~~  248 (265)
                      ..++ ......+++.++.++..
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        375 VGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            4333 33333344444444443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.78  E-value=4e-18  Score=141.00  Aligned_cols=164  Identities=13%  Similarity=0.083  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHh
Q 024637           77 SYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV  156 (265)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  156 (265)
                      ..+.+....|.+.++.           +.+..+.++..++..++..++.++.|+++||+|||+++.++.++.+++.+...
T Consensus         9 ~~~~~~~~~~~~~~~~-----------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   77 (399)
T TIGR00893         9 DRANLSFAAPMLQEDL-----------GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA   77 (399)
T ss_pred             HHHhhhHhHHHHHHhh-----------CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence            3344445556555333           47778889999999999999999999999999999999999999999888888


Q ss_pred             hcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 024637          157 FHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVV  236 (265)
Q Consensus       157 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~  236 (265)
                      +.++.+.+++.+++.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|++.+...+++
T Consensus        78 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  157 (399)
T TIGR00893        78 FAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVL  157 (399)
T ss_pred             HHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             HHHHHHHHhcCCccc
Q 024637          237 FVLAIASSLLFPFET  251 (265)
Q Consensus       237 ~~i~~~~~~~~~~~~  251 (265)
                      .++..+..++..+|+
T Consensus       158 ~~~~~~~~~~~~~~~  172 (399)
T TIGR00893       158 GIIWGVLWLKFIPDP  172 (399)
T ss_pred             HHHHHHHhhheecCC
Confidence            776666665555444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.78  E-value=1.6e-17  Score=138.57  Aligned_cols=149  Identities=16%  Similarity=0.137  Sum_probs=131.3

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +.+.....+..+++.++..++.++.|+++||+|||+++..+.++.+++.+.....++.+.+++.+++.|++.+...+..+
T Consensus        47 ~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~  126 (413)
T PRK15403         47 NADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGY  126 (413)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777888888999999999999999999999999999999999999998888889999999999999998877667778


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      .++.|.+|+++|++++++......+|..++|.+++.+.+..||++.|++.++..++..+..++..||++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        127 VTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            889999999999999999999999999999999999998889999998888877777665555556654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.78  E-value=1.8e-17  Score=139.00  Aligned_cols=176  Identities=19%  Similarity=0.172  Sum_probs=138.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh-chH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI-GRK  138 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr  138 (265)
                      +.+.++.++...+...+.+|++..++|.|+.+..          +.+..+.+.....+.....++.+++|+++||+ |||
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~l----------gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr   76 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQL----------KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR   76 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH
Confidence            4566677777777888899999999999985543          57778888888888888899999999999999 999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC--cchhhHHHHHhhhhHHHHHHHH
Q 024637          139 LSMVLMFVSACIFLLPLVFHQ-SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTP--ARTTGFGVASSLGKVGGMVCPL  215 (265)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~g~~~~~~  215 (265)
                      +++.++.++..++.+++.... +....++...+..++.+...+...++++|.+|++  .|.+++++.+...++|+.++|.
T Consensus        77 r~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~  156 (493)
T PRK15462         77 MAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI  156 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence            999999999988877665432 2222333334444566666677788999999986  7999999999999999999999


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 024637          216 VAVGLVTSCHLRLAVILFEVVFVLAIASSL  245 (265)
Q Consensus       216 i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  245 (265)
                      +.+++.+..||+..|...++..+++.+..+
T Consensus       157 l~g~L~~~~Gw~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        157 ACGYAQEEYSWAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             HHHHHHhhhChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988876655554444433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.78  E-value=1e-17  Score=137.36  Aligned_cols=167  Identities=12%  Similarity=-0.064  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 024637           74 NVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL  153 (265)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~  153 (265)
                      +...+..+...+|.+.++.           +.+..+.++..+.+.++..++.+..|+++||+|||+++..+......+.+
T Consensus         3 ~~~~~~~~~~~lp~i~~~~-----------~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~   71 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDI-----------DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG   71 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHh-----------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            3445556666777777544           47778889999999999999999999999999999887655555444433


Q ss_pred             HHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHH
Q 024637          154 PLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF  233 (265)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  233 (265)
                      .....++.+.+++.+++.|++.+. ........+|.+|+++|++++++.+....+|..+++.+.+++.+..||+..|++.
T Consensus        72 ~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~  150 (368)
T TIGR00903        72 RLLDPFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI  150 (368)
T ss_pred             HHHHhccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            233336788899999999999875 4555666689999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhcCCcccc
Q 024637          234 EVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       234 ~~~~~i~~~~~~~~~~~~~  252 (265)
                      +++.++..++.++..||++
T Consensus       151 ~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       151 AAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHHHHHHHcCCCC
Confidence            8887777666666666654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.78  E-value=3.3e-18  Score=136.48  Aligned_cols=178  Identities=20%  Similarity=0.175  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh--chH
Q 024637           61 IRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRK  138 (265)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr  138 (265)
                      .+.++.+++.++......|++..|.|.|+.+..          +.+..++.+..+.+=+++++|++++||++||+  |||
T Consensus       251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k----------~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR  320 (448)
T COG2271         251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVK----------GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRR  320 (448)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc----------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccc
Confidence            366777888888889999999999999997766          68888899999999999999999999999996  777


Q ss_pred             HHHHHHHHHHHHHH-HHHhhcc--hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhH-HHHHHH
Q 024637          139 LSMVLMFVSACIFL-LPLVFHQ--SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKV-GGMVCP  214 (265)
Q Consensus       139 ~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~  214 (265)
                      ....+.+.+....+ +.....+  +.+...++.++.|+...+.+-+.-....|..|++.-|++.|+...++.+ |...+.
T Consensus       321 ~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~  400 (448)
T COG2271         321 GPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAG  400 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcC
Confidence            76655544444444 4444444  4577778888889888888888888899999999999999999999997 999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          215 LVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       215 ~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      ...|++.|.+||...|.++.+.++++.++.....
T Consensus       401 ~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         401 LPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             CcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888888777776665554

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.78  E-value=2.3e-17  Score=137.52  Aligned_cols=149  Identities=17%  Similarity=0.093  Sum_probs=129.7

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +.+..+.++..+...++..++.++.|+++||+|||+++.++.++.+++.+...+.++.+.+++.+++.|++.+...+...
T Consensus        44 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~  123 (406)
T PRK15402         44 NAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGY  123 (406)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHH
Confidence            46777888888899999999999999999999999999999999998888888888888888889999988888778888


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      ..+.|.+|++.|+.+.++......++..++|.+.+.+.+..+|++.+++.+++.++..+..++..||++
T Consensus       124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        124 AAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999988888999999999999999889999998888777766665555555654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.78  E-value=1.5e-17  Score=136.39  Aligned_cols=144  Identities=12%  Similarity=0.078  Sum_probs=125.5

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHHHhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ-----SAVVTTLLLFGVRMCVTGT  178 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~  178 (265)
                      +.+..+.++..++..++..++.++.|+++||+|||+++.++.++..++.+...+..     +.+.+++.+++.|++.+..
T Consensus        30 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  109 (365)
T TIGR00900        30 TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFF  109 (365)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence            36667889999999999999999999999999999999999888887777666654     7888888999999999999


Q ss_pred             hhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcC
Q 024637          179 ITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  247 (265)
Q Consensus       179 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  247 (265)
                      .+...++++|++|+++|+++.++.+....+|.+++|.+.+++.+..+|+..+.+.++..++..+..+..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999988887776666555444433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.78  E-value=1.7e-17  Score=140.65  Aligned_cols=175  Identities=11%  Similarity=0.085  Sum_probs=142.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhh-hch
Q 024637           59 KLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDK-IGR  137 (265)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~gr  137 (265)
                      ++++.++.+++..+...+.+|++..+++.|.++..          +.+..+..+....+.....+..+++|+++|| +||
T Consensus        11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~l----------g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~   80 (489)
T PRK10207         11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQL----------GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGT   80 (489)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccch
Confidence            35667777777888888999999988888875433          5666777777777777777788899999999 999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHhhhhhhhhhhcccccCCC--cchhhHHHHHhhhhHHHHHHH
Q 024637          138 KLSMVLMFVSACIFLLPLVFHQSAV-VTTLLLFGVRMCVTGTITVATIYAPEIYPTP--ARTTGFGVASSLGKVGGMVCP  214 (265)
Q Consensus       138 r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~g~~~~~  214 (265)
                      |+++.++.++..++.+.+.+..+.. .+++.+++.+++.+...+...+++.|.+|++  +|+.++++.+...++|..++|
T Consensus        81 r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~  160 (489)
T PRK10207         81 KRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL  160 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence            9999999999999998888765433 3446777888888888899999999999987  457899999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 024637          215 LVAVGLVTSCHLRLAVILFEVVFVLAIAS  243 (265)
Q Consensus       215 ~i~~~l~~~~~~~~~~~~~~~~~~i~~~~  243 (265)
                      .++|++.+..||++.|++.++..+++.+.
T Consensus       161 ~l~g~l~~~~gw~~~F~i~~i~~~~~~~~  189 (489)
T PRK10207        161 SLAPVIADKFGYSVTYNLCGAGLIIALLV  189 (489)
T ss_pred             HHHHHHHHhhChHHHHHHHHHHHHHHHHH
Confidence            99999999999998888765544433333

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.78  E-value=1.3e-17  Score=139.50  Aligned_cols=175  Identities=10%  Similarity=-0.053  Sum_probs=141.7

Q ss_pred             HHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhc
Q 024637           79 YGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH  158 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  158 (265)
                      .+...+.|.+.++..          +.+....++......++.+++.++.+++.||.++++.+..+.++.+++.+.+.+.
T Consensus       240 ~~~~~~~p~~~~~~~----------g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  309 (417)
T PRK10489        240 SAVRVLYPALADEVW----------QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM  309 (417)
T ss_pred             HhHHHhhHHHHHhcc----------CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc
Confidence            345566787775533          4666777888888889999999999999999888888888887777777776667


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 024637          159 QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFV  238 (265)
Q Consensus       159 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  238 (265)
                      ++.+...+..++.|++.+...+...+++.|..|++.||++.|+.+...++|..++|.+.|++.+..|....+...+++..
T Consensus       310 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~  389 (417)
T PRK10489        310 PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLL  389 (417)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence            77666667777778877777777888999999999999999999999999999999999999999998888888877777


Q ss_pred             HHHHHHhcCCccccccchhhhhhhc
Q 024637          239 LAIASSLLFPFETMGRELKDTVDAI  263 (265)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~  263 (265)
                      +..++.+...+++++++.+|.++|.
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~  414 (417)
T PRK10489        390 IIGVLLLLVLGELRRFRQTPPEVDA  414 (417)
T ss_pred             HHHHHHHHhcccccccccccccCCC
Confidence            6666666666788888777776654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.78  E-value=3.6e-17  Score=135.84  Aligned_cols=183  Identities=12%  Similarity=0.029  Sum_probs=145.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchH
Q 024637           59 KLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRK  138 (265)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  138 (265)
                      +.++..++.....+...+..+.....+|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~-----------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr   73 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDL-----------NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR   73 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh
Confidence            3444455555555544455444555566666443           47778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHH
Q 024637          139 LSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAV  218 (265)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~  218 (265)
                      +++.++.++..++.+...+.++.+.+++.+++.|++.+...+....+..|.++.+.|+.+.++.+....++..++|.+.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~  153 (394)
T PRK11652         74 PVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGG  153 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888888888888899999998888777778888899999999999999998888899999999999


Q ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          219 GLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      .+.+..+|+..+.+.++..++..+...+..||++
T Consensus       154 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        154 LLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR  187 (394)
T ss_pred             HHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            9998889998888877766655554444445543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.77  E-value=6.8e-18  Score=143.18  Aligned_cols=182  Identities=16%  Similarity=0.234  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHH
Q 024637           64 TLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVL  143 (265)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  143 (265)
                      ++..++..+......+....+.|.+.++.           +.+....++......++.+++.++.|+++||+|||+.+.+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  354 (481)
T TIGR00879       286 FLGVVLQWFQQFTGINAIMYYSPTIFENA-----------GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLI  354 (481)
T ss_pred             HHHHHHHHHHHHhCCeehHHHHHHHHHHc-----------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            33333434444444445566677776444           3555666777888888899999999999999999999998


Q ss_pred             HHHHHHHHHHHHhh-----cch-----hHHHHHHHHHHHHHHh-hhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHH
Q 024637          144 MFVSACIFLLPLVF-----HQS-----AVVTTLLLFGVRMCVT-GTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMV  212 (265)
Q Consensus       144 ~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~g~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~  212 (265)
                      +.++.+++.+.+.+     ..+     .+..+....+.+.+.+ +..+....++.|.+|++.|+++.|+.+...++|+++
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i  434 (481)
T TIGR00879       355 GAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFI  434 (481)
T ss_pred             HHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHH
Confidence            88877777666552     111     2222222223333333 233666778899999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccccch
Q 024637          213 CPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGREL  256 (265)
Q Consensus       213 ~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  256 (265)
                      +|.+.+++.+..++...+.+.++++++++++.+++.||+++++.
T Consensus       435 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~  478 (481)
T TIGR00879       435 VGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL  478 (481)
T ss_pred             HHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence            99999999998899888888888888888887777778776654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.77  E-value=8.7e-17  Score=136.86  Aligned_cols=174  Identities=17%  Similarity=0.171  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh
Q 024637           78 YYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF  157 (265)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  157 (265)
                      ++....+.|.+..+.           +.+.....+.....++..+++.++.++++||+|||++++.+.++.+++.+.+..
T Consensus       287 ~~~~~~~~p~i~~~~-----------g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~  355 (479)
T PRK10077        287 INVVLYYAPEIFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT  355 (479)
T ss_pred             hhHHHHHHHHHHHHc-----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHH
Confidence            445556677776443           355455566666777888999999999999999999999999888887766543


Q ss_pred             c---chh-HHHHHHHHHHHHHHhhh-hhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHH------hhcch
Q 024637          158 H---QSA-VVTTLLLFGVRMCVTGT-ITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLV------TSCHL  226 (265)
Q Consensus       158 ~---~~~-~~~~~~~~~~g~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~------~~~~~  226 (265)
                      .   ... .......++.+++.+.. .+..+.+++|.+|++.|+++.|+.+...++|+++++.+.+.+.      +..++
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~  435 (479)
T PRK10077        356 AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHN  435 (479)
T ss_pred             HHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccC
Confidence            1   111 12222333344444332 3677899999999999999999999999999999987776554      46677


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCccccccchhhhhhh
Q 024637          227 RLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDA  262 (265)
Q Consensus       227 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  262 (265)
                      ...+.+.++++++++++.+++.||++++..+|.++.
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  471 (479)
T PRK10077        436 GFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL  471 (479)
T ss_pred             ccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence            778888888878777777777889998877665443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.77  E-value=2.7e-17  Score=136.45  Aligned_cols=164  Identities=11%  Similarity=0.050  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh
Q 024637           78 YYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF  157 (265)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  157 (265)
                      .......+|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+....
T Consensus        19 ~~~~~~~lp~~~~~~-----------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~   87 (392)
T PRK10473         19 IDMYLVGLPRIAADL-----------NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL   87 (392)
T ss_pred             HHHHhhhHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            333445567666443           467778888888888999999999999999999999999999999998888888


Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 024637          158 HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVF  237 (265)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~  237 (265)
                      .++.+..++.+++.|++.+...+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|+..+.+.+++.
T Consensus        88 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~  167 (392)
T PRK10473         88 AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMG  167 (392)
T ss_pred             hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHH
Confidence            88888888888999998888888999999999999999999999999999999999999999888889988888888777


Q ss_pred             HHHHHHHhcCCcccc
Q 024637          238 VLAIASSLLFPFETM  252 (265)
Q Consensus       238 ~i~~~~~~~~~~~~~  252 (265)
                      ++..++.++..||++
T Consensus       168 ~i~~~~~~~~~~~~~  182 (392)
T PRK10473        168 ILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHHHcCCCC
Confidence            766666555555554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.77  E-value=4.7e-17  Score=135.25  Aligned_cols=171  Identities=15%  Similarity=0.052  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHH
Q 024637           69 VLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSA  148 (265)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~  148 (265)
                      ...+......+....+.|.+.++..          +.+....++..+...+...+.+++.|+++||+|||+++.++.++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~----------g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~   86 (400)
T PRK11646         17 IDNMLVVLGFFVVFPLISIRFVDQL----------GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMR   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh----------CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHH
Confidence            4444445555555555665553332          477788899888888888889999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhH
Q 024637          149 CIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRL  228 (265)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~  228 (265)
                      +++.+.+.+.++.+.+++.+++.+++.+...+...+++.|.+|++.|+++.|+.+...++|..+||.+++++. ..+|++
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~  165 (400)
T PRK11646         87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRL  165 (400)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHH
Confidence            9999888888888888888899998888788888999999999999999999999999999999999999998 668888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCcc
Q 024637          229 AVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       229 ~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      .+.+.+++.++..++..+..||
T Consensus       166 ~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        166 VCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCc
Confidence            8888777766655444444444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.77  E-value=2.1e-17  Score=139.56  Aligned_cols=169  Identities=15%  Similarity=0.033  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 024637           71 FFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACI  150 (265)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  150 (265)
                      ..........+....|.+.++            +.+..+.++..+...++..++.++.|+++||+|||+++.++.++.++
T Consensus        38 ~~~~~~~~~~~~~~~p~l~~~------------g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i  105 (452)
T PRK11273         38 YAAYYLVRKNFALAMPYLVEQ------------GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  105 (452)
T ss_pred             HHHHHHHHHHHHHhhHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH
Confidence            333333334455667766533            37778889999999999999999999999999999999999998888


Q ss_pred             HHHHHhhc----chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHH-HHHHHHHHHHhhcc
Q 024637          151 FLLPLVFH----QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGM-VCPLVAVGLVTSCH  225 (265)
Q Consensus       151 ~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~-~~~~i~~~l~~~~~  225 (265)
                      +.+.+.+.    .+.+..++.+++.|++.+..++.....+.+.+|+++|++++|+.+....+|+. .+|.+...+....+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g  185 (452)
T PRK11273        106 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND  185 (452)
T ss_pred             HHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence            88777653    35666777788889888888787778889999999999999999888888864 45554433333458


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          226 LRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       226 ~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      |+..+++.+++.++..++.+++.||+
T Consensus       186 w~~~f~i~~~~~~~~~~l~~~~~~~~  211 (452)
T PRK11273        186 WHAALYMPAFAAILVALFAFAMMRDT  211 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            88888887777666555555444443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.76  E-value=4.4e-17  Score=133.90  Aligned_cols=173  Identities=20%  Similarity=0.231  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHH
Q 024637           64 TLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVL  143 (265)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  143 (265)
                      ++..++..+.....++....+.|.+.++..          +.+..+.++..++..++..++.++.|+++||+|||+.+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   72 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDL----------GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTL   72 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHh----------CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            344555566666777778888886332222          5788888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHh
Q 024637          144 MFVSACIFLLPLVFHQ-SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVT  222 (265)
Q Consensus       144 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~  222 (265)
                      +.++..++.+.+.+.+ +.+.+++.+++.|++.+ ..+....+++|.+|+++|+.+.++.....++|..+++.+.+.+..
T Consensus        73 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886        73 SLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            9999999998888877 88888888999888754 456678899999999999999999998888888888888777665


Q ss_pred             h----------cchhHHH-HHHHHHHHHHHHHHhcC
Q 024637          223 S----------CHLRLAV-ILFEVVFVLAIASSLLF  247 (265)
Q Consensus       223 ~----------~~~~~~~-~~~~~~~~i~~~~~~~~  247 (265)
                      .          .+|++.+ +..+++..+..++.+..
T Consensus       152 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  187 (366)
T TIGR00886       152 SLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFV  187 (366)
T ss_pred             HHHhcccccccccccchhHHHHHHHHHHHHHHHHHh
Confidence            2          3677777 43344444444443333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.76  E-value=1.7e-17  Score=136.54  Aligned_cols=168  Identities=14%  Similarity=0.074  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHH
Q 024637           69 VLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSA  148 (265)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~  148 (265)
                      +.........|....+.|.+.++.           +.+..+.++..++..++..++.++.|+++||+|||+++.++.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~   78 (377)
T TIGR00890        10 VIMCFTSGYVYTWTLLAPPLGRYF-----------GVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILY   78 (377)
T ss_pred             HHHHHHhhHHhhhhhHHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHH
Confidence            333333344666777788777444           478889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhH
Q 024637          149 CIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRL  228 (265)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~  228 (265)
                      +++.+...+.++.+.+++.+++.|++.+..++.....+.+.+| ++|+.+.++......+|..+++.+.+.+.+..+|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  157 (377)
T TIGR00890        79 GLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPA  157 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHH
Confidence            9999888888999999999999999988887777888888887 469999999999988998887777777777889999


Q ss_pred             HHHHHHHHHHHHHHHHhcCC
Q 024637          229 AVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       229 ~~~~~~~~~~i~~~~~~~~~  248 (265)
                      .+.+.+++.++..+..+++.
T Consensus       158 ~f~~~~~~~~~~~~~~~~~~  177 (377)
T TIGR00890       158 AFIYMGIIFLLVIVLGAFLI  177 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhe
Confidence            99888887777666555444

>PRK09952 shikimate transporter; Provisional

Probab=99.76  E-value=2.5e-16  Score=132.41  Aligned_cols=173  Identities=14%  Similarity=0.179  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHH
Q 024637           68 WVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVS  147 (265)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~  147 (265)
                      ....+.....+|....|.|.+.++..          +.+.........+.++..+++.++.|+++||+|||+++.++.++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~y~~~~~----------g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~  325 (438)
T PRK09952        256 IALRLCELLTMYIVTAFALNYSTQNL----------GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALI  325 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            33445556667777788888875433          34444434444555667788889999999999999998887766


Q ss_pred             HHHHHHHHhh---c-chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhh-HHHHHHHHHHHHHHh
Q 024637          148 ACIFLLPLVF---H-QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGK-VGGMVCPLVAVGLVT  222 (265)
Q Consensus       148 ~~~~~~~~~~---~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~g~~~~~~i~~~l~~  222 (265)
                      ..++.+.+..   . ++.+..++..++.+++.+...+..+++++|.+|++.|+++.|+.+..+. +|+.++|.+.+++.+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~  405 (438)
T PRK09952        326 GTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVT  405 (438)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6554433322   2 2233334445555677777778889999999999999999999887766 899999999999988


Q ss_pred             hc--chhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          223 SC--HLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       223 ~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      ..  +|...+...++..+++++..+.. +|+
T Consensus       406 ~~~~~~~~~~~~~~~~~~i~~v~~~~~-~~~  435 (438)
T PRK09952        406 YFGGSWHSVAIYLLAGCLISAMTALLM-KDN  435 (438)
T ss_pred             hcCCCchHHHHHHHHHHHHHHHHHHHc-ccc
Confidence            54  35555665656666665555544 454

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.75  E-value=9.9e-18  Score=138.03  Aligned_cols=169  Identities=14%  Similarity=0.058  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 024637           72 FANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIF  151 (265)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~  151 (265)
                      +........+....|.+.++.           +.+..+.++..++..++..++.++.|+++||+|||+++.++.++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~-----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   73 (379)
T TIGR00881         5 AAYYLVRKNFALAMPYLVEEI-----------GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIV   73 (379)
T ss_pred             hHHHHhHHhhhhhhHHHHHHh-----------CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHH
Confidence            344445555666667666443           477788899999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHH-HHHHHHHhhcchhHHH
Q 024637          152 LLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCP-LVAVGLVTSCHLRLAV  230 (265)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~-~i~~~l~~~~~~~~~~  230 (265)
                      .++..+.++.+.+++.+++.|++.+...+...+++.|.+|+++|+.+.++.+....+|..++| .+.+.+.+..+|+..+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  153 (379)
T TIGR00881        74 NLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVF  153 (379)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHH
Confidence            998888889899999999999999988999999999999999999999999999999999999 5767777777888888


Q ss_pred             HHHHHHHHHHHHHHhcCCccc
Q 024637          231 ILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       231 ~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      .+.+++.++..++.++..+|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~  174 (379)
T TIGR00881       154 IVPGIIAIIVSLICFLLLRDS  174 (379)
T ss_pred             HHHHHHHHHHHHHHheeeCCC
Confidence            887777766655555554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.75  E-value=1.8e-16  Score=132.16  Aligned_cols=174  Identities=16%  Similarity=0.112  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCch-----HHHHHHHHHhhhhHHHHHHHHHHhhhchHHH
Q 024637           66 LLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNS-----LYVDVFIASLAELPGLILSAIIVDKIGRKLS  140 (265)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  140 (265)
                      ..++..+.....+.....++|.+.++.+           .+..+     .++..++..++..++.++.|+++||+|||++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~   86 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLG-----------VTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM   86 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhC-----------CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHH
Confidence            3344445555566666677888875543           33332     3667778888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHH
Q 024637          141 MVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGL  220 (265)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l  220 (265)
                      +..+.++.+++.+++...++.+.+++.+++.|++.+ ..+....++.+.+|+++|+.+.++.+....+|..++|.+.+.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  165 (408)
T PRK09874         87 LLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLL  165 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888888877777888888888888887644 4577777888999999999999999999999999999999999


Q ss_pred             HhhcchhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          221 VTSCHLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      .+..+|+..+.+.+++.++..+..+++.+|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        166 ADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9988999888888877776666555554443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.75  E-value=1.4e-16  Score=135.15  Aligned_cols=175  Identities=12%  Similarity=0.062  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH
Q 024637           63 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV  142 (265)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  142 (265)
                      .++...+..++....+++...|.|.|.++..          +.+..+.++......++.+++.+++|+++||+|||+.+.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~----------g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~  328 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQEL----------GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALV  328 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            4555555666666677788889999886544          467777788888888899999999999999999988766


Q ss_pred             HHHHHHHHHHH--HHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhH-HHHHHHHHHHH
Q 024637          143 LMFVSACIFLL--PLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKV-GGMVCPLVAVG  219 (265)
Q Consensus       143 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~i~~~  219 (265)
                      ....+..++..  ......+.+...+..++.|++..+..........|.+|++.||++.|+.+..+++ |++++|.+.|+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~  408 (467)
T PRK09556        329 ACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGM  408 (467)
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence            55444333322  2222344444545556666544444344446677999999999999999999996 77999999999


Q ss_pred             HHh------------hcchhHHHHHHHHHHHHHHHHHhcC
Q 024637          220 LVT------------SCHLRLAVILFEVVFVLAIASSLLF  247 (265)
Q Consensus       220 l~~------------~~~~~~~~~~~~~~~~i~~~~~~~~  247 (265)
                      +.+            ..+|...|.+.+++.+++.+..+++
T Consensus       409 i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        409 IADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            999            5678888888777777766655544

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.75  E-value=7.9e-19  Score=141.31  Aligned_cols=186  Identities=15%  Similarity=0.031  Sum_probs=159.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL  139 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  139 (265)
                      ..+...++++....+..--|.+..-++...+..           +.+....+++.+...+...+.++++|+++||+.|++
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~f-----------ni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~   99 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYF-----------NISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKR   99 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhc-----------CCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcce
Confidence            345556666667777777777665554443222           577788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          140 SMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      ++.+|..+..++.++..+...+|.+++++.+.|+|-....++..++++|+||...|++++++.+....+|.++|-..+..
T Consensus       100 v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~  179 (493)
T KOG1330|consen  100 VIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSV  179 (493)
T ss_pred             EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHhhcc-hhHHHHHHHHHHHHHHHHHhcCCccccccch
Q 024637          220 LVTSCH-LRLAVILFEVVFVLAIASSLLFPFETMGREL  256 (265)
Q Consensus       220 l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  256 (265)
                      +.+..+ |++.+...+++.++.+++.+++.+|+.++..
T Consensus       180 va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~  217 (493)
T KOG1330|consen  180 VASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGAR  217 (493)
T ss_pred             eccCccceEEEEEeehHHHHHHHHHHHhhccCcccccc
Confidence            877766 8899999999999888888888877765433

>PRK11043 putative transporter; Provisional

Probab=99.74  E-value=3.2e-16  Score=130.47  Aligned_cols=147  Identities=15%  Similarity=0.154  Sum_probs=128.1

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +.+..+.++..++..++..++.++.|+++||+|||+++..+.++..++.+...+.++.+.+++.+++.|++.+...+...
T Consensus        37 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~  116 (401)
T PRK11043         37 QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQ  116 (401)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHH
Confidence            47778889999999999999999999999999999999999998888888888888888888889998888877777778


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      .++.|.+|++.++...+.......++..++|.+.+++.+..+|+..+.+.+++.++..+..+++.++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        117 ALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            8899999999899999998888889999999999999999999988888877777666665555433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.74  E-value=1.6e-16  Score=132.14  Aligned_cols=170  Identities=10%  Similarity=-0.045  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSM  141 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  141 (265)
                      +.+....+..+............+|.+.++..          +.+..+.++..+...++..++.++.|+++||+|||+++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~----------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l   84 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQL----------GFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV   84 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH
Confidence            44444555555555555555556676553322          47778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh---c-----chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHH
Q 024637          142 VLMFVSACIFLLPLVF---H-----QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVC  213 (265)
Q Consensus       142 ~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~  213 (265)
                      ..+.++.+++.+.+..   .     .+.+.+++.+++.|++.+...+....++.|.+|+++|+++.++......+|..++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g  164 (399)
T PRK05122         85 VFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIG  164 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHH
Confidence            9998877766544333   2     1345677888999999988888888999999999999999999888888999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 024637          214 PLVAVGLVTSCHLRLAVILFEVVFVLAI  241 (265)
Q Consensus       214 ~~i~~~l~~~~~~~~~~~~~~~~~~i~~  241 (265)
                      |.+++.+.+..||+..+++..++.++..
T Consensus       165 ~~l~~~l~~~~g~~~~~~~~~~~~~~~~  192 (399)
T PRK05122        165 APLGVLLYHWGGLAGLGLLIMLLALLGL  192 (399)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            9999999999898877666555444433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.74  E-value=1.9e-17  Score=140.32  Aligned_cols=175  Identities=13%  Similarity=0.013  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSM  141 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  141 (265)
                      ..+...++.++........+....|.+.++.           +.+..+.++..+.+.++..++.++.|+++||+|||+++
T Consensus        29 ~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~-----------~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l   97 (467)
T PRK09556         29 QSYLVVFIGYLTMYLIRKNFKAAQNDMISTY-----------GLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFL   97 (467)
T ss_pred             HHHHHHHHHHHHHHHHhcChhhhhHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchH
Confidence            3344444445545555555666677776544           47778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHH
Q 024637          142 VLMFVSACIFLLPLVF-----HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLV  216 (265)
Q Consensus       142 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i  216 (265)
                      .++.++.++..+.+..     .++.+.+++.+++.|++.+...+....+++|++|+++||.++|+......+|.++++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i  177 (467)
T PRK09556         98 PFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGV  177 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHH
Confidence            8887777766655443     57888899999999999998889999999999999999999999999999999999998


Q ss_pred             HHHHHhhc---chhHHHHHHHHHHHHHHHHHhcC
Q 024637          217 AVGLVTSC---HLRLAVILFEVVFVLAIASSLLF  247 (265)
Q Consensus       217 ~~~l~~~~---~~~~~~~~~~~~~~i~~~~~~~~  247 (265)
                      ..++.+..   +|+..+.+.+++.++.+++.+++
T Consensus       178 ~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~  211 (467)
T PRK09556        178 ALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRY  211 (467)
T ss_pred             HHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHh
Confidence            87776653   46666666666665555544444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.74  E-value=6.4e-16  Score=131.79  Aligned_cols=138  Identities=17%  Similarity=0.073  Sum_probs=111.9

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHH--------HHHHHHHHHHHHhhhhhhhhhh
Q 024637          114 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVV--------TTLLLFGVRMCVTGTITVATIY  185 (265)
Q Consensus       114 ~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~  185 (265)
                      .++..++..+|+++.|+++||+|||+++.++.++++++.++..+.+++..        +++.+++.|++.++.++....+
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~  142 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF  142 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence            35556788899999999999999999999999999999999999887653        7788999999999999999999


Q ss_pred             cccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHH--------hhcchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          186 APEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLV--------TSCHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       186 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      ++|.+|++.|+...++......+|..+++.+...+.        ...||++.|++.+.+.+++.+ .....||+.
T Consensus       143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~-~~~~~~esp  216 (490)
T PRK10642        143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLY-LRHALEETP  216 (490)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHH-HHHcCCCCh
Confidence            999999999999999988877788887776655443        256899998876554444333 334445653

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.74  E-value=7.9e-17  Score=132.93  Aligned_cols=148  Identities=13%  Similarity=0.137  Sum_probs=131.8

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +.+..+.++..++..++..++.++.|+++||+|||+++..+.++.+++.+.+.+.++.+..++.+++.|++.+...+...
T Consensus        22 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  101 (377)
T PRK11102         22 GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVIN  101 (377)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47778889999999999999999999999999999999999999999998888888888888899999999988888999


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      +++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..+.+.+.+.++..+...+..||+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (377)
T PRK11102        102 ALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET  169 (377)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            99999999999999999999999999999999999999988999888888777776666655554454

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.74  E-value=5.6e-16  Score=130.21  Aligned_cols=180  Identities=18%  Similarity=0.037  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCch---HHHHHHHHHhhhhHHHHHHHHHHhhhchHHH
Q 024637           64 TLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNS---LYVDVFIASLAELPGLILSAIIVDKIGRKLS  140 (265)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  140 (265)
                      ++..++.++........+....|.+.++.+.        .+.+..+   .........++..++++++|+++||+|||++
T Consensus        24 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~   95 (432)
T PRK10406         24 IVGASSGNLVEWFDFYVYSFCSLYFAHIFFP--------SGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS   95 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            3344444555555555556666666543320        0112222   2333444456666999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHH
Q 024637          141 MVLMFVSACIFLLPLVFHQSA--------VVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMV  212 (265)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~  212 (265)
                      +.++.++.+++.+...+.++.        ..+++++++.|++.++.++...++++|.+|+++|+...++.+.....|..+
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~  175 (432)
T PRK10406         96 MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL  175 (432)
T ss_pred             HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence            999999999999888776654        357788999999999999999999999999999999999888777777777


Q ss_pred             HHHHHHHHH--------hhcchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          213 CPLVAVGLV--------TSCHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       213 ~~~i~~~l~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      ++.+...+.        +..||+.+|++.++..++... .....||++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~  222 (432)
T PRK10406        176 ALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETS  222 (432)
T ss_pred             HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCc
Confidence            777655443        256899999876665554433 333344543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.74  E-value=2.5e-16  Score=132.05  Aligned_cols=168  Identities=18%  Similarity=0.217  Sum_probs=114.8

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAI  130 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  130 (265)
                      +++++++++..+..+......+......+.+..++|.+.++.           +.+....+.......++.+++.++.|+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~~~~~g~~~~g~  288 (426)
T PRK12307        220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-----------GFDTGVVSNLMTAAAFGTVLGNIVWGL  288 (426)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666544444434333333333444445566778877543           355566677777888899999999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhH
Q 024637          131 IVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRM--CVTGTITVATIYAPEIYPTPARTTGFGVASSLGKV  208 (265)
Q Consensus       131 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~  208 (265)
                      +.||+|||+.+..+.++..+..+......+.....+..++.+.  +..+..+..+.++.|.+|++.|++++|+.+...++
T Consensus       289 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~  368 (426)
T PRK12307        289 CADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAAT  368 (426)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhH
Confidence            9999999999888887776665544432221111222222222  22233456667889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcchhHH
Q 024637          209 GGMVCPLVAVGLVTSCHLRLA  229 (265)
Q Consensus       209 g~~~~~~i~~~l~~~~~~~~~  229 (265)
                      |+.++|.+.|++.+..|....
T Consensus       369 ~~~~gp~~~g~l~~~~g~~~~  389 (426)
T PRK12307        369 SGTFNSMAATWLGITMGLGAA  389 (426)
T ss_pred             HHHHHHHHHHHHHHcccHHHH
Confidence            999999999999998886543

>PRK12382 putative transporter; Provisional

Probab=99.74  E-value=3.8e-16  Score=129.64  Aligned_cols=160  Identities=9%  Similarity=-0.046  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHH
Q 024637           67 LWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV  146 (265)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  146 (265)
                      ..+..+............+|.+..+..          +.+..+.++..+...++..+++++.|+++||+|||+++..+.+
T Consensus        20 ~~~~~~~~~~~~~~~~p~l~~~l~~~l----------g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~   89 (392)
T PRK12382         20 IAFAVFLTYMTVGLPLPVIPLFVHHDL----------GFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGML   89 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhc----------CCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHH
Confidence            333334444444444455665543222          5788899999999999999999999999999999999998877


Q ss_pred             HHHHHHHHHh---h-----cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHH
Q 024637          147 SACIFLLPLV---F-----HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAV  218 (265)
Q Consensus       147 ~~~~~~~~~~---~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~  218 (265)
                      ...++.+...   .     ..+.+.+++.+++.|++.+...+...+++.|.+|+++|++++++......+|..++|.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~  169 (392)
T PRK12382         90 ACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL  169 (392)
T ss_pred             HHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence            7665543221   1     2456778888999999988888888889999999999999999999888899999999999


Q ss_pred             HHHhhcchhHHHHHHHHH
Q 024637          219 GLVTSCHLRLAVILFEVV  236 (265)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~  236 (265)
                      ++.+..||+..+.+..+.
T Consensus       170 ~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        170 LLHSHFGFAALALTTMVL  187 (392)
T ss_pred             HHHhccChHHHHHHHHHH
Confidence            998888887655544333

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.74  E-value=9.4e-16  Score=127.47  Aligned_cols=179  Identities=12%  Similarity=0.080  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHH
Q 024637           61 IRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLS  140 (265)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  140 (265)
                      ++.+++..+..+.....++.+....+.+.+...          +.+..+.++..++..++..++.+..|++.||+|.|++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~----------~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v  102 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGF----------NFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRW  102 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence            455556666666666666666666666553212          5888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhc-----chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHH
Q 024637          141 MVLMFVSACIFLLPLVFH-----QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPL  215 (265)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~  215 (265)
                      +.++.++..+..+...+.     ++++.+++.+++.|++ +..++.....+++++|+++||++.|+....+++|..++++
T Consensus       103 ~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~  181 (462)
T PRK15034        103 TVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQL  181 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence            999999988888877765     7888999999999997 7788999999999999999999999998888888877777


Q ss_pred             HHHHHH-----h-------------hcchhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          216 VAVGLV-----T-------------SCHLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       216 i~~~l~-----~-------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      +.+.+.     +             ..+++.+.+++..+.++..++.+++.++
T Consensus       182 l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~  234 (462)
T PRK15034        182 VAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND  234 (462)
T ss_pred             HHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            666544     2             2235556667777666666666655543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.74  E-value=7.4e-17  Score=135.71  Aligned_cols=178  Identities=12%  Similarity=0.059  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSM  141 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  141 (265)
                      +.++...+.+.......+.+....|.+.+ .           +.+..+.++..++..++..++.++.|+++||+|||+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~-----------g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~   94 (438)
T TIGR00712        27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-Q-----------GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL   94 (438)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhhhHHHHH-c-----------CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh
Confidence            33344444444444444445555665542 2           47778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHH
Q 024637          142 VLMFVSACIFLLPLVFH----QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA  217 (265)
Q Consensus       142 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~  217 (265)
                      ..+.++.+++.+.....    .+.+.+.+.+++.|++.+..++.....+.|.+|+++|++++|+.+....+|+.++|.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~  174 (438)
T TIGR00712        95 PAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV  174 (438)
T ss_pred             HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence            99888888887766543    34555667788888888888888888999999999999999999999999999998887


Q ss_pred             HHHHh-hcchhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          218 VGLVT-SCHLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       218 ~~l~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      +.+.+ ..+|+..+++.+++.++..+..+++.||+
T Consensus       175 ~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       175 LLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            76554 46899888888887776665555554443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.73  E-value=4.5e-16  Score=133.15  Aligned_cols=148  Identities=17%  Similarity=0.125  Sum_probs=119.4

Q ss_pred             CCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcch------hHHHHHHHHHHHHHHhhh
Q 024637          105 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS------AVVTTLLLFGVRMCVTGT  178 (265)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~  178 (265)
                      .+....++......++.+++.++.|+++||+|||+++.++.++..++.++..+..+      .+.+++.+++.|++.++.
T Consensus        53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~  132 (502)
T TIGR00887        53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGD  132 (502)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhh
Confidence            33445677888888999999999999999999999999999988888877766543      567889999999999999


Q ss_pred             hhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHh-----------------------hcchhHHHHHHHH
Q 024637          179 ITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVT-----------------------SCHLRLAVILFEV  235 (265)
Q Consensus       179 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~-----------------------~~~~~~~~~~~~~  235 (265)
                      .+....+++|.+|++.|+++.++.+....+|..+++.+...+..                       ..+|+..+.+.++
T Consensus       133 ~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~i  212 (502)
T TIGR00887       133 YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAV  212 (502)
T ss_pred             hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHH
Confidence            99999999999999999999999999999999999988876542                       1268877765555


Q ss_pred             HHHHHHHHHhcCCccccc
Q 024637          236 VFVLAIASSLLFPFETMG  253 (265)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~  253 (265)
                      ..++..+.. +..||+.+
T Consensus       213 p~~i~~~~~-~~lpESpr  229 (502)
T TIGR00887       213 PALLALYFR-LTIPETPR  229 (502)
T ss_pred             HHHHHHHHH-HhCCCCHH
Confidence            555444443 44467643

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.73  E-value=2e-16  Score=132.50  Aligned_cols=146  Identities=12%  Similarity=0.066  Sum_probs=119.4

Q ss_pred             CCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhh
Q 024637          105 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATI  184 (265)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  184 (265)
                      .+....+...++..++..++.++.|++.||+|+|+.+.++.++.++..++..+.++.+.+++..++.+++.+...+....
T Consensus       259 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  338 (420)
T PRK09528        259 QGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFK  338 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345677777778888899999999999999999999988888888877777778777777778888777777777788


Q ss_pred             hcccccCCCcchhhHHH-HHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          185 YAPEIYPTPARTTGFGV-ASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       185 ~~~e~~p~~~r~~~~g~-~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      ++.|.+|++.|++..+. .+....+|.+++|.+.|++.+..|++..+...+++.++..++.++..++
T Consensus       339 ~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        339 YITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999988766 4566779999999999999999999988888888777666555555433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.73  E-value=2.4e-16  Score=132.43  Aligned_cols=181  Identities=13%  Similarity=0.049  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh--ch-HH
Q 024637           63 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GR-KL  139 (265)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--gr-r~  139 (265)
                      .++...+..+.....++++..|.|.+..+..          +.+..+.+....+..++..++.++.|+++||+  ++ +.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~  313 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETL----------GVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGP  313 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccH
Confidence            3444444455555666777788898885443          46667778888888899999999999999998  33 33


Q ss_pred             HHHHHHHHHHHH--HHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHH
Q 024637          140 SMVLMFVSACIF--LLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA  217 (265)
Q Consensus       140 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~  217 (265)
                      ......+...+.  .+......+........+..|++..+..........|.+|++.|+++.|+.+...++|++++|.+.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~  393 (434)
T PRK11663        314 MNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPL  393 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccH
Confidence            222221111111  111111222222223333334333323334456678999999999999999999999999999999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccc
Q 024637          218 VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  253 (265)
Q Consensus       218 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  253 (265)
                      |++.+..|+...+...+++.++.++..+...+++++
T Consensus       394 g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  429 (434)
T PRK11663        394 AKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAP  429 (434)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence            999999999888888888877777766655544443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.73  E-value=8.4e-16  Score=129.11  Aligned_cols=184  Identities=20%  Similarity=0.240  Sum_probs=113.7

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAI  130 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  130 (265)
                      +++++++++  +..+......+.....+|.+..|+|.+..+..          +.+..+.+....+..++..++.++.|+
T Consensus       234 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~----------g~s~~~~~~~~~i~~~~~~i~~~~~G~  301 (432)
T PRK10406        234 SLKGLWRNR--RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTA----------GMHANVASGIMTAALFVFMLIQPLIGA  301 (432)
T ss_pred             cHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466666432  22222222233345667888889999885443          355556666676667777888889999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHh--h--cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhh
Q 024637          131 IVDKIGRKLSMVLMFVSACIFLLPLV--F--HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLG  206 (265)
Q Consensus       131 l~dr~grr~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~  206 (265)
                      ++||+|||+++.++.++.++..+.+.  .  ..+....+....+..++.+...+..+.+.+|.+|++.|++++|+.+..+
T Consensus       302 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g  381 (432)
T PRK10406        302 LSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVA  381 (432)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHH
Confidence            99999999988776665443332221  1  2223322222222333334444567788999999999999999999888


Q ss_pred             hH-HHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHhcC
Q 024637          207 KV-GGMVCPLVAVGLVTSCHLRL-AVILFEVVFVLAIASSLLF  247 (265)
Q Consensus       207 ~~-g~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~~  247 (265)
                      ++ ++...|.+.+.+ +..|++. .++..++..+++.+..+++
T Consensus       382 ~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l  423 (432)
T PRK10406        382 NALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLML  423 (432)
T ss_pred             HHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            74 455688888855 5556444 3444444445555554443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.73  E-value=5.4e-16  Score=130.99  Aligned_cols=181  Identities=15%  Similarity=0.137  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh--chHHH
Q 024637           63 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRKLS  140 (265)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~  140 (265)
                      .++...+..+......++...|+|.|.++..          +.+....+....+..++.+++.++.|+++||+  +||..
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~----------g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~  323 (452)
T PRK11273        254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA  323 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcch
Confidence            3444444455555666778889999986543          45656677777788888899999999999999  55543


Q ss_pred             HH-HHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHH-HHHH
Q 024637          141 MV-LMFVSACIFLLPLVF--HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMV-CPLV  216 (265)
Q Consensus       141 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~-~~~i  216 (265)
                      .. ....+..++.+.+..  ..+.+..++..++.+.+..........+..|.+|++.||++.|+.+...++|+.+ +|.+
T Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v  403 (452)
T PRK11273        324 TGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI  403 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhh
Confidence            22 222222232222222  2233333333444444333333334456779999999999999999999988665 7999


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHHHhcCC-ccccc
Q 024637          217 AVGLVTSCHLRLAVILFEVVFVLAIASSLLFP-FETMG  253 (265)
Q Consensus       217 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~  253 (265)
                      .|++.+..|+...|.+.++.++++++....+. +|+|+
T Consensus       404 ~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  441 (452)
T PRK11273        404 VGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRH  441 (452)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            99999999998888888877777766655443 34443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.72  E-value=3.2e-16  Score=133.39  Aligned_cols=148  Identities=16%  Similarity=0.051  Sum_probs=120.8

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhc------------chhHHHHHHHHHH
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH------------QSAVVTTLLLFGV  171 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~  171 (265)
                      +.+..+.++..+...++..++.++.|+++||+|||+++.++.++..++.+...+.            ...+.+++.+++.
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~  130 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG  130 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence            4666788899999999999999999999999999999999998888777665541            1234567889999


Q ss_pred             HHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHH--------hhcchhHHHHHHHHHHHHHHHH
Q 024637          172 RMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLV--------TSCHLRLAVILFEVVFVLAIAS  243 (265)
Q Consensus       172 g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~--------~~~~~~~~~~~~~~~~~i~~~~  243 (265)
                      |++.+...+...++++|.+|+++|+.++++.+....+|..+++.+.+.+.        +..+|++.+.+.++..++..+.
T Consensus       131 G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~  210 (479)
T PRK10077        131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML  210 (479)
T ss_pred             hhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988899998887766553        3468998888777666665554


Q ss_pred             HhcCCcccc
Q 024637          244 SLLFPFETM  252 (265)
Q Consensus       244 ~~~~~~~~~  252 (265)
                      .++ .||+.
T Consensus       211 ~~~-l~~s~  218 (479)
T PRK10077        211 LYF-VPETP  218 (479)
T ss_pred             HHc-CCCCc
Confidence            444 45654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.72  E-value=2.6e-16  Score=131.44  Aligned_cols=147  Identities=10%  Similarity=0.109  Sum_probs=119.0

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhc-ch---hHHHHHHHHHHHHHHhhhhhhhh
Q 024637          108 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-QS---AVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      ...+...++..+..+++.++.|+++||+|||+++.++.++.+++...+... .+   .+..++..++.+++.+...+...
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~  330 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS  330 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556777888888999999999999999999999999999888876655552 21   24455667778888887778888


Q ss_pred             hhcccccCCCcchhhHHHHH-hhhhHHHHHHHHHHHHHHhhc------chhHHHHHHHHHHHHHHHHHhcCCcccccc
Q 024637          184 IYAPEIYPTPARTTGFGVAS-SLGKVGGMVCPLVAVGLVTSC------HLRLAVILFEVVFVLAIASSLLFPFETMGR  254 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~-~~~~~g~~~~~~i~~~l~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (265)
                      .++.|.+|++.|++++|+.+ ....+|.++||.+.|++.+..      ||+..+...+++.+++.++.+++.+|+++.
T Consensus       331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            99999999999999999997 566799999999999999874      477778877777777777777776676543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.72  E-value=1.4e-16  Score=135.05  Aligned_cols=146  Identities=16%  Similarity=0.109  Sum_probs=121.5

Q ss_pred             CCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHhhhhhh
Q 024637          105 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF---HQSAVVTTLLLFGVRMCVTGTITV  181 (265)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~  181 (265)
                      .+..+.++..++..++..++.++.|+++||+|||+++.++.++..++.++...   ..+.+.+++.+++.|++.+...+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  147 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASAL  147 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhH
Confidence            44678899999999999999999999999999999999999888888777744   334457888999999999999999


Q ss_pred             hhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHH---HHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          182 ATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA---VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       182 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~---~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      ...++.|.+|+++|+.++++.+....+|..+++.+.   +...+..+|++.+.+.+...++..+..+++ ||+
T Consensus       148 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l-~~~  219 (481)
T TIGR00879       148 VPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFL-PES  219 (481)
T ss_pred             HHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence            999999999999999999999999999999999998   655567789888888555555444444444 454

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00897 2A0118 polyol permease family

Probab=99.72  E-value=4.1e-16  Score=129.79  Aligned_cols=162  Identities=7%  Similarity=-0.070  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSM  141 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  141 (265)
                      +.+....+..+......+....+.+.+.++.           +.+..+.++..+...++..++.++.|++.||+|||+++
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l   81 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKAL-----------GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTM   81 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHHhHHHHHHHh-----------CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence            3444444444444444444444556666443           47778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh---h-cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHH-HHHHHH
Q 024637          142 VLMFVSACIFLLPLV---F-HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGG-MVCPLV  216 (265)
Q Consensus       142 ~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~-~~~~~i  216 (265)
                      ..+.++.+++.+...   . ..+.+..++.+++.|++.+...+.....+.+.+|+++|+++.|+.+...++|. .++|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~  161 (402)
T TIGR00897        82 MIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY  161 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988888765442   2 34666677788888888777667777788899999999999999999999986 589999


Q ss_pred             HHHHHhhcchhHHHHHHH
Q 024637          217 AVGLVTSCHLRLAVILFE  234 (265)
Q Consensus       217 ~~~l~~~~~~~~~~~~~~  234 (265)
                      .+++.+..|+...++...
T Consensus       162 ~~~l~~~~g~~~~~~~~~  179 (402)
T TIGR00897       162 SSYAIPAFGEMNTLWSAL  179 (402)
T ss_pred             HHhcccccchHHHHHHHH
Confidence            999888888654444333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.72  E-value=2.8e-16  Score=127.95  Aligned_cols=167  Identities=19%  Similarity=0.152  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHH
Q 024637           68 WVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVS  147 (265)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~  147 (265)
                      .+..+......+......|.+.++.           +.+..+.++......++..++.++.|+++||+|||+.+.++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~   73 (352)
T cd06174           5 FLGFFLSGLDRGLLSPALPLLAEDL-----------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLL   73 (352)
T ss_pred             HHHHHHHHHhhhhhHhhHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHH
Confidence            3444555566666677777777544           36777888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchh
Q 024637          148 ACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR  227 (265)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~  227 (265)
                      ..++.+.....++.+..++.+++.|++.+...+...++..|.+|+++|++..++.+....+|..++|.+.+.+.+..+|+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  153 (352)
T cd06174          74 FALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWR  153 (352)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            99999888888888889999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 024637          228 LAVILFEVVFVLAIASSL  245 (265)
Q Consensus       228 ~~~~~~~~~~~i~~~~~~  245 (265)
                      ..+.+.+...++..+...
T Consensus       154 ~~~~~~~~~~~~~~~~~~  171 (352)
T cd06174         154 WLFLILAILGLLLALLLL  171 (352)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888777766665554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.72  E-value=5.2e-16  Score=132.23  Aligned_cols=171  Identities=12%  Similarity=0.066  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhh-hchHH
Q 024637           61 IRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDK-IGRKL  139 (265)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~  139 (265)
                      .+.++..+...++....+|++..+++.|..+..          +.+..+................+++|+++|| +|||+
T Consensus        20 p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l----------g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~   89 (500)
T PRK09584         20 PKAFYLIFSIELWERFGYYGLQGIMAVYLVKQL----------GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR   89 (500)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence            345666777777788888999889998885433          4666666666555554445556789999999 59999


Q ss_pred             HHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc--chhhHHHHHhhhhHHHHHHHHH
Q 024637          140 SMVLMFVSACIFLLPLVFHQ-SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPA--RTTGFGVASSLGKVGGMVCPLV  216 (265)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~g~~~~~~i  216 (265)
                      ++.++.++.+++.+++.+.. +.+.+++.+++.+++.+...+...+++.|.+|++.  |..++++.+...++|..++|.+
T Consensus        90 ~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i  169 (500)
T PRK09584         90 VIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA  169 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH
Confidence            99999999998887777653 44455566777888888888888899999998653  4567888899999999999999


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHHH
Q 024637          217 AVGLVTSCHLRLAVILFEVVFVLAI  241 (265)
Q Consensus       217 ~~~l~~~~~~~~~~~~~~~~~~i~~  241 (265)
                      .+++.+..||+..|.+.++..+++.
T Consensus       170 ~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        170 TPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            9999999999999887765444443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.72  E-value=1e-15  Score=126.62  Aligned_cols=154  Identities=13%  Similarity=-0.030  Sum_probs=132.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL  139 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  139 (265)
                      +.+..+..++..+...........++|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-----------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~   72 (381)
T PRK03633          4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQE-----------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR   72 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            345566666666666777777778888888654           477789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          140 SMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      ++..+.++.+++.+...+.++.+.+++.+++.|++.+...+.....+.+..|+++|+++++..+...++|..++|.+.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  152 (381)
T PRK03633         73 SYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK  152 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999888888888889999999999999888888877777888888999999999999999999999999998


Q ss_pred             HHhhc
Q 024637          220 LVTSC  224 (265)
Q Consensus       220 l~~~~  224 (265)
                      +.+..
T Consensus       153 l~~~~  157 (381)
T PRK03633        153 VSTEL  157 (381)
T ss_pred             ccccc
Confidence            87653

>PRK15075 citrate-proton symporter; Provisional

Probab=99.72  E-value=1.2e-15  Score=128.16  Aligned_cols=151  Identities=17%  Similarity=0.182  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHH
Q 024637           66 LLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMF  145 (265)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~  145 (265)
                      ..+...+.....++....|.|.|.++..          +.+..+.++...+..++.+++.++.|+++||+|||+++.++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~  311 (434)
T PRK15075        242 AGMLMVAMTTVSFYLITVYTPTFGKTVL----------HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFT  311 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            3334444455667778888999886543          466666677777888888999999999999999999887765


Q ss_pred             HHHHHHHHH-Hh---hcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhh-HHHHHHHHHHHHH
Q 024637          146 VSACIFLLP-LV---FHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGK-VGGMVCPLVAVGL  220 (265)
Q Consensus       146 ~~~~~~~~~-~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~g~~~~~~i~~~l  220 (265)
                      ++..+..+. ..   ..++.........+.+++.+...+....+.+|.+|++.|+++.|+.+..+. +++.++|.+.|++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i  391 (434)
T PRK15075        312 VLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL  391 (434)
T ss_pred             HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence            544332221 11   122332333334445566666666777889999999999999999877766 4688899999999


Q ss_pred             Hhhcch
Q 024637          221 VTSCHL  226 (265)
Q Consensus       221 ~~~~~~  226 (265)
                      .+..|+
T Consensus       392 ~~~~g~  397 (434)
T PRK15075        392 IHVTGD  397 (434)
T ss_pred             HHhcCC
Confidence            998885

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.72  E-value=7.8e-16  Score=127.74  Aligned_cols=151  Identities=9%  Similarity=-0.030  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh
Q 024637           78 YYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF  157 (265)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  157 (265)
                      .+.....+|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+...+
T Consensus        25 ~~~~~~~lp~i~~~~-----------~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~   93 (393)
T PRK09705         25 LTSVGPLLPQLRQAS-----------GMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL   93 (393)
T ss_pred             hhccchhHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            355667788777544           477888999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc-chhHHHHHHHHH
Q 024637          158 HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVV  236 (265)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~-~~~~~~~~~~~~  236 (265)
                      +++.+.+++.+++.|++.+...+....++.+.+| ++|+.++|+......+|..+++.+.+++.++. +|+..+.++++.
T Consensus        94 a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~  172 (393)
T PRK09705         94 YPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP  172 (393)
T ss_pred             CcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999999999999999988888899999997 67999999999999999999999999988875 788777666555


Q ss_pred             HHHH
Q 024637          237 FVLA  240 (265)
Q Consensus       237 ~~i~  240 (265)
                      .++.
T Consensus       173 ~~~~  176 (393)
T PRK09705        173 AVVA  176 (393)
T ss_pred             HHHH
Confidence            4433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.71  E-value=4.7e-16  Score=128.65  Aligned_cols=181  Identities=13%  Similarity=0.084  Sum_probs=122.2

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAI  130 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  130 (265)
                      +.++++++   +.++...+..+......+.+..+.|.+..+..          +.+..+.++......++.+++.++.|+
T Consensus       207 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~  273 (399)
T TIGR00893       207 QIKELLKD---RRVWGLALGQFLVNIGLGFFLTWFPTYLVQER----------GLSILEAGFMASLPGIVGFIGMILGGR  273 (399)
T ss_pred             chHHHhcC---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----------cccHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            34455543   33444444455556666677777888775443          456667778888888999999999999


Q ss_pred             HHhhhchHH--HHHH------HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHH
Q 024637          131 IVDKIGRKL--SMVL------MFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVA  202 (265)
Q Consensus       131 l~dr~grr~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~  202 (265)
                      ++||++||+  ....      +.++..+..+.....++.+..+....+.+++. +..+....+.+|.+|++.|+++.|+.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~  352 (399)
T TIGR00893       274 LSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGL-GAGAIGWALISDNAPGNIAGLTGGLI  352 (399)
T ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhch-hhhhHHHHHHHhhcChhHHHHHHHHH
Confidence            999999996  1111      11111111111111223333333333333333 36788999999999999999999999


Q ss_pred             HhhhhHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHh
Q 024637          203 SSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSL  245 (265)
Q Consensus       203 ~~~~~~g~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~  245 (265)
                      +...++|+.++|.+.|++.+..| +...+.+.+++.+++.+..+
T Consensus       353 ~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       353 NSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888 77777777777666655544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.71  E-value=4.6e-16  Score=131.37  Aligned_cols=158  Identities=12%  Similarity=0.025  Sum_probs=128.1

Q ss_pred             HHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhc
Q 024637           79 YGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH  158 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  158 (265)
                      +.+..+.|.+..+.           +.+..+.++..+...++..++.++.|+++||+|||++++.+.++.+++.+++.+.
T Consensus        36 ~~~~~~~~~i~~~~-----------g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~  104 (455)
T TIGR00892        36 KAVTVFFKELQQIF-----------QATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS  104 (455)
T ss_pred             cchhhhHHHHHHHh-----------CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh
Confidence            44566677766444           4677788888888888888999999999999999999999998888888888777


Q ss_pred             chhHHHHHH-HHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 024637          159 QSAVVTTLL-LFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVF  237 (265)
Q Consensus       159 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~  237 (265)
                      ++.+.+++. +++.|++.+...+....++.+.+| +.|+++.|+.+....+|..++|.+.+.+.+..||+++|++.+++.
T Consensus       105 ~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~  183 (455)
T TIGR00892       105 SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLL  183 (455)
T ss_pred             hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            777766543 467788877666667778888886 679999999999999999999999999999999999999988877


Q ss_pred             HHHHHHHhcCC
Q 024637          238 VLAIASSLLFP  248 (265)
Q Consensus       238 ~i~~~~~~~~~  248 (265)
                      ++..+..++..
T Consensus       184 ~~~~v~~~~~~  194 (455)
T TIGR00892       184 LHCCVCGALMR  194 (455)
T ss_pred             HHHHHHHHHhC
Confidence            66555444443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.71  E-value=9.6e-16  Score=126.86  Aligned_cols=174  Identities=18%  Similarity=0.229  Sum_probs=122.7

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHH
Q 024637           50 SSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSA  129 (265)
Q Consensus        50 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  129 (265)
                      .++++.++++ ++.++......+.....++....+.|.+.++..          +.+....+.......++..++.++.|
T Consensus       208 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g  276 (394)
T TIGR00883       208 GPIRETLTKH-RKPFLLGLGLVIATTTTFYLITTYLPTYLTQTL----------GLSANSALLVLMLSLILFFITIPLSG  276 (394)
T ss_pred             CCHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555332 233444555555566667777778888874433          46666777778888889999999999


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHH-H-HHhh--cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhh
Q 024637          130 IIVDKIGRKLSMVLMFVSACIFL-L-PLVF--HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSL  205 (265)
Q Consensus       130 ~l~dr~grr~~~~~~~~~~~~~~-~-~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~  205 (265)
                      +++||+|||+.+..+..+..+.. . ....  ..+.+..+...++.+++.+...+...++++|.+|++.|+++.++.+..
T Consensus       277 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  356 (394)
T TIGR00883       277 ALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNL  356 (394)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHh
Confidence            99999999998775554444332 1 1222  244555556667777788888899999999999999999999986555


Q ss_pred             h-hHHHHHHHHHHHHHHhhcc-hhHHHHHHH
Q 024637          206 G-KVGGMVCPLVAVGLVTSCH-LRLAVILFE  234 (265)
Q Consensus       206 ~-~~g~~~~~~i~~~l~~~~~-~~~~~~~~~  234 (265)
                      . .+|..++|.+.|++.+..| +....+...
T Consensus       357 ~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~  387 (394)
T TIGR00883       357 AGAIFGGFAPYIAAALVAMTGDWYAIGYYLA  387 (394)
T ss_pred             HHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence            4 5788899999999999888 554444433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.71  E-value=2e-16  Score=134.17  Aligned_cols=149  Identities=11%  Similarity=0.009  Sum_probs=128.6

Q ss_pred             cCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHhhhh
Q 024637          102 VDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--HQSAVVTTLLLFGVRMCVTGTI  179 (265)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~  179 (265)
                      +.+.+..+.++..+.+.++..++.++.|+++||+|||+++.++.++.+++.++..+  ..+.+.+++.+++.|++.+...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            34577788889999999999999999999999999999999998888887766544  3456678888999999999999


Q ss_pred             hhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          180 TVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       180 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      +....+++|++|+++|+++.|+......+|.+++|.+.+++.+. .+|+..|.+.+++.++..++.+.+.++
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  221 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD  221 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999988 499999988888777666655555444

>PRK03699 putative transporter; Provisional

Probab=99.70  E-value=1e-15  Score=127.18  Aligned_cols=175  Identities=11%  Similarity=0.094  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH
Q 024637           63 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV  142 (265)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  142 (265)
                      .++...+..+.....++.+..|.|.|.++..          +.+..+.+...+...++..++.++.|+++||++||+.+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~  275 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKF----------GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILT  275 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Confidence            3444444455555666778889999986544          467777788888888899999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHh
Q 024637          143 LMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVT  222 (265)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~  222 (265)
                      ....+..+..+++...++.+...+..++.|++.+..++...++..+..|.+ ++...+.....+++|+.++|.+.|++.+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~  354 (394)
T PRK03699        276 VLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVA  354 (394)
T ss_pred             HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            877777776666655666655666677778877777788788888877644 6788888888889999999999999999


Q ss_pred             hcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          223 SCHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       223 ~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      ..|++..++..+++.+++.+.+....
T Consensus       355 ~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        355 HFGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HhCchhhhhhhHHHHHHHHHHHHHHH
Confidence            99998888887777776665555444

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.70  E-value=1.3e-15  Score=125.62  Aligned_cols=171  Identities=13%  Similarity=0.036  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHH-HHHHHH
Q 024637           71 FFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVL-MFVSAC  149 (265)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~~~~~~  149 (265)
                      ++............+|.+.++..          +.+..+.++..+...+...+..++.|+++||+|||+.+++ +.++..
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~   75 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEV----------RARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAA   75 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHccc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            44444555555556666654332          5777888999999889999999999999999999887654 555555


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhh--HHHHHhhhhHHHHHHHHHHHHHHhhcchh
Q 024637          150 IFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTG--FGVASSLGKVGGMVCPLVAVGLVTSCHLR  227 (265)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~--~g~~~~~~~~g~~~~~~i~~~l~~~~~~~  227 (265)
                      ++.++..+.++.+.+++.+++.+.+.+...+....+..|..|++.|+.+  .+......++|..++|.+.+++.+..+|+
T Consensus        76 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~  155 (375)
T TIGR00899        76 LACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFT  155 (375)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccH
Confidence            6666667778887777777777766666677778888888887777654  57777778899999999999999989999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCccc
Q 024637          228 LAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       228 ~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      ..+++.+++.++..+..++..||.
T Consensus       156 ~~f~~~~~~~~~~~~~~~~~~~~~  179 (375)
T TIGR00899       156 VMFLTAALAFVLCGVLVWLFLPSY  179 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCc
Confidence            999888887776666665544453

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.70  E-value=1.1e-15  Score=126.78  Aligned_cols=142  Identities=13%  Similarity=0.023  Sum_probs=114.1

Q ss_pred             CCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhh
Q 024637          105 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATI  184 (265)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  184 (265)
                      .+....++..+.+.++..+..++.|+++||+|||+++.++.++.+++.+.+.+..+.   ++.+++.|++.+...|...+
T Consensus        35 ~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a  111 (393)
T PRK11195         35 YPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYG  111 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            556677888899999999999999999999999999999999888877766554443   56678899999999999999


Q ss_pred             hcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          185 YAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       185 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      +++|++|+++|+++.|+......+|..+||.++|++.+.. +...+.+.+...++..+.. +..||.
T Consensus       112 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~~~~-~~l~~~  176 (393)
T PRK11195        112 ILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAALFN-LFIPRL  176 (393)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCCCC
Confidence            9999999999999999999999999999999999998863 5555544444433333333 334443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.70  E-value=8.7e-16  Score=108.45  Aligned_cols=134  Identities=16%  Similarity=0.200  Sum_probs=117.6

Q ss_pred             HHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcch
Q 024637          117 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPART  196 (265)
Q Consensus       117 ~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~  196 (265)
                      ..++..++.++.|++.||+|||+.+..+..+..++.+.....++.+...+..++.+++.+...+....++.|.+|++.|+
T Consensus         7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   86 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERG   86 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhh
Confidence            35677889999999999999999999998888888887777778888888888999998888899999999999999999


Q ss_pred             hhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          197 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       197 ~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      ++.++.+....+|..++|.+.+.+.+..+++..+.+.+....+..+..+++.||
T Consensus        87 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        87 VALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             HHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999988888888888877777777776666654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.70  E-value=2.4e-15  Score=124.84  Aligned_cols=176  Identities=11%  Similarity=0.048  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHH
Q 024637           67 LWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV  146 (265)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  146 (265)
                      ..+..+.....+++...|.|.+..+.           +.+..+.+....+..++.++++++.|++.||+|||+.+.++..
T Consensus       210 l~~~~~~~~~~~~~~~~~lp~~l~~~-----------g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~  278 (393)
T PRK09705        210 LGVYFGLINGGYASLIAWLPAFYIEI-----------GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALV  278 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence            33344445566777888889888653           4677778888889999999999999999999999999888877


Q ss_pred             HHHHHHHHHhh-cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccC-CCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 024637          147 SACIFLLPLVF-HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYP-TPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC  224 (265)
Q Consensus       147 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~  224 (265)
                      +..++.+.+.. ..+....  ..++.+++.+...+.......+..+ ++.|++.+|+.+..+++++.++|.+.|++.+..
T Consensus       279 l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~  356 (393)
T PRK09705        279 LQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS  356 (393)
T ss_pred             HHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77776655443 3222222  2345567777777777766667765 578999999999999999999999999999988


Q ss_pred             c-hhHHHHHHHHHHHHHHHHHhcCCccccccc
Q 024637          225 H-LRLAVILFEVVFVLAIASSLLFPFETMGRE  255 (265)
Q Consensus       225 ~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  255 (265)
                      | +...+.+.++.+++..+..+.+.||++.+.
T Consensus       357 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        357 GNYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence            7 444555555666666666667777776553

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.70  E-value=1.3e-15  Score=121.83  Aligned_cols=181  Identities=18%  Similarity=0.123  Sum_probs=150.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhc
Q 024637           57 SRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIG  136 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g  136 (265)
                      |+..++.+++..+....+...++.+....+.+..+.           +.++.+.+++..+..+.+.+.+++.|.+.||+|
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~-----------~LS~~q~~ll~aiPil~GallRl~~g~l~drfG   77 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDF-----------GLSEGQKGLLVAIPILVGALLRLPYGFLTDRFG   77 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----------CCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Confidence            455667777777776666677776766666665333           699999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHH
Q 024637          137 RKLSMVLMFVSACIFLLPLVFH---QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVC  213 (265)
Q Consensus       137 rr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~  213 (265)
                      .|++..++.++..+-++.+.+.   ++.+.++++..+.|++ |+.+++...++++.||++++|.+.|+.. .+|+|..+.
T Consensus        78 gR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~  155 (417)
T COG2223          78 GRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVA  155 (417)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHH
Confidence            9999999999999988888773   3445788888888765 5667999999999999999999999999 999999999


Q ss_pred             HHHHHHHHhhcc---hhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          214 PLVAVGLVTSCH---LRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       214 ~~i~~~l~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      .++.+.+....+   |+....++....++..+..++...+
T Consensus       156 q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         156 QLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999888   8888888888888877777766543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.69  E-value=1e-15  Score=128.12  Aligned_cols=143  Identities=13%  Similarity=0.112  Sum_probs=118.0

Q ss_pred             CCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHHHHHhhhh
Q 024637          105 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-----HQSAVVTTLLLFGVRMCVTGTI  179 (265)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~  179 (265)
                      .+..+.++..+...++..+++++.|+++||+|||+++..+.++.+++.+.+..     .++.+.+++.+++.|++.+...
T Consensus        49 ~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~  128 (417)
T PRK10489         49 GSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGV  128 (417)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            56678899999999999999999999999999999988877766665544321     4566777778888888887777


Q ss_pred             hhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcC
Q 024637          180 TVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  247 (265)
Q Consensus       180 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  247 (265)
                      +....++.|.+|+++|+++.++.+...++|..+||.+++.+.+..+|++.+.+.++..++..+..+.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (417)
T PRK10489        129 TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL  196 (417)
T ss_pred             HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC
Confidence            88889999999999999999999999999999999999999988888888877666666555554444

>PRK15075 citrate-proton symporter; Provisional

Probab=99.69  E-value=5.2e-15  Score=124.40  Aligned_cols=161  Identities=13%  Similarity=0.109  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchH-HHHHHH-----HHhhhhHHHHHHHHHHhhhc
Q 024637           63 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSL-YVDVFI-----ASLAELPGLILSAIIVDKIG  136 (265)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~g~l~dr~g  136 (265)
                      .....++.++........+....|.+.++.+           .+..+. .+..+.     ..+...++.++.|+++||+|
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~G   84 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFF-----------PAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVG   84 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Confidence            4455556667777777777888888775543           333332 222211     12333568899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcchhH--------HHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhH
Q 024637          137 RKLSMVLMFVSACIFLLPLVFHQSAV--------VTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKV  208 (265)
Q Consensus       137 rr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~  208 (265)
                      ||++++.+.++..++.+++.+.++.+        .+++.+++.|++.+...+....+++|++|+++|++++++.....++
T Consensus        85 rr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~  164 (434)
T PRK15075         85 RRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQV  164 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHH
Confidence            99999999999999998888877755        3577889999999888888889999999999999999999988888


Q ss_pred             HHHHHHHHHHHHH--------hhcchhHHHHHHH
Q 024637          209 GGMVCPLVAVGLV--------TSCHLRLAVILFE  234 (265)
Q Consensus       209 g~~~~~~i~~~l~--------~~~~~~~~~~~~~  234 (265)
                      |..+++.+++.+.        +..||+.+|++..
T Consensus       165 g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~  198 (434)
T PRK15075        165 AVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC  198 (434)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence            8888887777653        4678888887643

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.69  E-value=1e-15  Score=126.01  Aligned_cols=136  Identities=20%  Similarity=0.248  Sum_probs=111.6

Q ss_pred             CCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHhhhhhhh
Q 024637          105 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS--AVVTTLLLFGVRMCVTGTITVA  182 (265)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~  182 (265)
                      .+....+....+..++.++++++.|++.||+|||+.+.++.++..++.+.+.+.++  ....+...++.+++.+...+..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  316 (377)
T TIGR00890       237 LSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLF  316 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhcc
Confidence            55566677788888999999999999999999999999888888888776665443  2233344556677777777778


Q ss_pred             hhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 024637          183 TIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA  240 (265)
Q Consensus       183 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~  240 (265)
                      ..+++|.+|+++|+++.|+.+....+|+.++|.+.|.+.+..|+...+.+.+++.+++
T Consensus       317 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       317 PSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            8899999999999999999999999999999999999999999888887777665554

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.69  E-value=6.1e-15  Score=122.46  Aligned_cols=160  Identities=11%  Similarity=0.123  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHh
Q 024637           77 SYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV  156 (265)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  156 (265)
                      .++....+.|.+.++..          +.+..+.+.......++.+++.++.|+++||+|||+.+..+.+...+....+.
T Consensus       231 ~~~~~~~~~p~~l~~~~----------~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~  300 (393)
T PRK15011        231 TNSLYIINMPLFIINEL----------HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGML  300 (393)
T ss_pred             HHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            34444556777764433          45656667766666677788999999999999999988776665555544444


Q ss_pred             hcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 024637          157 FHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVV  236 (265)
Q Consensus       157 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~  236 (265)
                      ..++.+..++..++.+++.+...+....+..|.+|++ |+++.++.+...++|..++|.+.|.+.+..|+...+.+.+++
T Consensus       301 ~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~  379 (393)
T PRK15011        301 MAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVM  379 (393)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4556665666666666666666666777788999864 999999999989999999999999999988988888777766


Q ss_pred             HHHHHHHHhcC
Q 024637          237 FVLAIASSLLF  247 (265)
Q Consensus       237 ~~i~~~~~~~~  247 (265)
                      .+++.+..++.
T Consensus       380 ~~~~~~~~~~~  390 (393)
T PRK15011        380 IIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHhh
Confidence            66666665544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.68  E-value=7.2e-15  Score=122.24  Aligned_cols=138  Identities=12%  Similarity=0.057  Sum_probs=116.3

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 024637          111 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIY  190 (265)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  190 (265)
                      +.......++.+++.++.|++.||+|+|+.+..+..+.+++.+.+...++.+..++..++.|++.+..++.......|.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~  331 (399)
T PRK05122        252 ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRV  331 (399)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence            44556667788889999999999999999998888888887777766667777777778888888888887778888999


Q ss_pred             CCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          191 PTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       191 p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      |++.|+++.|+.+...++|..++|.+.|++.+..|++..+...+++.+++.+..+++.
T Consensus       332 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        332 PPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998888888877777776666554

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.68  E-value=5.2e-15  Score=120.49  Aligned_cols=171  Identities=22%  Similarity=0.299  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH-HHHHH
Q 024637           66 LLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL-SMVLM  144 (265)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-~~~~~  144 (265)
                      ...+..+...........+.|.+.++..          +.+..+.+.......++..++.++.+++.||+|||+ .+..+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  248 (352)
T cd06174         179 LLALAFFLLSFGYYGLLTYLPLYLQEVL----------GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG  248 (352)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3333444455555666677777775442          466677888888999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 024637          145 FVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC  224 (265)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~  224 (265)
                      ..+..++.+.....++.+...+..++.+++.+...+....+..|..|+++|++.+|+.+...++|..++|.+.+.+.+..
T Consensus       249 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~  328 (352)
T cd06174         249 LLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG  328 (352)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999988888887777788888889999999999999999999999999999999999999999999999999999988


Q ss_pred             chhHHHHHHHHHHHHHHHHHhc
Q 024637          225 HLRLAVILFEVVFVLAIASSLL  246 (265)
Q Consensus       225 ~~~~~~~~~~~~~~i~~~~~~~  246 (265)
                      +++..+.+.+++.+++.+..++
T Consensus       329 ~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         329 GYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             CcchHHHHHHHHHHHHHHHhee
Confidence            9988888888888777766544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.68  E-value=5.6e-15  Score=123.04  Aligned_cols=170  Identities=15%  Similarity=0.043  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHH
Q 024637           64 TLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVL  143 (265)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  143 (265)
                      ++.++..++...+.........|.+.++.           +.+..+.++..+...++..+++++.|++.||+|||+++.+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~-----------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~   73 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAF-----------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILL   73 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            44455555555555555556677776444           4778889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHH
Q 024637          144 MFVSACIFLLPLVF---HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGL  220 (265)
Q Consensus       144 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l  220 (265)
                      +.++.+++.++...   .++++.+++.+++.|++.+...+...+++.+..|++.|++..++.+.+.++|..++|.+.+.+
T Consensus        74 g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885        74 GLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988877543   456788888899999999999999999999999999999999999999999999999999887


Q ss_pred             Hhh--------------------------cchhHHHHHHHHHHHHHHHHH
Q 024637          221 VTS--------------------------CHLRLAVILFEVVFVLAIASS  244 (265)
Q Consensus       221 ~~~--------------------------~~~~~~~~~~~~~~~i~~~~~  244 (265)
                      ...                          .+|+.+++..+++.++..++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       154 ILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            532                          357888887777666554444

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=1.8e-16  Score=125.46  Aligned_cols=149  Identities=17%  Similarity=0.129  Sum_probs=138.8

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +....++++++....+.+++.+++.|.+.||+|+|..++++..++..+.+++.+.++++..++.+.+.|++.+.......
T Consensus       102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl  181 (464)
T KOG3764|consen  102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL  181 (464)
T ss_pred             cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCCCc-chhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          184 IYAPEIYPTPA-RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       184 ~~~~e~~p~~~-r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      +++++.||.+. |++++|+.-.+..+|-.+||.++|.+.+..|...+|++.++++++...+-++..+.++
T Consensus       182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~  251 (464)
T KOG3764|consen  182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE  251 (464)
T ss_pred             HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence            99999999875 7999999999999999999999999999999999999999999988888777764433

>PRK09952 shikimate transporter; Provisional

Probab=99.68  E-value=1.7e-14  Score=121.37  Aligned_cols=136  Identities=17%  Similarity=0.028  Sum_probs=108.9

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhH--------HHHHHHHHHHHHHhhhhhhhhhhcc
Q 024637          116 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAV--------VTTLLLFGVRMCVTGTITVATIYAP  187 (265)
Q Consensus       116 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~  187 (265)
                      +..++..+++++.|+++||+|||+++.++.++.+++.++..+.++..        .+++.+++.|++.++.++....++.
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~  151 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV  151 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence            34456678889999999999999999999999999999988887765        4778899999999999999999999


Q ss_pred             cccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHh--------hcchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          188 EIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVT--------SCHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       188 e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      |.+|+++|+...+..+....+|..+++.+..++..        ..||+..|++.++..++. +......||++
T Consensus       152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~  223 (438)
T PRK09952        152 ESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESA  223 (438)
T ss_pred             HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence            99999999999998888888888888777766543        468988887766554443 22333344543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.67  E-value=7.8e-20  Score=154.36  Aligned_cols=200  Identities=23%  Similarity=0.387  Sum_probs=140.0

Q ss_pred             ccccccccch-hHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHH
Q 024637           50 SSFFMLFSRK-LIRTTLLLWVLFFANVF-SYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLIL  127 (265)
Q Consensus        50 ~~~~~l~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (265)
                      .+++++++++ ++++++..+........ .++....+.+.+.++.+           .+..  .....+..+...++.++
T Consensus       239 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~-----------~~~~--~~~~~~~~~~~~~~~~~  305 (451)
T PF00083_consen  239 ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAG-----------ISNS--FLATLILGLVNFLGTLL  305 (451)
T ss_pred             eeeeeccccccccccccccccccccccccccccccccccccccccc-----------cccc--ccccccccccccccccc
Confidence            5688888643 35555555555444333 33445556666664433           3222  23344445667778888


Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHHh--h---cch----hHHHHHHHHHHHHHHh-hhhhhhhhhcccccCCCcchh
Q 024637          128 SAIIVDKIGRKLSMVLMFVSACIFLLPLV--F---HQS----AVVTTLLLFGVRMCVT-GTITVATIYAPEIYPTPARTT  197 (265)
Q Consensus       128 ~g~l~dr~grr~~~~~~~~~~~~~~~~~~--~---~~~----~~~~~~~~~~~g~~~~-~~~~~~~~~~~e~~p~~~r~~  197 (265)
                      +.++.||+|||++++.+..+++++.+.+.  .   ..+    ....++...+...+.+ +..+..+.+.+|++|++.|++
T Consensus       306 ~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~  385 (451)
T PF00083_consen  306 AIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRST  385 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccc
Confidence            88999999999999999888888777664  1   221    1222222222222222 344777799999999999999


Q ss_pred             hHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccccchhhhhhh
Q 024637          198 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDA  262 (265)
Q Consensus       198 ~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  262 (265)
                      +.|+....++++++++|.+.+.+.+..+....+.++++++++..++.+++.|||++++++|.+++
T Consensus       386 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  386 GIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             ccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence            99999999999999999999988887775677788888888888888888899999999988764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.67  E-value=8.3e-15  Score=121.19  Aligned_cols=177  Identities=8%  Similarity=-0.103  Sum_probs=138.5

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAI  130 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  130 (265)
                      +++++++++..+.+   .+..+......+....+.|.+.++.           +.+....+....+..++.+++.++.++
T Consensus       197 ~~~~~l~~~~~~~~---l~~~~l~~~~~~~~~~~~~~~l~~~-----------g~s~~~~g~l~~~~~~~~i~~~~~~~~  262 (382)
T TIGR00902       197 AFIALLKNPMNLRF---LAAVCLIQGAHAAYYGFSAIYWQAA-----------GISASATGLLWGIGVLAEIIIFAFSNK  262 (382)
T ss_pred             hHHHHHcChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHC-----------CCCHhHHHHHHHHHHHHHHHHHHHhHH
Confidence            34556654333322   2333333344444555667777543           477788888888888999999999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHh-hhhHH
Q 024637          131 IVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASS-LGKVG  209 (265)
Q Consensus       131 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~-~~~~g  209 (265)
                      +.||+|+|+.+.++.+...+..+.+.+.++.+.++...++.++..+...+....++.+. |++.|+++.++.+. ...+|
T Consensus       263 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g  341 (382)
T TIGR00902       263 LFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGL  341 (382)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888888888888889999999999999999999998 99999999999864 45599


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 024637          210 GMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIAS  243 (265)
Q Consensus       210 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~  243 (265)
                      .+++|.++|++.+..|. ..++..+++.+++.++
T Consensus       342 ~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       342 IAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            99999999999999885 5676777766655444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.67  E-value=4.6e-17  Score=130.95  Aligned_cols=206  Identities=23%  Similarity=0.284  Sum_probs=153.4

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCC-chHHHHHHHHHhhhhHHHHHHHHH
Q 024637           53 FMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKD-NSLYVDVFIASLAELPGLILSAII  131 (265)
Q Consensus        53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l  131 (265)
                      ..+|..++-+.++..+..||....++|+..++...+....+..+.+...   ... ...-....+..++.++|..+...+
T Consensus       295 ~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~---~~~~~vA~~~~iia~~~~vPGyw~tv~~  371 (538)
T KOG0252|consen  295 SRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY---HELFKVAEGNLIIAVCSTVPGYWFTVYF  371 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH---HHHHHHHHHHHHHHHHccCCceeEEEEE
Confidence            3344334668888889999999999999999999888654421110000   000 011122333445666788889999


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhh
Q 024637          132 VDKIGRKLSMVLMFVSACIFLLPLVFHQS-----AVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLG  206 (265)
Q Consensus       132 ~dr~grr~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~  206 (265)
                      +|++|||++.+.+++++.+..+.+....+     ....+...+...++.-+..+....+.+|.||++.|+++.|+....+
T Consensus       372 id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~G  451 (538)
T KOG0252|consen  372 IDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASG  451 (538)
T ss_pred             eehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhc
Confidence            99999999999999999999988887443     1122222333334555666788899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHh-----hcchhHHHHHHHHHHHHHHHHHhcCCccccccchhhhhhh
Q 024637          207 KVGGMVCPLVAVGLVT-----SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDA  262 (265)
Q Consensus       207 ~~g~~~~~~i~~~l~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  262 (265)
                      ..|++++.....++.+     ..+....+++++++++++.+..++++ |++++.+++..++
T Consensus       452 K~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~leei~~e  511 (538)
T KOG0252|consen  452 KAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP-ETKGKSLEEISNE  511 (538)
T ss_pred             cchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee-cccccCHHHhcCh
Confidence            9999999999999998     77888999999999998888877776 9999998876443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.67  E-value=8.5e-15  Score=121.48  Aligned_cols=143  Identities=13%  Similarity=0.044  Sum_probs=110.9

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH-HHhhcchhHHHHHHHHHHHHHHhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL-PLVFHQSAVVTTLLLFGVRMCVTGTITVA  182 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  182 (265)
                      +.+....+.......++.++++++.|+++||++||.+.. +..+..++.. .....++.+..++..++.|++.....+..
T Consensus       237 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~  315 (390)
T PRK03545        237 GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAM  315 (390)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHH
Confidence            466677788888888999999999999999999887544 4444444433 33345566666667777777766655666


Q ss_pred             hhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          183 TIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       183 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      ...+.+..| +.|++++|+.+...++|..+||.+.|++.+..|++..+...+.+.+++.+..+...
T Consensus       316 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        316 QVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            677778776 57899999999999999999999999999999999888888888777777766555

>TIGR00897 2A0118 polyol permease family

Probab=99.67  E-value=8e-15  Score=122.10  Aligned_cols=170  Identities=15%  Similarity=0.179  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH-H
Q 024637           65 LLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV-L  143 (265)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-~  143 (265)
                      +...+..++....++++..+.|.+.++.           +.+..+.+.......++..+++++.|+++||+|||+.+. .
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~  293 (402)
T TIGR00897       225 LLGGMVRIINTIGLFGFAVFLPMFVAEL-----------GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWF  293 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence            3333444555666777888889888553           366666677777788899999999999999999888764 3


Q ss_pred             HHHHHHHHHHHHhh-----cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHH
Q 024637          144 MFVSACIFLLPLVF-----HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAV  218 (265)
Q Consensus       144 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~  218 (265)
                      +.+..+++.+.+..     .++.+..++..++.|++.+...+ ......|..| ++|++++|+.+....+|+.++|.+.+
T Consensus       294 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g  371 (402)
T TIGR00897       294 GGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAV  371 (402)
T ss_pred             HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333222221     23455555666677777666544 3455667655 57999999999999999999999999


Q ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHHhcC
Q 024637          219 GLVTSCHLRLAVILFEVVFVLAIASSLLF  247 (265)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  247 (265)
                      .+.+..|+...+++.+++.+++.++..+.
T Consensus       372 ~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       372 LFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999888888888777777666554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.66  E-value=8.4e-15  Score=123.14  Aligned_cols=178  Identities=15%  Similarity=0.215  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchH--
Q 024637           61 IRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRK--  138 (265)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--  138 (265)
                      .+.+...++.++...-+..++......|.++..          +.+..+......+..+.+++|++++|++.||+|.|  
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~l----------g~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~  349 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVL----------GMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK  349 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence            355555555666555566666656666664333          68888888888889999999999999999999988  


Q ss_pred             HHHHHHHHHHHHHHHHHhh--------cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHH
Q 024637          139 LSMVLMFVSACIFLLPLVF--------HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGG  210 (265)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~  210 (265)
                      +++.++.++..+..+...+        ..+.+.++++.++.|++.|+.++..-++.+|+.|+++.+..+|+....+...+
T Consensus       350 ~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss  429 (477)
T PF11700_consen  350 RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASS  429 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence            7877777666444443333        56778888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhcCC
Q 024637          211 MVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       211 ~~~~~i~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      ++||++.|.+.+..| .+..+....++.+++.++.++..
T Consensus       430 ~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  430 WLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999887 55666666666666666665544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.66  E-value=1.7e-14  Score=118.88  Aligned_cols=143  Identities=16%  Similarity=0.196  Sum_probs=113.2

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +.+..+.+...........++.++.|++.||+|||+.+.++.++..+..+.....++.+..++..++.+++.+...+...
T Consensus       231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  310 (375)
T TIGR00899       231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM  310 (375)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666666666666778889999999999999998887776666655555556666666677777888887778888


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcC
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  247 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  247 (265)
                      .+..|..|++ ++++.++.+...++|..++|.+.|.+.+..|++..+.+.+++.+++.++..+.
T Consensus       311 ~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       311 LYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence            8899998875 67999999999999999999999999999898888888777777766665443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00895 2A0115 benzoate transport

Probab=99.66  E-value=3.7e-15  Score=123.57  Aligned_cols=155  Identities=25%  Similarity=0.316  Sum_probs=116.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhh
Q 024637           55 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDK  134 (265)
Q Consensus        55 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr  134 (265)
                      +++++..+..+..++..+.....++....+.|.+..+.           +.+....+.......++.+++.++.|+++||
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  311 (398)
T TIGR00895       243 LFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVEL-----------GFSLSLAATGGALFNFGGVIGSIIFGWLADR  311 (398)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44444455555555555556666677777888666443           3666677888888889999999999999999


Q ss_pred             hchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHH
Q 024637          135 IGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCP  214 (265)
Q Consensus       135 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~  214 (265)
                      +|||+......+......++.....+.+..++..++.+++.+...+...+++.|.+|++.|+++.|+.+.+..+|..++|
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~  391 (398)
T TIGR00895       312 LGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGP  391 (398)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99995544443333333333322455666677778888999989999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 024637          215 LVAVGL  220 (265)
Q Consensus       215 ~i~~~l  220 (265)
                      .+.|++
T Consensus       392 ~~~G~l  397 (398)
T TIGR00895       392 ILAGYL  397 (398)
T ss_pred             HhHHhc
Confidence            999875

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.65  E-value=6.9e-15  Score=122.35  Aligned_cols=146  Identities=20%  Similarity=0.284  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 024637           74 NVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL  153 (265)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~  153 (265)
                      ..........+.|.+..+..          +.+..+.+.......++.+++.++.|++.||+|||+.+.++.++..+..+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~----------g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  319 (405)
T TIGR00891       250 ANLYSHPIQDLLPTYLKADL----------GLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLII  319 (405)
T ss_pred             HHHHHhhhhhhhHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence            33444455556677664332          46667778888888899999999999999999999998887776544333


Q ss_pred             H-HhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcc-hhHH
Q 024637          154 P-LVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLA  229 (265)
Q Consensus       154 ~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~-~~~~  229 (265)
                      . .....+.+...+..++.+++.++..+....+++|.+|++.|++++|+.+...++|+.++|.+.|++.+..| +...
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~  397 (405)
T TIGR00891       320 PVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTA  397 (405)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence            2 22344445455554566666666677888899999999999999999999999999999999999999988 4433

>TIGR00898 2A0119 cation transport protein

Probab=99.65  E-value=2.8e-15  Score=128.49  Aligned_cols=141  Identities=18%  Similarity=0.142  Sum_probs=123.4

Q ss_pred             CchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhc
Q 024637          107 DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYA  186 (265)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  186 (265)
                      ..+.++..++..++.+++.++.|+++||+|||+++.++.++.+++.++..+.++.+.+++.+++.|++.+...+....++
T Consensus       126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~  205 (505)
T TIGR00898       126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLN  205 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHh
Confidence            56778899999999999999999999999999999999999999998888899999999999999999999999999999


Q ss_pred             ccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          187 PEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       187 ~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      .|.+|++.|+.+.++......+|.+++|.+++.+.+   |++.+++.++..++..+..++ .||+
T Consensus       206 ~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~-~~es  266 (505)
T TIGR00898       206 TEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWF-VPES  266 (505)
T ss_pred             heecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence            999999999999999988888999999988776653   788888777776666655544 4564

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.65  E-value=8.7e-15  Score=120.08  Aligned_cols=175  Identities=15%  Similarity=0.153  Sum_probs=118.8

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHH
Q 024637           52 FFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAII  131 (265)
Q Consensus        52 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  131 (265)
                      +++++++   +.++.....+++....+|++..|+|.++++.+           .+.. .+....+..+   .+.+..+++
T Consensus       185 ~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g-----------~s~~-~~~~~~l~~~---~g~~g~~~~  246 (368)
T TIGR00903       185 FGALAGR---KDLWIIGAILGFGVALFDNLAIWLEAALRPAG-----------LEDI-AGDAVALAIL---AGLIGVAVI  246 (368)
T ss_pred             HHHHHcC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CChH-HHHHHHHHHH---HHHHHHHHh
Confidence            5566654   33455556677778888899999999996543           3322 3334443333   344445778


Q ss_pred             Hhhhch---HHHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhh
Q 024637          132 VDKIGR---KLSMV-LMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGK  207 (265)
Q Consensus       132 ~dr~gr---r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~  207 (265)
                      +||..|   |+... ...++.++....+....+.+..++..++.+++....++..+++.+|.+|++.|+++.|+.+..++
T Consensus       247 ~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~  326 (368)
T TIGR00903       247 PDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSR  326 (368)
T ss_pred             hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHH
Confidence            887654   33333 23344444444444444444445555666777777778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhc
Q 024637          208 VGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL  246 (265)
Q Consensus       208 ~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  246 (265)
                      +|++.+|.+.+.+..  +....|..+++..+++++..++
T Consensus       327 ~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~  363 (368)
T TIGR00903       327 AISVALALAAMLFIS--SAEAYFTFLAILITIAFAIALL  363 (368)
T ss_pred             HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999988773  6667777777777777776653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10133 L-fucose transporter; Provisional

Probab=99.65  E-value=4e-14  Score=118.95  Aligned_cols=151  Identities=13%  Similarity=0.067  Sum_probs=127.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL  139 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  139 (265)
                      +...+....++++...+.........|.+.++.           +.+..+.++..+...++..++.++.|++.||+|||+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~-----------~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~   92 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAF-----------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA   92 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            445566666666777777777788888875433           477889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH---hhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHH
Q 024637          140 SMVLMFVSACIFLLPL---VFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLV  216 (265)
Q Consensus       140 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i  216 (265)
                      ++.++.++..++.+++   ...++.+.+++.+++.|++.+...+....++.|..|.+.|...+++.+....+|..++|.+
T Consensus        93 ~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~  172 (438)
T PRK10133         93 GIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF  172 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988765   3477888899999999999999999999999998777777778999999999999999988


Q ss_pred             HHHHH
Q 024637          217 AVGLV  221 (265)
Q Consensus       217 ~~~l~  221 (265)
                      ++.+.
T Consensus       173 g~~l~  177 (438)
T PRK10133        173 GQSLI  177 (438)
T ss_pred             HHHHH
Confidence            87654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.64  E-value=2.7e-14  Score=117.36  Aligned_cols=157  Identities=13%  Similarity=0.095  Sum_probs=130.7

Q ss_pred             HHHHHHHHHhhcCCCCCCCcccccCCCCCch-HHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh
Q 024637           79 YGAVLLTSKLSSGDSKCGSKVLHVDKSKDNS-LYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF  157 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  157 (265)
                      ....+..|.+..+.           +.+..+ .+.+......+..+..+++|+++||+|.|+++.++.+..++..++..+
T Consensus        43 ~n~s~a~p~L~~el-----------glT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f  111 (511)
T TIGR00806        43 PGESFITPYLLTVL-----------NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL  111 (511)
T ss_pred             chHHHHHHHHHHHc-----------CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            34444566555433           477777 889999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHH---HH
Q 024637          158 HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVIL---FE  234 (265)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~---~~  234 (265)
                      ..+...+.+.+++.|++-+..+ ....++..++|+++|+++.|+......+|.++++.+.++ +..+||+....+   ..
T Consensus       112 a~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl  189 (511)
T TIGR00806       112 GTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISL  189 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHH
Confidence            9899999999999999999998 999999999999999999999999999999999999999 556687654332   22


Q ss_pred             HHHHHHHHHHhcCC
Q 024637          235 VVFVLAIASSLLFP  248 (265)
Q Consensus       235 ~~~~i~~~~~~~~~  248 (265)
                      ....++.++.++++
T Consensus       190 ~s~~~a~~~a~~LP  203 (511)
T TIGR00806       190 VFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHHHHhCC
Confidence            33345555555655

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.64  E-value=5.8e-15  Score=124.27  Aligned_cols=174  Identities=14%  Similarity=0.128  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHH
Q 024637           69 VLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSA  148 (265)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~  148 (265)
                      +..+......+++..|.|.+.++..          +.+....++...+..++.+++.++.|+++||+++++....+....
T Consensus       258 ~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~  327 (438)
T TIGR00712       258 IANVFVYLLRYGVLDWSPTYLKEVK----------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFM  327 (438)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHcc----------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHH
Confidence            3333444556677788899886543          466677788888888899999999999999996433222222221


Q ss_pred             ---HHHHHHHhh--cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHH-HHHHHHHHHHHh
Q 024637          149 ---CIFLLPLVF--HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGG-MVCPLVAVGLVT  222 (265)
Q Consensus       149 ---~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~-~~~~~i~~~l~~  222 (265)
                         .++.+.+..  ..+.+...+..++.+++..+..........|.+|++.|+++.|+.+...++|+ +++|.+.|.+.+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~  407 (438)
T TIGR00712       328 TLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD  407 (438)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHH
Confidence               112222112  22333333333444443323223334567799999999999999999988775 689999999999


Q ss_pred             hcchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          223 SCHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       223 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      ..|+...+.+..++.+++.+..+++.+|.|
T Consensus       408 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       408 FFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            989888888888777777777777776654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.63  E-value=1.6e-14  Score=123.50  Aligned_cols=148  Identities=17%  Similarity=0.264  Sum_probs=110.5

Q ss_pred             HHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhc-
Q 024637           80 GAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-  158 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-  158 (265)
                      ....++|.+.++..          +.+..+.+...+...++.+++.++.|+++||+|||+++.++.++..+..+.+... 
T Consensus       293 ~~~~~lp~~l~~~~----------g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  362 (496)
T PRK03893        293 PIQALLPTYLKTDL----------GYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG  362 (496)
T ss_pred             hHHHHHHHHHHhhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc
Confidence            35567888875332          4677788888899999999999999999999999999888777666655443332 


Q ss_pred             -chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 024637          159 -QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVF  237 (265)
Q Consensus       159 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~  237 (265)
                       .+.+......++.++...+..+....+++|.+|++.|++++|+.+....+|+.++|.+.|.+.+..|+...+...+...
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        363 GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence             2333333333333333333456677888999999999999999999999999999999999999988877765555443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.63  E-value=1e-14  Score=121.67  Aligned_cols=138  Identities=14%  Similarity=0.165  Sum_probs=116.0

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 024637          111 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIY  190 (265)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  190 (265)
                      +....+..++.+++.+..|+++||+|||+.+..+.++.+++.+...+.++.+..++..++.|++.+...+...+.+.+..
T Consensus       261 g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  340 (408)
T PRK09874        261 GMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS  340 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC
Confidence            34445556777888899999999999999999888888777776666667777777778888888888888888888999


Q ss_pred             CCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          191 PTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       191 p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      |++.|++.+++.+....+|..++|.+.|.+.+..|+...+.+.+++.+++.+..++..
T Consensus       341 ~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        341 SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             CcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999899888888877777665544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.63  E-value=6.2e-15  Score=126.80  Aligned_cols=145  Identities=18%  Similarity=0.201  Sum_probs=127.7

Q ss_pred             CCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhh
Q 024637          105 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATI  184 (265)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  184 (265)
                      .+.....+..++..++..+|++++|.++||+|||++++++.++..++.++.+++++.+.+++++++.|++.++...+.+.
T Consensus       115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~  194 (521)
T KOG0255|consen  115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFG  194 (521)
T ss_pred             CcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHh
Confidence            44456677888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccc
Q 024637          185 YAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  253 (265)
Q Consensus       185 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  253 (265)
                      +.+|+++++.|+.+..+ ......++.++|...+++..  +|++.+++..+..++..++ +++++|+++
T Consensus       195 ~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~r  259 (521)
T KOG0255|consen  195 LVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPR  259 (521)
T ss_pred             hheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChH
Confidence            99999999999999999 88888888899988888877  7888887777777666555 555557654

>PRK12382 putative transporter; Provisional

Probab=99.63  E-value=4.3e-14  Score=117.34  Aligned_cols=139  Identities=16%  Similarity=0.025  Sum_probs=116.9

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 024637          110 LYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEI  189 (265)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~  189 (265)
                      .+.......++.+++.++.|++.||+|+|+.+..+..+.+++.+.+...++.+..++..++.+++.+...+.......|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  330 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR  330 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            34455566677888999999999999999999888888888877776666766667777788888887778888888999


Q ss_pred             cCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          190 YPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       190 ~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      +|++.|+++.|+.+....+|..++|.+.|++.+..|+...+.+.+++.+++.++.++..
T Consensus       331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999888888887777776665543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.63  E-value=6.6e-15  Score=116.05  Aligned_cols=117  Identities=13%  Similarity=0.099  Sum_probs=105.4

Q ss_pred             CCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhh
Q 024637          105 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATI  184 (265)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  184 (265)
                      .+..-.+.+.+.+++..++.++.+|.++||+|||++++++....++..++.+.+.+...++..+++.|++.|- .++..+
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rA  143 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRA  143 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHH
Confidence            3445678888899999999999999999999999999999999999998888888886666669999877654 488999


Q ss_pred             hcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHh
Q 024637          185 YAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVT  222 (265)
Q Consensus       185 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~  222 (265)
                      +++|+++++.|+.+++.......+|-++||.++|++..
T Consensus       144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            99999999999999999999999999999999999987

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.62  E-value=5.7e-14  Score=116.17  Aligned_cols=154  Identities=15%  Similarity=0.050  Sum_probs=115.3

Q ss_pred             HHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcc
Q 024637           80 GAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ  159 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  159 (265)
                      ....++|.+.++.           +.+....+.......++.+++.++.|++.||+|+|+++..+..+.+++.+...  .
T Consensus       218 ~~~~~lp~~~~~~-----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~  284 (381)
T PRK03633        218 SLYGLMPLYLNHQ-----------GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S  284 (381)
T ss_pred             HHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h
Confidence            3344577777543           36666777778888889999999999999999999998888777777655443  1


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 024637          160 SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVL  239 (265)
Q Consensus       160 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i  239 (265)
                      . ...+...++.+++.....+....++.|..|++.++...+..+...++|+.++|.+.|++.+..++...|...+.+.++
T Consensus       285 ~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~  363 (381)
T PRK03633        285 Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFI  363 (381)
T ss_pred             h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            1 222334445555555667888888899999888888888888888899999999999999999988888887777765


Q ss_pred             HHHHHhcC
Q 024637          240 AIASSLLF  247 (265)
Q Consensus       240 ~~~~~~~~  247 (265)
                      ..+..++.
T Consensus       364 ~~~~~~~~  371 (381)
T PRK03633        364 YLLMLLRK  371 (381)
T ss_pred             HHHHHHhc
Confidence            55444433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.62  E-value=2.7e-14  Score=121.37  Aligned_cols=172  Identities=10%  Similarity=0.017  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchH------
Q 024637           65 LLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRK------  138 (265)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr------  138 (265)
                      +...+.++......+.+..+.|.+..+..          +.+..+.+...++..++.+++++++|+++||++||      
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r  324 (476)
T PLN00028        255 WILALTYGYSFGVELTMDNIIAEYFYDRF----------GLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGR  324 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchh
Confidence            33333344444445556667787764433          46777788888888999999999999999999875      


Q ss_pred             -HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHH
Q 024637          139 -LSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA  217 (265)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~  217 (265)
                       ....+..++.++..+.+....+.+..++..++.+++.+...+..+++.+++.| +.||++.|+.+..+++|++++|.+.
T Consensus       325 ~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~  403 (476)
T PLN00028        325 LWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLF  403 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHH
Confidence             23333333333434444444455555555566666666666777788888765 6899999999888778888887765


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          218 VGLVTSCHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       218 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      + ..+..++...+++.+++.++++++.++..
T Consensus       404 ~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        404 F-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             H-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            4 11233577788888777777766665553

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.62  E-value=4e-15  Score=129.77  Aligned_cols=145  Identities=12%  Similarity=0.052  Sum_probs=122.0

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcc------------------------
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ------------------------  159 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~------------------------  159 (265)
                      +.+..+.+++.+.+.++..++.++.+++.||.|||+.+.++.++++++.++.++.+                        
T Consensus        64 ~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~  143 (633)
T TIGR00805        64 KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSF  143 (633)
T ss_pred             CCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccc
Confidence            47778889999999999999999999999999999999999999999888776531                        


Q ss_pred             ---------------------------hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHH
Q 024637          160 ---------------------------SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMV  212 (265)
Q Consensus       160 ---------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~  212 (265)
                                                 ....+++.+++.|++.+..++...+++.|.+|++.|+...|+.+....+|..+
T Consensus       144 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~l  223 (633)
T TIGR00805       144 LCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAF  223 (633)
T ss_pred             cccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHH
Confidence                                       13456688999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc----------------------chhHHHHHHHHHHHHHHHHHhcCC
Q 024637          213 CPLVAVGLVTSC----------------------HLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       213 ~~~i~~~l~~~~----------------------~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      |+.+++++.+.+                      +|+..|++.+++.++.++..++++
T Consensus       224 G~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p  281 (633)
T TIGR00805       224 GYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP  281 (633)
T ss_pred             HHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            999999988643                      155667777777666665555554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.62  E-value=5e-14  Score=131.64  Aligned_cols=139  Identities=11%  Similarity=-0.006  Sum_probs=108.1

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHH---HHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhh
Q 024637          109 SLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV---SACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIY  185 (265)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  185 (265)
                      ..++..+++.+..++.++++|+++||+|||+++.....   +.++..+......+.+.+++++++.|++.+...+...++
T Consensus        53 ~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~  132 (1140)
T PRK06814         53 LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSI  132 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHh
Confidence            45666777788889999999999999999997543222   222222222234788899999999999999999999999


Q ss_pred             cccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcC
Q 024637          186 APEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  247 (265)
Q Consensus       186 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  247 (265)
                      +.+++|++.|+.++|+.++...+|.++||.++|++.+..+|+..+...++..++..++.+++
T Consensus       133 l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1140)
T PRK06814        133 LPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFI  194 (1140)
T ss_pred             hHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999888877733333334444433433

>PTZ00207 hypothetical protein; Provisional

Probab=99.62  E-value=9.7e-14  Score=118.67  Aligned_cols=160  Identities=11%  Similarity=0.067  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 024637           74 NVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL  153 (265)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~  153 (265)
                      .....|++..+.|.+..+.           +.+..+.++...+... .....++.|++.||+|+|+++.++.++.+++.+
T Consensus        39 ~~g~~y~fsv~s~~L~~~l-----------gls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~l  106 (591)
T PTZ00207         39 CTSFMYAFNLISGAMQARY-----------NLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTL  106 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHh-----------CcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            3445677777888776444           3666676766655332 334566789999999999999999999999998


Q ss_pred             HHhhc------chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHH-HHHHHHHHhhcch
Q 024637          154 PLVFH------QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVC-PLVAVGLVTSCHL  226 (265)
Q Consensus       154 ~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~-~~i~~~l~~~~~~  226 (265)
                      +..++      .+.+.+.+.+++.|++.+...+.....+.++|| +.||.+.|+......+|+++. ++..+++.  .++
T Consensus       107 l~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~  183 (591)
T PTZ00207        107 LFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNT  183 (591)
T ss_pred             HHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhH
Confidence            88775      577888888999999988888888888899997 679999999999999998764 44444443  246


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCC
Q 024637          227 RLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       227 ~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      ...+++.+++.++..++.+++.
T Consensus       184 ~~~fl~l~vl~~vv~ll~~~~v  205 (591)
T PTZ00207        184 SAYFFFLMSFALVVGILAIVFM  205 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhe
Confidence            6677777777666555555444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.61  E-value=7.7e-14  Score=116.01  Aligned_cols=141  Identities=11%  Similarity=0.098  Sum_probs=114.4

Q ss_pred             CCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhh
Q 024637          106 KDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIY  185 (265)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  185 (265)
                      +....+...++..+...++.+..|++.||+|||+.+.++.++.++........++.+..++..++.+++..........+
T Consensus       252 ~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  331 (396)
T TIGR00882       252 GTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKY  331 (396)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455677777778888899999999999999999999888888877776667777777777777877776666667778


Q ss_pred             cccccCCCcchhhHHH-HHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhc
Q 024637          186 APEIYPTPARTTGFGV-ASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL  246 (265)
Q Consensus       186 ~~e~~p~~~r~~~~g~-~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  246 (265)
                      ..+..|++.++++.+. .+....+|++++|.+.|++.+..|+...+.+.+++.++..+...+
T Consensus       332 ~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       332 ITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999888877 467778999999999999999999988998888887776665443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.61  E-value=1.5e-14  Score=115.77  Aligned_cols=177  Identities=18%  Similarity=0.191  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHH
Q 024637           61 IRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLS  140 (265)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  140 (265)
                      .+.++.+++.++.....+-++..++|.|.++++          +.+..+.+.......+.+.+.++++|+++||+|.+++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~f----------g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv  286 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQF----------GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV  286 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH
Confidence            356667777777777888889999999998776          6777787888888888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHH
Q 024637          141 MVLMFVSACIFLLPLVFH-------QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVC  213 (265)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~  213 (265)
                      +++....++++.......       .+.+..+...+..+++.+......+.+++..+|. +-|.+.|+....+++|++.-
T Consensus       287 ~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~l  365 (417)
T COG2223         287 TLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFL  365 (417)
T ss_pred             HHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccch
Confidence            999999988888777763       3455555556666777788888899999999987 47899999999999999999


Q ss_pred             HHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhcCC
Q 024637          214 PLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       214 ~~i~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      |...+...+..| +...|.++....+++.+..+...
T Consensus       366 p~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         366 PLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             hHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988 56677777777777777666554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.61  E-value=3.1e-14  Score=120.79  Aligned_cols=184  Identities=13%  Similarity=0.151  Sum_probs=121.7

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAI  130 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  130 (265)
                      ++++++++   +.++...+..++....++.+..|+|.|..+..          +.+..+.++...+..++..++.++.|+
T Consensus       253 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~----------g~s~~~~g~~~~~~~~~~~i~~~~~g~  319 (465)
T TIGR00894       253 PIKAIPKS---LPVWAIWFAIFGHFWLYTILPTYLPTFISWVL----------RVSGKENGLLSSLPYLFAWLCSIFAGY  319 (465)
T ss_pred             CHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CcChHHhHHHHHHHHHHHHHHHHHHHH
Confidence            45565543   34555566667777778888889999986543          466777788888888999999999999


Q ss_pred             HHhhhchHHH--------HHHHHH--HHHHHHHHHhh-cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhH
Q 024637          131 IVDKIGRKLS--------MVLMFV--SACIFLLPLVF-HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGF  199 (265)
Q Consensus       131 l~dr~grr~~--------~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~  199 (265)
                      ++||+++|+.        +..+..  +.++..+.... ..+.+..++...+.+.+.+...+.......|..|. .+|.+.
T Consensus       320 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~  398 (465)
T TIGR00894       320 LADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIK  398 (465)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHH
Confidence            9999865421        111111  11111212222 23333344444455555555555555666677776 799999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHHHHhcCC
Q 024637          200 GVASSLGKVGGMVCPLVAVGLVTSC---HLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       200 g~~~~~~~~g~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      |+.+..+.+|+.++|.+.|++.+..   +|...+.+.++..+++.++..+..
T Consensus       399 g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       399 GITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             HHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            9999999999999999999887653   366677777777777666555443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.61  E-value=5.4e-14  Score=118.38  Aligned_cols=119  Identities=15%  Similarity=0.108  Sum_probs=97.5

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHhhhhhhhhhhc
Q 024637          108 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-QSAVVTTLLLFGVRMCVTGTITVATIYA  186 (265)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~  186 (265)
                      ...+....+..++.+++.++.++++||+|+|+++.++.++.+++.+.+.+. .+.+..++..++.+++.+...+..++++
T Consensus       257 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  336 (437)
T TIGR00792       257 ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALV  336 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666788889999999999999999999999888888777666554 3445556666778888888888899999


Q ss_pred             ccccC-------CCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcch
Q 024637          187 PEIYP-------TPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL  226 (265)
Q Consensus       187 ~e~~p-------~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~  226 (265)
                      +|..|       ++.+|...|+.+.+..+|..+++.+.|++.+..|+
T Consensus       337 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       337 ADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             hhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88865       55689999999999999999999999999987665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.61  E-value=2.1e-13  Score=113.24  Aligned_cols=172  Identities=11%  Similarity=0.024  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHh-hhhHHHHHHHHHHhhhchHHHHH-HHHHH
Q 024637           70 LFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASL-AELPGLILSAIIVDKIGRKLSMV-LMFVS  147 (265)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~grr~~~~-~~~~~  147 (265)
                      ..+........+...+|.+..+..          +.+..+.++..+...+ +...+.+.+++ .||+|||+.++ .+.+.
T Consensus        23 ~~~~~~~~~~~~~p~~~~~l~~~~----------~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~   91 (393)
T PRK15011         23 VAFLTGIAGALQTPTLSIFLTDEV----------HARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLL   91 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHH
Confidence            344444444444555555553322          4677788887665545 44455555555 99999998754 45555


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcch--hhHHHHHhhhhHHHHHHHHHHHHHHhhcc
Q 024637          148 ACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPART--TGFGVASSLGKVGGMVCPLVAVGLVTSCH  225 (265)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~--~~~g~~~~~~~~g~~~~~~i~~~l~~~~~  225 (265)
                      ..+......+.++.+.+++...+.+...+...+....+..+..|++.|.  ...++.+...++|.+++|.+++++.+..|
T Consensus        92 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g  171 (393)
T PRK15011         92 GVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS  171 (393)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence            5565655666777766555544444444455677777777877665553  33467778888999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          226 LRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       226 ~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      |+..|+..++..++.++..++..||.+
T Consensus       172 w~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        172 FTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            999998888777776666665555543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.61  E-value=2.4e-14  Score=117.38  Aligned_cols=122  Identities=13%  Similarity=0.030  Sum_probs=106.1

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS-AVVTTLLLFGVRMCVTGTITVA  182 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~  182 (265)
                      +.+..+.+.......++.+++.++.+++.||++||+.+..+.++.+++.+.+.+.++ .+..++..++.+++.+...+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  322 (365)
T TIGR00900       243 GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQ  322 (365)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            466677788888888999999999999999999999998887777777776666553 6667777888898888888999


Q ss_pred             hhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcc
Q 024637          183 TIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH  225 (265)
Q Consensus       183 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~  225 (265)
                      .+++.|.+|++.|+++.|+.+...++++.++|.+.|++.+..|
T Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       323 GTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999988654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.60  E-value=3.8e-14  Score=118.32  Aligned_cols=165  Identities=12%  Similarity=0.133  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHH-H
Q 024637           63 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLS-M  141 (265)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~-~  141 (265)
                      .++.....+++....++++..|+|.++++.+         .+.+....+.......++.+++.++.|+++||++||+. .
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~---------~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~  313 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFN---------QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHT  313 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHH
Confidence            3445555566667778888899999996532         02455666777888889999999999999999997764 3


Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHH
Q 024637          142 VLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLV  221 (265)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~  221 (265)
                      ....++..++..+.....+....++...+.+++.....+..+....|.+|++.|++++|+.+..+++|++++|.+.|.+.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~  393 (412)
T TIGR02332       314 ALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILK  393 (412)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence            33443444433222222222222222222333333334455566678899999999999999999999999999999999


Q ss_pred             hhcc-hhHHHHHHHHH
Q 024637          222 TSCH-LRLAVILFEVV  236 (265)
Q Consensus       222 ~~~~-~~~~~~~~~~~  236 (265)
                      +..| |...+.+.+++
T Consensus       394 ~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       394 DATGSFNSGLWFVAAL  409 (412)
T ss_pred             ccCCCCchhHHHHHHH
Confidence            9875 66666554443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.60  E-value=1.2e-13  Score=111.43  Aligned_cols=168  Identities=12%  Similarity=0.108  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHH
Q 024637           69 VLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSA  148 (265)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~  148 (265)
                      ...+......|....|+..++++..          +.+...+.+....++++.++|++++|+++|| +.|+.+.....+.
T Consensus       218 ~~t~l~~~g~F~~ftYi~P~L~~v~----------g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~  286 (394)
T COG2814         218 LATFLFMTGHFALYTYIRPFLESVA----------GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLL  286 (394)
T ss_pred             HHHHHHHcchhhhHHhHHHHHHHcc----------CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHH
Confidence            3333334444444445555554444          6888899999999999999999999999999 8888888887777


Q ss_pred             HHHHHHHhh-cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchh
Q 024637          149 CIFLLPLVF-HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR  227 (265)
Q Consensus       149 ~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~  227 (265)
                      .+..+.+.+ ..+.+...+..++.++.............++ .-++.+..+.++.....++|..+|..++|.+.++.|+.
T Consensus       287 a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~  365 (394)
T COG2814         287 ALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYA  365 (394)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence            777766665 5555666666666777766666666666667 44567999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC
Q 024637          228 LAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       228 ~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      ...++.+.+.+++.++.++..
T Consensus       366 ~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         366 ATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888888887777777766554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.60  E-value=4.3e-14  Score=121.18  Aligned_cols=143  Identities=21%  Similarity=0.168  Sum_probs=124.3

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhccc
Q 024637          109 SLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPE  188 (265)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e  188 (265)
                      +.++..+...++..+++++.|+++|++|||+.++++.++..++.++..++++.+.+++.+++.|++.|+...+...+++|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            44788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHHhcCCccccc
Q 024637          189 IYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC--HLRLAVILFEVVFVLAIASSLLFPFETMG  253 (265)
Q Consensus       189 ~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  253 (265)
                      ..|++.||...++.+....+|..++ ++.+......  +|+..+.+..+.+++..+. .++.||+.+
T Consensus       170 iap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~  234 (513)
T KOG0254|consen  170 IAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPR  234 (513)
T ss_pred             cCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence            9999999999999999999888877 5555555443  7887777777777766666 555567654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.60  E-value=1.2e-13  Score=129.27  Aligned_cols=116  Identities=11%  Similarity=-0.034  Sum_probs=100.5

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHHHHhhhhhhhhh
Q 024637          108 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---FHQSAVVTTLLLFGVRMCVTGTITVATI  184 (265)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~  184 (265)
                      ...++..++..++.+++++++|+++||+|||++++++.++.++..++..   ...+.+.+++.+++.|++.+...+...+
T Consensus        47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  126 (1146)
T PRK08633         47 ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYG  126 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHh
Confidence            3456777788888999999999999999999999988776655544433   2466788889999999999999999999


Q ss_pred             hcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh
Q 024637          185 YAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS  223 (265)
Q Consensus       185 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~  223 (265)
                      +++|++|++.|+.++|+......+|.+++|.+++++.+.
T Consensus       127 ~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        127 IIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999876

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.60  E-value=1.3e-13  Score=115.40  Aligned_cols=149  Identities=13%  Similarity=0.041  Sum_probs=134.0

Q ss_pred             cCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHhhhh
Q 024637          102 VDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--HQSAVVTTLLLFGVRMCVTGTI  179 (265)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~  179 (265)
                      ....++.+.+++.+....|.+++.+.+|++.||+|.|+++..+.++.+++.++..+  ..+.+.+++.+++.|++.+..+
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~  146 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF  146 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence            34567788899999999999999999999999999999999999999999888777  3445577899999999999999


Q ss_pred             hhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          180 TVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       180 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      +....+.+.+.|+.+|++..++......+|.+++-.+.|++.+. .||...|++.+++.++..++.+++..+
T Consensus       147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d  218 (466)
T KOG2532|consen  147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD  218 (466)
T ss_pred             hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999998 999999999999998877776665543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.60  E-value=1.7e-13  Score=113.20  Aligned_cols=185  Identities=17%  Similarity=0.169  Sum_probs=129.8

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHH
Q 024637           53 FMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIV  132 (265)
Q Consensus        53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  132 (265)
                      .+++|++....+++..++.......+|.+   .+.|.++.+          +.+....+...++..+++++.-.+.+++.
T Consensus       201 ~~llk~~~~~~Fll~~~l~~~~~~~~~~f---~~~yl~~~g----------g~~~~~~g~~~~l~~~aEi~~f~~~~~~~  267 (400)
T PF03825_consen  201 LKLLKNPRFLVFLLAAFLIGISHAAYYTF---FSIYLQELG----------GYSGSTIGILWALGVVAEIPFFFFSGRFL  267 (400)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcc----------cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45665544444444333333333333333   444554443          24445667677787889999999999999


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHH----HHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhh
Q 024637          133 DKIGRKLSMVLMFVSACIFLLPLVFH-QSAVVTTLLL----FGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGK  207 (265)
Q Consensus       133 dr~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~  207 (265)
                      .|+|.|++++++.+..++=..+.+.. ++.+..+...    .+.|+..+........++.+..|++.|+++.++.+....
T Consensus       268 ~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~  347 (400)
T PF03825_consen  268 KRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSF  347 (400)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence            99999999999999999998888775 4444433333    458888888899999999999999999999999987765


Q ss_pred             -HHHHHHHHHHHHHHhhcchhHH------HHHHHHHHHHHHHHHhcCCcc
Q 024637          208 -VGGMVCPLVAVGLVTSCHLRLA------VILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       208 -~g~~~~~~i~~~l~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~  250 (265)
                       +|..+|.+++|++.+.+|.+..      +.+.+++.++..++.+++.+|
T Consensus       348 Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  348 GLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             hHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence             9999999999999998875533      333444444444444444433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.60  E-value=2.8e-14  Score=116.73  Aligned_cols=184  Identities=16%  Similarity=0.088  Sum_probs=150.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh-chH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI-GRK  138 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr  138 (265)
                      +.+.++.++..-+..-++||++...+..|+.....      +..+.+.+++.-....+..---+..+++||++||+ |+|
T Consensus        19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~------~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~   92 (498)
T COG3104          19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLG------DGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR   92 (498)
T ss_pred             CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcc------ccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            44677788888899999999998777777644331      11346666666666666555567889999999995 999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC--cchhhHHHHHhhhhHHHHHHH
Q 024637          139 LSMVLMFVSACIFLLPLVFHQ--SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTP--ARTTGFGVASSLGKVGGMVCP  214 (265)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~g~~~~~  214 (265)
                      +.++.+.+++.++.+++....  +...+++...+..+|.|..=+...+++.|.+|++  +|-.++++.+...|+|+.++|
T Consensus        93 ~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p  172 (498)
T COG3104          93 RTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAP  172 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHH
Confidence            999999999999999998863  5667777777778999999999999999999864  488889999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCc
Q 024637          215 LVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  249 (265)
Q Consensus       215 ~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  249 (265)
                      ++.+++.+..||...|...++...++.+..+..++
T Consensus       173 ~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r  207 (498)
T COG3104         173 IITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR  207 (498)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence            99999999999999998888888888777766653

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.59  E-value=2.2e-13  Score=115.91  Aligned_cols=145  Identities=14%  Similarity=0.119  Sum_probs=120.5

Q ss_pred             CCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHHHHHhhhh
Q 024637          105 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-----HQSAVVTTLLLFGVRMCVTGTI  179 (265)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~  179 (265)
                      .++..+++......+..++.++++|.++||+.||++++.+.++.++..+.+..     ..+.+.++++.++.|++.....
T Consensus        42 ~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~  121 (524)
T PF05977_consen   42 GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN  121 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence            55677788888888899999999999999999999999988877655443332     3567888888899999999999


Q ss_pred             hhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCc
Q 024637          180 TVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  249 (265)
Q Consensus       180 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  249 (265)
                      |...+.++|+.|+++...+.++.....++..++||.++|.+....|....|.+-++..++..++.....+
T Consensus       122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~  191 (524)
T PF05977_consen  122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKP  191 (524)
T ss_pred             HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            9999999999999999999999999999999999999999999888888887776665555544444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.59  E-value=2.2e-13  Score=112.69  Aligned_cols=136  Identities=10%  Similarity=-0.058  Sum_probs=108.8

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +.+....+....+..++.++..++.|++.||+|+|+.+.++.++.+++.+.+.+.++.+..++..++.|++.+...+...
T Consensus       236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  315 (382)
T PRK11128        236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAM  315 (382)
T ss_pred             CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36667778888888888889999999999999999999999988888887777778888888888888988888888888


Q ss_pred             hhcccccCCCcchhhHHHHHhhh-hHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 024637          184 IYAPEIYPTPARTTGFGVASSLG-KVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAI  241 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~-~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~  241 (265)
                      .+..+. +++++++..++.+... .+|..++|.++|.+.|..|. ..++..+++.+++.
T Consensus       316 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        316 RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            888886 5555788888886444 47889999999999999886 45555555544443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.59  E-value=1.5e-13  Score=117.00  Aligned_cols=136  Identities=14%  Similarity=0.074  Sum_probs=112.1

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 024637          108 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAP  187 (265)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  187 (265)
                      .+..|..+...++..++.++.|+++|.+|||..++.+.++..++.++...+++...++....+.|++.|.. ......++
T Consensus        78 ~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~-~~~~~~is  156 (599)
T PF06609_consen   78 DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQ-ELAALAIS  156 (599)
T ss_pred             ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHH-HHHHHHHH
Confidence            45567777888899999999999999999999999999999999999999999998999999999986655 45566689


Q ss_pred             cccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 024637          188 EIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASS  244 (265)
Q Consensus       188 e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~  244 (265)
                      |+.|.+.|..+.++.....-+....+|.+...+....+|+|.+++..+...++++..
T Consensus       157 El~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~  213 (599)
T PF06609_consen  157 ELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLI  213 (599)
T ss_pred             HhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHH
Confidence            999999998888777655445556778887776666789999988887766655443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10504 putative transporter; Provisional

Probab=99.58  E-value=4.4e-13  Score=114.00  Aligned_cols=123  Identities=11%  Similarity=0.040  Sum_probs=99.2

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH---QSAVVTTLLLFGVRMCVTGTIT  180 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~  180 (265)
                      +.++...++......++..++.++.|++.||+|||+++..+.++.++..+++.+.   .+.+...+..++.|++.+...+
T Consensus       293 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  372 (471)
T PRK10504        293 GFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFS  372 (471)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH
Confidence            4666777777777778888888999999999999999998888777776655542   2233334445566777777788


Q ss_pred             hhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcch
Q 024637          181 VATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL  226 (265)
Q Consensus       181 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~  226 (265)
                      ....+..+.+|++.|+.+.|+.++...+|..+|+.+.|.+.+..++
T Consensus       373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            8888999999999999999999999999999999999999887654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.58  E-value=1.6e-13  Score=116.73  Aligned_cols=143  Identities=13%  Similarity=0.059  Sum_probs=126.6

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +.++...+++....++|.++|+++.+++.+|+++++++..+.++.+++.+.+.+.++.+...+..++.|++.........
T Consensus       250 ~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~  329 (524)
T PF05977_consen  250 GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLN  329 (524)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677889999999999999999999999999999999999999999988888889988888888899999888888889


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhc
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL  246 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  246 (265)
                      +.+.+..|++.||+++++.++....+..+|.++.|.+.+..|....+.+.++..+++.++.+.
T Consensus       330 t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  330 TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988887776666555555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.58  E-value=2.3e-13  Score=112.91  Aligned_cols=179  Identities=16%  Similarity=-0.015  Sum_probs=117.0

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHH-hhhhHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIAS-LAELPGLILSA  129 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g  129 (265)
                      +++++++++..+..+...++...   .......+.+.+.++.           +.+..+.++...... +..+++.++.|
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~l~~~-----------G~s~~~ig~~~~~~~~~~~~~g~~~~g  265 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAM---TAVSGFGLSKLYLVDA-----------GWPLEWIGRLGMAGGAVTVLLGCGGGA  265 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHH---HHHHHHHHhhHHHHhc-----------CCCHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34556654443333333333222   2222333455566443           477777788777665 45667789999


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC-CcchhhHHHH
Q 024637          130 IIVDKIGRKLSMVLMFVSACIFLLPLVF------HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPT-PARTTGFGVA  202 (265)
Q Consensus       130 ~l~dr~grr~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~  202 (265)
                      ++.||+|+|+.+.++.++.++..+....      ..+....+....+.+++.+...+.......+..++ +.+++.+++.
T Consensus       266 ~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~  345 (390)
T TIGR02718       266 WLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAV  345 (390)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            9999999999988777665333222211      12223333333444555666667777777677665 8899999999


Q ss_pred             HhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 024637          203 SSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIAS  243 (265)
Q Consensus       203 ~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~  243 (265)
                      +...++|..++|.+.|++.+..|+...+...+++.+++.+.
T Consensus       346 ~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       346 QSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999989877777766666555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.58  E-value=9e-14  Score=113.32  Aligned_cols=147  Identities=13%  Similarity=0.065  Sum_probs=125.5

Q ss_pred             CchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhc
Q 024637          107 DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYA  186 (265)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  186 (265)
                      ....+...++..+.+++...+..++.+|+|.|+.++++.+++.+-.+...+.++++.+.+...+.++-.+.......-|+
T Consensus       258 ~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI  337 (412)
T PF01306_consen  258 NQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYI  337 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcchhhHHHHH-hhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccc
Q 024637          187 PEIYPTPARTTGFGVAS-SLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  253 (265)
Q Consensus       187 ~e~~p~~~r~~~~g~~~-~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  253 (265)
                      ++.+|++..++...+.. ....+|.++.+.++|.+.|+.|.+..+++.+.+.+...++..+..++.++
T Consensus       338 ~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  338 TAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            99999999999999875 55569999999999999999999889999988888777777776654443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.58  E-value=3.6e-13  Score=114.83  Aligned_cols=176  Identities=14%  Similarity=0.114  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh-----c
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI-----G  136 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g  136 (265)
                      ++.+..++..+......+.....+|.+.++.+           .+..+++....+ ... .++.+++|+++||+     |
T Consensus        12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g-----------~~~~~ig~~~~~-~~~-~~~~~l~gpl~Dr~~~~~~G   78 (491)
T PRK11010         12 PNSAILLILGFASGLPLALTSGTLQAWMTVEN-----------IDLKTIGFFSLV-GQA-YVFKFLWSPLMDRYTPPFLG   78 (491)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHH-HHH-HHHHHHHHHHHHcccccCCC
Confidence            34555556666666666666777788875543           555566654222 222 26889999999999     9


Q ss_pred             hHHH-HHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHH
Q 024637          137 RKLS-MVLMFVSACIFLLPLVFH---QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMV  212 (265)
Q Consensus       137 rr~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~  212 (265)
                      ||+. +.++.+..+++...+.+.   .+.+.+.+..++.+++.+...+...++..|++|+++|+.+.++......+|..+
T Consensus        79 rrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ll  158 (491)
T PRK11010         79 RRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLV  158 (491)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH
Confidence            9885 556766666666665553   456667777888888888888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          213 CPLVAVGLVT-SCHLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       213 ~~~i~~~l~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      ++.+.+++.+ ..||+..|++.+++.++..+..++. ||+
T Consensus       159 g~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~-~e~  197 (491)
T PRK11010        159 SGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLA-PEP  197 (491)
T ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence            9999999998 4699999998887777665555543 454

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.57  E-value=1.9e-13  Score=114.51  Aligned_cols=177  Identities=12%  Similarity=0.068  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH
Q 024637           63 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV  142 (265)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  142 (265)
                      .++.....++.....+.....+.|.+.++..          +.+..+.++..++..++..+++++.|+++||+|||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~   80 (420)
T PRK09528         11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDIN----------GLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLL   80 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            4444444555555555566677777775432          578889999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhh-c-chhHH--HHHHHHHHHHHHhhhhhhhhhhcccccC--CCcchhhHHHHHhhhhHHHHHHHHH
Q 024637          143 LMFVSACIFLLPLVF-H-QSAVV--TTLLLFGVRMCVTGTITVATIYAPEIYP--TPARTTGFGVASSLGKVGGMVCPLV  216 (265)
Q Consensus       143 ~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~e~~p--~~~r~~~~g~~~~~~~~g~~~~~~i  216 (265)
                      ++..+.++....... . .....  ......+.++..+...........++.+  .+.++..+|......++|..++|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~  160 (420)
T PRK09528         81 WIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFI  160 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHH
Confidence            766555544322111 1 11100  1111122222233322222222233322  2356778888889999999999999


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          217 AVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       217 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      .+.+.+. +|+..++..+++.++..++.++..++
T Consensus       161 ~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~  193 (420)
T PRK09528        161 AGILFNI-NPQINFWLGSGSALILLVLLFFAKPD  193 (420)
T ss_pred             HHHHHhc-CchHhHHHHHHHHHHHHHHHhccccc
Confidence            9998864 77888877777766666665555433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.57  E-value=3.8e-13  Score=114.68  Aligned_cols=145  Identities=12%  Similarity=0.065  Sum_probs=108.3

Q ss_pred             CCCCchHHHHH-HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH---hhc-chhHHHHHHHHHHHHHHhhh
Q 024637          104 KSKDNSLYVDV-FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL---VFH-QSAVVTTLLLFGVRMCVTGT  178 (265)
Q Consensus       104 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~g~~~~~~  178 (265)
                      +.+..+.+... ....++.+++.+++|+++||+|+|+.+.++.++.++..+.+   ... ++.+.+.+..++..+..+..
T Consensus       254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~  333 (491)
T PRK11010        254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG  333 (491)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            47777777776 45567889999999999999999988776665555443322   222 33333344444544445555


Q ss_pred             hhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          179 ITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       179 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      .+...++..++.|++.+++.+|+.+...++|..+++.+.|++.+..||...|.+.+++.+++.+..+++.
T Consensus       334 ~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        334 TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667888889999999999999999999999999999999999999998888877777777766666554

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.57  E-value=1.9e-13  Score=113.70  Aligned_cols=175  Identities=14%  Similarity=0.119  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH
Q 024637           63 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV  142 (265)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  142 (265)
                      .++.+....+.....+.....++|.+..+..          +.+..+.++..++..++..++.++.|+++||+|||+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~   72 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVN----------GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLL   72 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            3444555555556666666677777765432          577888999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHh---hcc-----hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHH
Q 024637          143 LMFVSACIFLLPLV---FHQ-----SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCP  214 (265)
Q Consensus       143 ~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~  214 (265)
                      .+....++......   ..+     ..+..++..++.+++.+...+....+..+..+  .++..+|.....+++|..++|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~  150 (396)
T TIGR00882        73 WIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCA  150 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHH
Confidence            77665554433221   111     11223344555666666666666666655432  345667788888899999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          215 LVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       215 ~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      .+++.+.+ .+|+..|.+.+.+.++..++.+...++
T Consensus       151 ~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~  185 (396)
T TIGR00882       151 SIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPK  185 (396)
T ss_pred             HHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99998765 488888888777777666555544444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.57  E-value=4.9e-13  Score=111.42  Aligned_cols=170  Identities=14%  Similarity=0.057  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh-----chHH-HH
Q 024637           68 WVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI-----GRKL-SM  141 (265)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~-~~  141 (265)
                      +.+++.+...+.....-+|.++++.+           .+.+++++...+...  .+..+++|+++||+     |||| .+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g-----------~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l   71 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEG-----------LDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWL   71 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHH
Confidence            34455566666666677888887664           888888888666544  68899999999999     7765 67


Q ss_pred             HHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHH
Q 024637          142 VLMFVSACIFLLPLVFH---QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAV  218 (265)
Q Consensus       142 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~  218 (265)
                      .++.++.+++...+.+.   .+.+.+++..++.+++.+...+...+++.|.+|+++|+.+.++......+|..+++.+.+
T Consensus        72 ~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~  151 (402)
T PRK11902         72 LLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL  151 (402)
T ss_pred             HHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH
Confidence            77777777777666664   345555555566667777777889999999999999999999999888899999999999


Q ss_pred             HHHhh-cchhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          219 GLVTS-CHLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       219 ~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      ++.+. .||+..+++.+++.++..+...+. ||+
T Consensus       152 ~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~-~e~  184 (402)
T PRK11902        152 WLADRVLGWGNTYLLMAGLMLAGALTTLWA-PEP  184 (402)
T ss_pred             HHHhcccCHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence            98885 489999988887776655544333 444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.57  E-value=7.1e-14  Score=112.89  Aligned_cols=195  Identities=14%  Similarity=0.075  Sum_probs=128.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhc
Q 024637           57 SRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIG  136 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g  136 (265)
                      +.++.+...+.-+..+.-....+.+.+..|.+.....+-+++.   -+.++...+....+..++.++|.+++|++.||+|
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~---g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~G  112 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESG---GHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFG  112 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCC---CcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3444454444444444444444555554454432222111111   2355666677888888999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhc-----c--hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHH
Q 024637          137 RKLSMVLMFVSACIFLLPLVFH-----Q--SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVG  209 (265)
Q Consensus       137 rr~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g  209 (265)
                      ||+++...++++.++.++....     +  -.+++...+++.|+|.|+-+|...+..+|....+.||.-.+........|
T Consensus       113 RK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~G  192 (538)
T KOG0252|consen  113 RKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFG  192 (538)
T ss_pred             chhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchh
Confidence            9999999999999998866651     1  13567788999999999999999999999999999999998887777766


Q ss_pred             HHHHHHHHHHHHh----hcc----------hhHHHHHHHHHHHHHHHHHhcCCcccccc
Q 024637          210 GMVCPLVAVGLVT----SCH----------LRLAVILFEVVFVLAIASSLLFPFETMGR  254 (265)
Q Consensus       210 ~~~~~~i~~~l~~----~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (265)
                      ...|.++.-.+..    ..+          .|...+.++++..+..+...+..|||++-
T Consensus       193 ilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y  251 (538)
T KOG0252|consen  193 ILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARY  251 (538)
T ss_pred             HhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhH
Confidence            5555544443332    111          12223334444444444444556787653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.56  E-value=1.6e-13  Score=114.35  Aligned_cols=175  Identities=17%  Similarity=0.187  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSM  141 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  141 (265)
                      +.++++.+.+++....+.++..++|.+.++..            +.........+..+...++.+++|+++||+|+++++
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~------------~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl  319 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF------------PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVT  319 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHH
Confidence            34556666666666677777778888875432            222333334455677888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh-c-----chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC---------------------Cc
Q 024637          142 VLMFVSACIFLLPLVF-H-----QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPT---------------------PA  194 (265)
Q Consensus       142 ~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~---------------------~~  194 (265)
                      .++.+.+.++.+.+.. .     .+.+...+..+...++.|...+..+.++++.+|+                     ++
T Consensus       320 ~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~  399 (462)
T PRK15034        320 LINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTE  399 (462)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHH
Confidence            9888877776644322 1     2344444444445566677778888888888875                     15


Q ss_pred             chhhHHHHHhhhhHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHhcCC
Q 024637          195 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL-RLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       195 r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      -|.+.|+....+.+|+++.|.+.|...+..|. ...+..+.+..+++.++.++..
T Consensus       400 ~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        400 TAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             HHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            67888999999999999999999998887664 4456666677777777777665

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.55  E-value=2.4e-13  Score=109.10  Aligned_cols=144  Identities=16%  Similarity=0.209  Sum_probs=121.6

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +.+..+..+.....++..++|+++.|++.||+|.|+++.++.++..+.++...+......+.++..+.|++.|+.++..-
T Consensus       284 gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SR  363 (438)
T COG2270         284 GLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSR  363 (438)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHH
Confidence            58888999999999999999999999999999999999999998888888777766666677778889999999999999


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHHhcC
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAV-ILFEVVFVLAIASSLLF  247 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~i~~~~~~~~  247 (265)
                      ++..++.|+++-++.+|+++..++.++.+||++.+.+.+..|....- ....++..++.++.+..
T Consensus       364 Sy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v  428 (438)
T COG2270         364 SYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV  428 (438)
T ss_pred             HHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence            99999999999999999999999999999999999999887764433 33333344444444333

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.55  E-value=7.7e-13  Score=110.89  Aligned_cols=179  Identities=10%  Similarity=0.028  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHh----hhchH
Q 024637           63 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVD----KIGRK  138 (265)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr  138 (265)
                      +++......++..+.+.....+++.|....           +.+....+....+..+..++..++.|+++|    |+|||
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~~l-----------g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR   73 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYVQEL-----------GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR   73 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh
Confidence            444445555555555555555566566443           477788888889999999999999999999    59999


Q ss_pred             HHHHHH-HHHHHHHHHHHhhcchh-----------------HHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcc--hhh
Q 024637          139 LSMVLM-FVSACIFLLPLVFHQSA-----------------VVTTLLLFGVRMCVTGTITVATIYAPEIYPTPAR--TTG  198 (265)
Q Consensus       139 ~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r--~~~  198 (265)
                      +.++++ .+...++.+++.+..+.                 +..++...+..++.+...++..++++|++|+++|  +.+
T Consensus        74 rp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a  153 (477)
T TIGR01301        74 RPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIA  153 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHH
Confidence            998875 55555555555554332                 2233334455567777888899999999999865  578


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHH--Hhhc-------------chhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          199 FGVASSLGKVGGMVCPLVAVGL--VTSC-------------HLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       199 ~g~~~~~~~~g~~~~~~i~~~l--~~~~-------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      .++.+.+.++|+++++.++++.  .+..             +.+..|.+.+++.++..++..+..+|..
T Consensus       154 ~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       154 NAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            8888999999999999998865  2211             3456777777777777777777777754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00896 CynX cyanate transporter

Probab=99.55  E-value=1.6e-13  Score=112.37  Aligned_cols=146  Identities=10%  Similarity=-0.039  Sum_probs=118.6

Q ss_pred             HHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcch
Q 024637           81 AVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS  160 (265)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~  160 (265)
                      ....+|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||+++.++.++..++.+.. ..++
T Consensus        19 ~~~~lp~l~~~~-----------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~   86 (355)
T TIGR00896        19 VGPLLPQIRSAL-----------GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG   86 (355)
T ss_pred             CcccHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc
Confidence            345566666443           4788889999999999999999999999999999999999988877777666 5677


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH
Q 024637          161 AVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH--LRLAVILFEVVFV  238 (265)
Q Consensus       161 ~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~  238 (265)
                      .+.+++.+++.|++.+...+....++.|.+| ++|+.+.++.+....+|..+++.+.+.+.+..+  |+..+...+++.+
T Consensus        87 ~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896        87 TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            7777888889999888877777888888887 579999999999999999999999998887653  6666665555444


Q ss_pred             H
Q 024637          239 L  239 (265)
Q Consensus       239 i  239 (265)
                      +
T Consensus       166 ~  166 (355)
T TIGR00896       166 L  166 (355)
T ss_pred             H
Confidence            3

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.55  E-value=5.1e-13  Score=114.97  Aligned_cols=195  Identities=27%  Similarity=0.409  Sum_probs=149.9

Q ss_pred             ccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHH
Q 024637           50 SSFFMLFSR-KLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILS  128 (265)
Q Consensus        50 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (265)
                      ..+.++++. +.++.++..++.++.....+|+.......+.                  .+.+....+.+....++....
T Consensus       309 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg------------------~~~~~~~~~~~~~~~p~~~~~  370 (521)
T KOG0255|consen  309 ISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLG------------------GNIYLNFTLSGLVELPAYFRN  370 (521)
T ss_pred             CchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcC------------------chHHHHHHHHHHHHhhHHHHH
Confidence            457777764 4778888888888888888888876666544                  455666666666788888888


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhh
Q 024637          129 AIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSA---VVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSL  205 (265)
Q Consensus       129 g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~  205 (265)
                      +...|++|||.....+..+..++++...+....   +...+...+..++.+..+...+.+.+|++|+..|..+.+.....
T Consensus       371 ~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~  450 (521)
T KOG0255|consen  371 GLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAA  450 (521)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            999999999999999999999999888874332   24556666666777778888899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccccchhhhhhhc
Q 024637          206 GKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAI  263 (265)
Q Consensus       206 ~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  263 (265)
                      ..+|++++|.+...... ......+..++....+..++...+.||++++++.+..++.
T Consensus       451 ~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~  507 (521)
T KOG0255|consen  451 ARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDA  507 (521)
T ss_pred             HHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHH
Confidence            99999999999865544 2333333335667777777776777899988776654443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.55  E-value=6.3e-14  Score=118.47  Aligned_cols=166  Identities=6%  Similarity=0.018  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh--chHHHHHH
Q 024637           66 LLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRKLSMVL  143 (265)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~~  143 (265)
                      ......+.....++....++|.|.++.           +.+....+...++.+++.+++.++.|+++||.  ++|+...+
T Consensus       245 ~~~~~~~l~~~~~~~~~~~l~~~~~~~-----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  313 (455)
T TIGR00892       245 VYLSGNVIMFLGFFAPIIFLVPYAKDK-----------GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLF  313 (455)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHH
Confidence            333334444455556666777777443           46677888888888899999999999999973  34433333


Q ss_pred             --HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHH
Q 024637          144 --MFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLV  221 (265)
Q Consensus       144 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~  221 (265)
                        +.++.+++.+.....++.+.+++..++.|++.+...+...+++.|.+|++.+++++|+.+...++|++++|.++|.+.
T Consensus       314 ~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  393 (455)
T TIGR00892       314 SFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV  393 (455)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence              333334444444456677777777888888888888889999999999999999999999999999999999999999


Q ss_pred             hhcc-hhHHHHHHHHHHHHHHH
Q 024637          222 TSCH-LRLAVILFEVVFVLAIA  242 (265)
Q Consensus       222 ~~~~-~~~~~~~~~~~~~i~~~  242 (265)
                      +..+ +...+.+.+++.+++.+
T Consensus       394 ~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       394 DATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             hhcCCcchHHHHhhHHHHHHHH
Confidence            8774 66777766666555544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.54  E-value=3.6e-13  Score=111.49  Aligned_cols=125  Identities=21%  Similarity=0.195  Sum_probs=102.0

Q ss_pred             hhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhH--------HHHHHHHHHHHHHhhhhhhhhhhccccc
Q 024637          119 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAV--------VTTLLLFGVRMCVTGTITVATIYAPEIY  190 (265)
Q Consensus       119 ~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~e~~  190 (265)
                      ++..+++++.|+++||+|||+++.++.++..++.++..+.++..        .+++.+++.|++.+...+....++.|.+
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~  125 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYA  125 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcC
Confidence            44457889999999999999999999999999988888766643        4667788899888888889999999999


Q ss_pred             CCCcchhhHHHHHhhhhHHHHHHHHHHHHHH--------hhcchhHHHHHHHHHHHHHHHH
Q 024637          191 PTPARTTGFGVASSLGKVGGMVCPLVAVGLV--------TSCHLRLAVILFEVVFVLAIAS  243 (265)
Q Consensus       191 p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~--------~~~~~~~~~~~~~~~~~i~~~~  243 (265)
                      |+++|+...++.+....+|..+++.+.+.+.        +..+|+..+.+.+++.++...+
T Consensus       126 ~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       126 PPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL  186 (394)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998877654        3457887777666555544433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.54  E-value=3.8e-13  Score=115.39  Aligned_cols=199  Identities=16%  Similarity=0.221  Sum_probs=139.6

Q ss_pred             cccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFA-NVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSA  129 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  129 (265)
                      .+++++++..+++..+.+..... +...+.....|.+.+.+..+           .+... .....+.++...++.+++.
T Consensus       283 ~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g-----------~~~~~-~~~~~~~~~v~~~~t~~~~  350 (513)
T KOG0254|consen  283 SWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAG-----------LKSDT-FLASIILGVVNFLGTLVAT  350 (513)
T ss_pred             cHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcC-----------CCCch-HHHHHHHHHHHHHHHHHHH
Confidence            35666665566666655555444 33444556677777775554           22222 5566667788888889999


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHhhc-----c-------hhHHHHHHHHH-HHHHHhhhhhhhhhhcccccCCCcch
Q 024637          130 IIVDKIGRKLSMVLMFVSACIFLLPLVFH-----Q-------SAVVTTLLLFG-VRMCVTGTITVATIYAPEIYPTPART  196 (265)
Q Consensus       130 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~-----~-------~~~~~~~~~~~-~g~~~~~~~~~~~~~~~e~~p~~~r~  196 (265)
                      ++.||+|||+.++.+...+.++.+++...     .       ..+..++..++ ...+..+..++.+.+.+|.+|.+.|+
T Consensus       351 ~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~  430 (513)
T KOG0254|consen  351 YLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRS  430 (513)
T ss_pred             HHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHh
Confidence            99999999999999999999988876641     1       11222222222 22233334477788999999999999


Q ss_pred             hhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH-HHhcCCccccccchhhhhh
Q 024637          197 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIA-SSLLFPFETMGRELKDTVD  261 (265)
Q Consensus       197 ~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~  261 (265)
                      .+.++.....++.+.+.......+.+..+....+..++.++.+... ..+++.|||++++.++.++
T Consensus       431 ~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~  496 (513)
T KOG0254|consen  431 KGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE  496 (513)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence            9999999999988777777777766665434567777777776666 7788889999999887664

>TIGR00901 2A0125 AmpG-related permease

Probab=99.54  E-value=4.1e-13  Score=110.06  Aligned_cols=146  Identities=16%  Similarity=0.118  Sum_probs=110.6

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh-----chHHHH-HHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHH
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKI-----GRKLSM-VLMFVSACIFLLPLVFH---QSAVVTTLLLFGVRMC  174 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~  174 (265)
                      +.+..+.++.... .+...+ .+++|+++||+     |||+.+ +.+.++.+++...+.+.   .+.+.+....++.+++
T Consensus        19 g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~   96 (356)
T TIGR00901        19 NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFF   96 (356)
T ss_pred             CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence            3777777777544 333333 88999999998     888874 56666666666555554   3444555555566666


Q ss_pred             HhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcc--------hhHHHHHHHHHHHHHHHHHhc
Q 024637          175 VTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH--------LRLAVILFEVVFVLAIASSLL  246 (265)
Q Consensus       175 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~--------~~~~~~~~~~~~~i~~~~~~~  246 (265)
                      .+...+...++++|++|+++|+.+.++.....++|.++++.+.+.+.+..+        |+..+++.++..++..+..++
T Consensus        97 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~  176 (356)
T TIGR00901        97 SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF  176 (356)
T ss_pred             HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            676778889999999999999999999999999999999999999988888        988898888777766655555


Q ss_pred             CCccc
Q 024637          247 FPFET  251 (265)
Q Consensus       247 ~~~~~  251 (265)
                      ..||+
T Consensus       177 ~~~e~  181 (356)
T TIGR00901       177 LAKEP  181 (356)
T ss_pred             hccCC
Confidence            55554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.53  E-value=1.1e-13  Score=113.97  Aligned_cols=154  Identities=16%  Similarity=0.179  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhc-hHHH-HHH
Q 024637           66 LLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIG-RKLS-MVL  143 (265)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-rr~~-~~~  143 (265)
                      ...+..+......+.+..+.|.+..+..          +.+..+.+.......++.+++.++.|++.||.. ||+. +..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~  289 (379)
T TIGR00881       220 YISLGYVFVYVVRTGILDWSPLYLTQEK----------GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAV  289 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHH
Confidence            3334444445555666677787775433          466677788888888999999999999999864 3332 222


Q ss_pred             HH-HHHHHHHHHHhh--cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHH
Q 024637          144 MF-VSACIFLLPLVF--HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGL  220 (265)
Q Consensus       144 ~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l  220 (265)
                      .. ....++......  ..+.+...+..++.|+...+..+....+..|.+|++.|+++.|+.+...++|+.++|.+.|.+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  369 (379)
T TIGR00881       290 FFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYL  369 (379)
T ss_pred             HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence            22 222222222222  233344445555566555555566778899999999999999999999999999999999999


Q ss_pred             HhhcchhHH
Q 024637          221 VTSCHLRLA  229 (265)
Q Consensus       221 ~~~~~~~~~  229 (265)
                      .+..|+...
T Consensus       370 ~~~~g~~~~  378 (379)
T TIGR00881       370 ADGFGWAGA  378 (379)
T ss_pred             HHhhccccc
Confidence            998887643

>PRK09669 putative symporter YagG; Provisional

Probab=99.53  E-value=5.7e-13  Score=112.45  Aligned_cols=116  Identities=14%  Similarity=0.047  Sum_probs=89.8

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHhhhhhhhhhhccc
Q 024637          111 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--HQSAVVTTLLLFGVRMCVTGTITVATIYAPE  188 (265)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e  188 (265)
                      ........+..+++.+++++++||+|+|+.+.++.++..+..+.+.+  .++.+..++..++.+++.+...+..+++++|
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444555777788899999999999999998887766554433332  3455666777778899999999999999999


Q ss_pred             ccC-------CCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcch
Q 024637          189 IYP-------TPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL  226 (265)
Q Consensus       189 ~~p-------~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~  226 (265)
                      ..+       .+..|..+|+.+.+.++|..+++.+.|.+.+..|+
T Consensus       347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            875       34456778888888899999999999999987665

>TIGR01272 gluP glucose/galactose transporter

Probab=99.53  E-value=1.7e-12  Score=104.18  Aligned_cols=160  Identities=14%  Similarity=0.108  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSM  141 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  141 (265)
                      +..++..+..+.....--+...|.+.|.++..        ..+.+..+.+...+....+.++|+++.+++.||+|+|+++
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~--------~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l  211 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPH--------ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL  211 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            33444445555555556677778888885321        1146778888888899999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHH
Q 024637          142 VLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLV  221 (265)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~  221 (265)
                      .++..+..++.++....++.. .....++.|++.+..+|...+...+.+|++ .+++.++. ..+.+|+++.|.+.|.+.
T Consensus       212 ~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~la  288 (310)
T TIGR01272       212 AFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLA  288 (310)
T ss_pred             HHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence            888877777765555444433 334555788999999999999999988865 45666664 567799999999999999


Q ss_pred             hhcchhHHHHH
Q 024637          222 TSCHLRLAVIL  232 (265)
Q Consensus       222 ~~~~~~~~~~~  232 (265)
                      |..|.+.++++
T Consensus       289 d~~g~~~a~~v  299 (310)
T TIGR01272       289 DCLGIQLAFAL  299 (310)
T ss_pred             HhccchHHHHH
Confidence            98887777653

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.52  E-value=8.9e-13  Score=109.99  Aligned_cols=140  Identities=9%  Similarity=-0.182  Sum_probs=100.1

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHHHHHhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-----HQSAVVTTLLLFGVRMCVTGT  178 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~  178 (265)
                      +.++.+.+.......++.+++.++.|+++||+++|+.+.++.++.+++.+.+..     ..+.++.++..++.+++.+..
T Consensus       247 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~  326 (406)
T PRK15402        247 QLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLA  326 (406)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHH
Confidence            355566666666666778899999999999999999988887777666655543     234455566667777777776


Q ss_pred             hhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 024637          179 ITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASS  244 (265)
Q Consensus       179 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~  244 (265)
                      .+......... +++.||+..++.+....+|..+|+.+.+++.+..++........+..++..++.
T Consensus       327 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  391 (406)
T PRK15402        327 NAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLV  391 (406)
T ss_pred             hhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHH
Confidence            66655555443 347899999999999999999999999999888776554444443333333333

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.52  E-value=1.5e-12  Score=107.80  Aligned_cols=156  Identities=10%  Similarity=0.084  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHH-H
Q 024637           69 VLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV-S  147 (265)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~-~  147 (265)
                      ..++.....+.....++|.+.++.           +.+..++++..+...+...++.++.|.++||+||+........ .
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~~-----------g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~   79 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKGI-----------GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALA   79 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            334444444445566777888554           4788999999999999999999999999999998544322221 1


Q ss_pred             HHHHHH-HHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcch
Q 024637          148 ACIFLL-PLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL  226 (265)
Q Consensus       148 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~  226 (265)
                      ..+..+ .....++.+.+++.+.+.+.+.+...+...++..+.  .++|+..+|.....+++|.+++|.+.+++.+..||
T Consensus        80 ~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~  157 (382)
T TIGR00902        80 SAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDE  157 (382)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence            111212 222467788888888878877777778877777653  46789999999999999999999999999999999


Q ss_pred             hHHHHHHHHHH
Q 024637          227 RLAVILFEVVF  237 (265)
Q Consensus       227 ~~~~~~~~~~~  237 (265)
                      +..+.......
T Consensus       158 ~~~f~~~~~~~  168 (382)
T TIGR00902       158 QNILAILTAGL  168 (382)
T ss_pred             hHHHHHHHHHH
Confidence            98887765543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.51  E-value=1.4e-12  Score=108.00  Aligned_cols=155  Identities=10%  Similarity=0.009  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchH----HHHHHHHHHHH
Q 024637           74 NVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRK----LSMVLMFVSAC  149 (265)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr----~~~~~~~~~~~  149 (265)
                      ....+.....++|.+.++.           +.+..++++..++..++..++.++.|+++||+||+    +.+.+...+. 
T Consensus        16 ~~~~~g~~~p~l~~~l~~~-----------g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~-   83 (382)
T PRK11128         16 YFFAYGVFLPFWSVWLKGQ-----------GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF-   83 (382)
T ss_pred             HHHHHHHHhhhHHHHHHhc-----------CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH-
Confidence            3344445556677777554           47889999999999999999999999999999984    2322222111 


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHH
Q 024637          150 IFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLA  229 (265)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~  229 (265)
                       ........++.+.+++.+++.+++.+...+...++..+.  .+.|+.+.+.....+++|.+++|.+++++.+..||+..
T Consensus        84 -~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~  160 (382)
T PRK11128         84 -AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAI  160 (382)
T ss_pred             -HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHH
Confidence             122222357788888888888888777778777776665  34578888999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHH
Q 024637          230 VILFEVVFVLAIAS  243 (265)
Q Consensus       230 ~~~~~~~~~i~~~~  243 (265)
                      ++..++...+..+.
T Consensus       161 f~~~~~~~~~~~~~  174 (382)
T PRK11128        161 LWILTAGVASMLLG  174 (382)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87766554444433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.50  E-value=8.8e-13  Score=109.66  Aligned_cols=142  Identities=17%  Similarity=0.113  Sum_probs=110.9

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 024637          111 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF---HQSAVVTTLLLFGVRMCVTGTITVATIYAP  187 (265)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  187 (265)
                      +...++..+++++|+++.++++||+|||..+.+..++..++.+++.+   .++...+++.+++.|+..+........++.
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~  142 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLT  142 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            34556667999999999999999999999999888888877776665   677888999999999999999999999999


Q ss_pred             cccCCCcchhhHHHHHhhhhHHHHHHHHHH-HHHHhh-cchhHHHHHHHHHHHHHHHHHhcCCccccc
Q 024637          188 EIYPTPARTTGFGVASSLGKVGGMVCPLVA-VGLVTS-CHLRLAVILFEVVFVLAIASSLLFPFETMG  253 (265)
Q Consensus       188 e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~-~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  253 (265)
                      |..|.+.||....+......+|..++..++ ..+... ..|...+....+..++..+...++ ||+.+
T Consensus       143 E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~-PESPk  209 (485)
T KOG0569|consen  143 EISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFL-PESPK  209 (485)
T ss_pred             hcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcC-CCCcc
Confidence            999999999999999999999988884443 444433 235544444444445555555554 57654

>TIGR00896 CynX cyanate transporter

Probab=99.50  E-value=1.5e-12  Score=106.78  Aligned_cols=145  Identities=12%  Similarity=0.064  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh-chHHHHHHHHHHH
Q 024637           70 LFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI-GRKLSMVLMFVSA  148 (265)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  148 (265)
                      ..+.....++....|.|.+.++.           +.+....+...+...++.++++++.|++.||+ +||+.+.++.++.
T Consensus       205 ~~~~~~~~~~~~~~~lp~~~~~~-----------g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~  273 (355)
T TIGR00896       205 FFGLQSGLYYSLIGWLPAILISH-----------GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQ  273 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Confidence            33444556667777888888553           36667788888888999999999999999999 5666767777777


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhccccc-CCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcch
Q 024637          149 CIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIY-PTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL  226 (265)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~  226 (265)
                      +++.+.+.+..+..... ...+.|++.+..++...+.+.+.. +++.++...++.+.+++++..++|.+.|++.+..|.
T Consensus       274 ~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       274 LVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             HHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            77666555544332222 345678888888877777666544 456789999999999999999999999999998764

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.49  E-value=1.2e-12  Score=111.22  Aligned_cols=119  Identities=12%  Similarity=0.073  Sum_probs=90.5

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHHHHHhhhhhhh
Q 024637          108 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-----HQSAVVTTLLLFGVRMCVTGTITVA  182 (265)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~  182 (265)
                      ...+....+..++.+++.++.++++||+|+|+.+.++.++..++.+.+..     ..+.+..++..++.+++.+..++..
T Consensus       266 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~  345 (473)
T PRK10429        266 DLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQ  345 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666788899999999999999999998887766655444322     3345556666677888888888999


Q ss_pred             hhhcccccC-------CCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcch
Q 024637          183 TIYAPEIYP-------TPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL  226 (265)
Q Consensus       183 ~~~~~e~~p-------~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~  226 (265)
                      +++++|..+       .+..|..+|....+..+|..+++.+.|++++..|+
T Consensus       346 ~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        346 VIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999955       33456677787888889999999999999886654

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.49  E-value=3.9e-13  Score=113.87  Aligned_cols=176  Identities=16%  Similarity=0.190  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhc--hHH
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIG--RKL  139 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--rr~  139 (265)
                      +.++...+........++....++|.+.++.           +.+..+.....++.++..++++++.|+++|+..  ++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~-----------g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~  366 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSL-----------GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALV  366 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence            4455555556667777888888999998654           477788899999999999999999999999987  556


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          140 SMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      +..++.++.+++.+.+.+.++++.++....++|++.+...+.....+.|+.+.+.-..+.|+...+..++..+||.+.|+
T Consensus       367 ~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~  446 (509)
T KOG2504|consen  367 LFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGL  446 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCccccee
Confidence            67778888888888888889999999999999999999988888999999999999999999999999999999999999


Q ss_pred             HHhhcc-hhHHHHHHHHHHHHHHHHHhcCC
Q 024637          220 LVTSCH-LRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       220 l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      +.|..+ +...+...++..+++..+.++..
T Consensus       447 ~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  447 LYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            999888 56666666666666665554443

>PRK10133 L-fucose transporter; Provisional

Probab=99.49  E-value=3.7e-12  Score=107.12  Aligned_cols=132  Identities=9%  Similarity=0.002  Sum_probs=103.5

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +.++...++......++.++++++.+++.||+|+|+++..+.++..+.+++..+.++. ..+....+.+++.+..+|..+
T Consensus       291 g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~  369 (438)
T PRK10133        291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIF  369 (438)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHH
Confidence            5788888999999999999999999999999999999888877776666555554443 234556778999999999999


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHH
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFV  238 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~  238 (265)
                      +...+.+|++ .+++.++.. ...+|+.++|.+.|.+.+..| .+..+++..+..+
T Consensus       370 s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~  423 (438)
T PRK10133        370 SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA  423 (438)
T ss_pred             HHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            9999998874 567777775 344788999999999999887 5566654444333

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.49  E-value=2.7e-12  Score=107.88  Aligned_cols=164  Identities=15%  Similarity=0.121  Sum_probs=122.5

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHH
Q 024637           48 GFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGA-VLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLI  126 (265)
Q Consensus        48 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (265)
                      .++.++++++++.++.++...++.........+. .++..+..              +.+ ...+....+..++.+++.+
T Consensus       214 ~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl--------------~~~-~~~~~~~~~~~~~~~v~~~  278 (428)
T PF13347_consen  214 LRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVL--------------GNE-GLISIFMLIFFVASIVGSP  278 (428)
T ss_pred             cccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh--------------cCc-hhhHHHHHHHHHHHHHHHH
Confidence            3455777776665555555444433222222222 22222222              222 4456666677888899999


Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHhhhhhhhhhhcccccC-------CCcchh
Q 024637          127 LSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH--QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYP-------TPARTT  197 (265)
Q Consensus       127 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p-------~~~r~~  197 (265)
                      ++++++||+|+|+++..+.++.+++.+.+.+.  ++.+..++..++.|++.+..+...+++.+|..+       .+..|.
T Consensus       279 ~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~  358 (428)
T PF13347_consen  279 LWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGM  358 (428)
T ss_pred             HHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHH
Confidence            99999999999999999999999998887775  488888999999999999999999999999987       345688


Q ss_pred             hHHHHHhhhhHHHHHHHHHHHHHHhhcch
Q 024637          198 GFGVASSLGKVGGMVCPLVAVGLVTSCHL  226 (265)
Q Consensus       198 ~~g~~~~~~~~g~~~~~~i~~~l~~~~~~  226 (265)
                      ..|+.+....++..+++.+.+.+.+..|+
T Consensus       359 ~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  359 YFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            88998999999999999999998876554

>PRK10054 putative transporter; Provisional

Probab=99.48  E-value=2.7e-12  Score=106.70  Aligned_cols=140  Identities=14%  Similarity=0.080  Sum_probs=106.6

Q ss_pred             CCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          105 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-QSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      .+....+.......+......+..|++.||.++|+.+.++..+.+++.+.+.+. ++.+..++...+.+++.+...+...
T Consensus       241 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~  320 (395)
T PRK10054        241 FAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEY  320 (395)
T ss_pred             hHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            333455556666666666777888999999999999988888777777666553 4555566677788888777778888


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSL  245 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  245 (265)
                      ..+.+..|++.|++.++..+ ...+|..+||.++|.+.|+.|....+.+.+....+..++..
T Consensus       321 ~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        321 MLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            89999999999999988654 66689999999999999999887777666555555544444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.47  E-value=6.3e-12  Score=104.78  Aligned_cols=141  Identities=13%  Similarity=0.098  Sum_probs=96.7

Q ss_pred             CCCCchHHHHHHHHH-hhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH---hhc-chhHHHHHHH----HHHHHH
Q 024637          104 KSKDNSLYVDVFIAS-LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL---VFH-QSAVVTTLLL----FGVRMC  174 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~----~~~g~~  174 (265)
                      +.+..+.++.....+ ++.+++.+++|++.||+|+|+.+.++.++..+..+.+   ... ++.+..++..    +..+++
T Consensus       241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  320 (402)
T PRK11902        241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMG  320 (402)
T ss_pred             CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            466667777665443 4678999999999999999998877776665554333   232 3444444433    244555


Q ss_pred             HhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          175 VTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       175 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      .+...+....++.+.+|.+.    .++.+....++..+++.++|.+.+..|+...|.+.+++.+++.++.+...
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~  390 (402)
T PRK11902        321 TAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMR  390 (402)
T ss_pred             HHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh
Confidence            66666777778888777554    45555566677776777899999999998888888777777766654444

>PRK09848 glucuronide transporter; Provisional

Probab=99.47  E-value=2.4e-12  Score=108.74  Aligned_cols=163  Identities=11%  Similarity=-0.007  Sum_probs=112.0

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAI  130 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  130 (265)
                      +++.+++++.....   .+..+.....++....+.|.+.++..          +.+.....+......++.+++.++.++
T Consensus       220 ~~~~l~~n~~f~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~l~~~  286 (448)
T PRK09848        220 SLQTLKRNRPLFML---CIGALCVLISTFAVSASSLFYVRYVL----------NDTGLFTVLVLVQNLVGTVASAPLVPG  286 (448)
T ss_pred             HHHHHhCCchHHHH---HHHHHHHHHHHHHHhhhheeeEeeec----------CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566655443332   23333333444444445666664433          333333333333335667788999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC-------CcchhhHHH
Q 024637          131 IVDKIGRKLSMVLMFVSACIFLLPLVFH--QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPT-------PARTTGFGV  201 (265)
Q Consensus       131 l~dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~  201 (265)
                      +.||+|+|+++.++.++.+++.+.+.+.  .+.+..++..++.+++.+...+...++.+|..|.       +.+|...|+
T Consensus       287 l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~  366 (448)
T PRK09848        287 MVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSL  366 (448)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHH
Confidence            9999999999999988888777666553  3455555666778888888888899999888764       346899999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhcch
Q 024637          202 ASSLGKVGGMVCPLVAVGLVTSCHL  226 (265)
Q Consensus       202 ~~~~~~~g~~~~~~i~~~l~~~~~~  226 (265)
                      .+....+|..+++.+.+.+++..|+
T Consensus       367 ~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        367 FSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999998876554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.46  E-value=3.1e-12  Score=106.49  Aligned_cols=152  Identities=9%  Similarity=0.042  Sum_probs=106.7

Q ss_pred             HHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHhhcc
Q 024637           81 AVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVD-KIGRKLSMVLMFVSACIFLLPLVFHQ  159 (265)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~~~~~~  159 (265)
                      ...+.|.+.++.+           .++.+.++...+..++...+....+++.| |++.++.+..+..+.+++.+++...+
T Consensus       227 ~~~~~p~~~~~~~-----------~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~  295 (400)
T PRK11646        227 VMLMLPIMVNDIA-----------GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS  295 (400)
T ss_pred             HHHhhhhhHHhhc-----------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Confidence            3456787775543           24456666666666655555555555555 56766667777777777776666666


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcc----hhHHHHHHHH
Q 024637          160 SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH----LRLAVILFEV  235 (265)
Q Consensus       160 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~----~~~~~~~~~~  235 (265)
                      +.+...+...+.+++.+...+...+++.+..|++.||+++|+.+....+|..+||.+.|++.+..+    ....+...+.
T Consensus       296 ~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~  375 (400)
T PRK11646        296 NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGI  375 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHH
Confidence            666665666667777777778888999999999999999999999999999999999999998753    2344444444


Q ss_pred             HHHHHHHH
Q 024637          236 VFVLAIAS  243 (265)
Q Consensus       236 ~~~i~~~~  243 (265)
                      +.++..+.
T Consensus       376 ~~~~~~~~  383 (400)
T PRK11646        376 IGLITLLA  383 (400)
T ss_pred             HHHHHHHH
Confidence            44444443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.46  E-value=5.1e-12  Score=104.60  Aligned_cols=143  Identities=11%  Similarity=0.055  Sum_probs=98.0

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAVVTTLLLFGVRMCVTGTITVA  182 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~  182 (265)
                      +.++...+.......++.+++.++.|++.||+|+|+.+.++..+.+++.+.+.. .++.+...+..++.+++..+..+..
T Consensus       231 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  310 (382)
T PRK10091        231 GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPL  310 (382)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH
Confidence            467778888888889999999999999999999999998888877777655443 4444444444455555544433333


Q ss_pred             h-hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          183 T-IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       183 ~-~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      . ....+..|.+.++.+  ..+....+|..+||.+.|++.+. .++...+...+++..+.......+.
T Consensus       311 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (382)
T PRK10091        311 QILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYG  376 (382)
T ss_pred             HHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence            3 344454555555544  34667789999999999999986 5676777766655555444444443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.46  E-value=1.2e-12  Score=107.25  Aligned_cols=146  Identities=15%  Similarity=0.130  Sum_probs=105.5

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHH-hhhhHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIAS-LAELPGLILSA  129 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g  129 (265)
                      +++++++++..+..+...+..+.....++....+.|.+.++.           +.+..+.+....+.+ ++.+++.+++|
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------g~~~~~~g~~~~~~~~~~~~~g~~~~g  266 (356)
T TIGR00901       198 PIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM-----------GFSKEEIALVAKINGLLGAILGGLIGG  266 (356)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            455555544333344444444445566667777778777542           466677666665544 56789999999


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHhhc-----------chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhh
Q 024637          130 IIVDKIGRKLSMVLMFVSACIFLLPLVFH-----------QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTG  198 (265)
Q Consensus       130 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~  198 (265)
                      ++.||+|||+.+.++.++.++...+..+.           ++.+......++.+++.+...+...++.+|.+|+++||+.
T Consensus       267 ~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~  346 (356)
T TIGR00901       267 IIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQ  346 (356)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHH
Confidence            99999999999888888777765544432           3445566667777888899999999999999999999999


Q ss_pred             HHHHHhhhh
Q 024637          199 FGVASSLGK  207 (265)
Q Consensus       199 ~g~~~~~~~  207 (265)
                      +|+.++..+
T Consensus       347 ~g~~~~~~~  355 (356)
T TIGR00901       347 MALLSSLSA  355 (356)
T ss_pred             HHHHHHHHh
Confidence            999887654

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.46  E-value=9.2e-13  Score=111.61  Aligned_cols=175  Identities=16%  Similarity=0.039  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH
Q 024637           63 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV  142 (265)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  142 (265)
                      ..+..++.........+.+..+.+.+.++.           +.+..++.+..++......+.+++.+.+.||+|.|.+.+
T Consensus        47 V~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f-----------~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i  115 (509)
T KOG2504|consen   47 VVFASFLVNLSTDGLINSFGLLFEELMDYF-----------GSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMI  115 (509)
T ss_pred             eeHhHHHHHHhhhcchheehhhHHHHHHHh-----------CCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHH
Confidence            333444444444445555556666666443           356666889999888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHH
Q 024637          143 LMFVSACIFLLPLVFHQSAVVTTLL-LFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLV  221 (265)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~  221 (265)
                      .+.++..+++++..++++.|.+++. .++.|+|.+..+.+....+...|++ +|+.+.|+......+|.++-|.+.-++.
T Consensus       116 ~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-kR~lA~Gia~~GsG~G~~~~~~l~~~l~  194 (509)
T KOG2504|consen  116 AGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-KRALATGIAVSGTGVGTVVFPPLLKYLL  194 (509)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-HHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence            9999999999999999888765554 6778899999988888888877765 5999999999999999999999999999


Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHhcCCc
Q 024637          222 TSCHLRLAVILFEVVFVLAIASSLLFPF  249 (265)
Q Consensus       222 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~  249 (265)
                      +.+||++.+++.+.+.+-..+....+.|
T Consensus       195 ~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  195 SKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999998777777777765

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.44  E-value=1.4e-11  Score=98.51  Aligned_cols=175  Identities=17%  Similarity=0.121  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSM  141 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  141 (265)
                      ..+..+..+++...+..-......|++.+..           +.+..++++.......+..++++..|++.+|+|+|+-+
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f-----------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi   81 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVF-----------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGI   81 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHh-----------CccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHH
Confidence            3444444555555555555566677665332           58889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHH
Q 024637          142 VLMFVSACIFLLPLVF---HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAV  218 (265)
Q Consensus       142 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~  218 (265)
                      +.++.+++++++++.-   ..++..+++..++.+.|.+...+...+++..+.|++....-+.+.+.+..+|++++|.+++
T Consensus        82 ~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~  161 (422)
T COG0738          82 VLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGS  161 (422)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            9999999999988763   5667778888899999999999999999999999988888999999999999999999999


Q ss_pred             HHHhh-------------------cchhHHHHHHHHHHHHHHHHHhcC
Q 024637          219 GLVTS-------------------CHLRLAVILFEVVFVLAIASSLLF  247 (265)
Q Consensus       219 ~l~~~-------------------~~~~~~~~~~~~~~~i~~~~~~~~  247 (265)
                      ++..+                   ..++.++...+...++.++.....
T Consensus       162 ~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~  209 (422)
T COG0738         162 SLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLS  209 (422)
T ss_pred             HHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence            98873                   124556666666665555544443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.44  E-value=3.7e-12  Score=107.25  Aligned_cols=168  Identities=11%  Similarity=0.050  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhh----hchHH-HHHHHHHHHH
Q 024637           75 VFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDK----IGRKL-SMVLMFVSAC  149 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~-~~~~~~~~~~  149 (265)
                      ...+.....|++.+..+..          +.++..++...++..+...+..++.|+++||    +|||| .++++....+
T Consensus        12 ~~~~~~~~~~l~~~~~~~~----------g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~   81 (437)
T TIGR00792        12 NFIFAIVSTYLLFFYTDVL----------GLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFS   81 (437)
T ss_pred             HHHHHHHHHHHHHHHHHcc----------CCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHH
Confidence            3444444555555554433          5788899999999999999999999999998    67755 5667777777


Q ss_pred             HHHHHHhhcch------hHHHHHHHHHHHHHHhhhhhhhhhhccccc-CCCcchhhHHHHHhhhhHHHHHHHHHHHHHHh
Q 024637          150 IFLLPLVFHQS------AVVTTLLLFGVRMCVTGTITVATIYAPEIY-PTPARTTGFGVASSLGKVGGMVCPLVAVGLVT  222 (265)
Q Consensus       150 ~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~  222 (265)
                      ++.+++.+.++      .++.++..++.+.+.+....+..++.+|+. ++++|+...++.+....+|+.+++.+.+.+..
T Consensus        82 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~  161 (437)
T TIGR00792        82 IVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVS  161 (437)
T ss_pred             HHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766665432      234444555666666666677788889987 46789999999888888888887777666653


Q ss_pred             -------hcchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          223 -------SCHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       223 -------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                             ..+|+..+.+.+++.++..++.++..+|++
T Consensus       162 ~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       162 YFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence                   346777788888777777766666665654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11462 putative transporter; Provisional

Probab=99.44  E-value=1e-11  Score=105.09  Aligned_cols=162  Identities=12%  Similarity=0.068  Sum_probs=101.7

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAI  130 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  130 (265)
                      .++.+++++.++.++...++.........+...|...|.              ..+............++.+++.+++++
T Consensus       220 ~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~--------------~g~~~~~~~~l~~~~i~~iig~~l~~~  285 (460)
T PRK11462        220 DLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI--------------LGTPEVFVAFLTTYCVGNLIGSALAKP  285 (460)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh--------------cCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666555444444444444455555555554              122223344566667888899999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHhhhhhhhhhhcccccC-----CCcchhh--HHH
Q 024637          131 IVDKIGRKLSMVLMFVSACIFLLPLVFH--QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYP-----TPARTTG--FGV  201 (265)
Q Consensus       131 l~dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p-----~~~r~~~--~g~  201 (265)
                      ++||+|+|+++..+..+..+..+++.+.  .+.+..++..++.+++.+...+..+++.+|..+     +..|..+  ++.
T Consensus       286 l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~  365 (460)
T PRK11462        286 LTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAG  365 (460)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHH
Confidence            9999999998775555444433333332  223334444556677776666777788887765     3345444  455


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhcch
Q 024637          202 ASSLGKVGGMVCPLVAVGLVTSCHL  226 (265)
Q Consensus       202 ~~~~~~~g~~~~~~i~~~l~~~~~~  226 (265)
                      ......+|..+++.+.|++++..|+
T Consensus       366 ~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        366 TLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5577789999999999998876544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.44  E-value=2.4e-11  Score=100.97  Aligned_cols=138  Identities=10%  Similarity=0.030  Sum_probs=101.1

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +.+....+......+++.+++.++.+++.||.+++.......+..+...++....++.+...+..++.|++.+...+...
T Consensus       248 g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  327 (394)
T PRK10213        248 GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWS  327 (394)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHH
Confidence            36667778888888899999999999999996544434333333333344444455666667777888888888888888


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIA  242 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~  242 (265)
                      +++.+..|+ .++...++.....++|..+||.++|++.+..|....+...+++.++..+
T Consensus       328 ~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        328 TWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             HHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence            788888874 4667777777888899999999999999998887777666555544443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.43  E-value=8e-12  Score=103.13  Aligned_cols=162  Identities=15%  Similarity=0.157  Sum_probs=117.6

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHH
Q 024637           52 FFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAII  131 (265)
Q Consensus        52 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  131 (265)
                      +..+++++.++..++..++.++......+...|.-.|.   -          +.+.............+.+++.++..++
T Consensus       229 ~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~---l----------g~~~l~~~~~~~~~~~~~l~~~~~~p~L  295 (467)
T COG2211         229 FLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV---L----------GDPELFAYLLLLASGAGLLIGLILWPRL  295 (467)
T ss_pred             HHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE---c----------CChHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            34556665555555544444433333333333322222   1          3444555566666667777779999999


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhhhhhhhhhhcccccC-------CCcchhhHHHH
Q 024637          132 VDKIGRKLSMVLMFVSACIFLLPLVFHQ--SAVVTTLLLFGVRMCVTGTITVATIYAPEIYP-------TPARTTGFGVA  202 (265)
Q Consensus       132 ~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~  202 (265)
                      ++|+|+|+++.++.++..++.+++.+.+  +.+..++..++.+++.+...+..+++++|..+       .+.-|...|..
T Consensus       296 ~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~  375 (467)
T COG2211         296 VKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGM  375 (467)
T ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHH
Confidence            9999999999999999999998888844  56677777788999999999999999999864       34557777887


Q ss_pred             HhhhhHHHHHHHHHHHHHHhhcch
Q 024637          203 SSLGKVGGMVCPLVAVGLVTSCHL  226 (265)
Q Consensus       203 ~~~~~~g~~~~~~i~~~l~~~~~~  226 (265)
                      .++..+|.+++..+.|++++..|+
T Consensus       376 tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         376 TFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            888889999999999999887653

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.43  E-value=5.7e-12  Score=96.12  Aligned_cols=153  Identities=12%  Similarity=-0.016  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHH
Q 024637           61 IRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLS  140 (265)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  140 (265)
                      .+.+++..++.+....+.+-+...-|.+.++..          +.++...+...+.....+.+.+++.|.++||+|++..
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rf----------GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~  332 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRF----------GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW  332 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhh----------CCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh
Confidence            344555555545445555555555666665554          5777777777777777788999999999999999987


Q ss_pred             HHHHHHHHH-HHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          141 MVLMFVSAC-IFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       141 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      .+.+..+.. ++...+.++  .+.-++...+.|+.........|..++.+.|.++-|+++|++++..++|-.+.|++.|.
T Consensus       333 wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~  410 (459)
T KOG4686|consen  333 WVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGF  410 (459)
T ss_pred             hHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhe
Confidence            766554443 344444332  12223445556667666667789999999999999999999999999999999999999


Q ss_pred             HHhhcc
Q 024637          220 LVTSCH  225 (265)
Q Consensus       220 l~~~~~  225 (265)
                      +.+.-|
T Consensus       411 i~d~~g  416 (459)
T KOG4686|consen  411 IADGDG  416 (459)
T ss_pred             eecCCC
Confidence            998766

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.43  E-value=2.6e-12  Score=107.67  Aligned_cols=187  Identities=14%  Similarity=0.200  Sum_probs=134.8

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHH
Q 024637           48 GFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLIL  127 (265)
Q Consensus        48 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (265)
                      ...++++++++   +.++..++..++....++.+..|.|.|+++..          +.+..+.++...+..+...+..++
T Consensus       247 ~~vP~~~i~ts---~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL----------~f~v~~~G~~salP~l~~~~~k~~  313 (466)
T KOG2532|consen  247 PPVPYKAILTS---PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL----------GFDVRETGFLSALPFLAMAIVKFV  313 (466)
T ss_pred             CCCCHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh----------CCChhhhhHHHHHHHHHHHHHHHH
Confidence            45688888865   56777888888889999999999999997766          678888899999999999999999


Q ss_pred             HHHHHhhhch---------HHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcch
Q 024637          128 SAIIVDKIGR---------KLSMVLMFVSACIFLLPLVFHQS--AVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPART  196 (265)
Q Consensus       128 ~g~l~dr~gr---------r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~  196 (265)
                      +|.++||.-+         |-.-.++....+++++.+.+.++  .+..+++.. ...+..+..............++.-+
T Consensus       314 ~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~-~~~~~~g~~~~Gf~~~~~~~apq~a~  392 (466)
T KOG2532|consen  314 AGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLT-IAIGLSGFNISGFYKNHQDIAPQHAG  392 (466)
T ss_pred             HHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHH-HHHHHcccchhhhHhhhhhccchHHH
Confidence            9999998744         22334566666666666666442  222222222 22233333222222222221455689


Q ss_pred             hhHHHHHhhhhHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          197 TGFGVASSLGKVGGMVCPLVAVGLVT---SCHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       197 ~~~g~~~~~~~~g~~~~~~i~~~l~~---~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      ..+|+.+....+.++++|.+.+.+..   ...|+..|++.+++.+++.++..++-
T Consensus       393 ~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  393 FVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence            99999999999999999999999984   33688899998888888876666553

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.43  E-value=1.2e-11  Score=102.75  Aligned_cols=142  Identities=10%  Similarity=-0.025  Sum_probs=106.7

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +.++.+.+.......++.++++++.+++.||.++|+++..+.+ .++..+.+.+.++.+...+..++.|++.+...+...
T Consensus       237 g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~  315 (393)
T PRK11195        237 GITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMN  315 (393)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHH
Confidence            5777788899999999999999999999999998888777753 344444444455556566666678888777777778


Q ss_pred             hhcccccCCCc-chhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcC
Q 024637          184 IYAPEIYPTPA-RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  247 (265)
Q Consensus       184 ~~~~e~~p~~~-r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  247 (265)
                      +.+.+..|++. +|++.++.+...+++..++..+.+.+ +..|....+.+.++..++.+.+.+.+
T Consensus       316 ~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        316 ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88888766655 79999999999999999999998855 66677766666555555555444433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.43  E-value=3.3e-12  Score=107.40  Aligned_cols=149  Identities=15%  Similarity=0.089  Sum_probs=130.6

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +....+.+...+++.++.+++.++++.+.||++-.+.+....++.++..++.....+.+.+++.+++.|++-+..+|...
T Consensus        77 ~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~  156 (495)
T KOG2533|consen   77 KLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVV  156 (495)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHH
Confidence            35557778889999999999999999999999977777777777777666666688899999999999999999999999


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHH------hhcchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLV------TSCHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      .++..++.+++|+..+|+.+....+|+++|+++...+.      ...||++.|++-+++.++..++++++.|+..
T Consensus       157 ~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P  231 (495)
T KOG2533|consen  157 AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP  231 (495)
T ss_pred             HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence            99999999999999999999999999999999998863      3568999999999999988888887776543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.43  E-value=8e-12  Score=106.64  Aligned_cols=147  Identities=13%  Similarity=0.075  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHH
Q 024637           68 WVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVS  147 (265)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~  147 (265)
                      .+..+.....+++...+.|.+.++..          +.+..+.++......++.+++.++.|++.||+|||+++.++..+
T Consensus       261 ~~~~~~~~~~~~~~~~~~p~~~~~~~----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~  330 (485)
T TIGR00711       261 CVYMSLLGLGLYGSFYLLPLYLQQVL----------GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLIL  330 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence            34444455566666777888875543          56777888888888899999999999999999999999988888


Q ss_pred             HHHHHHHHhh----cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh
Q 024637          148 ACIFLLPLVF----HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS  223 (265)
Q Consensus       148 ~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~  223 (265)
                      .+++.+.+.+    ..+.+......++.|++.+...+.......+.+|++.|+++.|+.+...++|+.+|+.+.+.+.++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       331 YAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887776652    233455556677788888887777777778889999999999999999999999999999998875


Q ss_pred             c
Q 024637          224 C  224 (265)
Q Consensus       224 ~  224 (265)
                      .
T Consensus       411 ~  411 (485)
T TIGR00711       411 R  411 (485)
T ss_pred             H
Confidence            3

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.42  E-value=9.5e-12  Score=116.68  Aligned_cols=135  Identities=11%  Similarity=-0.017  Sum_probs=107.8

Q ss_pred             CCCCc-hHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhh
Q 024637          104 KSKDN-SLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVA  182 (265)
Q Consensus       104 ~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  182 (265)
                      +.+.. ..++......++.+++.++.|+++||+++++++.++.++.+++.+++.+..+.+..++..++.|++.+...+..
T Consensus       264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  343 (1146)
T PRK08633        264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPL  343 (1146)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            45556 77888888889999999999999999999998888888888887777777777777777888888888888889


Q ss_pred             hhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Q 024637          183 TIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFV  238 (265)
Q Consensus       183 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~  238 (265)
                      .+++.+..|++.||+++|+.+.+.++|.++++.+++.+... .++...+++.+.+.+
T Consensus       344 ~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        344 NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL  400 (1146)
T ss_pred             HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888877766442 233334444444333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.42  E-value=2.6e-12  Score=104.87  Aligned_cols=132  Identities=19%  Similarity=0.277  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCC-CchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 024637           73 ANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSK-DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIF  151 (265)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~  151 (265)
                      .....++....+.|.+..+..          +.+ ..+.+....+..+...++.++.|++.||+++|+...+......+.
T Consensus       217 ~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  286 (352)
T PF07690_consen  217 LFFFVFSGFSFFLPLYLQEVL----------GFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILG  286 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHH----------HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccchhhhhcc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            334455567777887743322          355 466777788888888999999999999999888777777766666


Q ss_pred             HHHHhh---cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHH
Q 024637          152 LLPLVF---HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCP  214 (265)
Q Consensus       152 ~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~  214 (265)
                      .+.+..   ..+..+.++..++.|++.+...+....++.|.+|++.||++.|+.+...++|+.++|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  287 ALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            665554   334566666777888888888999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.42  E-value=1.5e-11  Score=102.15  Aligned_cols=126  Identities=13%  Similarity=0.028  Sum_probs=83.5

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +.+....+.......++.+++.++.+++.||+|||+.+.++..+..++.+.+....+.+..+....+.+.+.+...+.. 
T Consensus       235 g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-  313 (392)
T PRK10473        235 GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVA-  313 (392)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-
Confidence            4566667777788888899999999999999999999998888888777766665444433333344444443333332 


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFE  234 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~  234 (265)
                       ...++.|.+.|+   |.......++..+++.+.+++.+..|+.......+
T Consensus       314 -~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~  360 (392)
T PRK10473        314 -MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIG  360 (392)
T ss_pred             -HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence             334445555443   44445556777788888888888777654333333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.42  E-value=1.3e-11  Score=102.07  Aligned_cols=137  Identities=13%  Similarity=0.045  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 024637           75 VFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP  154 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  154 (265)
                      ...++....+.|.+.++..          +.++.+.+.......++.+++.++.|++.||+|+|+.+..+.++..++.+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~----------g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  288 (385)
T TIGR00710       219 FGGFFAFFSGAPFVYIDIM----------GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVL  288 (385)
T ss_pred             HHHHHHHHHcChHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            3344455555666654322          466677788888888999999999999999999999988887777666555


Q ss_pred             Hhhc-----chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHh
Q 024637          155 LVFH-----QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVT  222 (265)
Q Consensus       155 ~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~  222 (265)
                      +...     .+....+...++.+++.+...+.......|..| +.|+++.++.+.....++.+.+.+.+.+.+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~  360 (385)
T TIGR00710       289 LEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG  360 (385)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4431     223344445666778888888888888889887 569999999988877544444444554433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.40  E-value=1.2e-11  Score=105.84  Aligned_cols=147  Identities=10%  Similarity=-0.009  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHH
Q 024637           66 LLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMF  145 (265)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~  145 (265)
                      ...+..+.....+++...+.|.+.+...          +.++.+.+.......++..+++++.|++.||+|+|+.+..+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~lq~v~----------g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~  332 (495)
T PRK14995        263 SGVVMAMTAMITLVGFELLMAQELQFVH----------GLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGM  332 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            3334444445556667777888876544          577788899998889999999999999999999999988888


Q ss_pred             HHHHHHHHHHhh---cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHh
Q 024637          146 VSACIFLLPLVF---HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVT  222 (265)
Q Consensus       146 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~  222 (265)
                      ++.+++.+.+..   ..+.+......++.|++.+...+.....+.+..|++.++.+.++.+...++|+.+|+.+.+.+.+
T Consensus       333 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        333 ALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877776655443   23455556677888999888888888888899999999999999999999999999999998865

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.39  E-value=3.8e-15  Score=125.90  Aligned_cols=144  Identities=16%  Similarity=0.166  Sum_probs=118.1

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHhhhhhhhhh
Q 024637          108 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ---SAVVTTLLLFGVRMCVTGTITVATI  184 (265)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~  184 (265)
                      ....+..+...++..+|+++.|+++||+|||+.+.++.++..++.++..+++   +.+.+.+.+++.|++.|+..+....
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3467778888899999999999999999999999999999999999999988   8899999999999999999999999


Q ss_pred             hcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          185 YAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC---HLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       185 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      ++.|..|++.|+...++.+....+|..++..+...+....   +|+..+....+..++..+.. ++.||+.
T Consensus       126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP  195 (451)
T PF00083_consen  126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESP  195 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            9999999999999999999888888888777765443322   36656555555554444433 4456764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.38  E-value=3.4e-11  Score=99.42  Aligned_cols=114  Identities=14%  Similarity=0.096  Sum_probs=78.5

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHHHHHHhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----HQSAVVTTLLLFGVRMCVTGTI  179 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~  179 (265)
                      +.+..+.+.......++.+++.++.|++.||+|||+.+..+.++..+..+....    ..+.+...+...+.+.+.+...
T Consensus       226 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (377)
T PRK11102        226 GVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMIS  305 (377)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence            466677888888888999999999999999999999988877665443332221    2233433344444444444555


Q ss_pred             hhhhhhcccccCCCcchhhHHHHHhhhh-HHHHHHHHHHH
Q 024637          180 TVATIYAPEIYPTPARTTGFGVASSLGK-VGGMVCPLVAV  218 (265)
Q Consensus       180 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~g~~~~~~i~~  218 (265)
                      +.....+.|..| +.|+++.++.+.... +|..+++.+.+
T Consensus       306 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        306 SNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            556667778777 679999998876654 67777776654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.38  E-value=5.4e-11  Score=99.27  Aligned_cols=138  Identities=8%  Similarity=-0.042  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 024637           75 VFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP  154 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  154 (265)
                      .....+...+++.|.++.+.         +.+.............+..+|+++++++.||+++|+++.+..++..++.++
T Consensus       245 vg~e~~~~s~l~~y~~~~~~---------~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll  315 (410)
T TIGR00885       245 VGVQIMCWTFIIQYAVRLIP---------GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLG  315 (410)
T ss_pred             HHHHHHHHHHHHHHHhhccC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            33344455667777643320         122222233444445677899999999999999999998888888888877


Q ss_pred             HhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 024637          155 LVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC  224 (265)
Q Consensus       155 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~  224 (265)
                      ....++.. ......+.+++.+..+|..++...+..+++.+..+.++....  +|+.+.|.+.|++.|..
T Consensus       316 ~~~~~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       316 SIFAGGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             HHHcCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence            77765543 355666777888899999999999999988765555555544  99999999999999954

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11043 putative transporter; Provisional

Probab=99.38  E-value=8.1e-11  Score=98.09  Aligned_cols=139  Identities=12%  Similarity=0.094  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 024637           76 FSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL  155 (265)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  155 (265)
                      ..++....+.|.+.++.           +.+..+.++......++..+++++.+++.||+|+|+......+..+++.+.+
T Consensus       217 ~~~~~~~~~~p~~~~~~-----------g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~  285 (401)
T PRK11043        217 AAFFAWLTGSPFILEQM-----------GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAI  285 (401)
T ss_pred             HHHHHHHHHhHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            33444555677776443           3666677776677777888999999999999999987655544444433222


Q ss_pred             ---hh--cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcch
Q 024637          156 ---VF--HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL  226 (265)
Q Consensus       156 ---~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~  226 (265)
                         ..  .++.+..++...+.+++.+..++.......+..|. .|+++.|+.+.....++..++.+.+.+.+....
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~  360 (401)
T PRK11043        286 WLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFLASLLVSALISTPLL  360 (401)
T ss_pred             HHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHHHHHHHHHccCCChh
Confidence               11  23444444555667777788888887777777764 699999999999888888999999988765433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.37  E-value=4.2e-11  Score=95.79  Aligned_cols=175  Identities=13%  Similarity=0.115  Sum_probs=132.3

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAI  130 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  130 (265)
                      ...+++++++.+...+..+++.+.-.   ....|++.|..+..          +.+..+.....+.+..+.++|++++.+
T Consensus       228 ~~~~l~~~~~~~~gvl~~FlYVG~Ev---a~gsfl~~y~~~~~----------g~~~~~aa~~~s~~~~~~~vGRFig~~  294 (422)
T COG0738         228 GLSSLFQNKHLRLGVLAIFLYVGAEV---AIGSFLVSYLEELL----------GLNEQQAAYYLSFFWVGFMVGRFIGSA  294 (422)
T ss_pred             hHHHHHhChHHHHHHHHHHHHHhHHH---HHHHHHHHHHHhcC----------CccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677777666666665555554433   45556777775533          577788888999999999999999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHH
Q 024637          131 IVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGG  210 (265)
Q Consensus       131 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~  210 (265)
                      +..|+...|.+....++..+.++...+.++.+ .+...++.|++.+..+|..++...+..|.+  .+..|..-...-+|+
T Consensus       295 lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v-~~~~l~~ig~F~simfPTIfslal~~l~~~--ts~~s~~l~maivGG  371 (422)
T COG0738         295 LMSRIKPEKYLAFYALIAILLLLAVALIGGVV-ALYALFLIGLFNSIMFPTIFSLALKNLGEH--TSVGSGLLVMAIVGG  371 (422)
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHhHHHHHHHHHHHHhccCcc--ccccceeeeeheecc
Confidence            99999999999988888888887777777744 455566788999999999999999999933  333444445556899


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 024637          211 MVCPLVAVGLVTSCHLRLAVILFEVVFVLAI  241 (265)
Q Consensus       211 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~  241 (265)
                      ++.|.+.|++.|..|....+.....+|.+..
T Consensus       372 AiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         372 AIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999988777765555555444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.37  E-value=2.2e-11  Score=114.06  Aligned_cols=154  Identities=11%  Similarity=0.011  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 024637           75 VFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP  154 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  154 (265)
                      .+..+.+..+.|.|.++..          +.+....++..+...++.++|.++.|+++|+.++++.+..+.++.+++.+.
T Consensus       238 ~~~~~~~~~~~p~~~~~~~----------g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  307 (1140)
T PRK06814        238 WLVGAVVLSQLPLLAKETL----------GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLD  307 (1140)
T ss_pred             HHHHHHHHHHhHHHHHHHc----------CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHH
Confidence            3444455566777775443          466778888889999999999999999999887766655555555444433


Q ss_pred             Hhhc--------------------chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHH
Q 024637          155 LVFH--------------------QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCP  214 (265)
Q Consensus       155 ~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~  214 (265)
                      +.+.                    .+.+.+++..++.|++.+...+...+++.+.+|++.||+++|+.+++..+|..+++
T Consensus       308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~  387 (1140)
T PRK06814        308 LAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGT  387 (1140)
T ss_pred             HHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHH
Confidence            3221                    55666677778888888888888999999999999999999999999999999999


Q ss_pred             HHHHHHHhh-cchhHHHHHHHHHHH
Q 024637          215 LVAVGLVTS-CHLRLAVILFEVVFV  238 (265)
Q Consensus       215 ~i~~~l~~~-~~~~~~~~~~~~~~~  238 (265)
                      .+.+.+.+. .+....+++.+++.+
T Consensus       388 ~~~g~l~~~~~~~~~~~~~~~~~~~  412 (1140)
T PRK06814        388 IILALLQALGFSIPWIILFIALANL  412 (1140)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHH
Confidence            999988743 344444444444333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.35  E-value=8e-11  Score=92.94  Aligned_cols=182  Identities=12%  Similarity=0.082  Sum_probs=133.8

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHH
Q 024637           52 FFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAII  131 (265)
Q Consensus        52 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  131 (265)
                      -..+++++   ..+...+..-.++..+|....|+|.+..+.+           .+..+.+...++..+..++.++....+
T Consensus       201 ~~~vw~~~---~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G-----------~sa~~aG~llsl~~l~~~~~~ll~P~l  266 (395)
T COG2807         201 VRKVWRSP---LAWQVTLFMGLQSLLYYIVIGWLPAILIDRG-----------LSAAEAGSLLSLMQLAQLPTALLIPLL  266 (395)
T ss_pred             ccccccCc---hhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-----------CCHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            34455443   2333344444578889999999999997775           888999999999999999999999999


Q ss_pred             Hhhh-chHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC-CcchhhHHHHHhhhhHH
Q 024637          132 VDKI-GRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPT-PARTTGFGVASSLGKVG  209 (265)
Q Consensus       132 ~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~~g  209 (265)
                      .+|. .+|+..+...+++.++...+.+.+......- .++.|++.|+.++.....+....+. +.-+.-.|+.+.++.+-
T Consensus       267 a~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYll  345 (395)
T COG2807         267 ARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLL  345 (395)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHH
Confidence            9975 5777777777777777777666433222222 5788999999999999988877654 45677788889999999


Q ss_pred             HHHHHHHHHHHHhhcchhHH-HHHHHHHHHHHHHHHhcCC
Q 024637          210 GMVCPLVAVGLVTSCHLRLA-VILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       210 ~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~i~~~~~~~~~  248 (265)
                      +.+||.+.|++.|..|.+.. ...+....++..+..+..-
T Consensus       346 Aa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~  385 (395)
T COG2807         346 AAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAG  385 (395)
T ss_pred             HhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999998875544 3344444444444444443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.34  E-value=2.8e-11  Score=95.63  Aligned_cols=147  Identities=16%  Similarity=0.130  Sum_probs=125.4

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +.+..+..++......+..+++..+|.++|++|||+.+.++.+..++..++...++++.++.++..+.+++.|+ .|...
T Consensus       109 ~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~  187 (528)
T KOG0253|consen  109 GPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDS  187 (528)
T ss_pred             chhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhH
Confidence            35556667777777889999999999999999999999999999999999999999999999999999999999 79999


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccc
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  253 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  253 (265)
                      ++-.|..|...|+.-+=+. .+..+|.++...+.-.++.++||++-++.......+.+.+..+.+ |+.+
T Consensus       188 ~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~-ESpR  255 (528)
T KOG0253|consen  188 AIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVY-ESPR  255 (528)
T ss_pred             HHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcc-cCcc
Confidence            9999999999999877666 777799999998888888899998888777766666666666654 6654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.33  E-value=1.9e-10  Score=95.54  Aligned_cols=176  Identities=16%  Similarity=0.032  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHH--HHHHhhhhHHHHHH-HHHHhhhchHHH
Q 024637           64 TLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDV--FIASLAELPGLILS-AIIVDKIGRKLS  140 (265)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-g~l~dr~grr~~  140 (265)
                      .......++.+...+.....++|.+.++.+           .+..+++...  .+..+..++.+++. ++..||+|||+.
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g-----------~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~   71 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDG-----------APLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRS   71 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchh
Confidence            344555677777777777888999997664           7778888763  44566776777777 447889999988


Q ss_pred             HHHHHHHH-HHHHHHHh-h--cch-hHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHH
Q 024637          141 MVLMFVSA-CIFLLPLV-F--HQS-AVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPL  215 (265)
Q Consensus       141 ~~~~~~~~-~~~~~~~~-~--~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~  215 (265)
                      .++...+. ..+...+. +  ..+ ..+.+...++..++.....+....+..|..+++.++...+.......+|..+++.
T Consensus        72 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~  151 (390)
T TIGR02718        72 WVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGA  151 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            65554332 22222222 1  222 2233333444445555566777778888888888888877777777899999999


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          216 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       216 i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      ..+++.+..||+..|++.+++.++..+..++..++
T Consensus       152 ~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       152 GTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999888877766666555544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.32  E-value=7.6e-11  Score=90.37  Aligned_cols=151  Identities=13%  Similarity=0.075  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 024637           74 NVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL  153 (265)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~  153 (265)
                      .....|.+..|.|.+-++.           +.+..+...+.+...++..+ +++.|.+.|++|.+.++.++.+...++..
T Consensus        14 ~~Gt~Y~Fs~yS~~Lk~~l-----------~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~   81 (250)
T PF06813_consen   14 CSGTTYTFSAYSPQLKSRL-----------GYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYG   81 (250)
T ss_pred             hcCcccchhhhhHHHHHHh-----------CCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            4446788888988887544           47778888888888888876 48899999999999999999999999988


Q ss_pred             HHhh-------cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcch
Q 024637          154 PLVF-------HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL  226 (265)
Q Consensus       154 ~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~  226 (265)
                      .+..       ..+.|.+.+..++.+.+.+...+.......+.||. +||++.|+.-....+++.+-..+...+.+. +.
T Consensus        82 ~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~  159 (250)
T PF06813_consen   82 LLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DP  159 (250)
T ss_pred             HHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC-Ch
Confidence            7765       13455555555555555555555666666688985 699999999999999888888777766654 22


Q ss_pred             hHHHHHHHHHHH
Q 024637          227 RLAVILFEVVFV  238 (265)
Q Consensus       227 ~~~~~~~~~~~~  238 (265)
                      ...+++.+....
T Consensus       160 ~~fll~la~~~~  171 (250)
T PF06813_consen  160 SSFLLFLAVLPA  171 (250)
T ss_pred             HHHHHHHHHHHH
Confidence            233333444433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.30  E-value=1.7e-10  Score=96.92  Aligned_cols=202  Identities=11%  Similarity=0.001  Sum_probs=136.0

Q ss_pred             cccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHH
Q 024637           52 FFMLFS--RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSG-DSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILS  128 (265)
Q Consensus        52 ~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (265)
                      ++++++  ++..+.+..++..++...++++.+..|...+..+ ..+-++...+..........+...+.++...+.+++.
T Consensus       246 ~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l  325 (477)
T TIGR01301       246 FGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGM  325 (477)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444443  2334556666777777777777777776666532 2211111000000000012344455556666777888


Q ss_pred             HHHHhhhch-HHHHHHHHHHHHHHHHHHhhcch---------------------hHHHHHHHHHHHHHHhhhhhhhhhhc
Q 024637          129 AIIVDKIGR-KLSMVLMFVSACIFLLPLVFHQS---------------------AVVTTLLLFGVRMCVTGTITVATIYA  186 (265)
Q Consensus       129 g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~g~~~~~~~~~~~~~~  186 (265)
                      .++.+|+|+ |++..++.++.+++++...+..+                     .+..++...+.|+..+..+++.++++
T Consensus       326 ~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~  405 (477)
T TIGR01301       326 EKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALA  405 (477)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence            899999985 67778888888877777664221                     26667777888999999999999999


Q ss_pred             ccccCC--CcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHhcCCccccc
Q 024637          187 PEIYPT--PARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH--LRLAVILFEVVFVLAIASSLLFPFETMG  253 (265)
Q Consensus       187 ~e~~p~--~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~  253 (265)
                      ++..|+  +..|..+|+.+.+..+.+++..+..|.+.+..|  ....+.+.++..++++++.++..|+++.
T Consensus       406 s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       406 SIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999995  455999999999999999999988888666655  3345666667777888888888877653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.30  E-value=2.4e-10  Score=95.72  Aligned_cols=140  Identities=12%  Similarity=0.024  Sum_probs=93.3

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGR-KLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVA  182 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  182 (265)
                      +.+..++++......++.++++++.|+++||+|| |+++.++.++..++.....+.++.+.+++.+++.+++.+...+..
T Consensus        34 g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  113 (418)
T TIGR00889        34 HFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALT  113 (418)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHH
Confidence            5888899999999999999999999999999965 777787777777777666677777777777777777655444443


Q ss_pred             hhh----cc----cccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          183 TIY----AP----EIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       183 ~~~----~~----e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      .++    ..    |......|.+..|      .+|.+++|.+.+.+.. .+.+.++++.+++.++..++.+ ..||+
T Consensus       114 ~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~-~~~~~~f~~~~~~~~~~~~~~~-~~~e~  182 (418)
T TIGR00889       114 NSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI-ELSNIQLYITAGSSALLGVFAL-TLPDI  182 (418)
T ss_pred             HHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHh-cCCCC
Confidence            332    22    2222222333333      4688889999887732 2223456666665555555444 34454

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09669 putative symporter YagG; Provisional

Probab=99.27  E-value=1.2e-10  Score=98.40  Aligned_cols=169  Identities=11%  Similarity=0.102  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhh----hchH-HHHHHHHHH
Q 024637           73 ANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDK----IGRK-LSMVLMFVS  147 (265)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr-~~~~~~~~~  147 (265)
                      ..+..+..+..|++.|.++..          +.+...++....+..+...+..++.|+++||    +||| +.++++.+.
T Consensus        20 ~~~~~~~~~~~~l~~~~t~~~----------gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~   89 (444)
T PRK09669         20 ACNLVWQTVMLFLAYFYTDVF----------GLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIP   89 (444)
T ss_pred             hhhHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHH
Confidence            334444455556666665443          6888899999999999999999999999998    7775 445566666


Q ss_pred             HHHHHHHHhhcch------hHHHHHHHHHHHHHHhhhhhhhhhhccccc-CCCcchhhHHHHHhhhhHHHHHHHHHHHHH
Q 024637          148 ACIFLLPLVFHQS------AVVTTLLLFGVRMCVTGTITVATIYAPEIY-PTPARTTGFGVASSLGKVGGMVCPLVAVGL  220 (265)
Q Consensus       148 ~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l  220 (265)
                      .+++.+++...++      .++.++...+.+.+......+..++.+|+. ++++|.+..+....+..+|+.+++.+...+
T Consensus        90 ~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl  169 (444)
T PRK09669         90 FGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPL  169 (444)
T ss_pred             HHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666655444322      234444445556566666677778899987 457799888888888888888887766555


Q ss_pred             Hhhc-------chhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          221 VTSC-------HLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       221 ~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      ....       +|...+.+.+++..+..+..++..+|.
T Consensus       170 ~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        170 VDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence            4332       445556666666666555555554443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.26  E-value=7e-11  Score=99.47  Aligned_cols=161  Identities=10%  Similarity=0.018  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhh----h
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDK----I  135 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~  135 (265)
                      ..+.++...+++++.....|++..|+|.+.++..          +.+..++..+.+...++++++.+++|+++||    .
T Consensus       271 ~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~----------~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~  340 (495)
T KOG2533|consen  271 KDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNG----------GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF  340 (495)
T ss_pred             hchhHHHHHHHHHHHhhccccHHHHHHHHHHcCC----------CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH
Confidence            3467777888888889999999999999996632          4777788888899999999999999999999    5


Q ss_pred             chHHHHHHHHHHHHHHH-HHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHH-HhhhhHHHHHH
Q 024637          136 GRKLSMVLMFVSACIFL-LPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVA-SSLGKVGGMVC  213 (265)
Q Consensus       136 grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~g~~~~  213 (265)
                      .+|........+..+.. ..+..................+.....+......++......|....... ....+.++.++
T Consensus       341 ~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~  420 (495)
T KOG2533|consen  341 ARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAIS  420 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhh
Confidence            66666665555544444 44444443444444444444556666678888888887766554444444 34444555544


Q ss_pred             HHH-HHHHHhhcchhHHH
Q 024637          214 PLV-AVGLVTSCHLRLAV  230 (265)
Q Consensus       214 ~~i-~~~l~~~~~~~~~~  230 (265)
                      |.+ .+.....++|...+
T Consensus       421 ~~~~~~~~ap~y~~~~~f  438 (495)
T KOG2533|consen  421 GQLFRSLDAPRYGWGAVF  438 (495)
T ss_pred             hhhcccccCcchhhhhHH
Confidence            444 33333445666666

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.24  E-value=4.4e-10  Score=95.67  Aligned_cols=171  Identities=12%  Similarity=0.053  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHh----hhch-HHHHHHHH
Q 024637           71 FFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVD----KIGR-KLSMVLMF  145 (265)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~gr-r~~~~~~~  145 (265)
                      .+...+.+..+..|++.|.++..          +.+...++....+..+...+..++.|+++|    |+|| |+.++++.
T Consensus        15 ~~~~~~~~~~~~~~l~~yyt~v~----------Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~   84 (473)
T PRK10429         15 AFGKDFAIGIVYMYLMYYYTDVV----------GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGT   84 (473)
T ss_pred             hhHHhHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhh
Confidence            33445555555666666665543          578888899999999999999999999999    5698 55566677


Q ss_pred             HHHHHHHHHHhhcch------hHHHHHHHHHHHHHHhhhhhhhhhhccccc-CCCcchhhHHHHHhhhhHHHHHHHHHHH
Q 024637          146 VSACIFLLPLVFHQS------AVVTTLLLFGVRMCVTGTITVATIYAPEIY-PTPARTTGFGVASSLGKVGGMVCPLVAV  218 (265)
Q Consensus       146 ~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~g~~~~~~i~~  218 (265)
                      +..+++.+++...++      .++.++..++..++......+..++.+|+. ++++|....+....+.++|+.+.+.+..
T Consensus        85 i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~  164 (473)
T PRK10429         85 LANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL  164 (473)
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777655544221      223444445566677777788889999998 5788999998877777887777766655


Q ss_pred             HHHhhc-------chhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          219 GLVTSC-------HLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       219 ~l~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      .+.+..       ++.....+.+++..+..+..++..+|.
T Consensus       165 ~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        165 PFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence            443322       233344445555455555555545554

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.23  E-value=1.3e-10  Score=95.98  Aligned_cols=140  Identities=16%  Similarity=0.127  Sum_probs=123.8

Q ss_pred             CCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhh
Q 024637          106 KDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIY  185 (265)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  185 (265)
                      .+...+........+.++.-++.+++.+|+|+-+++.+++.+..+-.+.+.+..|+|..+..-++.|+..+..|....+|
T Consensus       404 ~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY  483 (618)
T KOG3762|consen  404 IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISY  483 (618)
T ss_pred             cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHH
Confidence            33444556666678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcchhhHHHHHhhhh-HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 024637          186 APEIYPTPARTTGFGVASSLGK-VGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSL  245 (265)
Q Consensus       186 ~~e~~p~~~r~~~~g~~~~~~~-~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  245 (265)
                      ++...|++.|+++.++...... +|-.+|++++|.+.+.+|.+..|.++++.+++.+++..
T Consensus       484 ~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  484 ASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             HHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999986654 99999999999999999998888888888776655544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.21  E-value=8.8e-11  Score=96.54  Aligned_cols=129  Identities=15%  Similarity=0.190  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 024637           71 FFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACI  150 (265)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  150 (265)
                      .+......+....+.|.+.++..          +.+..+.+....+..+..+++.++.|+++||+|||+.+..+......
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~  303 (366)
T TIGR00886       234 YSVTFGSFLGVSSIFAMFFKDQF----------GLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAM  303 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHH
Confidence            33344455566667777775443          46667777778888888899999999999999998887777666655


Q ss_pred             HHHHHhh--cc--hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHH
Q 024637          151 FLLPLVF--HQ--SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGG  210 (265)
Q Consensus       151 ~~~~~~~--~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~  210 (265)
                      +..++.+  ..  +.+..++...+..++.+...+..++.+++.+| +++|++.|+.+..+++|+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       304 GAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence            5544443  22  45555555556666777777888888999887 589999999998888763

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.19  E-value=1.9e-09  Score=89.71  Aligned_cols=119  Identities=11%  Similarity=0.016  Sum_probs=84.4

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHH-HHHHHHHHHhh--cchhHHHHHHHHHHHHHHhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV-SACIFLLPLVF--HQSAVVTTLLLFGVRMCVTGTIT  180 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~  180 (265)
                      +.+....++......++.++++++.+++.||++++........ +..+.......  ..+.+......++.+++.+...+
T Consensus       239 g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  318 (394)
T PRK11652        239 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFP  318 (394)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            4566666777777777888888889999999884433322222 22222222211  23445566667778888888889


Q ss_pred             hhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh
Q 024637          181 VATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS  223 (265)
Q Consensus       181 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~  223 (265)
                      ....+..|.+| +.++++.++.+....+|+.+++.+.+.+...
T Consensus       319 ~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        319 LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            99999999887 4689999999999999999999999887654

>TIGR00788 fbt folate/biopterin transporter

Probab=99.18  E-value=2.2e-09  Score=91.13  Aligned_cols=177  Identities=15%  Similarity=0.086  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhc-----
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIG-----  136 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----  136 (265)
                      ....++...++..... +.....++.++++..          +.+..+++...+...+.-.+- +++|.++||++     
T Consensus        26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~l----------g~s~~~i~~~~sl~~lpw~~K-~l~g~l~D~~~i~G~r   93 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDL----------GLDGARYQRLVGLSSLGWALK-PFAGVMSDTFPLFGYT   93 (468)
T ss_pred             hHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhc----------CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcc
Confidence            3334444456666666 444444444553322          577788777777777776664 45999999997     


Q ss_pred             hHHHHHHHHHHHH-HHHHHHhhcch-hHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhh---HHHHHhhhhHHHH
Q 024637          137 RKLSMVLMFVSAC-IFLLPLVFHQS-AVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTG---FGVASSLGKVGGM  211 (265)
Q Consensus       137 rr~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~---~g~~~~~~~~g~~  211 (265)
                      ||+.++++.++.. ++...+...++ .....+..++.+++.+.......++..|..+ +.+...   .++.+...++|..
T Consensus        94 Rr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~  172 (468)
T TIGR00788        94 KRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGL  172 (468)
T ss_pred             chHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHH
Confidence            6777777776663 43333333333 3333346677788888888899999999998 544443   3344444458999


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          212 VCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       212 ~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      +++.+.|.+.+..+|+..+.+.+++.++..+...++ +|.+
T Consensus       173 vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~-~E~~  212 (468)
T TIGR00788       173 ISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS-KERR  212 (468)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc-cccc
Confidence            999999999999999999888888777664444444 4643

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.14  E-value=2.2e-10  Score=96.32  Aligned_cols=168  Identities=12%  Similarity=0.063  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHh----hhchHHHHH-HHHHH
Q 024637           73 ANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVD----KIGRKLSMV-LMFVS  147 (265)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~-~~~~~  147 (265)
                      ...+.+.....+++.+..+..          +.++...+....+..+...+..++.|+++|    |+|||+..+ ++...
T Consensus        12 ~~~~~~~~~~~~~~~f~~~~~----------gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~   81 (428)
T PF13347_consen   12 GYNMIWSLLSSYLLYFYTDVL----------GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAIL   81 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHH
Confidence            334444444445555554443          577788888888888888899999999999    789776554 67777


Q ss_pred             HHHHHHHHhhc-c-------hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC-CcchhhHHHHHhhhhHHHHHHHHHHH
Q 024637          148 ACIFLLPLVFH-Q-------SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPT-PARTTGFGVASSLGKVGGMVCPLVAV  218 (265)
Q Consensus       148 ~~~~~~~~~~~-~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~~g~~~~~~i~~  218 (265)
                      .+++.+++... +       ...+..+..++..++......+..++.+|+.+. ++|....+....+..+|..+...+.+
T Consensus        82 ~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~  161 (428)
T PF13347_consen   82 LALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAP  161 (428)
T ss_pred             HHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            77777777654 3       122345555666778888888889999999984 68999999999988888887777777


Q ss_pred             HHHhhc-------chhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          219 GLVTSC-------HLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       219 ~l~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      .+.+..       ++.....+.+++.++..++..+..+|
T Consensus       162 ~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  162 ILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             hhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            766543       35566666677777777777676666

>TIGR00788 fbt folate/biopterin transporter

Probab=99.12  E-value=3e-10  Score=96.34  Aligned_cols=122  Identities=11%  Similarity=0.032  Sum_probs=104.8

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh----------cchhHHHHHHHHHHHH
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----------HQSAVVTTLLLFGVRM  173 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~  173 (265)
                      +.++...+......+++.+++..+.+++.+|++.|+++.++.++.+++.+....          .++.+......++.++
T Consensus       284 G~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~  363 (468)
T TIGR00788       284 PGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEV  363 (468)
T ss_pred             CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHH
Confidence            688899999999999999999999999999999999999999988887755431          1333345555677788


Q ss_pred             HHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcc
Q 024637          174 CVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH  225 (265)
Q Consensus       174 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~  225 (265)
                      +.+..+.+...++++..|++.+|+.+++.+++.++|..+++.+++.+.+..|
T Consensus       364 ~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       364 LAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8888888889999999999999999999999999999999999999998877

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11462 putative transporter; Provisional

Probab=99.12  E-value=4.7e-09  Score=89.00  Aligned_cols=167  Identities=11%  Similarity=0.036  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhh----hchHHH-HHHHHHHHH
Q 024637           75 VFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDK----IGRKLS-MVLMFVSAC  149 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~-~~~~~~~~~  149 (265)
                      +..+.....|+..|.++..          +.++..++....+.-+...+.-++.|+++||    +|||+. ++++.+..+
T Consensus        22 ~~~~~~~~~~l~~fyt~~~----------Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~   91 (460)
T PRK11462         22 HIIFDNVMLYMMFFYTDIF----------GIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFG   91 (460)
T ss_pred             hHHHHHHHHHHHHHHHHhh----------CCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHH
Confidence            3444444455555554433          6888888888888889999999999999996    687655 455667777


Q ss_pred             HHHHHHhhcch------hHHHHHHHHHHHHHHhhhhhhhhhhcccccC-CCcchhhHHHHHhhhhHHHHHHHHHHHHHHh
Q 024637          150 IFLLPLVFHQS------AVVTTLLLFGVRMCVTGTITVATIYAPEIYP-TPARTTGFGVASSLGKVGGMVCPLVAVGLVT  222 (265)
Q Consensus       150 ~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~  222 (265)
                      ++.+++...++      ..+..+..++..++......+..++.+|+.+ .++|.+..++...++.+|+.+++.+...+..
T Consensus        92 i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~  171 (460)
T PRK11462         92 IVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVN  171 (460)
T ss_pred             HHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766654331      2334455556677777777888899999987 6789999999999999998888887766655


Q ss_pred             hcc-------hhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          223 SCH-------LRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       223 ~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      ..|       |.....+++++.+++..++++..+|.
T Consensus       172 ~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        172 LIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence            433       44444555555555555555544454

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.12  E-value=8.4e-09  Score=86.36  Aligned_cols=175  Identities=10%  Similarity=-0.096  Sum_probs=101.4

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAI  130 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  130 (265)
                      +++.+++++   .++...+..+......+.+..+.|.+.++..          +.+..+.++.......+..+++.+.++
T Consensus       210 ~~~~ll~~~---~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~----------g~s~~~~gl~~~~~~~~~~i~~~l~~~  276 (413)
T PRK15403        210 DFRNVFRNR---LFLTGAATLSLSYIPMMSWVAVSPVILIDAG----------GMTTSQFAWTQVPVFGAVIVANAIVAR  276 (413)
T ss_pred             HHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHhChHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555443   3333333334444555666667788876554          467777777776667777787888777


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHh-----hcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhh
Q 024637          131 IVDKIGRKLSMVLMFVSACIFLLPLV-----FHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSL  205 (265)
Q Consensus       131 l~dr~grr~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~  205 (265)
                      +.++..+++.......+..++.+++.     ..++.+..++..++.+++.+...+......-.-. ...+|++.++.+..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~-~~~~G~a~a~~~~~  355 (413)
T PRK15403        277 FVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSN-NLPKGTVSASLNMV  355 (413)
T ss_pred             HhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccC-CCCCcHHHHHHHHH
Confidence            66544443333222222222221111     1233333455666677777777777664332111 22379999999888


Q ss_pred             hhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 024637          206 GKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA  240 (265)
Q Consensus       206 ~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~  240 (265)
                      ...+..+++...+++.+. +...++...++++.+.
T Consensus       356 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~  389 (413)
T PRK15403        356 ILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI  389 (413)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence            888888999999988766 5556666655554443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.10  E-value=2.5e-08  Score=79.47  Aligned_cols=150  Identities=15%  Similarity=0.035  Sum_probs=110.0

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      +.+..++..+.....+...+...+.|.++||+|||+..++.+++..++++... .+++..+++.+++.|++....++..-
T Consensus        65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-~~~~~~L~~GRvlgGiaTSLLfS~FE  143 (354)
T PF05631_consen   65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-SSNYPVLLLGRVLGGIATSLLFSAFE  143 (354)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            47778888888888899999999999999999999999999998888886443 57788899999999999988887766


Q ss_pred             hhcc-cc----cCCCcchhhHHHHHhhhh-HHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHhcCCcccccc
Q 024637          184 IYAP-EI----YPTPARTTGFGVASSLGK-VGGMVCPLVAVGLVTSCH--LRLAVILFEVVFVLAIASSLLFPFETMGR  254 (265)
Q Consensus       184 ~~~~-e~----~p~~~r~~~~g~~~~~~~-~g~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (265)
                      ++.. |.    +|.+..+..++......+ +-++.+..++-++.+..+  ...+|.....+..++.+++....+|..+.
T Consensus       144 sW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  144 SWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD  222 (354)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence            6443 33    555555555554443333 344455555555566554  46788777777778877777766676543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.09  E-value=2.1e-09  Score=88.05  Aligned_cols=144  Identities=15%  Similarity=0.148  Sum_probs=85.9

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHH--HHHHHH-hh----cchhHH-HHHHHHHHHHHH
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSAC--IFLLPL-VF----HQSAVV-TTLLLFGVRMCV  175 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~--~~~~~~-~~----~~~~~~-~~~~~~~~g~~~  175 (265)
                      |.+.++++...++..+..++..++.|.++||+|.||-++....+..  .+.+.. .+    ..+.+. .++.....++..
T Consensus        39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f  118 (412)
T PF01306_consen   39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF  118 (412)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6888999999999999999999999999999996665443332222  222221 11    122221 122222233444


Q ss_pred             hhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          176 TGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       176 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      .+..++.-+++.+.-  +..+.-+|=....+++|.++++.++|.+.+. +.+..+++..+..++..++.++..|+
T Consensus       119 ~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~~~~~  190 (412)
T PF01306_consen  119 NAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLLLKPD  190 (412)
T ss_dssp             TTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred             cccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            444455555554432  3345667777899999999999999999875 45566665555545555555555443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.09  E-value=1.6e-08  Score=83.84  Aligned_cols=124  Identities=16%  Similarity=0.185  Sum_probs=95.8

Q ss_pred             HHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHhhc
Q 024637           80 GAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIG-RKLSMVLMFVSACIFLLPLVFH  158 (265)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-rr~~~~~~~~~~~~~~~~~~~~  158 (265)
                      ....+.|.++++.           +.+..+++...++..+..+++.+++|+++||.+ +|+.+.+..++.++..+.....
T Consensus        20 ~~~p~~~~~L~~~-----------G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~   88 (400)
T PF03825_consen   20 AFLPYLPLYLESR-----------GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS   88 (400)
T ss_pred             HHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445567777555           488899999999999999999999999999985 6677777777777777666667


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHH
Q 024637          159 QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLV  216 (265)
Q Consensus       159 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i  216 (265)
                      .+.+.++...++..++.....|...++..+...  .++.-+|-....+.+|-+++...
T Consensus        89 ~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~  144 (400)
T PF03825_consen   89 SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA  144 (400)
T ss_pred             ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence            777777777777777777777888888877765  35666777778888887777554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.05  E-value=3.4e-08  Score=78.37  Aligned_cols=158  Identities=13%  Similarity=-0.014  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHh
Q 024637           77 SYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV  156 (265)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  156 (265)
                      ...+....++.+-.+.           +.+.+..+++.++..++..+.+++..++.+|+|.++.+..+.++.+++.++=.
T Consensus        27 ~itsvgPLL~~Ir~~~-----------gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~   95 (395)
T COG2807          27 AITSVGPLLDEIRQDL-----------GLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRS   95 (395)
T ss_pred             hhhhhhhhHHHHHHHh-----------cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            4455666677666443           58889999999999999999999999999999999999999999998887766


Q ss_pred             hcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc-chhHHHHHHHH
Q 024637          157 FHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEV  235 (265)
Q Consensus       157 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~-~~~~~~~~~~~  235 (265)
                      .. +...++....+.|.+.+..+...+..+-+.||++ -+..+|++.....+|+.+++.+...+.++. +|+..+.+.+.
T Consensus        96 ~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl  173 (395)
T COG2807          96 LG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWAL  173 (395)
T ss_pred             cc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHH
Confidence            55 5667778888899999999999999999999986 688999999999999999999999998887 79999999988


Q ss_pred             HHHHHHHHHhcC
Q 024637          236 VFVLAIASSLLF  247 (265)
Q Consensus       236 ~~~i~~~~~~~~  247 (265)
                      ..+++++..+.-
T Consensus       174 ~allAl~~WlPq  185 (395)
T COG2807         174 LALLALLIWLPQ  185 (395)
T ss_pred             HHHHHHHHHhhh
Confidence            888877665544

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.03  E-value=1.2e-08  Score=85.56  Aligned_cols=136  Identities=23%  Similarity=0.255  Sum_probs=111.6

Q ss_pred             HHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcch
Q 024637          117 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPART  196 (265)
Q Consensus       117 ~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~  196 (265)
                      .++..++.+++.|.++||+|||..+.+....+.+..+...+..  |+.++..-+.| +.+..++...+++++....+.|.
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~~~~l~g-~~~~~~s~~~a~vadis~~~~R~  147 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFLLLGLSG-GFSAIFSVGFAYVADISSEEERS  147 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhhhccccc-chhhhhhhhhhheeeccchhHHH
Confidence            3577788899999999999999999999888888877766654  33333222222 34556688999999999999999


Q ss_pred             hhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccccc
Q 024637          197 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRE  255 (265)
Q Consensus       197 ~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  255 (265)
                      ...|+.+.....+..++|.+.+.+....|....+.+..+..++..+..++..||+...+
T Consensus       148 ~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~  206 (463)
T KOG2816|consen  148 SSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK  206 (463)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence            99999999999999999999999999999988998888888888888888888876543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.00  E-value=4.3e-09  Score=87.49  Aligned_cols=148  Identities=16%  Similarity=0.158  Sum_probs=111.4

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHHHHh-h---cc-hhHHHHHHHHHHHHHHhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGR-KLSMVLMFVSACIFLLPLV-F---HQ-SAVVTTLLLFGVRMCVTG  177 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~~~g~~~~~  177 (265)
                      +.+.+..++......++..+++++.|+...|.+. |+.++.+.+++.++.++.. .   .+ ..+++++.+++.|++.+.
T Consensus        67 ~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n  146 (488)
T KOG2325|consen   67 TATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN  146 (488)
T ss_pred             CCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc
Confidence            3556777889999999999999999999999885 7777888888888877663 2   33 577888999999988665


Q ss_pred             hhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc-------------chhHHHHHHHHHHHHHHHHH
Q 024637          178 TITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC-------------HLRLAVILFEVVFVLAIASS  244 (265)
Q Consensus       178 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~-------------~~~~~~~~~~~~~~i~~~~~  244 (265)
                      . +..-.|+++..-.+.|.++++.......+|.++||.+...+....             -+..+-++.+++.++..++.
T Consensus       147 ~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i  225 (488)
T KOG2325|consen  147 F-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVII  225 (488)
T ss_pred             H-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHH
Confidence            4 788889998777778888888888777777777777766554211             12355667777777777777


Q ss_pred             hcCCcccc
Q 024637          245 LLFPFETM  252 (265)
Q Consensus       245 ~~~~~~~~  252 (265)
                      .++.+|..
T Consensus       226 ~~~f~E~~  233 (488)
T KOG2325|consen  226 LFFFKEVY  233 (488)
T ss_pred             Hhheeecc
Confidence            76665543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.99  E-value=4.9e-08  Score=83.14  Aligned_cols=140  Identities=12%  Similarity=0.006  Sum_probs=103.4

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhch-----HHH--HHHHHHHHHHHHHHHhh---------cchhHHHHHHHHHHHH
Q 024637          110 LYVDVFIASLAELPGLILSAIIVDKIGR-----KLS--MVLMFVSACIFLLPLVF---------HQSAVVTTLLLFGVRM  173 (265)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~g~l~dr~gr-----r~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~  173 (265)
                      ..+..++..+.-++..++..++..|.+|     +..  +.++.++.+++.+.+.+         ..+.++.+...++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            4455565555555665554443333333     333  36677777777666553         3577888888999999


Q ss_pred             HHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCc
Q 024637          174 CVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  249 (265)
Q Consensus       174 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  249 (265)
                      +-....|...+++.+..|++.||+.+|+......+|..+++.+.....+..++...+...+++.++..++.+++.|
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887766667777777777777666666555543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.97  E-value=2.7e-08  Score=87.05  Aligned_cols=143  Identities=13%  Similarity=0.130  Sum_probs=107.5

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHhhcch--------hHHHHHHHHHHHHH
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFHQS--------AVVTTLLLFGVRMC  174 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~  174 (265)
                      +.+...+......+....-+..+++|+++|+ +||++.+.++.++..++.+++.....        ....++...+..+|
T Consensus        19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G   98 (654)
T TIGR00926        19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG   98 (654)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh
Confidence            3555555555555555666778899999997 69999999999998888877765211        12345566677788


Q ss_pred             HhhhhhhhhhhcccccCCC---cchhhHHHHHhhhhHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHHHHHHHH
Q 024637          175 VTGTITVATIYAPEIYPTP---ARTTGFGVASSLGKVGGMVCPLVAVGLVTSC-------HLRLAVILFEVVFVLAIASS  244 (265)
Q Consensus       175 ~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~-------~~~~~~~~~~~~~~i~~~~~  244 (265)
                      .|+.-+...+...|.++.+   .|-..+.+.+...++|+.+++.+.+++.+..       +|...|.+.+++.+++.++.
T Consensus        99 ~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926        99 TGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF  178 (654)
T ss_pred             ccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence            8888899999999988754   4778888899999999999999999987543       47777777777777666655


Q ss_pred             hc
Q 024637          245 LL  246 (265)
Q Consensus       245 ~~  246 (265)
                      ..
T Consensus       179 ~~  180 (654)
T TIGR00926       179 MA  180 (654)
T ss_pred             HH
Confidence            44

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.94  E-value=1.4e-08  Score=82.65  Aligned_cols=193  Identities=16%  Similarity=0.067  Sum_probs=131.3

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHH
Q 024637           49 FSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILS  128 (265)
Q Consensus        49 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (265)
                      ..+.++++++   +++++..+++.+....+|+....+...+...           +.+....++......+++++++++.
T Consensus       256 ~~si~~~~~n---~~F~il~~~ygi~~g~F~~l~~~l~~~l~~s-----------gY~~~~aG~ig~l~iv~Gmlga~~~  321 (480)
T KOG2563|consen  256 PKSIKSCFKN---RQFIILAICYGIGLGLFNSLSTLLNLALCPS-----------GYEGVFAGYIGALMIVAGMLGALAS  321 (480)
T ss_pred             HHHHHHHHcC---ccHHHHHHHHhhhHHHHHHHHHHhhhccccc-----------cCCccccchhHHHHHHHHHHHHHHH
Confidence            3456666654   4555666666666666666665555333222           3444677888888889999999999


Q ss_pred             HHHHhhhchH-HHHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHH
Q 024637          129 AIIVDKIGRK-LSMVLMFVSACIFLLPLVF----HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVAS  203 (265)
Q Consensus       129 g~l~dr~grr-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~  203 (265)
                      |.+.||.+.- .+.++......++...+..    ....+.+.....+.|++..+..|+..-+..|..-+..-++..|+.+
T Consensus       322 gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~  401 (480)
T KOG2563|consen  322 GIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLN  401 (480)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEE
Confidence            9999998654 4444444444444222221    2334455666777888888888999999999877777889999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHhcCCccccccc
Q 024637          204 SLGKVGGMVCPLVAVGLVTSCH----LRLAVILFEVVFVLAIASSLLFPFETMGRE  255 (265)
Q Consensus       204 ~~~~~g~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  255 (265)
                      ..+.+-+++-.++.+...+..+    +...-+.....+.+.+++..++.|+.++.+
T Consensus       402 ~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~  457 (480)
T KOG2563|consen  402 LSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLR  457 (480)
T ss_pred             eehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHh
Confidence            9999999999999998888776    444445555556666666677765544433

>PRK09848 glucuronide transporter; Provisional

Probab=98.89  E-value=1.2e-07  Score=80.34  Aligned_cols=115  Identities=11%  Similarity=0.128  Sum_probs=73.7

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh----chHHHH-HHHHHHHHHHHHHHhh-c----ch--hHHHHHHHHHH
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKI----GRKLSM-VLMFVSACIFLLPLVF-H----QS--AVVTTLLLFGV  171 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----grr~~~-~~~~~~~~~~~~~~~~-~----~~--~~~~~~~~~~~  171 (265)
                      +.+...++....+..+...+..++.|+++||.    |||+.. .++.+...+..+++.. .    .+  .++.++...+.
T Consensus        40 gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (448)
T PRK09848         40 GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGL  119 (448)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHH
Confidence            57888999999999999999999999999986    777754 4555544444433321 1    11  22233444556


Q ss_pred             HHHHhhhhhhhhhhcccccCC-CcchhhHHHHHhhhh-----HHHHHHHHHHH
Q 024637          172 RMCVTGTITVATIYAPEIYPT-PARTTGFGVASSLGK-----VGGMVCPLVAV  218 (265)
Q Consensus       172 g~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~-----~g~~~~~~i~~  218 (265)
                      +++.+...++..++..++.+. ++|....+.-....+     ++..++|.+.+
T Consensus       120 ~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848        120 GLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             HHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666777777777777776654 568776665544333     34445555544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.81  E-value=3.1e-07  Score=76.42  Aligned_cols=171  Identities=15%  Similarity=0.098  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhh----hchHH-HHHHHHH
Q 024637           72 FANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDK----IGRKL-SMVLMFV  146 (265)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~-~~~~~~~  146 (265)
                      +..+..+-....|+..|.++..          +.++..++.++.+.-+...+.-++.|.++||    +||++ .++++.+
T Consensus        22 ~~~~~~~~~~~~yLl~fYTdv~----------Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i   91 (467)
T COG2211          22 FASNFAFGIVVLYLLFFYTDVF----------GLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI   91 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHhccc----------CCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH
Confidence            3344445555667777776665          6888888888888888899999999999996    67655 4566767


Q ss_pred             HHHHHHHHHhhcc------hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC-CcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          147 SACIFLLPLVFHQ------SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPT-PARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       147 ~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      ..++...++..++      +....++...+.+++......+..++.+|+.+. ++|.+..+.-+.+.++|+.+..++.+.
T Consensus        92 p~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~p  171 (467)
T COG2211          92 PFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPP  171 (467)
T ss_pred             HHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777776644      244556667778888888888889999999864 679999999999999999888888887


Q ss_pred             HHhhc-------chhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          220 LVTSC-------HLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       220 l~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      +....       |+.....+++++.++..+++++-.+|+.
T Consensus       172 lv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~  211 (467)
T COG2211         172 LVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERV  211 (467)
T ss_pred             HHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            77543       4445555555555556666665554543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.81  E-value=4.2e-07  Score=73.73  Aligned_cols=121  Identities=9%  Similarity=-0.000  Sum_probs=104.3

Q ss_pred             CCCCCchHHHHHHHHHhhhhHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHhhh
Q 024637          103 DKSKDNSLYVDVFIASLAELPGLILSAIIVD-KIGRKLSMVLMFVSACIFLLPLVF---HQSAVVTTLLLFGVRMCVTGT  178 (265)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~  178 (265)
                      ++++..+...+......+.++|..+.|++.. |.++++...+++..+.++..++..   ..+.+.+....++.|++.|..
T Consensus       239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f  318 (403)
T PF03209_consen  239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLF  318 (403)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHH
Confidence            3788899999999999999999999998776 678888888888888877766554   566788888899999999999


Q ss_pred             hhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh
Q 024637          179 ITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS  223 (265)
Q Consensus       179 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~  223 (265)
                      .....+...++.+++..|+.+|.-.....++..++.+++|.+.|.
T Consensus       319 ~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  319 TVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             HHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999999999999999999999988774

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.81  E-value=2.1e-07  Score=79.83  Aligned_cols=138  Identities=8%  Similarity=-0.091  Sum_probs=91.7

Q ss_pred             HHHHHHHHhhhhHHHHHH----HHHHhhhchHHHHHHHHHHHHHHHHHHhhcch---------hHHHHHHHHHHHHHHhh
Q 024637          111 YVDVFIASLAELPGLILS----AIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS---------AVVTTLLLFGVRMCVTG  177 (265)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~----g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~  177 (265)
                      .+..++..+..++..++.    +++.+|.+..+.+.++.++.+++.+.+....+         .++.+...++.+++-..
T Consensus       319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~  398 (500)
T PRK09584        319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM  398 (500)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence            444444554444444444    55566666667788899999998877665332         45677788889999999


Q ss_pred             hhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHh----------hcchhHHHHHHHHHHHHHHHHHhcC
Q 024637          178 TITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVT----------SCHLRLAVILFEVVFVLAIASSLLF  247 (265)
Q Consensus       178 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~----------~~~~~~~~~~~~~~~~i~~~~~~~~  247 (265)
                      ..|...+++.+..|++.||..+|+......+|..++..+......          ..+....|...+++.++.+++.+..
T Consensus       399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~  478 (500)
T PRK09584        399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT  478 (500)
T ss_pred             HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999997766665666555555432110          1124456666666655444444443


Q ss_pred             C
Q 024637          248 P  248 (265)
Q Consensus       248 ~  248 (265)
                      .
T Consensus       479 ~  479 (500)
T PRK09584        479 A  479 (500)
T ss_pred             H
Confidence            3

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.79  E-value=2.1e-07  Score=75.94  Aligned_cols=119  Identities=16%  Similarity=0.020  Sum_probs=88.9

Q ss_pred             CCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhc------chhH--HHHHHHHHHHHHHhh
Q 024637          106 KDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH------QSAV--VTTLLLFGVRMCVTG  177 (265)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~g~~~~~  177 (265)
                      +.....|...++++..++..+.+-|+.||+|-|....++....+++..+=..+      +..+  .......+.+...-.
T Consensus        77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~F  156 (480)
T KOG2563|consen   77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPF  156 (480)
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhH
Confidence            55667788999999999999999999999999999999999999988765542      2233  333444444433333


Q ss_pred             hhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 024637          178 TITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC  224 (265)
Q Consensus       178 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~  224 (265)
                      ......-...-+||+++|+++..+..+...+|.+++-++.+.+..+.
T Consensus       157 im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  157 ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            32333344556799999999999998888899999888888777553

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.75  E-value=4.2e-07  Score=77.67  Aligned_cols=138  Identities=11%  Similarity=-0.055  Sum_probs=97.5

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHH-------HHHHHHHHHHHHHHHHh-----h-----cchhHHHHHHHHHHHH
Q 024637          111 YVDVFIASLAELPGLILSAIIVDKIGRKL-------SMVLMFVSACIFLLPLV-----F-----HQSAVVTTLLLFGVRM  173 (265)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~-------~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~g~  173 (265)
                      .+...+..+..++.+++.+++.||+++|+       -+.++.++.+++.+.+.     .     ..+.++.+...++.++
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            34444444556677888899999999886       36667677666654321     1     1345667777888999


Q ss_pred             HHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHh---------hc-chhHHHHHHHHHHHHHHHH
Q 024637          174 CVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVT---------SC-HLRLAVILFEVVFVLAIAS  243 (265)
Q Consensus       174 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~---------~~-~~~~~~~~~~~~~~i~~~~  243 (265)
                      +.+...++...++.+..|++.++.++|+.+....+|+.++..+......         .. ...+.|...++..++..++
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~  471 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV  471 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888887764421         01 1234555566555555555


Q ss_pred             HhcCC
Q 024637          244 SLLFP  248 (265)
Q Consensus       244 ~~~~~  248 (265)
                      .++..
T Consensus       472 ~~~~~  476 (489)
T PRK10207        472 MALMV  476 (489)
T ss_pred             HHHHH
Confidence            54443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=3.1e-08  Score=79.45  Aligned_cols=140  Identities=14%  Similarity=0.074  Sum_probs=106.2

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhhhc--hHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhh
Q 024637          108 NSLYVDVFIASLAELPGLILSAIIVDKIG--RKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIY  185 (265)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  185 (265)
                      -..++.+.-..+...++..+.|.+.||++  |....+.+.+..+.+.....+.++...+++-.+..+++.+...+.....
T Consensus       306 w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~  385 (464)
T KOG3764|consen  306 WEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPT  385 (464)
T ss_pred             cceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence            36677777778889999999999999999  6555666777777777777777777776666666666666655554444


Q ss_pred             cccccCC---C---cchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcC
Q 024637          186 APEIYPT---P---ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  247 (265)
Q Consensus       186 ~~e~~p~---~---~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  247 (265)
                      ..++...   +   .-|...++......+|.++||.++|.+.+..|+.|...+.++..++-.-+...+
T Consensus       386 l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  386 LGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             hHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444433   3   567888999999999999999999999999999999888888877666555444

>PTZ00207 hypothetical protein; Provisional

Probab=98.66  E-value=3e-07  Score=79.40  Aligned_cols=138  Identities=9%  Similarity=0.058  Sum_probs=98.0

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhch---------HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhh
Q 024637          113 DVFIASLAELPGLILSAIIVDKIGR---------KLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVAT  183 (265)
Q Consensus       113 ~~~~~~~~~~~~~~~~g~l~dr~gr---------r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (265)
                      ..++.++++.+|.+..|.+....-+         --.+.+..+ +.++.+++++......+++..++.|++.|..+++..
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~  474 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA  474 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence            6777889999999999988722222         222334444 556555555543335688888999999999999999


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHH-HHHHHHHHhhcc-------------hhHHHHHHHHHHHHHHHHHhcCCc
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVC-PLVAVGLVTSCH-------------LRLAVILFEVVFVLAIASSLLFPF  249 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~-~~i~~~l~~~~~-------------~~~~~~~~~~~~~i~~~~~~~~~~  249 (265)
                      ..++|+|. ++-|+-+.+.....-+|+.+- -.++|.+.|.-.             .+.+|++++++++++.+....+.-
T Consensus       475 ~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~  553 (591)
T PTZ00207        475 LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHL  553 (591)
T ss_pred             HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheee
Confidence            99999999 777777777777666776665 567777776422             357888999999888877665543


Q ss_pred             ccc
Q 024637          250 ETM  252 (265)
Q Consensus       250 ~~~  252 (265)
                      +++
T Consensus       554 R~r  556 (591)
T PTZ00207        554 QYR  556 (591)
T ss_pred             ehH
Confidence            443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.58  E-value=2.9e-06  Score=71.44  Aligned_cols=146  Identities=20%  Similarity=0.172  Sum_probs=104.6

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh---c--hHHHHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHHHHH
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKI---G--RKLSMVLMFVSACIFLLPLVF----HQSAVVTTLLLFGVRMC  174 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~---g--rr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~  174 (265)
                      +.++.+......+..+. ...-++.|.++|-+   |  ||+-++++.++..++.+.+..    ..+.....++.++..++
T Consensus        21 ~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g   99 (433)
T PF03092_consen   21 GLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFG   99 (433)
T ss_pred             CCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence            56666665555554433 45678999999986   3  555566677776555555544    23444555666777778


Q ss_pred             HhhhhhhhhhhcccccCC--CcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          175 VTGTITVATIYAPEIYPT--PARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       175 ~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      ......+.-+++.|....  +.||.-.+.......+|++++..+.|.+.+..+.+..+.+.+.+..+..+..+++.+|
T Consensus       100 ~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  100 YAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            888888888888888632  2377888888888889999999999999999888888888877777776666666655

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.58  E-value=8.3e-07  Score=71.08  Aligned_cols=120  Identities=18%  Similarity=0.085  Sum_probs=95.8

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhc--hHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIG--RKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITV  181 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  181 (265)
                      +.++.+.+-+....++...+......+..||..  -+-.+..+..++.-..+.+........++....+..+......+.
T Consensus       293 g~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~  372 (451)
T KOG2615|consen  293 GYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTC  372 (451)
T ss_pred             CCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHH
Confidence            577777777777777777777777777777765  555666666666666666666777777777788888877777788


Q ss_pred             hhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh
Q 024637          182 ATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS  223 (265)
Q Consensus       182 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~  223 (265)
                      ...++....|...||+..|+..+.+.++-++||.+.|.+...
T Consensus       373 Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  373 LTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            899999999999999999999999999999999999877653

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.57  E-value=7.9e-07  Score=77.42  Aligned_cols=161  Identities=14%  Similarity=0.122  Sum_probs=107.1

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHH-hhhhHHHHHH
Q 024637           50 SSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIAS-LAELPGLILS  128 (265)
Q Consensus        50 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  128 (265)
                      .+++.++++   +.++...+...+....+.++..|+|.|++.+.          +.++..+..+....+ .+..+|.+++
T Consensus       383 ~s~~~ll~N---~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qf----------g~sas~An~l~G~i~vp~~~~Gi~lG  449 (735)
T KOG3626|consen  383 KSIKRLLSN---PIFMLVVLASVIESLAITGYITFLPKYLETQF----------GISASLANILTGSIGVPAAAVGIFLG  449 (735)
T ss_pred             HHHHHHhcC---chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHc----------CCCHHHHHHHhhhhhhhhhhhhhhcc
Confidence            344555543   45556666677777888889999999998777          677777766664444 4556788899


Q ss_pred             HHHHhhh--chHHHHHHHHHHHHHHHHH---Hhhcc--------------------------------------------
Q 024637          129 AIIVDKI--GRKLSMVLMFVSACIFLLP---LVFHQ--------------------------------------------  159 (265)
Q Consensus       129 g~l~dr~--grr~~~~~~~~~~~~~~~~---~~~~~--------------------------------------------  159 (265)
                      |++..|+  +.|....+..+...++.+.   ..+..                                            
T Consensus       450 G~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVC  529 (735)
T KOG3626|consen  450 GLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVC  529 (735)
T ss_pred             ceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCccc
Confidence            9999986  4555444444443333332   22200                                            


Q ss_pred             -------------------------------------------------------hhHHHHHHHHHHHHHHhhhhhhhhh
Q 024637          160 -------------------------------------------------------SAVVTTLLLFGVRMCVTGTITVATI  184 (265)
Q Consensus       160 -------------------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~  184 (265)
                                                                             ....+++..++..+..+....+.+.
T Consensus       530 g~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~  609 (735)
T KOG3626|consen  530 GENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGML  609 (735)
T ss_pred             CCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceE
Confidence                                                                   0112233333333344444466777


Q ss_pred             hcccccCCCcchhhHHHHHhhhh-HHHHHHHHHHHHHHhh
Q 024637          185 YAPEIYPTPARTTGFGVASSLGK-VGGMVCPLVAVGLVTS  223 (265)
Q Consensus       185 ~~~e~~p~~~r~~~~g~~~~~~~-~g~~~~~~i~~~l~~~  223 (265)
                      ++-..+|++.|..++|+..++.+ +|.+-+|++.|+++|.
T Consensus       610 i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  610 IVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             EEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence            77788999999999999998888 7899999999999985

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.55  E-value=8e-06  Score=69.39  Aligned_cols=143  Identities=19%  Similarity=0.228  Sum_probs=100.3

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHH-HHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 024637          111 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVL-MFVSACIFLLPLVF--HQSAVVTTLLLFGVRMCVTGTITVATIYAP  187 (265)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  187 (265)
                      +...++..+...+..++.|.++|+-++||.++. ..++..++..++.+  ..+++...++.++..++.+.......++.+
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP  152 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLP  152 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            455667777888889999999999987766554 44444455555555  333445555566666778888888999999


Q ss_pred             cccCCCcc--------------------------hhhHHHHHhhhhHHHHHHHHHHHHHHhhc--------chhHHHHHH
Q 024637          188 EIYPTPAR--------------------------TTGFGVASSLGKVGGMVCPLVAVGLVTSC--------HLRLAVILF  233 (265)
Q Consensus       188 e~~p~~~r--------------------------~~~~g~~~~~~~~g~~~~~~i~~~l~~~~--------~~~~~~~~~  233 (265)
                      |+.+++.+                          ++..+.....+++|+.+.-.+.-.+....        ..+..+.+.
T Consensus       153 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~  232 (477)
T PF11700_consen  153 DLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIV  232 (477)
T ss_pred             hhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHH
Confidence            99998888                          99999999999999988777665554322        235556666


Q ss_pred             HHHHHHHHHHHhcCCccccc
Q 024637          234 EVVFVLAIASSLLFPFETMG  253 (265)
Q Consensus       234 ~~~~~i~~~~~~~~~~~~~~  253 (265)
                      ++..++..+..++..|++++
T Consensus       233 a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  233 ALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHhCCCCCC
Confidence            66666666665655555543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.54  E-value=1e-05  Score=64.22  Aligned_cols=125  Identities=20%  Similarity=0.215  Sum_probs=93.4

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHhhhhhhhhhhc
Q 024637          109 SLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS--AVVTTLLLFGVRMCVTGTITVATIYA  186 (265)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~  186 (265)
                      ..++......+...++.++.|++.||+|||+.+..+.....++.+...+..+  .+..++.+...|++.+...+...+++
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  119 (338)
T COG0477          40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL  119 (338)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4567777777888888899999999999998877777654444444444443  66677777778888888889999999


Q ss_pred             ccccCC-CcchhhHHHHHh-hhhHHHHHHHHHHHHHHhh--cchhHHHHHH
Q 024637          187 PEIYPT-PARTTGFGVASS-LGKVGGMVCPLVAVGLVTS--CHLRLAVILF  233 (265)
Q Consensus       187 ~e~~p~-~~r~~~~g~~~~-~~~~g~~~~~~i~~~l~~~--~~~~~~~~~~  233 (265)
                      .|.+|. +.|+...+.... ...+|..++|.+.+.+...  .+|+..+...
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (338)
T COG0477         120 SEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLA  170 (338)
T ss_pred             HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            999998 678888888887 4668888888777766654  3555533333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.54  E-value=6e-06  Score=71.25  Aligned_cols=153  Identities=14%  Similarity=0.127  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSM  141 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  141 (265)
                      |.+...+++.+...+.+|+...+.|......+..|       ..+....++.....+++..++.++.|.+..+++|-|..
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d-------~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~  382 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSD-------PISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQ  382 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-------CcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHH
Confidence            34555556666677778888777777764443111       11112456666777788888999999999988865554


Q ss_pred             -HHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHH
Q 024637          142 -VLMFVSACIFLLPLVF--HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAV  218 (265)
Q Consensus       142 -~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~  218 (265)
                       +++.+++.+++-+++.  .++....+...++.+++.|....+....++-..|.+.-|++.|+..++..+|+.+|..+..
T Consensus       383 li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  383 LIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence             4565555544333333  3444455677788889998888888888888899999999999999999999999988876


Q ss_pred             HHH
Q 024637          219 GLV  221 (265)
Q Consensus       219 ~l~  221 (265)
                      .+.
T Consensus       463 ~I~  465 (599)
T PF06609_consen  463 AIF  465 (599)
T ss_pred             HHH
Confidence            554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.53  E-value=1.4e-06  Score=76.72  Aligned_cols=160  Identities=10%  Similarity=0.083  Sum_probs=106.8

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHh-hhhHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASL-AELPGLILSA  129 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g  129 (265)
                      .++.++++   +.++...+..+.....++++..|+|.|+++..          +.+..++++......+ +.+++.+++|
T Consensus       322 ~~~~Ll~n---~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~----------g~s~~~ag~l~~~~~i~~~~vG~~l~G  388 (633)
T TIGR00805       322 IIKRLLCN---PIYMLVILAQVIDSLAFNGYITFLPKYLENQY----------GISSAEANFLIGVVNLPAAGLGYLIGG  388 (633)
T ss_pred             HHHHHHcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCcHHHHHHHhhhhhhhHHHHHHhhhh
Confidence            34455543   34455555566667778888889999997655          5777777777766555 5678999999


Q ss_pred             HHHhhhc--hHHHHHHHHHHHHHHHHHHh------------------------------h-------cc-----------
Q 024637          130 IIVDKIG--RKLSMVLMFVSACIFLLPLV------------------------------F-------HQ-----------  159 (265)
Q Consensus       130 ~l~dr~g--rr~~~~~~~~~~~~~~~~~~------------------------------~-------~~-----------  159 (265)
                      +++||++  .|+.+.++.++..++.+...                              .       ..           
T Consensus       389 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~  468 (633)
T TIGR00805       389 FIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNG  468 (633)
T ss_pred             heeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCC
Confidence            9999987  45666666555555433211                              0       00           


Q ss_pred             -----------------------------------------------h-hHHHHHHHHHHHHHHhhhhhhhhhhcccccC
Q 024637          160 -----------------------------------------------S-AVVTTLLLFGVRMCVTGTITVATIYAPEIYP  191 (265)
Q Consensus       160 -----------------------------------------------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p  191 (265)
                                                                     + ...+++..++..+..+....+....+-..+|
T Consensus       469 ~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~  548 (633)
T TIGR00805       469 LAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVN  548 (633)
T ss_pred             CEEECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccC
Confidence                                                           0 1112222233333333344555666677899


Q ss_pred             CCcchhhHHHHHhhhh-HHHHHHHHHHHHHHhh
Q 024637          192 TPARTTGFGVASSLGK-VGGMVCPLVAVGLVTS  223 (265)
Q Consensus       192 ~~~r~~~~g~~~~~~~-~g~~~~~~i~~~l~~~  223 (265)
                      +++|+.+.|+...+.+ +|.+-+|++.|++.|.
T Consensus       549 ~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~  581 (633)
T TIGR00805       549 PEEKSLAIGLQWLCMRVFATIPAPILFGLLIDV  581 (633)
T ss_pred             cccchHHhhHHHHHHHHhcCCChhHHHhhhhhc
Confidence            9999999999999988 7889999999999974

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.50  E-value=2.9e-05  Score=55.33  Aligned_cols=110  Identities=14%  Similarity=0.065  Sum_probs=89.0

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 024637          111 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIY  190 (265)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  190 (265)
                      .....+......+++++.+.+.+++|.|+.++++.+...+...... .++.+.++....+.|++.+..++..-.++.+..
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-YPNSYTLYPASALLGFGAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence            4445555566678888899999999999999999988886665543 455677888889999999999999999999999


Q ss_pred             CCCcchhhHHHHHhhhhHHHHHHHHHHHHHH
Q 024637          191 PTPARTTGFGVASSLGKVGGMVCPLVAVGLV  221 (265)
Q Consensus       191 p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~  221 (265)
                      .++.|++..++...+...+.++|.++.-.+.
T Consensus       119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  119 TEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888888777776665443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.46  E-value=6e-05  Score=63.66  Aligned_cols=152  Identities=9%  Similarity=0.031  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHH-HHHHHHHHhhhchH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPG-LILSAIIVDKIGRK  138 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~grr  138 (265)
                      .++.++.+.+..|+..+.|+..-..-..+.....          +.+.+...++.+...+...+. .++.+++++|++|+
T Consensus         5 E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~----------~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~   74 (472)
T TIGR00769         5 ELKKFLPLFLMFFCILFNYTILRDTKDTLVVTAK----------GSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKE   74 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhheeeccc----------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            3456666666666666666655433333221100          122245566666555555555 78899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhc----c---------------------------hhHHHHHHHHHHHHHHhhhhh-hhhhhc
Q 024637          139 LSMVLMFVSACIFLLPLVFH----Q---------------------------SAVVTTLLLFGVRMCVTGTIT-VATIYA  186 (265)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~----~---------------------------~~~~~~~~~~~~g~~~~~~~~-~~~~~~  186 (265)
                      +++.+.........+++.+.    .                           +.|...+..+...+......+ +.|+++
T Consensus        75 ~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fa  154 (472)
T TIGR00769        75 ALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFA  154 (472)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98877665555544443331    0                           122222333344444445555 889999


Q ss_pred             ccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHH
Q 024637          187 PEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLV  221 (265)
Q Consensus       187 ~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~  221 (265)
                      +|.+..++-.+-+++....+++|..+++.+..++.
T Consensus       155 ndi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       155 NQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.41  E-value=4.8e-08  Score=83.86  Aligned_cols=152  Identities=16%  Similarity=0.161  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHH-hhhhHHHHHHHHHHhhhc--hH
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIAS-LAELPGLILSAIIVDKIG--RK  138 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g--rr  138 (265)
                      +.++...+..........++..|.|+|.+.+.          +.++..+.++..+.. .+..+|.+++|++..|+.  .|
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF----------~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~  374 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQF----------GLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSAR  374 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHH
Confidence            44555555566667777888999999998776          566666665554443 466788999999999874  44


Q ss_pred             HHHHHHHHHHHHHHHH---Hhh--cc-------------------------------------------------hhHHH
Q 024637          139 LSMVLMFVSACIFLLP---LVF--HQ-------------------------------------------------SAVVT  164 (265)
Q Consensus       139 ~~~~~~~~~~~~~~~~---~~~--~~-------------------------------------------------~~~~~  164 (265)
                      ..+....+...++.+.   ..+  .+                                                 ....+
T Consensus       375 ~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~F  454 (539)
T PF03137_consen  375 GAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPF  454 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHH
Confidence            4444443333333322   111  00                                                 01122


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhh-HHHHHHHHHHHHHHhh
Q 024637          165 TLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGK-VGGMVCPLVAVGLVTS  223 (265)
Q Consensus       165 ~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~g~~~~~~i~~~l~~~  223 (265)
                      ++..++..+..+....+....+-..+|+++|+.+.|+...+.+ +|.+-+|+++|.+.|.
T Consensus       455 l~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  455 LILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            2233333334444445555666677899999999999998888 7889999999999886

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.37  E-value=5.9e-06  Score=51.40  Aligned_cols=67  Identities=12%  Similarity=0.035  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHH
Q 024637           71 FFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSA  148 (265)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~  148 (265)
                      ++........+..|.|.+.++.           +.+..+++....+..+..+++.+++|+++||+++++..+....++
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~~~-----------Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLKQL-----------GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            3344444555667788888654           488999999999999999999999999999999998877665543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.35  E-value=4.8e-05  Score=63.45  Aligned_cols=153  Identities=15%  Similarity=0.092  Sum_probs=99.3

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHH
Q 024637           49 FSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILS  128 (265)
Q Consensus        49 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (265)
                      ...|+..++.+.+...+.+.++++. ..   ++......|+...           +.++..++..-.+..+.++.+.++.
T Consensus       249 ~~~w~~Y~~q~vflas~alalLY~T-VL---sf~~lmt~yl~~~-----------G~s~~~igi~R~~gav~Gl~gT~~~  313 (432)
T PF06963_consen  249 IRGWRTYFRQPVFLASFALALLYFT-VL---SFGGLMTAYLKSQ-----------GYSPSVIGIFRGLGAVFGLLGTWVY  313 (432)
T ss_pred             hccHHHHHhCHHHHHHHHHHHHHHH-Hh---cCcHHHHHHHHHC-----------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666655444444444444443 11   2222344444333           4788888889999999999999999


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHh---h-cc------hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhh
Q 024637          129 AIIVDKIGRKLSMVLMFVSACIFLLPLV---F-HQ------SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTG  198 (265)
Q Consensus       129 g~l~dr~grr~~~~~~~~~~~~~~~~~~---~-~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~  198 (265)
                      .++.+|+|..+.=+++......+..+..   + ..      +...++....+.-+|.=+.--....++.|..|+++||+.
T Consensus       314 p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v  393 (432)
T PF06963_consen  314 PWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAV  393 (432)
T ss_pred             HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHH
Confidence            9999999988877776665444433222   2 22      122333444455555555556778899999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHH
Q 024637          199 FGVASSLGKVGGMVCPLV  216 (265)
Q Consensus       199 ~g~~~~~~~~g~~~~~~i  216 (265)
                      .|.-+...++...+.-.+
T Consensus       394 ~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  394 SGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999988766554444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.34  E-value=8.7e-06  Score=66.27  Aligned_cols=112  Identities=13%  Similarity=0.039  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHhhhc-----hHHHHHH-HHHHHHHHHHHHhh-----cc-------hhH----HHHHHHHHHHHHHhhhh
Q 024637          122 LPGLILSAIIVDKIG-----RKLSMVL-MFVSACIFLLPLVF-----HQ-------SAV----VTTLLLFGVRMCVTGTI  179 (265)
Q Consensus       122 ~~~~~~~g~l~dr~g-----rr~~~~~-~~~~~~~~~~~~~~-----~~-------~~~----~~~~~~~~~g~~~~~~~  179 (265)
                      .+.++.+|+.+|+.+     ||..+++ +.+....+...+.+     ..       +.+    .......+.|++.+...
T Consensus        28 ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~  107 (403)
T PF03209_consen   28 APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASG  107 (403)
T ss_pred             HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhH
Confidence            356889999999988     7766554 44444443333332     22       222    23344566788888888


Q ss_pred             hhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHH
Q 024637          180 TVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF  233 (265)
Q Consensus       180 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  233 (265)
                      +...++++|..|++.|+.+.++.+...-+|.+++..+.+.+++.+......-+.
T Consensus       108 T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~  161 (403)
T PF03209_consen  108 TSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI  161 (403)
T ss_pred             HHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence            999999999999999999999999999999999999999999887654443333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.27  E-value=4.3e-08  Score=75.37  Aligned_cols=120  Identities=13%  Similarity=0.094  Sum_probs=96.9

Q ss_pred             CCCchHHHHHHHHHhhhhHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHhhhhh
Q 024637          105 SKDNSLYVDVFIASLAELPGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVF---HQSAVVTTLLLFGVRMCVTGTIT  180 (265)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~  180 (265)
                      .+..+..++.++++..+++-++++|++.|| +|-|....+-+....++-+.++.   .+..|.+...++++|+|.-....
T Consensus        76 i~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAV  155 (459)
T KOG4686|consen   76 IEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAV  155 (459)
T ss_pred             cceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhh
Confidence            445566778888999999999999999997 67776655555555555555443   67789999999999988777777


Q ss_pred             hhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 024637          181 VATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC  224 (265)
Q Consensus       181 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~  224 (265)
                      ....+..-+|..++-+.++|+..+..++|+.+--.+.+++.+..
T Consensus       156 aQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  156 AQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             hhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence            78899999999999999999999999999988777777777654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.23  E-value=1.3e-07  Score=81.18  Aligned_cols=147  Identities=10%  Similarity=0.037  Sum_probs=2.7

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcc------------------------
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ------------------------  159 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~------------------------  159 (265)
                      +.++.+++++.+.+-++..+..++..++.+|..|-+.+-++.++++++.+++...+                        
T Consensus        34 ~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~  113 (539)
T PF03137_consen   34 GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNL  113 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccc
Confidence            48889999999999999999999999999998777888888888888887665410                        


Q ss_pred             --------------------------hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHH
Q 024637          160 --------------------------SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVC  213 (265)
Q Consensus       160 --------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~  213 (265)
                                                ....+++..++.|+|....+++..+|+-|..+++.-+...|+.+....+|-++|
T Consensus       114 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~G  193 (539)
T PF03137_consen  114 CDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALG  193 (539)
T ss_dssp             --------------------------------------SSS---------------------------------------
T ss_pred             ccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHH
Confidence                                      023455667888889899999999999999999999999999999988888888


Q ss_pred             HHHHHHHHhhc----------------------chhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          214 PLVAVGLVTSC----------------------HLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       214 ~~i~~~l~~~~----------------------~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      -++++.++..+                      .||..|++.+++.++.++..+.++++
T Consensus       194 f~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~  252 (539)
T PF03137_consen  194 FLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK  252 (539)
T ss_dssp             -----------------------------------------------------------
T ss_pred             HHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            88877665321                      25666777777777777777777643

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.17  E-value=1.3e-06  Score=71.78  Aligned_cols=119  Identities=16%  Similarity=0.160  Sum_probs=73.4

Q ss_pred             CCchHHHHHHHHHhhhhHHHHHHHHHHhhhchH----HHHHHHHH-------HHHHHHHHHhh--cchhHHHHHHHHHHH
Q 024637          106 KDNSLYVDVFIASLAELPGLILSAIIVDKIGRK----LSMVLMFV-------SACIFLLPLVF--HQSAVVTTLLLFGVR  172 (265)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr----~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~g  172 (265)
                      +.....+...+...++.+|.+++|.++||+.|+    ....+..+       ++..+.++...  ..+.+..+++.++.-
T Consensus       281 ~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~  360 (493)
T KOG1330|consen  281 DHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGE  360 (493)
T ss_pred             ccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            334445667777788899999999999995332    11112111       11122222221  222333333333222


Q ss_pred             HHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhh-HHHHHHHHHHHHHHhhc
Q 024637          173 MCVTGTITVATIYAPEIYPTPARTTGFGVASSLGK-VGGMVCPLVAVGLVTSC  224 (265)
Q Consensus       173 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~g~~~~~~i~~~l~~~~  224 (265)
                      ......+++...+..|..|++.|.+++++...+.. +|.+-+|.+.|.+.++.
T Consensus       361 ~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  361 TISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             HHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence            23334456777788899999999999999998877 66777787999998764

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.16  E-value=1.9e-05  Score=69.15  Aligned_cols=148  Identities=12%  Similarity=0.070  Sum_probs=116.9

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcc------------------------
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ------------------------  159 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~------------------------  159 (265)
                      ..++.+.+++...+-++..+...+..+..-|.-|-+.+-++.++++++.++..+.+                        
T Consensus       128 ~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~  207 (735)
T KOG3626|consen  128 KISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSL  207 (735)
T ss_pred             CCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCcccc
Confidence            46667778877777888888888899999998888888889999988888766510                        


Q ss_pred             ---------------------------hhH-HHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHH
Q 024637          160 ---------------------------SAV-VTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGM  211 (265)
Q Consensus       160 ---------------------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~  211 (265)
                                                 .++ .+++..++.|+|....+++..+|+-|...++.-....|+.+++..+|-+
T Consensus       208 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPa  287 (735)
T KOG3626|consen  208 SFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPA  287 (735)
T ss_pred             chhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhH
Confidence                                       022 3455677888888889999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHhhc-------------------chhHHHHHHHHHHHHHHHHHhcCCccc
Q 024637          212 VCPLVAVGLVTSC-------------------HLRLAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       212 ~~~~i~~~l~~~~-------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      +|=++++++...+                   .||..|++.+.+.++.++..++++++.
T Consensus       288 iGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  288 IGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             HHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence            8888888776421                   266677888888888888888887543

>TIGR01272 gluP glucose/galactose transporter

Probab=98.06  E-value=3.2e-05  Score=62.25  Aligned_cols=86  Identities=17%  Similarity=0.216  Sum_probs=71.8

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh--------------
Q 024637          158 HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS--------------  223 (265)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~--------------  223 (265)
                      ..+++.+++..++.+.|.+...+...++++++.|++.+++.+++.+.+..+|..++|++.+.+...              
T Consensus         7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~   86 (310)
T TIGR01272         7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANA   86 (310)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhH
Confidence            457788899999999999999999999999999999999999999999999999999999988732              


Q ss_pred             --cchhHHHHHHHHHHHHHHHH
Q 024637          224 --CHLRLAVILFEVVFVLAIAS  243 (265)
Q Consensus       224 --~~~~~~~~~~~~~~~i~~~~  243 (265)
                        ..|+.+++..+.+..+..++
T Consensus        87 ~~~~~~~~yl~ia~~~~~~~i~  108 (310)
T TIGR01272        87 EAAKVHTPYLLLAGALAVLAII  108 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence              24667777666555444443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK03612 spermidine synthase; Provisional

Probab=98.02  E-value=0.0017  Score=56.01  Aligned_cols=138  Identities=14%  Similarity=0.042  Sum_probs=75.3

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHH-H-HHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHHHh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVL-M-FVSACIFLLPLVFHQ-----SAVVTTLLLFGVRMCVT  176 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~  176 (265)
                      +.+....+.+.+++.++..+|+.+++++.++.-++....- . .++.+++..++....     .....+...++.++..|
T Consensus        46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G  125 (521)
T PRK03612         46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG  125 (521)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666777777778888888777643322222111 1 111111111111111     11122333444556666


Q ss_pred             hhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHH
Q 024637          177 GTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVT-SCHLRLAVILFEVVFVLAIA  242 (265)
Q Consensus       177 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~i~~~  242 (265)
                      +..|....+..+... +.-+...|-.+....+|+++|+++.++++- ..|.....++.+.+.++.++
T Consensus       126 ~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~  191 (521)
T PRK03612        126 MEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL  191 (521)
T ss_pred             HHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            666666555544322 123567788888889999999999887764 66766666565555544443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.99  E-value=0.0001  Score=62.21  Aligned_cols=145  Identities=13%  Similarity=0.118  Sum_probs=99.2

Q ss_pred             CCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh----------cchhHHHHHHHHHHHHH
Q 024637          105 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----------HQSAVVTTLLLFGVRMC  174 (265)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~  174 (265)
                      .++...+....+..++.++|..+......+..-|+++.++.++..+..+.-..          .++.+..+.-.++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            55666666667777777888888877777778888888887777665543221          12223333344555555


Q ss_pred             HhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcch--------hHHHHHHHHHHHHHHHHHhc
Q 024637          175 VTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL--------RLAVILFEVVFVLAIASSLL  246 (265)
Q Consensus       175 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~--------~~~~~~~~~~~~i~~~~~~~  246 (265)
                      ....+-+...+++|+.|+..-|+.+++..++.|+|..++..++..+.+..+.        +...++..++.++...+..+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            5566677788899999999999999999999999999999999988876652        22233334444444444545


Q ss_pred             CCc
Q 024637          247 FPF  249 (265)
Q Consensus       247 ~~~  249 (265)
                      ++|
T Consensus       412 Lp~  414 (433)
T PF03092_consen  412 LPP  414 (433)
T ss_pred             cCC
Confidence            554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.98  E-value=5.9e-05  Score=63.65  Aligned_cols=119  Identities=14%  Similarity=0.158  Sum_probs=99.3

Q ss_pred             CCCCchHHHHHHHHHhhhhHHHHHHH-HHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhh
Q 024637          104 KSKDNSLYVDVFIASLAELPGLILSA-IIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVA  182 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  182 (265)
                      +.+..+.+...+..+....++.++.. .+...+|-|++...|.+...+..+...+.+..|..+....+.. ......+..
T Consensus       273 ~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~-~~~~~~pa~  351 (463)
T KOG2816|consen  273 GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVA-LAGIVFPAI  351 (463)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHH-hhcchhHHH
Confidence            46667777777777777788877665 7788899999999999999999999999998888777766554 445667889


Q ss_pred             hhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh
Q 024637          183 TIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS  223 (265)
Q Consensus       183 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~  223 (265)
                      .+.++-..+++.+|.++++...+..+.++++|.+.+.+...
T Consensus       352 ~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  352 RAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             HhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999887643

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.94  E-value=7.1e-05  Score=61.91  Aligned_cols=110  Identities=13%  Similarity=0.029  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHhh---cch------hHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC---cchhhHHHHHhhh
Q 024637          139 LSMVLMFVSACIFLLPLVF---HQS------AVVTTLLLFGVRMCVTGTITVATIYAPEIYPTP---ARTTGFGVASSLG  206 (265)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~  206 (265)
                      ++++++.++..++.+++..   ...      .+.+++...+.++|.|+.-+...++..|.++++   .|...+.+.+...
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            4667777888887777443   111      245777777889999999999999999999875   4677888889999


Q ss_pred             hHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          207 KVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       207 ~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      ++|+.+++.+.+++.+..+|...|.+.++..+++.+..+.-.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~  123 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR  123 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999888888887777666554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.91  E-value=0.0019  Score=53.40  Aligned_cols=128  Identities=18%  Similarity=0.148  Sum_probs=92.4

Q ss_pred             hhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHH
Q 024637          121 ELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFG  200 (265)
Q Consensus       121 ~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g  200 (265)
                      .++.-++...+.|.++.|++++++.+...+...++.+.++...+-+.-+..|++.+. -.+.++++=...|+++-.++.+
T Consensus        54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts  132 (412)
T PF01770_consen   54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTS  132 (412)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHH
Confidence            344566778899999999999999999999999988999998888888888877655 4667778877888887777787


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHhcCCc
Q 024637          201 VASSLGKVGGMVCPLVAVGLVTS--CHLRLAVILFEVVFVLAIASSLLFPF  249 (265)
Q Consensus       201 ~~~~~~~~g~~~~~~i~~~l~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~  249 (265)
                      ......-+|..++..++-.+...  ..+.....+......++.++.+++++
T Consensus       133 ~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~  183 (412)
T PF01770_consen  133 YTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM  183 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77777777777777666655543  23333333333444455555566653

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.91  E-value=0.0017  Score=55.54  Aligned_cols=111  Identities=14%  Similarity=-0.031  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhch--H----H-HHHHHHHHHHHHHHHHhh----c-----chhHHHHHHHHHHHH
Q 024637          110 LYVDVFIASLAELPGLILSAIIVDKIGR--K----L-SMVLMFVSACIFLLPLVF----H-----QSAVVTTLLLFGVRM  173 (265)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r----~-~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~g~  173 (265)
                      ..+..++..+.-++.+++.+++-.|.+|  |    + =+.++.++.+++.+.+..    .     .+.++++...++..+
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            4556666666666777777777666532  2    1 156777777777766543    1     245667777777888


Q ss_pred             HHhhhhhhhhhhcccccCCCcchhhHHHHHhhh-hHHHHHHHHHHHHH
Q 024637          174 CVTGTITVATIYAPEIYPTPARTTGFGVASSLG-KVGGMVCPLVAVGL  220 (265)
Q Consensus       174 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~~g~~~~~~i~~~l  220 (265)
                      +--...|+..++++++.|++.||..+|...... .+|..++..+.+..
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            877788999999999999999999999986543 46666655555543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.91  E-value=0.00011  Score=60.41  Aligned_cols=110  Identities=18%  Similarity=0.170  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHHHHhhhhhhhhhh
Q 024637          109 SLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---FHQSAVVTTLLLFGVRMCVTGTITVATIY  185 (265)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  185 (265)
                      .-.+....+.+|.++++--..++  |+.+-+++.+..++..+.++.-.   +.++.|..++..+..|+..|..+...+..
T Consensus       282 ~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~  359 (402)
T PF02487_consen  282 QYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR  359 (402)
T ss_pred             HHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34455666666655553322111  33232332222222222222222   25677888888888999999999999999


Q ss_pred             cccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHH
Q 024637          186 APEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGL  220 (265)
Q Consensus       186 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l  220 (265)
                      +.|-.|+++|-.++|.....-.+|..++.+++-++
T Consensus       360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999988888888887776544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.85  E-value=0.00024  Score=44.74  Aligned_cols=78  Identities=8%  Similarity=-0.030  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 024637           75 VFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP  154 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  154 (265)
                      ....+.+...+|...++.           +.+..+.+++.+...++.++|.+...++.++..+++.+..+.+...+..+.
T Consensus         5 GigRFayTplLP~M~~~~-----------~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~   73 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQADG-----------GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAA   73 (85)
T ss_pred             hhHHHHHHhHhHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            455677777889887655           488899999999999999999999999999988899999999999999998


Q ss_pred             HhhcchhHH
Q 024637          155 LVFHQSAVV  163 (265)
Q Consensus       155 ~~~~~~~~~  163 (265)
                      +.+..+.+.
T Consensus        74 ma~~~~~~~   82 (85)
T PF06779_consen   74 MALTHSFWL   82 (85)
T ss_pred             HHHHhchHH
Confidence            888776554

Note that many members are hypothetical proteins.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.0011  Score=55.67  Aligned_cols=109  Identities=16%  Similarity=0.141  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHhh-----c-------------chhHHHHHHH
Q 024637          110 LYVDVFIASLAELPGLILSAIIVDK---IGRKLSMVLMFVSACIFLLPLVF-----H-------------QSAVVTTLLL  168 (265)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~g~l~dr---~grr~~~~~~~~~~~~~~~~~~~-----~-------------~~~~~~~~~~  168 (265)
                      ..+.....+++..+++...+.+.+|   +||++.+.++..+..+..++...     +             ++.....+..
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence            4445556667788888888888765   68999998888888887776654     1             1244667777


Q ss_pred             HHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          169 FGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      ++.|++-.......+.++...+ ++.|..+.++.-.-..++..++-+..+.
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            8889998888899999999999 4568888888887777777666666553

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.62  E-value=0.007  Score=50.10  Aligned_cols=132  Identities=14%  Similarity=0.124  Sum_probs=88.1

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 024637          111 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIY  190 (265)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  190 (265)
                      +.......+..++..++..+..+|+.-+.-..+..+++.+++++.+++++.+.-++..++.+++.|..-.....+.. .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            33444455667777888999999987555566677788888888888888888888888888888877666666544 56


Q ss_pred             CCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHhcCC
Q 024637          191 PTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH--LRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       191 p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      |+.    ..+-..+....++.+|+...-.+.+ .+  .+..++....+.++..+..++..
T Consensus       141 ~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L  195 (402)
T PF02487_consen  141 GKS----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLL  195 (402)
T ss_pred             Ccc----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            542    2333444445677777777766655 44  35566666666655554444444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.60  E-value=0.0013  Score=53.95  Aligned_cols=143  Identities=15%  Similarity=0.077  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH-HHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHhhhhhhhhh
Q 024637          109 SLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV-LMFVSACIFLLPLVFHQ---SAVVTTLLLFGVRMCVTGTITVATI  184 (265)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~  184 (265)
                      ..+...++..+...+-+++.|.++|+.|+||..+ ....+..++.+.+.+.+   ..+..+++..+..++.........+
T Consensus        59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds  138 (438)
T COG2270          59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS  138 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh
Confidence            3455566666777788899999999999666555 44444555555555533   3444555566777777788888899


Q ss_pred             hcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHH------------------hhcchhHHHHHHHHHHHHHHHHHhc
Q 024637          185 YAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLV------------------TSCHLRLAVILFEVVFVLAIASSLL  246 (265)
Q Consensus       185 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~------------------~~~~~~~~~~~~~~~~~i~~~~~~~  246 (265)
                      +..++.+++.-+...++....+.+|+.+.-++.-...                  +....+..+.+.++..++..+-.++
T Consensus       139 ~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~  218 (438)
T COG2270         139 MLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL  218 (438)
T ss_pred             HhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence            9999999988888888888888888866544431111                  1123456666777776666666655


Q ss_pred             CCccc
Q 024637          247 FPFET  251 (265)
Q Consensus       247 ~~~~~  251 (265)
                      ..++.
T Consensus       219 ~v~~~  223 (438)
T COG2270         219 NVHDA  223 (438)
T ss_pred             ccccc
Confidence            55443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.58  E-value=0.00074  Score=56.91  Aligned_cols=108  Identities=10%  Similarity=0.065  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhchH-HHHHHHHHHHHHH---HHHHhh---------cchhHHHHHHHHHHHHHHh
Q 024637          110 LYVDVFIASLAELPGLILSAIIVDKIGRK-LSMVLMFVSACIF---LLPLVF---------HQSAVVTTLLLFGVRMCVT  176 (265)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr-~~~~~~~~~~~~~---~~~~~~---------~~~~~~~~~~~~~~g~~~~  176 (265)
                      ......+++++..+|+.+..+.. .-++| +.+.+..+.=.+.   .+++..         -++.+..++..++.|+..|
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            34566677788888887554321 11222 1222222222222   122211         1356677778889999999


Q ss_pred             hhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHH
Q 024637          177 GTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAV  218 (265)
Q Consensus       177 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~  218 (265)
                      -..+....+.++..++++|-.+..+...+..+|-.+|..+.-
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998999999999999999988888888888888888877643

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.55  E-value=0.00013  Score=60.24  Aligned_cols=146  Identities=12%  Similarity=0.061  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhh----hch
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDK----IGR  137 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~gr  137 (265)
                      +.++......++..+.+..-..|++.|....+           .+....+....+.-+.+++..++.|..+||    +||
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lG-----------vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR  100 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLG-----------VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR  100 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcC-----------CCcccccccccccccccceeccccccccccccccccc
Confidence            44444555555555555555556666665554           444455555555567778888999999995    788


Q ss_pred             HHHHHHH-HHHHHHHHHHHhhcch-----------------hHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchh-h
Q 024637          138 KLSMVLM-FVSACIFLLPLVFHQS-----------------AVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTT-G  198 (265)
Q Consensus       138 r~~~~~~-~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~-~  198 (265)
                      ||.++.. .+...++.+++.+..+                 ....++...+.-+.....+++.-++..|+.....+.+ +
T Consensus       101 RRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~A  180 (498)
T KOG0637|consen  101 RRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRA  180 (498)
T ss_pred             ccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhcc
Confidence            8876654 4445555555554211                 1223333445556667788899999999998777777 8


Q ss_pred             HHHHHhhhhHHHHHHHHHHH
Q 024637          199 FGVASSLGKVGGMVCPLVAV  218 (265)
Q Consensus       199 ~g~~~~~~~~g~~~~~~i~~  218 (265)
                      .+....+..+|+.+|-.+++
T Consensus       181 ns~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  181 NSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             chhHHHHHHhcceeeeeccc
Confidence            88888888888877766665

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.52  E-value=0.0053  Score=53.49  Aligned_cols=180  Identities=13%  Similarity=0.076  Sum_probs=113.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh-
Q 024637           57 SRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI-  135 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-  135 (265)
                      +...|+.....+........+++++..-+-.|+....          +.+...+.-......-......+++++++|.+ 
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~----------~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~  101 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLEL----------HASGGGAANNVNAFGGTQFLLPLLGAFLADSFL  101 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHh----------ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            3444555544544455566666655433333332221          23334444445555555567778999999975 


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhc-------c---------------hh---HHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 024637          136 GRKLSMVLMFVSACIFLLPLVFH-------Q---------------SA---VVTTLLLFGVRMCVTGTITVATIYAPEIY  190 (265)
Q Consensus       136 grr~~~~~~~~~~~~~~~~~~~~-------~---------------~~---~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  190 (265)
                      ||-+++.++.++..++++++...       +               +.   ..++....+..+|.|+.-+...++-+|-+
T Consensus       102 gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQf  181 (571)
T KOG1237|consen  102 GRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQF  181 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhccccc
Confidence            89999998888887776544430       0               11   12333344455577777888899999888


Q ss_pred             CC----C--cchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhc
Q 024637          191 PT----P--ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL  246 (265)
Q Consensus       191 p~----~--~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  246 (265)
                      +.    +  .+..-+.+.+...++|..++..+..++-+..+|...+-+..+...++.++.+.
T Consensus       182 d~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  182 DELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             CccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence            82    2  23366677777778898888888888878888888777777766666555443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.40  E-value=0.0051  Score=50.96  Aligned_cols=97  Identities=12%  Similarity=0.009  Sum_probs=68.4

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHH--HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhccc
Q 024637          111 YVDVFIASLAELPGLILSAIIVDKIGRKLSM--VLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPE  188 (265)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e  188 (265)
                      +..-.+..+.+.++++..|++..++.+..-+  .+..++.+.+.+++.+.++.|..++..++++.......++...-++.
T Consensus       288 G~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~  367 (412)
T PF01770_consen  288 GAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAK  367 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455566677888899987777664433  34455556667777778899988888888877777777777777777


Q ss_pred             ccCCCcchhhHHHHHhhhh
Q 024637          189 IYPTPARTTGFGVASSLGK  207 (265)
Q Consensus       189 ~~p~~~r~~~~g~~~~~~~  207 (265)
                      ....+.-|..+|+.+++.-
T Consensus       368 ~l~~e~yaLVFGiNtf~Al  386 (412)
T PF01770_consen  368 NLSEERYALVFGINTFVAL  386 (412)
T ss_pred             hccccceeeeeeeHHHHHH
Confidence            7777777777777766544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.38  E-value=0.021  Score=48.91  Aligned_cols=153  Identities=14%  Similarity=0.130  Sum_probs=89.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHh-hhhHHHHHHHHHHhhhc
Q 024637           58 RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASL-AELPGLILSAIIVDKIG  136 (265)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g  136 (265)
                      +..++.++.+.++.|+..+.|...-..-..+...            ...++.+..+=....+ +.++..++..+++++++
T Consensus        20 ~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt------------~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s   87 (491)
T PF03219_consen   20 RSELKKFLPLALMFFFILFNYTILRDLKDTLVVT------------AQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLS   87 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEe------------cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3455666666666665555444432222211110            1122333333332222 34555677889999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh---------cc----------------------hhHHHHHHHHHHHHHHhhhhh-hhhh
Q 024637          137 RKLSMVLMFVSACIFLLPLVF---------HQ----------------------SAVVTTLLLFGVRMCVTGTIT-VATI  184 (265)
Q Consensus       137 rr~~~~~~~~~~~~~~~~~~~---------~~----------------------~~~~~~~~~~~~g~~~~~~~~-~~~~  184 (265)
                      |.+++-+..........+.++         .+                      +.|...+..+..-+......+ ..|.
T Consensus        88 ~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~  167 (491)
T PF03219_consen   88 REKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWG  167 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999877655544444333332         11                      112222222222232233334 5799


Q ss_pred             hcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHh
Q 024637          185 YAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVT  222 (265)
Q Consensus       185 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~  222 (265)
                      +++|.++.++-.+-+++....+++|.+++..+..++.+
T Consensus       168 fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  168 FANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.23  E-value=0.086  Score=44.56  Aligned_cols=154  Identities=15%  Similarity=0.117  Sum_probs=96.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHh-hhhHHHHHHHHHHhhhc
Q 024637           58 RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASL-AELPGLILSAIIVDKIG  136 (265)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g  136 (265)
                      +..++.++.+.++.++..+.++.+-..-..+...            ...+..+..+-+..-+ +.++..++.+++.++..
T Consensus        23 r~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~------------~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt   90 (509)
T COG3202          23 RYELKKFLPLALLFFCILFNYNLLRSLKDSLVVT------------RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILT   90 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhheEee------------cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcC
Confidence            4456666666666666666555543332222211            1233444444444444 55667788899999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh---------cc-----------------------hhHHHHHHHHHHHHHHhhhhh-hhh
Q 024637          137 RKLSMVLMFVSACIFLLPLVF---------HQ-----------------------SAVVTTLLLFGVRMCVTGTIT-VAT  183 (265)
Q Consensus       137 rr~~~~~~~~~~~~~~~~~~~---------~~-----------------------~~~~~~~~~~~~g~~~~~~~~-~~~  183 (265)
                      |.+++-+.+.....+.+++++         .+                       +.|...+...+.-+-.....+ ..+
T Consensus        91 ~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw  170 (509)
T COG3202          91 REKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFW  170 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999887665555544444333         01                       113333333333333333334 678


Q ss_pred             hhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh
Q 024637          184 IYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS  223 (265)
Q Consensus       184 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~  223 (265)
                      ....|.+..++-.+-+++.+..++++..++..+..++..+
T Consensus       171 ~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         171 QFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8999999999999999999999999999999888888763

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.14  E-value=0.001  Score=51.43  Aligned_cols=150  Identities=12%  Similarity=-0.005  Sum_probs=85.2

Q ss_pred             CCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhh
Q 024637          105 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATI  184 (265)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  184 (265)
                      +...+++.+........++...+.|-++||.|||+.-+.-++...++++- -.++.+-++++.+.+.|+..+..++..-+
T Consensus        69 FgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT-KhSpqYkVLmVGR~LGGiaTsLLFSaFEs  147 (454)
T KOG4332|consen   69 FGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT-KHSPQYKVLMVGRVLGGIATSLLFSAFES  147 (454)
T ss_pred             ccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh-hcCCceEEEeehhhhhhHHHHHHHHHHHH
Confidence            44566666666555566677788889999999998755444444444432 12566667888899988888877766655


Q ss_pred             h-ccccc-----CCCcchhhHHHHHhhhh-HHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHHhcCCccccccc
Q 024637          185 Y-APEIY-----PTPARTTGFGVASSLGK-VGGMVCPLVAVGLVTSC--HLRLAVILFEVVFVLAIASSLLFPFETMGRE  255 (265)
Q Consensus       185 ~-~~e~~-----p~~~r~~~~g~~~~~~~-~g~~~~~~i~~~l~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  255 (265)
                      + +.|.-     |.+--...++=...+++ +-++++.+.+-.+.+.+  |...+|-..+++..++..+.+--..|..+++
T Consensus       148 WliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdp  227 (454)
T KOG4332|consen  148 WLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDP  227 (454)
T ss_pred             HHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCCh
Confidence            3 44543     22222222222222333 33344444444445543  5556666555555555555554444555443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.01  Score=49.99  Aligned_cols=113  Identities=12%  Similarity=0.034  Sum_probs=92.1

Q ss_pred             CCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhh
Q 024637          106 KDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIY  185 (265)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  185 (265)
                      ++..-.....+......+.+++.+.+.|++|.|..+.++........+...+.+ .+..++...+.|+|.+..+.-.-.+
T Consensus        48 ~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~y  126 (461)
T KOG3098|consen   48 SAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGY  126 (461)
T ss_pred             CCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheeccccee
Confidence            333434446666677788999999999999999999999988888877766555 5667888899999999989999999


Q ss_pred             cccccCCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 024637          186 APEIYPTPARTTGFGVASSLGKVGGMVCPLVAVG  219 (265)
Q Consensus       186 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~  219 (265)
                      .+|...++.+.+..++...+...+.++|..+...
T Consensus       127 lt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  127 LTSNSTRETIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             hhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            9999999999999999998888777777655443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.01  E-value=0.043  Score=46.36  Aligned_cols=142  Identities=14%  Similarity=-0.046  Sum_probs=92.3

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHhhhchH-------HHHHHHHHHHHHHHHHHhh-----c-----chhHHHHHHHHHH
Q 024637          109 SLYVDVFIASLAELPGLILSAIIVDKIGRK-------LSMVLMFVSACIFLLPLVF-----H-----QSAVVTTLLLFGV  171 (265)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-------~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~  171 (265)
                      ...+..++..+.-++.+++..++..|.+++       .=+-++..+++.+.+++..     .     .+.++.+...++.
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            335666666677777777777777775443       1233455555555444433     1     3467777778888


Q ss_pred             HHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHH------HHhhcchhHHHHHHHHHHHHHHHHHh
Q 024637          172 RMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVG------LVTSCHLRLAVILFEVVFVLAIASSL  245 (265)
Q Consensus       172 g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~------l~~~~~~~~~~~~~~~~~~i~~~~~~  245 (265)
                      .++--...|+..+++..+.|+...+..+++.......|+.++..+.+.      ..+.......|...+....+..+...
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~  484 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL  484 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            888777789999999999999988888888777777777776666552      22333344566666666665555555


Q ss_pred             cCCcc
Q 024637          246 LFPFE  250 (265)
Q Consensus       246 ~~~~~  250 (265)
                      ...|+
T Consensus       485 ~~~~~  489 (498)
T COG3104         485 LLSPK  489 (498)
T ss_pred             HhhHH
Confidence            44443

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.90  E-value=0.00027  Score=56.92  Aligned_cols=104  Identities=15%  Similarity=0.138  Sum_probs=3.7

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhh-hchHHHHHHHHHHHHHH---HHHHh----------hcchhHHHHHHHHHHHHHHhhh
Q 024637          113 DVFIASLAELPGLILSAIIVDK-IGRKLSMVLMFVSACIF---LLPLV----------FHQSAVVTTLLLFGVRMCVTGT  178 (265)
Q Consensus       113 ~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~~~~~~g~~~~~~  178 (265)
                      .+.+++++..+|+.+.++..=+ ..+|.+.. ..+.-.+.   .+++.          ..++.++.++..++.++..|-.
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            4557788999999988764311 13443333 22222211   11110          1234456677788889999988


Q ss_pred             hhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHH
Q 024637          179 ITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVA  217 (265)
Q Consensus       179 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~  217 (265)
                      .+....+.++..++++|..+..+...+-.+|-.+|..+.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             -HHHH----------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999988888888777777777777776664

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.80  E-value=0.0014  Score=55.25  Aligned_cols=73  Identities=18%  Similarity=0.166  Sum_probs=55.2

Q ss_pred             HHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 024637          171 VRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIAS  243 (265)
Q Consensus       171 ~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~  243 (265)
                      .|.+.-.......+.-+|...++.+++..|+......++..++|++...+....|.+....+.++..++...+
T Consensus       398 ~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l  470 (488)
T KOG2325|consen  398 FGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAAL  470 (488)
T ss_pred             eccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHH
Confidence            3333333345677888899999999999999999999999999999998888888876666655555444333

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.76  E-value=0.28  Score=41.45  Aligned_cols=136  Identities=12%  Similarity=0.004  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHH----H---HHHhh-cc----hhHHHHHHHH---HHH-H
Q 024637          110 LYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIF----L---LPLVF-HQ----SAVVTTLLLF---GVR-M  173 (265)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~----~---~~~~~-~~----~~~~~~~~~~---~~g-~  173 (265)
                      .........+..++.++..|...||..|.++...+.+..-++    +   +.+.. ..    +.+....+..   +.+ +
T Consensus        40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i  119 (432)
T PF06963_consen   40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAI  119 (432)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH
Confidence            444555556777788888999999999988766554432221    1   11111 11    1122211111   111 1


Q ss_pred             HHhhhhhhhhhhcccccCC--CcchhhHHHHHhhh----hHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 024637          174 CVTGTITVATIYAPEIYPT--PARTTGFGVASSLG----KVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSL  245 (265)
Q Consensus       174 ~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~----~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  245 (265)
                      ..-.......+.--|+.+.  +.+.....-.|...    -+..+++|++.|.+.+..+......+.++..++...+=+
T Consensus       120 ~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy  197 (432)
T PF06963_consen  120 ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEY  197 (432)
T ss_pred             HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence            1111112222222233221  11222223333333    368999999999999988887777777777766665533

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.75  E-value=0.013  Score=49.53  Aligned_cols=96  Identities=9%  Similarity=0.003  Sum_probs=70.8

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchH--HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC
Q 024637          115 FIASLAELPGLILSAIIVDKIGRK--LSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPT  192 (265)
Q Consensus       115 ~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~  192 (265)
                      .+..+.+.+.++..|++-.++.+-  ..+.+..++.+...+++.+.++.|..++..++++.......++...-++.....
T Consensus       305 A~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~  384 (511)
T TIGR00806       305 AASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSK  384 (511)
T ss_pred             HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            333455667788889887766543  334444555566667777789999999999998888888888888888888888


Q ss_pred             CcchhhHHHHHhhhhHHH
Q 024637          193 PARTTGFGVASSLGKVGG  210 (265)
Q Consensus       193 ~~r~~~~g~~~~~~~~g~  210 (265)
                      +.-|..+|+.+++.-+-.
T Consensus       385 ~~~aLvFGiNtfvAl~LQ  402 (511)
T TIGR00806       385 ELCALVFGINTFVATALK  402 (511)
T ss_pred             cceEEEEecHHHHHHHHH
Confidence            877888888877765433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.74  E-value=0.021  Score=46.63  Aligned_cols=143  Identities=20%  Similarity=0.146  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHh-----h
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVD-----K  134 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r  134 (265)
                      .++.++.+.+.+..+..- ++....+|.+++..           +.+-++.+.....+.  -..--+++.++.|     |
T Consensus        29 d~~~illLl~LYllQGiP-~GL~~~iP~lL~ak-----------~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~   94 (510)
T KOG3574|consen   29 DRSSILLLLFLYLLQGIP-LGLIGAIPLLLQAK-----------GVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKR   94 (510)
T ss_pred             hhhhHHHHHHHHHHcCCc-hhHhhhhHHHhcCC-----------Ccchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHh
Confidence            344555555555554443 34444778887533           244344333322211  1223467888888     9


Q ss_pred             hchHHHHHH-HHHHHHHHHHHHhhc-----------chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHH
Q 024637          135 IGRKLSMVL-MFVSACIFLLPLVFH-----------QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVA  202 (265)
Q Consensus       135 ~grr~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~  202 (265)
                      +||||..++ +..+.+..+..+...           ++........++.-+....--...-.+.-.+..++.-|-+....
T Consensus        95 ~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q  174 (510)
T KOG3574|consen   95 FGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQ  174 (510)
T ss_pred             hccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHH
Confidence            999986554 334444444444431           11111111223333333322345556666667776666655444


Q ss_pred             HhhhhHHHHHHHHH
Q 024637          203 SSLGKVGGMVCPLV  216 (265)
Q Consensus       203 ~~~~~~g~~~~~~i  216 (265)
                      ....++|.+++-.+
T Consensus       175 ~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  175 SVGQTAGYFLGNVV  188 (510)
T ss_pred             HHHHhhhHHhhcce
Confidence            44444555555443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.50  E-value=0.13  Score=43.76  Aligned_cols=56  Identities=13%  Similarity=0.054  Sum_probs=45.5

Q ss_pred             HHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh
Q 024637          168 LFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS  223 (265)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~  223 (265)
                      ..+..+.....+....++-+.+.+|..-|+.+.+.+++.|+|+---..+.-++.|.
T Consensus       412 ~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  412 HVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence            44555555666677888888999999999999999999999998877777777764

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.49  E-value=0.029  Score=43.29  Aligned_cols=102  Identities=14%  Similarity=0.066  Sum_probs=52.4

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhh-hchHHHHH----HHHHHHHHHHHHHhh-c-c---hhHHHHHHHHHHHHHHhhhhhh
Q 024637          112 VDVFIASLAELPGLILSAIIVDK-IGRKLSMV----LMFVSACIFLLPLVF-H-Q---SAVVTTLLLFGVRMCVTGTITV  181 (265)
Q Consensus       112 ~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~----~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~~~g~~~~~~~~~  181 (265)
                      ....+...+..+|.+..|..... +.||+.+.    .+.+...++.+..+. . .   +...++++.++.|++.=+.+++
T Consensus       145 ~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~V  224 (267)
T PF07672_consen  145 IFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGV  224 (267)
T ss_pred             HHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            33444445555666777777654 34554333    222333333333212 1 1   2445667777777776666666


Q ss_pred             hhhhcccc--cCCCcchhhHHHHHhhhhHHHHHH
Q 024637          182 ATIYAPEI--YPTPARTTGFGVASSLGKVGGMVC  213 (265)
Q Consensus       182 ~~~~~~e~--~p~~~r~~~~g~~~~~~~~g~~~~  213 (265)
                      .....-|.  ..++.-|.-.|+...++.+.-.+.
T Consensus       225 iL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~  258 (267)
T PF07672_consen  225 ILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIY  258 (267)
T ss_pred             HhcChhhhcCCCcceehhHHHHHHHHHHHHHHHH
Confidence            66655554  334455666666655555444333

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.09  E-value=0.068  Score=43.21  Aligned_cols=130  Identities=14%  Similarity=0.096  Sum_probs=83.0

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHH--HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC
Q 024637          116 IASLAELPGLILSAIIVDKIGRKL--SMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTP  193 (265)
Q Consensus       116 ~~~~~~~~~~~~~g~l~dr~grr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  193 (265)
                      +..+.++++.+..|++--++.|..  ++.++.+..+.+.+.+..+.+.|+.++...++........++...-+++....+
T Consensus       279 v~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e  358 (433)
T KOG3810|consen  279 VSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSE  358 (433)
T ss_pred             HHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhh
Confidence            334566778888999887776653  344455555556666666888888888888877777777777777777777777


Q ss_pred             cchhhHHHHHhhhhHHHHHHHHHHHHHHhhcc-----------hhHHHHHHHHHHHHHHHHHhcCC
Q 024637          194 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-----------LRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       194 ~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      .-|..+|+.+++.-+   +-+++.-...|..|           +...|.+.+++.++...+.+...
T Consensus       359 ~~gLvFGiNTFvAl~---lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~  421 (433)
T KOG3810|consen  359 LFGLVFGINTFVALI---LQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLMC  421 (433)
T ss_pred             hheeeeehHHHHHHH---HHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHHh
Confidence            788888877766443   33333333344322           12345666666666655544443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.84  E-value=0.004  Score=52.81  Aligned_cols=69  Identities=13%  Similarity=0.068  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHH-HHHHHHHHHHHHh
Q 024637           78 YYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVL-MFVSACIFLLPLV  156 (265)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~~~~~~~~~~~~~  156 (265)
                      .-.+...++.|.++.           +.++.+.+.+....-+..+++.+++|+++||+.+|+.+++ +.+....+.+++.
T Consensus        27 ~g~l~pll~vy~kQL-----------Gl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~   95 (618)
T KOG3762|consen   27 FGSLFPLLAVYFKQL-----------GLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLV   95 (618)
T ss_pred             ccccchHHHHHHHHc-----------CCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhee
Confidence            334556677777555           4888898998888889999999999999999976655554 4555555555555


Q ss_pred             h
Q 024637          157 F  157 (265)
Q Consensus       157 ~  157 (265)
                      +
T Consensus        96 f   96 (618)
T KOG3762|consen   96 F   96 (618)
T ss_pred             e
Confidence            4

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.31  E-value=0.025  Score=46.64  Aligned_cols=104  Identities=17%  Similarity=0.140  Sum_probs=63.3

Q ss_pred             HHHHH-HHhhhhHHHHHHHHHHhhhchHHHHHHHHH-HHHHHHHHH-------hhcchhHHHHHHHHHHHHHHhhhhhhh
Q 024637          112 VDVFI-ASLAELPGLILSAIIVDKIGRKLSMVLMFV-SACIFLLPL-------VFHQSAVVTTLLLFGVRMCVTGTITVA  182 (265)
Q Consensus       112 ~~~~~-~~~~~~~~~~~~g~l~dr~grr~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~  182 (265)
                      ....+ +++...+|.+...++-++= ||.......+ ...+-.+.+       ....+.++.++...+.|+..|-..+..
T Consensus       286 ~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~  364 (406)
T KOG1479|consen  286 LLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLI  364 (406)
T ss_pred             HHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhhe
Confidence            33344 6677777866666554443 3333222221 222222221       114556777888888999999888999


Q ss_pred             hhhcccccCCCcchhhHHHHHhhhhHHHHHHHHH
Q 024637          183 TIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLV  216 (265)
Q Consensus       183 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i  216 (265)
                      ..+.++-.|++++-.+..+...+-..|-..|..+
T Consensus       365 m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  365 MMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             ehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            9999999998877666666555555555555544

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.03  E-value=1.5  Score=36.50  Aligned_cols=32  Identities=13%  Similarity=0.041  Sum_probs=20.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC
Q 024637          161 AVVTTLLLFGVRMCVTGTITVATIYAPEIYPTP  193 (265)
Q Consensus       161 ~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  193 (265)
                      ++..++...+.+++.+..+...+...+++ |++
T Consensus       117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~  148 (406)
T KOG1479|consen  117 FLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSE  148 (406)
T ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhcC-CHH
Confidence            44455556667777777777777777664 544

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=94.81  E-value=2.3  Score=36.51  Aligned_cols=91  Identities=11%  Similarity=-0.007  Sum_probs=47.0

Q ss_pred             cccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHH
Q 024637           49 FSSFFMLFSRKLIRTTLLLWVLFF-ANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLIL  127 (265)
Q Consensus        49 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (265)
                      ..+++.++++++.....+..+++. ..+..++..-.......     .|+.+.      ..-.+......++..++..++
T Consensus       254 ~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~-----p~~~~~------~~f~g~~~~~~gi~tl~~~l~  322 (472)
T TIGR00769       254 MESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQY-----PSPNEY------SAFMGDFSTWTGVVSVTMMLL  322 (472)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence            356667777777766655555543 23333322222221111     011000      112233344445555566677


Q ss_pred             HHHHHhhhchHHHHHHHHHHHHH
Q 024637          128 SAIIVDKIGRKLSMVLMFVSACI  150 (265)
Q Consensus       128 ~g~l~dr~grr~~~~~~~~~~~~  150 (265)
                      .+++.+|+|-+...++.-++..+
T Consensus       323 ~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       323 SGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHH
Confidence            79999999998777666555544

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=94.62  E-value=0.079  Score=44.40  Aligned_cols=116  Identities=9%  Similarity=-0.089  Sum_probs=60.0

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-------------------
Q 024637          112 VDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVR-------------------  172 (265)
Q Consensus       112 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------------  172 (265)
                      +-..+..+...+.+....++.||+|-|+.++.+.....++.-+.....+.+.........|                   
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~  415 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI  415 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence            4455666677788899999999999555544444423332222222222222222222222                   


Q ss_pred             --HHHhhhhhhhhhhcccccCCC--cchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchh
Q 024637          173 --MCVTGTITVATIYAPEIYPTP--ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR  227 (265)
Q Consensus       173 --~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~  227 (265)
                        +-....+.+.++..+......  -+|...|+.+....+.+++.....|.+.+..|..
T Consensus       416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~  474 (498)
T KOG0637|consen  416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGG  474 (498)
T ss_pred             hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCc
Confidence              111112222333333222222  2355566667777788888888778877776543

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=94.13  E-value=0.42  Score=39.42  Aligned_cols=58  Identities=17%  Similarity=0.120  Sum_probs=46.5

Q ss_pred             HHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcc
Q 024637          168 LFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH  225 (265)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~  225 (265)
                      ..+.++.....+....+..+++.|+..-|+.+.+.++..++|+-.-..+..++.|..+
T Consensus       376 y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  376 YAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             HHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence            3444555555566778889999999999999999999999999888888888887543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.96  E-value=0.96  Score=35.62  Aligned_cols=130  Identities=18%  Similarity=0.093  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchH--HHHH
Q 024637           65 LLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRK--LSMV  142 (265)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~  142 (265)
                      ++..+-.......|....+|.|.+..+..          +   .--+.++.-++++.++|+-+..++..|-..|  ..+.
T Consensus       252 LLG~iqsLFE~smytFVFLWTPaLspn~e----------~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymq  318 (454)
T KOG4332|consen  252 LLGAIQSLFEGSMYTFVFLWTPALSPNDE----------E---IPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQ  318 (454)
T ss_pred             HHHHHHHHHhhhhheeeeeecccCCCCcc----------c---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHH
Confidence            33333333344444445667776652111          1   1225556666677778877777766654433  3344


Q ss_pred             HHHHHHHHHHHHHhh----c---chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhh
Q 024637          143 LMFVSACIFLLPLVF----H---QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGK  207 (265)
Q Consensus       143 ~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~  207 (265)
                      +..++..+...+...    +   .+...-++..+++-.++|..+|...-+=++..|.+.|++.+.+...--+
T Consensus       319 ivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLn  390 (454)
T KOG4332|consen  319 IVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLN  390 (454)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhh
Confidence            444444433332222    1   1233345566667778889999999999999999999887766544333

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=93.76  E-value=3.2  Score=33.99  Aligned_cols=135  Identities=15%  Similarity=0.039  Sum_probs=64.7

Q ss_pred             CCCchHHHHHHHHHhhhhHHHHHHHHHHhhhc-hHHH---HHHHHHH---HHHHHHHHhh--cchhHHHHHHHHHHHHHH
Q 024637          105 SKDNSLYVDVFIASLAELPGLILSAIIVDKIG-RKLS---MVLMFVS---ACIFLLPLVF--HQSAVVTTLLLFGVRMCV  175 (265)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-rr~~---~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~g~~~  175 (265)
                      ....+.+.+...+.....+|+.+.-++.|.-- .|-+   ++.+.+.   ..+..+.++.  .++.+.+++..++.|.-.
T Consensus        40 ~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LV  119 (508)
T COG4262          40 GGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLV  119 (508)
T ss_pred             CceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            33345555555555555666666666555322 2111   1112111   1111112222  446677788888888888


Q ss_pred             hhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHH
Q 024637          176 TGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLV-TSCHLRLAVILFEVVFVLAI  241 (265)
Q Consensus       176 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~-~~~~~~~~~~~~~~~~~i~~  241 (265)
                      |.-.|....+...-..  .-....+.....-.+|+..+.+..+++. ...|......+.+.+.++++
T Consensus       120 G~EiPL~mrml~~r~a--~~k~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aA  184 (508)
T COG4262         120 GAEIPLLMRMLQRRQA--KAKDLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAA  184 (508)
T ss_pred             hcchHHHHHHHHHHHH--HHHhhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Confidence            8888888877765111  1111122222234466666655555443 33343333334444444333

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.31  E-value=2.4  Score=36.08  Aligned_cols=32  Identities=13%  Similarity=0.001  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC
Q 024637          161 AVVTTLLLFGVRMCVTGTITVATIYAPEIYPTP  193 (265)
Q Consensus       161 ~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~  193 (265)
                      .+..++..++.|++.+...+...++.+ .+|++
T Consensus       106 f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~  137 (437)
T TIGR00939       106 FVTTMASVVIINSGMALLQGSLFGLAG-VFPST  137 (437)
T ss_pred             HHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH
Confidence            445556666777787777777777777 46654

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=92.43  E-value=2.3  Score=36.56  Aligned_cols=72  Identities=13%  Similarity=0.061  Sum_probs=37.5

Q ss_pred             hhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh-----c-----------chhHHHHHHHHHHHHHHHH
Q 024637          180 TVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS-----C-----------HLRLAVILFEVVFVLAIAS  243 (265)
Q Consensus       180 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~-----~-----------~~~~~~~~~~~~~~i~~~~  243 (265)
                      ...-.+.-.+..++.++-+........++|-+++-.++-.+-+.     +           .....+.+.+.+.++..+.
T Consensus       137 IAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~  216 (544)
T PF13000_consen  137 IAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTIL  216 (544)
T ss_pred             ceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHH
Confidence            34445555667777777765554455556666665554433211     0           1112334455555555566


Q ss_pred             HhcCCccc
Q 024637          244 SLLFPFET  251 (265)
Q Consensus       244 ~~~~~~~~  251 (265)
                      ..++.+|.
T Consensus       217 v~~~k~E~  224 (544)
T PF13000_consen  217 VAFFKKEK  224 (544)
T ss_pred             HheEeecc
Confidence            66665553

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PRK10263 DNA translocase FtsK; Provisional

Probab=91.72  E-value=7.1  Score=37.74  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=14.4

Q ss_pred             HHhhhhHHHHHHHHHHhhhchHH
Q 024637          117 ASLAELPGLILSAIIVDKIGRKL  139 (265)
Q Consensus       117 ~~~~~~~~~~~~g~l~dr~grr~  139 (265)
                      -+.++.+|.++...+..-+|--.
T Consensus        61 ~Nl~GiVGA~LAD~L~~LFGl~A   83 (1355)
T PRK10263         61 HNLGGMPGAWLADTLFFIFGVMA   83 (1355)
T ss_pred             ccccchHHHHHHHHHHHHHhHHH
Confidence            34666677777666666667433

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=91.34  E-value=1.8  Score=30.68  Aligned_cols=36  Identities=11%  Similarity=0.059  Sum_probs=29.5

Q ss_pred             hhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHH
Q 024637          177 GTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMV  212 (265)
Q Consensus       177 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~  212 (265)
                      +..++.|...+...+++..|+..|+-.+-.|++.+.
T Consensus       110 gllGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~  145 (153)
T PF11947_consen  110 GLLGISYGILSASWDPEREGSLLGWEEFKRNWGRMW  145 (153)
T ss_pred             HHHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence            334788999999999999999999998888876554

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=91.31  E-value=4.2  Score=33.03  Aligned_cols=71  Identities=11%  Similarity=0.148  Sum_probs=46.5

Q ss_pred             hhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 024637          119 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIY  190 (265)
Q Consensus       119 ~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  190 (265)
                      +.-+..+++.+.+.+++|-|.++.++..........-. -+.+...+......|++.+..++.--++++++-
T Consensus        69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl-~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANL-EPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc-chhHHhhccHHHhhccccccccccCcceecHHH
Confidence            34456677777999999999998877666555433221 233344555666778887777766666666653

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=90.35  E-value=0.73  Score=36.90  Aligned_cols=134  Identities=10%  Similarity=0.055  Sum_probs=77.6

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 024637          111 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIY  190 (265)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  190 (265)
                      +.....-.+...+.-+......||+.--.-..+..++.+.++++.+++.+.+.-+....+..++.|..-. .+.-.+..+
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEi-TFL~lss~Y  143 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEI-TFLALSSRY  143 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCccee-ehhhhhccC
Confidence            3334444456666777778888886433334556677778888888888888777777777766665533 333333344


Q ss_pred             CCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHhcCCc
Q 024637          191 PTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS--CHLRLAVILFEVVFVLAIASSLLFPF  249 (265)
Q Consensus       191 p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~  249 (265)
                      |+..-   .++. .....++.+|..-...+.+.  ...+..+++...+..+.++..+++.+
T Consensus       144 ~~~~i---~~WS-SGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~  200 (409)
T KOG3880|consen  144 PSIVI---AGWS-SGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLK  200 (409)
T ss_pred             CCcee---cccc-CCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeC
Confidence            43221   1111 11223445555555555542  34566777777777666666666653

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.20  E-value=2.2  Score=28.01  Aligned_cols=27  Identities=15%  Similarity=0.146  Sum_probs=17.0

Q ss_pred             hhhhHHHHHHHHHHhhh-chHHHHHHHH
Q 024637          119 LAELPGLILSAIIVDKI-GRKLSMVLMF  145 (265)
Q Consensus       119 ~~~~~~~~~~g~l~dr~-grr~~~~~~~  145 (265)
                      +++++.....||+.||+ |.++..++.+
T Consensus        53 IsGilVGa~iG~llD~~agTsPwglIv~   80 (116)
T COG5336          53 ISGILVGAGIGWLLDKFAGTSPWGLIVF   80 (116)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            44555667789999996 4554444333

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=87.13  E-value=19  Score=31.26  Aligned_cols=73  Identities=14%  Similarity=0.240  Sum_probs=48.0

Q ss_pred             HHHHHHHHhhhhhhhhhhcccccCCC-cchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 024637          168 LFGVRMCVTGTITVATIYAPEIYPTP-ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA  240 (265)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~e~~p~~-~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~  240 (265)
                      .+..++........--..+.+.+|.+ .+..-+|-.+...++-..+..++++.+....||.....+...+.++.
T Consensus       289 vi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit  362 (491)
T PF03219_consen  289 VIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILIT  362 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Confidence            34455555555555666777788765 45666666666666555666688888899999987776665555443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=86.70  E-value=3.9  Score=33.56  Aligned_cols=19  Identities=11%  Similarity=0.169  Sum_probs=12.5

Q ss_pred             HhhhchHHHHHHHHHHHHH
Q 024637          132 VDKIGRKLSMVLMFVSACI  150 (265)
Q Consensus       132 ~dr~grr~~~~~~~~~~~~  150 (265)
                      .||+.-.|++.+..-+.++
T Consensus       208 ~e~ft~sKllav~~si~GV  226 (416)
T KOG2765|consen  208 VERFTLSKLLAVFVSIAGV  226 (416)
T ss_pred             cchhhHHHHHHHHHhhccE
Confidence            7999888877554444433

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=86.68  E-value=18  Score=30.32  Aligned_cols=39  Identities=15%  Similarity=-0.004  Sum_probs=25.8

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHH
Q 024637          108 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV  146 (265)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  146 (265)
                      ..+.....+-+....+...+.|...|+..|+|++....+
T Consensus        63 ~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~  101 (503)
T KOG2601|consen   63 LLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLL  101 (503)
T ss_pred             hhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHh
Confidence            334444445555556666777888899999998765544

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=84.18  E-value=2.8  Score=34.36  Aligned_cols=95  Identities=20%  Similarity=0.097  Sum_probs=68.7

Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhh
Q 024637          127 LSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLG  206 (265)
Q Consensus       127 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~  206 (265)
                      ..-.+.|-..-|++++.-.+.......++.+.++.+..=++-+..|.... .-...++++-+..+++++.++.|.+....
T Consensus        61 pvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~  139 (433)
T KOG3810|consen   61 PVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAF  139 (433)
T ss_pred             HHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHH
Confidence            34457898888988888777777788888888887776666666665433 23567788888889999989888887776


Q ss_pred             hHHHHHHHHHHHHHHh
Q 024637          207 KVGGMVCPLVAVGLVT  222 (265)
Q Consensus       207 ~~g~~~~~~i~~~l~~  222 (265)
                      -.|-..|..++-.+..
T Consensus       140 L~g~~~g~vlaQlLvs  155 (433)
T KOG3810|consen  140 LVGKFVGSVLAQLLVS  155 (433)
T ss_pred             HHHhHHHhHHHHHHhh
Confidence            6666666666555543

>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.14  E-value=12  Score=32.52  Aligned_cols=27  Identities=7%  Similarity=-0.170  Sum_probs=12.2

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhh
Q 024637          108 NSLYVDVFIASLAELPGLILSAIIVDK  134 (265)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr  134 (265)
                      ++-+.+.+...+..++.++++|+.+-|
T Consensus       359 s~RGsLmT~~~~l~v~~G~~agY~s~r  385 (628)
T KOG1278|consen  359 SSRGSLMTAMVLLFVFMGFVAGYVSAR  385 (628)
T ss_pred             cccccHHHHHHHHHHHHHHhhhhhhhh
Confidence            333334444334444455555555544

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=83.82  E-value=15  Score=32.18  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=15.2

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhch
Q 024637          112 VDVFIASLAELPGLILSAIIVDKIGR  137 (265)
Q Consensus       112 ~~~~~~~~~~~~~~~~~g~l~dr~gr  137 (265)
                      .....+.+.+.+++.+++++...+|.
T Consensus       301 ~~i~~y~~~~~iaGy~S~~~yk~~~g  326 (521)
T PF02990_consen  301 AAIILYALTSFIAGYVSARLYKSFGG  326 (521)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence            33444455666666666666666654

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=83.62  E-value=0.89  Score=35.01  Aligned_cols=32  Identities=19%  Similarity=0.106  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 024637          123 PGLILSAIIVDKIGRKLSMVLMFVSACIFLLP  154 (265)
Q Consensus       123 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  154 (265)
                      +..+.+-+++.|+.-|.+.+++.+++.+..+.
T Consensus       255 lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~  286 (294)
T KOG2881|consen  255 LAVIGGKYLASKISVRTVTLIGGILFIIFGLV  286 (294)
T ss_pred             HHHhhhHHHhhhheeEEEEEecchhHHHHHHH
Confidence            33344456788898888777776666655443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=81.15  E-value=14  Score=24.80  Aligned_cols=42  Identities=17%  Similarity=0.173  Sum_probs=25.9

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 024637          110 LYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIF  151 (265)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~  151 (265)
                      .+.......++..++..+.+.+.|..|.+..+.+...+..++
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            344455556777777777777777777666555544444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.87
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.86
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.85
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.84
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.82
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.8
2xut_A	524	Proton/peptide symporter family protein; transport	99.8
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.76
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.76
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.7
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.62
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.44
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.38
2xut_A	524	Proton/peptide symporter family protein; transport	99.18

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.87  E-value=6.1e-21  Score=161.37  Aligned_cols=180  Identities=16%  Similarity=0.176  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 024637           71 FFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACI  150 (265)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  150 (265)
                      .+......+.+..|.|.+....+           .+.........+.++..+++.++.+++.||+|||+.++.+...+.+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          286 IFQQFVGINVVLYYAPEVFKTLG-----------ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI  354 (491)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSS-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHhcchHHHHhcC-----------CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence            33344445566667777664433           4445556666777788899999999999999999999988888887


Q ss_pred             HHHHHhh----cchhHHHHHHHHHHHHHH-hhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh--
Q 024637          151 FLLPLVF----HQSAVVTTLLLFGVRMCV-TGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS--  223 (265)
Q Consensus       151 ~~~~~~~----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~--  223 (265)
                      +++.+..    ....+..++..++...+. .+..++.+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+.  
T Consensus       355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~  434 (491)
T 4gc0_A          355 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW  434 (491)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766543    222222233333322222 233467889999999999999999999999999999999988876543  


Q ss_pred             ----cchhHHHHHHHHHHHHHHHHHhcCCccccccchhhhhh
Q 024637          224 ----CHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVD  261 (265)
Q Consensus       224 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  261 (265)
                          .+....+++++++++++.++.+++.||||+++++|.++
T Consensus       435 ~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~  476 (491)
T 4gc0_A          435 LVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEA  476 (491)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGG
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHH
Confidence                34556788889999999888888889999999988764

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.86  E-value=4.1e-21  Score=160.58  Aligned_cols=181  Identities=14%  Similarity=0.033  Sum_probs=154.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL  139 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  139 (265)
                      .++.+...++..+......+.+..++|.+.++           . .+..+.++..++..++..++.+++|+++||+|||+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~   93 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-----------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV   93 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-----------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH
Confidence            34555566666666666666677778877632           2 45677899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHH
Q 024637          140 SMVLMFVSACIFLLPLVF----HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPL  215 (265)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~  215 (265)
                      ++.++.++.+++.++..+    .++.+.+++.+++.|++.+...+...++++|.+|+++|+.++++.+....+|.+++|.
T Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  173 (451)
T 1pw4_A           94 FLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPL  173 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988    8888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          216 VAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       216 i~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      +++++.+..+ |+..+++.+++.++..++.++..||++
T Consensus       174 ~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~  211 (451)
T 1pw4_A          174 LFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP  211 (451)
T ss_dssp             HHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence            9999989888 999998888887776666555555543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.85  E-value=1e-19  Score=151.56  Aligned_cols=182  Identities=12%  Similarity=0.065  Sum_probs=151.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 024637           60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL  139 (265)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  139 (265)
                      .++.++..++..+......+......|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~   92 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAF-----------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA   92 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH
Confidence            445555666666666666677777788877544           478889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH---hhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHH
Q 024637          140 SMVLMFVSACIFLLPL---VFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLV  216 (265)
Q Consensus       140 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i  216 (265)
                      ++.++.++.+++.++.   .+.++.+.+++.+++.|++.+...+...++++|.+|+++|+.++++.+....+|..++|.+
T Consensus        93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  172 (438)
T 3o7q_A           93 GIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF  172 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888   6788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-hhcc-------------------------hhHHHHHHHHHHHHHHHHHhcC-Ccccc
Q 024637          217 AVGLV-TSCH-------------------------LRLAVILFEVVFVLAIASSLLF-PFETM  252 (265)
Q Consensus       217 ~~~l~-~~~~-------------------------~~~~~~~~~~~~~i~~~~~~~~-~~~~~  252 (265)
                      .+.+. +..+                         |++.+++.+++.++..++.++. .||++
T Consensus       173 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~  235 (438)
T 3o7q_A          173 GQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ  235 (438)
T ss_dssp             TTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred             HHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence            99998 5544                         7778777766665555444433 34443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.84  E-value=1.3e-19  Score=153.27  Aligned_cols=181  Identities=12%  Similarity=0.033  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhh-hchHHH
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDK-IGRKLS  140 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~  140 (265)
                      +..+..+...+.....+++...+++.+..+..     ..++.+.+..+.++..++..++..++.++.|+++|| +|||++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~   87 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLI-----STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA   87 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            34455555666667777777777777764420     000125788889999999999999999999999999 899999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc--chhhHHHHHhhhhHHHHHHHHHHH
Q 024637          141 MVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPA--RTTGFGVASSLGKVGGMVCPLVAV  218 (265)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~g~~~~~~i~~  218 (265)
                      +.++.++.+++.+++.+.++.+.+++.+++.|++.+...+...++++|.+|++.  |+.++++.+...++|..++|.+.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  167 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH
Confidence            999999999999999889899999999999999999999999999999999988  777888888999999999999999


Q ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHHhcC
Q 024637          219 GLVTSCHLRLAVILFEVVFVLAIASSLLF  247 (265)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  247 (265)
                      ++.+..||++.+.+.++..+++.+..++.
T Consensus       168 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          168 AAQEAAGYHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999988777666665555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.82  E-value=1.2e-18  Score=145.49  Aligned_cols=177  Identities=14%  Similarity=0.170  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh--chHH
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRKL  139 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~  139 (265)
                      +.++...+..+......+++..+.|.+.++..          +.+..+.++......++.+++.++.|++.||+  |||+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~  321 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  321 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBS----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence            34445555555666777778888999986643          47777888888999999999999999999999  9999


Q ss_pred             HHHHHHHHHH-HHHHHHhhc--chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhH-HHHHHHH
Q 024637          140 SMVLMFVSAC-IFLLPLVFH--QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKV-GGMVCPL  215 (265)
Q Consensus       140 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~  215 (265)
                      .+.++.++.. ++.+++.+.  .+.+...+..++.|++.+...+....++.|.+|++.|+++.|+.+...++ |..++|.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~  401 (451)
T 1pw4_A          322 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA  401 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9888877766 566555554  35666777777888888888888899999999999999999999999999 9999999


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          216 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       216 i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      +.|++.+..|+...+.+.+++.+++.++.++..
T Consensus       402 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          402 IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888888888777776666554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.80  E-value=2.6e-19  Score=146.27  Aligned_cols=176  Identities=14%  Similarity=0.021  Sum_probs=149.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHH
Q 024637           67 LWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV  146 (265)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~  146 (265)
                      .++..+.............|.+.++.           +.+..+.++..+...++..++.++.|+++||+|||+++.++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   73 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIADMARDL-----------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMS   73 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTS-----------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            34444555555555666677776444           4778889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcch
Q 024637          147 SACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL  226 (265)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~  226 (265)
                      +..++.+...+.++.+.+++.+++.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+++.+..+|
T Consensus        74 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  153 (375)
T 2gfp_A           74 IFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW  153 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence            99999998888889999999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCccccc
Q 024637          227 RLAVILFEVVFVLAIASSLLFPFETMG  253 (265)
Q Consensus       227 ~~~~~~~~~~~~i~~~~~~~~~~~~~~  253 (265)
                      +..+.+.++..++..+...+..||+++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          154 RACYLFLLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence            988888877777666655555566543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.80  E-value=2.4e-18  Score=146.67  Aligned_cols=182  Identities=12%  Similarity=0.043  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh-chHHHH
Q 024637           63 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI-GRKLSM  141 (265)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~  141 (265)
                      .++..++..+.....+++...+++.+..+..+.+    ...+.+..+.++..++..++..++.+++|+++||+ |||+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~   88 (524)
T 2xut_A           13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLS----IPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI   88 (524)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC----CSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            3344555566666777777777777764432000    00116778889999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHH---HHhhhhHHHHHHHHHH
Q 024637          142 VLMFVSACIFLLPLVFHQ-SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGV---ASSLGKVGGMVCPLVA  217 (265)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~~g~~~~~~i~  217 (265)
                      .++.++.+++.++..+.+ +.+.+++.+++.|++.+...+...++++|.+|++.|+++.+.   .+...++|.+++|.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~  168 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM  168 (524)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888887 888888999999999999999999999999999999876666   8888899999999999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637          218 VGLVTSCHLRLAVILFEVVFVLAIASSLLFP  248 (265)
Q Consensus       218 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (265)
                      +++.+..+|+..+.+.+++.++..+..++..
T Consensus       169 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  199 (524)
T 2xut_A          169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLGR  199 (524)
T ss_dssp             THHHHTSCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999988999998888777766666555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.76  E-value=1.3e-17  Score=138.25  Aligned_cols=148  Identities=13%  Similarity=0.068  Sum_probs=119.5

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 024637          108 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAP  187 (265)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  187 (265)
                      ...+....+..++.+++.++.|+++||+|||+++.++.++.+++.+.+.+.++.+..++..++.+++.+...+..+.+++
T Consensus       259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  338 (417)
T 2cfq_A          259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT  338 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666767788889999999999999999999888888887777666666666666666666666666677788999


Q ss_pred             cccCCCcchhhHHHH-HhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccccc
Q 024637          188 EIYPTPARTTGFGVA-SSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRE  255 (265)
Q Consensus       188 e~~p~~~r~~~~g~~-~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  255 (265)
                      |.+|++.|+++.++. +...++|++++|.+.|++.+..|+...+.+.+++.+++.++.++..||+++.+
T Consensus       339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred             HHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence            999999999999995 77778999999999999999888877888888888888777777666665544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.76  E-value=2.8e-17  Score=136.86  Aligned_cols=178  Identities=10%  Similarity=-0.030  Sum_probs=135.0

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKL-SSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSA  129 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  129 (265)
                      +++++++++..+   ...+..+......+....+.|.+ .++..          +.+..+.+....+..++.+++.++.|
T Consensus       250 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g  316 (438)
T 3o7q_A          250 SLSRLARIRHWR---WAVLAQFCYVGAQTACWSYLIRYAVEEIP----------GMTAGFAANYLTGTMVCFFIGRFTGT  316 (438)
T ss_dssp             HHHHHTTCSHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHST----------TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhChHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhccC----------CcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            455666543333   33333344455566667778888 65543          46777888888888999999999999


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHH
Q 024637          130 IIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVG  209 (265)
Q Consensus       130 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g  209 (265)
                      +++||+|||+++.++.++..++.+++.+.++.+..+ ..++.+++.+..++..+++..|.+|++ |+.+.++.. ...+|
T Consensus       317 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g  393 (438)
T 3o7q_A          317 WLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIG  393 (438)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHH
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHH
Confidence            999999999999999999988888877777665443 446778888888899999999999977 888888877 66799


Q ss_pred             HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHH
Q 024637          210 GMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASS  244 (265)
Q Consensus       210 ~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~i~~~~~  244 (265)
                      +.++|.+.|++.+..| +...+.+.++..++..++.
T Consensus       394 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  429 (438)
T 3o7q_A          394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA  429 (438)
T ss_dssp             HHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988 7777766555444444333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.70  E-value=3.1e-16  Score=132.45  Aligned_cols=144  Identities=16%  Similarity=0.030  Sum_probs=115.2

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh------------------cchhHHHHHHHH
Q 024637          108 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF------------------HQSAVVTTLLLF  169 (265)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~  169 (265)
                      ...++..+...++.++|++++|+++||+|||+++.++.++..++.++.++                  +++.+.+++.++
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~  134 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI  134 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence            44567777788999999999999999999999999999999998887763                  678889999999


Q ss_pred             HHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc--------chhHHHHHHHHHHHHHH
Q 024637          170 GVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC--------HLRLAVILFEVVFVLAI  241 (265)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~--------~~~~~~~~~~~~~~i~~  241 (265)
                      +.|++.|+..+....+++|..|++.|+...++.+....+|..+++.+...+....        +|+..+ ....+..+..
T Consensus       135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  213 (491)
T 4gc0_A          135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMF-ASECIPALLF  213 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHH-HTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHh-hhhhhhhhhh
Confidence            9999999999999999999999999999999999999999988888887765432        233233 3333333334


Q ss_pred             HHHhcCCcccc
Q 024637          242 ASSLLFPFETM  252 (265)
Q Consensus       242 ~~~~~~~~~~~  252 (265)
                      ++..+..||+.
T Consensus       214 ~~~~~~~peSp  224 (491)
T 4gc0_A          214 LMLLYTVPESP  224 (491)
T ss_dssp             HHHGGGSCCCH
T ss_pred             hhhhhcCCCCh
Confidence            44445556764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.62  E-value=2.1e-15  Score=127.42  Aligned_cols=146  Identities=9%  Similarity=-0.093  Sum_probs=108.6

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH-----HHHHHHHHHHHHHhhc---------chhHHHHHHHHHHHH
Q 024637          108 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV-----LMFVSACIFLLPLVFH---------QSAVVTTLLLFGVRM  173 (265)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~  173 (265)
                      ...+.......++.+++.++.+++.||+|||+...     ++.++.+++.+++...         .+.+..++..++.++
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  398 (491)
T 4aps_A          319 FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVIL  398 (491)
T ss_dssp             SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHH
T ss_pred             cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Confidence            34455566667778888999999999999986544     6666666666655542         255666777788888


Q ss_pred             HHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccc
Q 024637          174 CVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  253 (265)
Q Consensus       174 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  253 (265)
                      +.+...+....++.|.+|++.|+++.|+.+...++|..++|.+.+++.+. +....+...+++.+++.++.+++.++.++
T Consensus       399 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (491)
T 4aps_A          399 GEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQG  477 (491)
T ss_dssp             HHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999999999887654 56677777777777777777766655544


Q ss_pred             c
Q 024637          254 R  254 (265)
Q Consensus       254 ~  254 (265)
                      +
T Consensus       478 ~  478 (491)
T 4aps_A          478 L  478 (491)
T ss_dssp             -
T ss_pred             H
Confidence            3

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.44  E-value=2.1e-14  Score=118.98  Aligned_cols=167  Identities=11%  Similarity=0.021  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 024637           74 NVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL  153 (265)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~  153 (265)
                      ....+.....++|.+.++..          +.+..+.++..+...++..++++++|+++||+|||+++.++..+..++..
T Consensus        19 ~~~~~~~~~~~~~~~l~~~~----------g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~   88 (417)
T 2cfq_A           19 YFFIMGAYFPFFPIWLHDIN----------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFA   88 (417)
T ss_dssp             HHHHHHHHTTTHHHHHHTTT----------CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            33344444556777765433          57778889999999999999999999999999999999888776654221


Q ss_pred             HH---hhcchhH-HHHHHHHHHHHHHhhhhhhhhhhcccccCC--CcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchh
Q 024637          154 PL---VFHQSAV-VTTLLLFGVRMCVTGTITVATIYAPEIYPT--PARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR  227 (265)
Q Consensus       154 ~~---~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~  227 (265)
                      ..   .+..... .......+.+++.+..++.......+..+.  +.|+.+.|.....+.+|..++|.+.+++.+. +|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~~~  167 (417)
T 2cfq_A           89 PFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQ  167 (417)
T ss_dssp             HHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-CSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-chh
Confidence            11   1111100 011122222222222222222223333322  3567777888888889999999999998874 677


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCccc
Q 024637          228 LAVILFEVVFVLAIASSLLFPFET  251 (265)
Q Consensus       228 ~~~~~~~~~~~i~~~~~~~~~~~~  251 (265)
                      ..+++.++..++..+..++.+||+
T Consensus       168 ~~f~~~~~~~~~~~~~~~~~~~~~  191 (417)
T 2cfq_A          168 FVFWLGSGCALILAVLLFFAKTDA  191 (417)
T ss_dssp             HHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCccc
Confidence            777655554444333333444443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.38  E-value=6.4e-14  Score=114.25  Aligned_cols=166  Identities=11%  Similarity=0.010  Sum_probs=115.8

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHH
Q 024637           51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAI  130 (265)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  130 (265)
                      ++++++++   +.++...+..+......+.+..+.|.+.++..          +.+..+.+.......++.+++.++.++
T Consensus       191 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~g~~~~~~~~~~~~~~~~~~~  257 (375)
T 2gfp_A          191 SYKTLFGN---SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVL----------GLSSMTVSILFILPIPAAFFGAWFAGR  257 (375)
T ss_dssp             CSTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHH----------HHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred             HHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555543   23334444444555666667777787764422          456667788888888899999999999


Q ss_pred             HHhhhchHHHHHHHHHH-HHHHHH--HHhh--cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhh
Q 024637          131 IVDKIGRKLSMVLMFVS-ACIFLL--PLVF--HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSL  205 (265)
Q Consensus       131 l~dr~grr~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~  205 (265)
                      +.||++++.  ..+..+ ...+..  ....  .++.+..++..++.+++.+...+....+..|.+| +.|+++.|+.+..
T Consensus       258 l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~  334 (375)
T 2gfp_A          258 PNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGL  334 (375)
T ss_dssp             TTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHH
Confidence            999998832  223222 222222  1111  2355556677778888888889999999999999 8899999999999


Q ss_pred             hhHHHHHHHHHHHHHHhhcchhHHHHH
Q 024637          206 GKVGGMVCPLVAVGLVTSCHLRLAVIL  232 (265)
Q Consensus       206 ~~~g~~~~~~i~~~l~~~~~~~~~~~~  232 (265)
                      .++|..++|.+.+.+.+..++...+..
T Consensus       335 ~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          335 QNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            999999999999998877665544433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.18  E-value=2.3e-11  Score=103.52  Aligned_cols=117  Identities=12%  Similarity=0.008  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhc---------chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHH
Q 024637          139 LSMVLMFVSACIFLLPLVFH---------QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVG  209 (265)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g  209 (265)
                      +.+.++.++.+++.+++.+.         .+.+..++..++.+++.+...+....++.|.+|++.|++++|+.+...++|
T Consensus       374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g  453 (524)
T 2xut_A          374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVG  453 (524)
T ss_dssp             HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHH
Confidence            45667777777777666552         355666777788888888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc----------ch-hHHHHHHHHHHHHHHHHHhcCCccccccc
Q 024637          210 GMVCPLVAVGLVTSC----------HL-RLAVILFEVVFVLAIASSLLFPFETMGRE  255 (265)
Q Consensus       210 ~~~~~~i~~~l~~~~----------~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  255 (265)
                      +.++|.+.+.+.+..          +. ...+++.+++.+++.++.+++.++.++++
T Consensus       454 ~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (524)
T 2xut_A          454 NLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQD  510 (524)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            999999999887632          11 12255666666676666666665555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-06

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 1/125 (0%)

Query: 134 KIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTP 193
             G      +  V+    +  +    +  V  + +  +   + G + +  ++A E+ P  
Sbjct: 316 NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK 375

Query: 194 ARTTGFGVASSLGKVGGMVC-PLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 252
           A  T  G     G +GG V    +    V         ++     +LA+   ++      
Sbjct: 376 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435

Query: 253 GRELK 257
            R  +
Sbjct: 436 RRHEQ 440

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.82
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.8
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.79
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.53

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=7.1e-20  Score=150.58  Aligned_cols=178  Identities=14%  Similarity=0.032  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHH
Q 024637           61 IRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLS  140 (265)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  140 (265)
                      |..+..+++.++........+....|... +.           +.+..+.++..+...++..++.+++|+++||+|||++
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~-----------g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~   91 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQ-----------GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF   91 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SS-----------TTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-----------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            33344444444444444444555667543 32           5888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHH
Q 024637          141 MVLMFVSACIFLLPLVFH----QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLV  216 (265)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i  216 (265)
                      +.++.++.+++.++..+.    .+.+..++.+++.|++.+...+....++.|.+|+++|+.++++.+....+|..++|.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~  171 (447)
T d1pw4a_          92 LPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL  171 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhh
Confidence            999999998888877653    4667788889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc-chhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          217 AVGLVTSC-HLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       217 ~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      .+.+.+.. +|+..+++.+.+.++..++.+++.++
T Consensus       172 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  206 (447)
T d1pw4a_         172 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD  206 (447)
T ss_dssp             HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhHhhhhhcccccchhhhhhHHHHHHHHHHhccc
Confidence            88877654 67777777777776666665555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=8.9e-19  Score=141.75  Aligned_cols=152  Identities=13%  Similarity=0.068  Sum_probs=130.5

Q ss_pred             CCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhh
Q 024637          106 KDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIY  185 (265)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  185 (265)
                      +............++..++..+.+++.||+|+|+.+.++.++.+++.+.+.+.++.+..++..++.+++.+...+...++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  336 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            33455566677778888899999999999999999999999999999999888898888888999999999999999999


Q ss_pred             cccccCCCcchhhHHHHHh-hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccccchh
Q 024637          186 APEIYPTPARTTGFGVASS-LGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELK  257 (265)
Q Consensus       186 ~~e~~p~~~r~~~~g~~~~-~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  257 (265)
                      ++|.+|++.|+++.|+... ...+|..++|.+.|++.|..|+...+++.+++.++..++..+..+++++....
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  409 (417)
T d1pv7a_         337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL  409 (417)
T ss_dssp             HHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHH
T ss_pred             HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence            9999999999999998755 45699999999999999999999999988888887777777766555554443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=5.1e-18  Score=139.32  Aligned_cols=179  Identities=13%  Similarity=0.108  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH
Q 024637           62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSM  141 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  141 (265)
                      +.++......+......++...+.|.+..+..          +.+..+.+....+..++.+++.++.|++.||++|++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  318 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  318 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBS----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhccccc----------ccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc
Confidence            33444444555566667778888888886654          56777888888888999999999999999999876543


Q ss_pred             HHHHHH---HHHHHHHHhh--cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhH-HHHHHHH
Q 024637          142 VLMFVS---ACIFLLPLVF--HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKV-GGMVCPL  215 (265)
Q Consensus       142 ~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~  215 (265)
                      ......   ..++.+....  ..+.+..++..++.+++.++..+....+..|.+|++.|+++.|+.+.++++ |.+++|.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~  398 (447)
T d1pw4a_         319 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA  398 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332222   2222222222  445666677777788888888888999999999999999999999998887 5667899


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcc
Q 024637          216 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  250 (265)
Q Consensus       216 i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (265)
                      +.|++.+..|+...+.+.++..+++.++..++.++
T Consensus       399 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         399 IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             HHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999888888877777766666555433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=7.5e-14  Score=112.31  Aligned_cols=178  Identities=11%  Similarity=0.024  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHH
Q 024637           64 TLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVL  143 (265)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~  143 (265)
                      ++...+..+...........++|.+.++..          +.+..+.++..++..++..++.++.|+++||+|||+++++
T Consensus         9 ~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~----------g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~   78 (417)
T d1pv7a_           9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDIN----------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW   78 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            333333444444444444455666553322          5788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHH----HHHHHHHHHhhhhhhhhhhcccccCC--CcchhhHHHHHhhhhHHHHHHHHHH
Q 024637          144 MFVSACIFLLPLVFHQSAVVTTL----LLFGVRMCVTGTITVATIYAPEIYPT--PARTTGFGVASSLGKVGGMVCPLVA  217 (265)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~g~~~~~~i~  217 (265)
                      +..+..++........+......    ...+.+.+.+...........+..++  +.+....+........+..++|.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (417)
T d1pv7a_          79 IITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIV  158 (417)
T ss_dssp             HHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccc
Confidence            88888887777666444333222    22222222222222222222222222  2345566666777778889999999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637          218 VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  252 (265)
Q Consensus       218 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  252 (265)
                      +.+.+.. ++..+........+..++.++..++++
T Consensus       159 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T d1pv7a_         159 GIMFTIN-NQFVFWLGSGCALILAVLLFFAKTDAP  192 (417)
T ss_dssp             HHHHHHC-HHHHHHHHHHHHHHHHHHHHSSCCCSC
T ss_pred             ccccccc-ccccccchhhHHHHHHHHHHHHhcccc
Confidence            9888764 445555555555555555555544443