Citrus Sinensis ID: 024645


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MMRCCWCCSYSSFAHRLKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVLLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIFSVRLTLAMQIIGFSVRFSSSFLWIQIYRLGVSYVDAAAPPSSRDADFDLRNSFLSPTTTPAAAALPSRCSGSDDAVGGSIYDPAYFSSLFEDSQDNKCLLLGQSDGFGDDGSSSGAEVPQPKASMGRSFQSIDQEENAIGKPQTV
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccc
cccEEccccHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEccccccccccccccccccccccccccccccHHHcccccHHHcccccccccHEcHHcccccccccccccccccccccccccccccccccccccHEEEEHHHHcccccccccc
mmrccwccsyssfaHRLKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVLLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFTHEIwsissdghgaFFIFSVRLTLAMQIIGFSVRFSSSFLWIQIYRLGVsyvdaaappssrdadfdlrnsflsptttpaaaalpsrcsgsddavggsiydpayfsslfedsqdnkclllgqsdgfgddgsssgaevpqpkasmgrsfqsidqeenaigkpqtv
MMRCCWCCSYSSFAHRLKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVLLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIFSVRLTLAMQIIGFSVRFSSSFLWIQIYRLGVSYVDAAAPPSSRDADFDLRNSFLSPTttpaaaalpsrcSGSDDAVGGSIYDPAYFSSLFEDSQDNKCLLLGQSDGFGDDGSSSGaevpqpkasmgrsfqsidqeenaigkpqtv
MMRCCWCCSYSSFAHRLKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVllinlaialfalvaiESSSQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIFSVRLTLAMQIIGFSVRFSSSFLWIQIYRLGVSYVdaaappssrdadfdLRNSFlsptttpaaaalpsRCSGSDDAVGGSIYDPAYFSSLFEDSQDNKClllgqsdgfgddgsssgAEVPQPKASMGRSFQSIDQEENAIGKPQTV
**RCCWCCSYSSFAHRLKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVLLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIFSVRLTLAMQIIGFSVRFSSSFLWIQIYRLGVSYVDA***************************************VGGSIYDPAYFSSLFED**DNKCLLL********************************************
*******CSYSSFAHRLKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVLLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIFSVRLTLAMQIIGFSVRFSSSFLWIQIYRLGVSYVDAAAPPSS********************************AVGGSIYDPAYFSSLFED*****************************************************
MMRCCWCCSYSSFAHRLKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVLLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIFSVRLTLAMQIIGFSVRFSSSFLWIQIYRLGVSYVDAAAPPSSRDADFDLRNSFLSPTTTPAAAALPSRCSGSDDAVGGSIYDPAYFSSLFEDSQDNKCLLLGQSDGF*********************FQSIDQEE*********
*MRCCWCCSYSSFAHRLKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVLLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIFSVRLTLAMQIIGFSVRFSSSFLWIQIYRLGVSYVDAAAPPSSRDADFDLRNSFLSPTTTPAAAALP**CSGSDDAVGGSIYDPAYFSSLFEDS*********************************RSF***DQEENAI******
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMRCCWCCSYSSFAHRLKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVLLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIFSVRLTLAMQIIGFSVRFSSSFLWIQIYRLGVSYVDAAAPPSSRDADFDLRNSFLSPTTTPAAAALPSRCSGSDDAVGGSIYDPAYFSSLFEDSQDNKCLLLGQSDGFGDDGSSSGAEVPQPKASMGRSFQSIDQEENAIGKPQTV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
255564798259 conserved hypothetical protein [Ricinus 0.886 0.907 0.692 5e-87
225435820245 PREDICTED: uncharacterized protein LOC10 0.886 0.959 0.683 4e-83
449463828244 PREDICTED: uncharacterized protein LOC10 0.909 0.987 0.673 5e-82
356576929249 PREDICTED: uncharacterized protein LOC10 0.939 1.0 0.641 5e-82
356519800250 PREDICTED: uncharacterized protein LOC10 0.943 1.0 0.641 9e-82
357475077317 hypothetical protein MTR_4g083300 [Medic 0.950 0.794 0.655 1e-80
42571887250 uncharacterized protein [Arabidopsis tha 0.905 0.96 0.624 1e-78
224073114255 predicted protein [Populus trichocarpa] 0.905 0.941 0.629 1e-78
297853256248 hypothetical protein ARALYDRAFT_474613 [ 0.898 0.959 0.642 1e-78
42570096260 uncharacterized protein [Arabidopsis tha 0.905 0.923 0.620 2e-78
>gi|255564798|ref|XP_002523393.1| conserved hypothetical protein [Ricinus communis] gi|223537343|gb|EEF38972.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 167/241 (69%), Positives = 196/241 (81%), Gaps = 6/241 (2%)

Query: 13  FAHRLKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVLLINLAIALFALVA 72
           F   +KD +Q  +RDYD LQY+AVILIYIQIGCALIGSLGALYNGVLLINL IALFALVA
Sbjct: 3   FCGVVKDRLQNWIRDYDSLQYLAVILIYIQIGCALIGSLGALYNGVLLINLGIALFALVA 62

Query: 73  IESSSQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIFSVRLTLAMQIIG 132
           IESSSQSLGRTYAVLLFCS+ LDISWFILFTH+IW+ISS+ +G FF+FSV+LTL+MQI+G
Sbjct: 63  IESSSQSLGRTYAVLLFCSLFLDISWFILFTHDIWNISSETYGIFFVFSVKLTLSMQIVG 122

Query: 133 FSVRFSSSFLWIQIYRLGVSYVDAAAPPSSRDADFDLRNSFLSPTTTPAAAALPSRCSGS 192
           FSVR SSS LWIQIYRLGVSY +++    +R+AD+DLRNSFLSP T    AA+P  CS S
Sbjct: 123 FSVRLSSSLLWIQIYRLGVSYAESSG---TREADYDLRNSFLSPVT---PAAVPRECSDS 176

Query: 193 DDAVGGSIYDPAYFSSLFEDSQDNKCLLLGQSDGFGDDGSSSGAEVPQPKASMGRSFQSI 252
           D  +GGSIYDPAYFSSLF+D ++N+ L   Q+    D+GS+S  E  Q K S+ RSFQ I
Sbjct: 177 DVVLGGSIYDPAYFSSLFDDCRNNRNLRPDQNSSILDNGSTSSVEASQLKLSISRSFQVI 236

Query: 253 D 253
           D
Sbjct: 237 D 237




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435820|ref|XP_002285768.1| PREDICTED: uncharacterized protein LOC100245017 [Vitis vinifera] gi|297746513|emb|CBI16569.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463828|ref|XP_004149633.1| PREDICTED: uncharacterized protein LOC101215314 [Cucumis sativus] gi|449515770|ref|XP_004164921.1| PREDICTED: uncharacterized protein LOC101225319 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356576929|ref|XP_003556582.1| PREDICTED: uncharacterized protein LOC100776559 [Glycine max] Back     alignment and taxonomy information
>gi|356519800|ref|XP_003528557.1| PREDICTED: uncharacterized protein LOC100795730 [Glycine max] Back     alignment and taxonomy information
>gi|357475077|ref|XP_003607824.1| hypothetical protein MTR_4g083300 [Medicago truncatula] gi|355508879|gb|AES90021.1| hypothetical protein MTR_4g083300 [Medicago truncatula] Back     alignment and taxonomy information
>gi|42571887|ref|NP_974034.1| uncharacterized protein [Arabidopsis thaliana] gi|332195140|gb|AEE33261.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224073114|ref|XP_002303978.1| predicted protein [Populus trichocarpa] gi|222841410|gb|EEE78957.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297853256|ref|XP_002894509.1| hypothetical protein ARALYDRAFT_474613 [Arabidopsis lyrata subsp. lyrata] gi|297340351|gb|EFH70768.1| hypothetical protein ARALYDRAFT_474613 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42570096|ref|NP_683436.3| uncharacterized protein [Arabidopsis thaliana] gi|53828513|gb|AAU94366.1| At1g55535 [Arabidopsis thaliana] gi|55167920|gb|AAV43792.1| At1g55535 [Arabidopsis thaliana] gi|332195139|gb|AEE33260.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
TAIR|locus:504956115260 AT1G55535 "AT1G55535" [Arabido 0.901 0.919 0.512 6.8e-56
TAIR|locus:2092885242 AT3G13420 "AT3G13420" [Arabido 0.581 0.636 0.605 9.3e-43
TAIR|locus:504956115 AT1G55535 "AT1G55535" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 128/250 (51%), Positives = 154/250 (61%)

Query:    17 LKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVXXXXXXXXXXXXXXXESS 76
             L+D I   LRDY +LQ +AV LIY QIGCALIGSLGALYNGV               ES+
Sbjct:     7 LRDRIHPWLRDYVKLQSLAVFLIYAQIGCALIGSLGALYNGVLLINLAIALFALVAIESN 66

Query:    77 SQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIFSVRLTLAMQIIGFSVR 136
             SQSLGRTYAVLLFC++LLDISWFILFT EIWSIS++ +G FFIFSV+LT+AM++IGF VR
Sbjct:    67 SQSLGRTYAVLLFCALLLDISWFILFTEEIWSISAETYGTFFIFSVKLTMAMEMIGFFVR 126

Query:   137 FSSSFLWIQIYRLGVSYVXXXXXXXXXXXXXXLRNSFXXXXXXXXXXXXXXRCSGSDDAV 196
              SSS LW QIYRLG + V              LRNSF              +CSG+++ +
Sbjct:   127 LSSSLLWFQIYRLGAAIVDTSLPRETDSD---LRNSFLNPPTPAIAR----QCSGAEEIL 179

Query:   197 GGSIYDPAYFSSLFEDSQDN---KCXXXXXXXXXXXXXXXXXAEVPQPKASMGRSFQSID 253
             GGSIYDPAY++SLFE+SQ N                      AE    K+ + RS  SID
Sbjct:   180 GGSIYDPAYYTSLFEESQTNINSPKATQVNHYSAGNNGSPSAAEASHIKSPIFRSLHSID 239

Query:   254 QEENAIGKPQ 263
              EE  + KP+
Sbjct:   240 -EEKGLKKPE 248




GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2092885 AT3G13420 "AT3G13420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh4_pg.C_LG_III001811
hypothetical protein (255 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
PF06396162 AGTRAP: Angiotensin II, type I receptor-associated 97.17
smart00805159 AGTRAP Angiotensin II, type I receptor-associated 90.49
>PF06396 AGTRAP: Angiotensin II, type I receptor-associated protein (AGTRAP); InterPro: IPR009436 This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences Back     alignment and domain information
Probab=97.17  E-value=0.0068  Score=52.78  Aligned_cols=96  Identities=24%  Similarity=0.226  Sum_probs=67.6

Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccchhhhhH
Q 024645           44 GCALIGSLGALYNGVLLINLAIALFALVAIESS-SQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIFSV  122 (265)
Q Consensus        44 ~cAliGSLga~Y~GVl~~nlAiaLFALVAIEsg-Sq~LgRtYAvLL~~~llLDI~Wf~lfa~~IwNi~~~k~G~~~~fsv  122 (265)
                      ..|++|  .|+=+++.-.|+.+-..++-||... |-....++.+.+.+++++||+++..|-...-..          -.-
T Consensus        20 tw~~~~--~W~p~sY~f~Nf~~l~~gvWAi~~~dSidav~~~l~~~~~sil~Dii~i~vyf~~~~~~----------~~~   87 (162)
T PF06396_consen   20 TWACLG--NWLPGSYLFYNFLFLALGVWAIHQRDSIDAVQMALVGLVFSILFDIIHIGVYFPSMNLS----------DTD   87 (162)
T ss_pred             HHHHhc--cCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHheeEEeccccccc----------ccc
Confidence            344444  2555666666655444444444332 344677899999999999999988776432211          134


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 024645          123 RLTLAMQIIGFSVRFSSSFLWIQIYRLGV  151 (265)
Q Consensus       123 kl~L~MqiigF~vR~~SslLW~qMwrLG~  151 (265)
                      |+.++|-|+.+++|++|.++=-+|||..=
T Consensus        88 ~Fs~~maIinLllKP~s~~~l~r~~reRG  116 (162)
T PF06396_consen   88 RFSAGMAIINLLLKPISCFFLYRMYRERG  116 (162)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            78999999999999999999999998753



AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.

>smart00805 AGTRAP Angiotensin II, type I receptor-associated protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00