Citrus Sinensis ID: 024660

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
MSRQRPKRTALPPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQT
cccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcc
cccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcc
msrqrpkrtalppaqeniDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQlknnqltcgAELAVSFVEALVKGKVAYDNENLDRVRKIYElfpqipvphnledddDLHELTEALGAAKLRVEGCSSFLKAAIKWSIefgapktgspeLHVMLAEYlysespeldmARVSFHfvrgnnpeKFASTIVNFmgkcypgedDLAVARAILMYLSLGNMKDANYIMDEVKKQVEnkqlqlqpsdLIQFVFYVLQT
msrqrpkrtalppaqenidKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVEnkqlqlqpsdliQFVFYVLQT
MSRQRPKRTALPPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNleddddlheltealGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQT
********************LEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVL**
************************VNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE***L*LQPSDLIQFVFYVLQT
************PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQT
************PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSRQRPKRTALPPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query264 2.2.26 [Sep-21-2011]
A0MT11322 Golgi to ER traffic prote N/A no 0.803 0.658 0.275 2e-19
A1Z3X3323 Golgi to ER traffic prote N/A no 0.803 0.656 0.275 1e-18
Q54TH4309 Golgi to ER traffic prote yes no 0.829 0.708 0.278 1e-18
Q0P5I8325 Golgi to ER traffic prote yes no 0.803 0.652 0.279 7e-18
Q7L5D6327 Golgi to ER traffic prote yes no 0.799 0.645 0.270 1e-17
Q9D1H7327 Golgi to ER traffic prote yes no 0.803 0.648 0.275 1e-17
B5KFI0328 Golgi to ER traffic prote yes no 0.803 0.646 0.275 1e-17
A4GWN3323 Golgi to ER traffic prote N/A no 0.803 0.656 0.279 2e-17
A4QNE0325 Golgi to ER traffic prote yes no 0.803 0.652 0.279 4e-17
Q6GLK9325 Golgi to ER traffic prote N/A no 0.803 0.652 0.275 7e-17
>sp|A0MT11|GET4_SALSA Golgi to ER traffic protein 4 homolog OS=Salmo salar GN=get4 PE=2 SV=1 Back     alignment and function desciption
 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 131/247 (53%), Gaps = 35/247 (14%)

Query: 20  KLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVS 79
           KL   V +G++Y A QMY+++  RY++  ++++A +L++ GA L    NQL   A+L++ 
Sbjct: 24  KLRASVEKGDYYEAHQMYRTLFFRYISQAKHTDARELMYNGAQLFFSYNQLNSAADLSML 83

Query: 80  FVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCS 139
            +E+L K +   ++E+L+ + K++ L      P++ E                 RV    
Sbjct: 84  VLESLEKSEAKVEDEDLEHLAKLFSLMD----PNSPE-----------------RV---- 118

Query: 140 SFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTI 199
           +F+  A+KWS   G+ K G+P+LH +LA  L+ E    + +   +HF+  ++ E  A  +
Sbjct: 119 AFVSRALKWSTG-GSGKLGAPKLHQLLAVTLWKEQ---NYSESRYHFLHSSDGEGCAQML 174

Query: 200 VNFMG-KCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQ---VENKQLQLQPSDLI 255
           V +   + +  E D+ VA+A+L +L L N   A+ +     ++   +E     +QP  L+
Sbjct: 175 VEYSAQRGFRSEVDMFVAQAVLQFLCLKNKNSASVVFSTYTQKHPSIEKDPPFVQP--LL 232

Query: 256 QFVFYVL 262
            F++++L
Sbjct: 233 NFIWFLL 239
Component of the BAT3 complex, a multiprotein complex involved in the post-translational delivery of tail-anchored (TA) membrane proteins to the endoplasmic reticulum membrane. TA membrane proteins, also named type II transmembrane proteins, contain a single C-terminal transmembrane region.
Salmo salar (taxid: 8030)
>sp|A1Z3X3|GET4_ORYLA Golgi to ER traffic protein 4 homolog OS=Oryzias latipes GN=get4 PE=2 SV=1 Back     alignment and function description
>sp|Q54TH4|GET4_DICDI Golgi to ER traffic protein 4 homolog OS=Dictyostelium discoideum GN=DDB_G0281815 PE=3 SV=1 Back     alignment and function description
>sp|Q0P5I8|GET4_BOVIN Golgi to ER traffic protein 4 homolog OS=Bos taurus GN=GET4 PE=2 SV=1 Back     alignment and function description
>sp|Q7L5D6|GET4_HUMAN Golgi to ER traffic protein 4 homolog OS=Homo sapiens GN=GET4 PE=1 SV=1 Back     alignment and function description
>sp|Q9D1H7|GET4_MOUSE Golgi to ER traffic protein 4 homolog OS=Mus musculus GN=Get4 PE=2 SV=2 Back     alignment and function description
>sp|B5KFI0|GET4_TAEGU Golgi to ER traffic protein 4 homolog OS=Taeniopygia guttata GN=GET4 PE=2 SV=1 Back     alignment and function description
>sp|A4GWN3|GET4_TAKRU Golgi to ER traffic protein 4 homolog OS=Takifugu rubripes GN=get4 PE=2 SV=1 Back     alignment and function description
>sp|A4QNE0|GET4_XENTR Golgi to ER traffic protein 4 homolog OS=Xenopus tropicalis GN=get4 PE=2 SV=1 Back     alignment and function description
>sp|Q6GLK9|GET4B_XENLA Golgi to ER traffic protein 4 homolog B OS=Xenopus laevis GN=get4-b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
224100845282 predicted protein [Populus trichocarpa] 1.0 0.936 0.731 1e-115
224109688322 predicted protein [Populus trichocarpa] 1.0 0.819 0.723 1e-114
255565818324 conserved hypothetical protein [Ricinus 1.0 0.814 0.715 1e-113
225449158322 PREDICTED: Golgi to ER traffic protein 4 1.0 0.819 0.727 1e-112
356576185323 PREDICTED: Golgi to ER traffic protein 4 1.0 0.817 0.678 1e-109
357443413323 hypothetical protein MTR_1g095910 [Medic 1.0 0.817 0.674 1e-109
358249304323 uncharacterized protein LOC100780059 [Gl 1.0 0.817 0.666 1e-106
147819146 391 hypothetical protein VITISV_021302 [Viti 0.943 0.636 0.712 1e-105
30697809324 uncharacterized protein [Arabidopsis tha 0.996 0.811 0.636 2e-99
297797313324 hypothetical protein ARALYDRAFT_496506 [ 0.996 0.811 0.640 4e-99
>gi|224100845|ref|XP_002312037.1| predicted protein [Populus trichocarpa] gi|222851857|gb|EEE89404.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 193/264 (73%), Positives = 232/264 (87%)

Query: 1   MSRQRPKRTALPPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAG 60
           MSRQRP +  LPPA+ NI+KLE ++NEGN+YGAQQMYKSISARYV+AQR+SEALD+LH+G
Sbjct: 1   MSRQRPGKAPLPPAEVNIEKLENVINEGNYYGAQQMYKSISARYVSAQRHSEALDILHSG 60

Query: 61  ACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDD 120
           ACLQLKN+Q+TCG+ELAV FVE LVK KV YD++ LDR+RKIY+ FPQIP+P +L +DDD
Sbjct: 61  ACLQLKNSQVTCGSELAVIFVETLVKAKVPYDDDVLDRIRKIYKTFPQIPLPQDLGEDDD 120

Query: 121 LHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMA 180
           + +L EALGAAK RVE C SFLKAAIKWS EFGA + GSPE+H MLAEY+YSESPELDM 
Sbjct: 121 MQQLNEALGAAKTRVECCLSFLKAAIKWSAEFGAHRNGSPEIHFMLAEYVYSESPELDMT 180

Query: 181 RVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKK 240
           RVS+HFVRGNNP+KFASTIVNFMGKCYPGE+DLA+ARAILMYLS+GN++DAN++MDE+KK
Sbjct: 181 RVSYHFVRGNNPKKFASTIVNFMGKCYPGEEDLAIARAILMYLSMGNLRDANFLMDELKK 240

Query: 241 QVENKQLQLQPSDLIQFVFYVLQT 264
             + K+  L  SDLIQF+ Y+L T
Sbjct: 241 HAQYKEHDLPQSDLIQFINYLLPT 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224109688|ref|XP_002315277.1| predicted protein [Populus trichocarpa] gi|222864317|gb|EEF01448.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565818|ref|XP_002523898.1| conserved hypothetical protein [Ricinus communis] gi|223536828|gb|EEF38467.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225449158|ref|XP_002278274.1| PREDICTED: Golgi to ER traffic protein 4 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|356576185|ref|XP_003556214.1| PREDICTED: Golgi to ER traffic protein 4 homolog [Glycine max] Back     alignment and taxonomy information
>gi|357443413|ref|XP_003591984.1| hypothetical protein MTR_1g095910 [Medicago truncatula] gi|355481032|gb|AES62235.1| hypothetical protein MTR_1g095910 [Medicago truncatula] gi|388501440|gb|AFK38786.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|358249304|ref|NP_001239772.1| uncharacterized protein LOC100780059 [Glycine max] gi|255636423|gb|ACU18550.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|147819146|emb|CAN78083.1| hypothetical protein VITISV_021302 [Vitis vinifera] Back     alignment and taxonomy information
>gi|30697809|ref|NP_201127.2| uncharacterized protein [Arabidopsis thaliana] gi|48958523|gb|AAT47814.1| At5g63220 [Arabidopsis thaliana] gi|51970596|dbj|BAD43990.1| putative protein [Arabidopsis thaliana] gi|332010336|gb|AED97719.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297797313|ref|XP_002866541.1| hypothetical protein ARALYDRAFT_496506 [Arabidopsis lyrata subsp. lyrata] gi|297312376|gb|EFH42800.1| hypothetical protein ARALYDRAFT_496506 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
TAIR|locus:2161917324 AT5G63220 "AT5G63220" [Arabido 0.996 0.811 0.614 1.3e-86
UNIPROTKB|A0MT11322 get4 "Golgi to ER traffic prot 0.344 0.282 0.326 6.8e-20
UNIPROTKB|A1Z3X3323 get4 "Golgi to ER traffic prot 0.337 0.275 0.325 2.3e-19
UNIPROTKB|F1MQU5273 GET4 "Golgi to ER traffic prot 0.344 0.333 0.336 1.9e-18
MGI|MGI:1914854327 Get4 "golgi to ER traffic prot 0.344 0.278 0.326 4.4e-18
UNIPROTKB|Q0P5I8325 GET4 "Golgi to ER traffic prot 0.344 0.28 0.336 5.2e-18
UNIPROTKB|Q7L5D6327 GET4 "Golgi to ER traffic prot 0.344 0.278 0.326 5.2e-18
UNIPROTKB|B5KFI0328 GET4 "Golgi to ER traffic prot 0.344 0.277 0.315 5.3e-18
RGD|1311660326 Get4 "golgi to ER traffic prot 0.344 0.279 0.326 5.5e-18
UNIPROTKB|A4GWN3323 get4 "Golgi to ER traffic prot 0.337 0.275 0.337 5.9e-18
TAIR|locus:2161917 AT5G63220 "AT5G63220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 164/267 (61%), Positives = 208/267 (77%)

Query:     1 MSRQRPKRTALPPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAG 60
             MSR+R KR  LPP QE+IDKL K++ EGN+YGA QMYKSISARYV AQR+SEALD+L +G
Sbjct:     1 MSRERIKRE-LPPVQEHIDKLRKVIEEGNYYGALQMYKSISARYVTAQRFSEALDILFSG 59

Query:    61 ACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVP-H--NXXX 117
             AC++L++  + CGA+LA+ FV+ LVK K   ++E LDR+R I++LFP++PVP H  +   
Sbjct:    60 ACIELEHGLVNCGADLAILFVDTLVKAKSPCNDETLDRIRCIFKLFPRVPVPPHLVDVSD 119

Query:   118 XXXXXXXXXXXGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPEL 177
                        G A+ RVE  +SFL+AAIKWS EFG P+TG PELH ML +YLY+E PEL
Sbjct:   120 DEDVQNLQESLGEARSRVENLTSFLRAAIKWSAEFGGPRTGYPELHAMLGDYLYTECPEL 179

Query:   178 DMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237
             DM R+S HFVR  +PEKFAS +VNFMG+CYPGEDDLA+ARA+LMYLS+GNMKDAN++MDE
Sbjct:   180 DMVRISRHFVRAEDPEKFASMLVNFMGRCYPGEDDLAIARAVLMYLSMGNMKDANFMMDE 239

Query:   238 VKKQVENKQLQLQPSDLIQFVFYVLQT 264
             +KKQ E K  +L  SDLIQF+ Y+L+T
Sbjct:   240 IKKQAETKNPELSESDLIQFISYLLET 266
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|A0MT11 get4 "Golgi to ER traffic protein 4 homolog" [Salmo salar (taxid:8030)] Back     alignment and assigned GO terms
UNIPROTKB|A1Z3X3 get4 "Golgi to ER traffic protein 4 homolog" [Oryzias latipes (taxid:8090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQU5 GET4 "Golgi to ER traffic protein 4 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1914854 Get4 "golgi to ER traffic protein 4 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P5I8 GET4 "Golgi to ER traffic protein 4 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q7L5D6 GET4 "Golgi to ER traffic protein 4 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B5KFI0 GET4 "Golgi to ER traffic protein 4 homolog" [Taeniopygia guttata (taxid:59729)] Back     alignment and assigned GO terms
RGD|1311660 Get4 "golgi to ER traffic protein 4 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A4GWN3 get4 "Golgi to ER traffic protein 4 homolog" [Takifugu rubripes (taxid:31033)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0049010201
hypothetical protein (282 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
pfam04190251 pfam04190, DUF410, Protein of unknown function (DU 2e-12
>gnl|CDD|217953 pfam04190, DUF410, Protein of unknown function (DUF410) Back     alignment and domain information 
 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 33/196 (16%)

Query: 45  VAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDR-VRKIY 103
           V  ++Y +A++LL++GA    +  Q    A+L    +E L K +VA  +  + R    I 
Sbjct: 1   VLQKKYEDAIELLYSGALFFFREKQYGSAADLTTYLLEVLEKAEVADSDSKVARLAELIN 60

Query: 104 ELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELH 163
           EL P  P     +                         +  AIKWS      K G P LH
Sbjct: 61  ELDPSEP---ERKK-----------------------CVDRAIKWS-TPSEGKYGDPALH 93

Query: 164 VMLAEYLYSESPELDMARVSFHFVRGNNPEKFAS--TIVNFMGKCYPGEDDLAVARAILM 221
            ++A+ L  E   ++ A    HF+ G++    A       +  + +  E D+ + RA+L 
Sbjct: 94  TLIAKKLVKED-NVESAE--NHFLLGDDGSSCAYFLLQEYWSFRGFEIEPDVFIVRAVLQ 150

Query: 222 YLSLGNMKDANYIMDE 237
           YL L N   A     E
Sbjct: 151 YLCLKNFPFAVSSFTE 166

This family of proteins is from Caenorhabditis elegans and has no known function. The protein has some GO references indicating that the protein has a positive regulation of growth rate and is involved in nematode larval development. Length = 251

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 264
KOG3024312 consensus Uncharacterized conserved protein [Funct 100.0
PF04190260 DUF410: Protein of unknown function (DUF410) ; Int 100.0
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 97.29
KOG1586288 consensus Protein required for fusion of vesicles 95.18
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 93.3
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 93.09
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 92.08
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 92.03
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 91.65
TIGR02917 899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 91.24
KOG1463 411 consensus 26S proteasome regulatory complex, subun 90.15
PRK10747398 putative protoheme IX biogenesis protein; Provisio 89.91
COG5159 421 RPN6 26S proteasome regulatory complex component [ 89.24
KOG3616 1636 consensus Selective LIM binding factor [Transcript 89.17
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 88.62
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 88.06
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 87.97
PRK11788389 tetratricopeptide repeat protein; Provisional 87.83
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 87.34
PLN03218 1060 maturation of RBCL 1; Provisional 83.67
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 83.61
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 83.33
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 82.33
PRK00794132 flbT flagellar biosynthesis repressor FlbT; Review 81.84
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 81.51
PRK12791131 flbT flagellar biosynthesis repressor FlbT; Review 80.86
>KOG3024 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-61  Score=436.53  Aligned_cols=225  Identities=28%  Similarity=0.415  Sum_probs=212.7

Q ss_pred             CchHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCC
Q 024660           12 PPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAY   91 (264)
Q Consensus        12 ~~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~   91 (264)
                      .+++|++.|++++|+-|+||||||||||++|||+++|+|++|++|+++||+.|++++|.+||+||+++++|||+++.+..
T Consensus         4 ~~~~R~e~kl~a~~~~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad   83 (312)
T KOG3024|consen    4 FTLQRVEGKLRASIELGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVAD   83 (312)
T ss_pred             hHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             ChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHH
Q 024660           92 DNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLY  171 (264)
Q Consensus        92 ~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~  171 (264)
                      +..++.|+.+++..+++++|+|                         ++||++||+||++.|++++|||+||.++|.++|
T Consensus        84 ~~~~~anl~~ll~e~~~~eper-------------------------~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~  138 (312)
T KOG3024|consen   84 SLLKVANLAELLGEADPSEPER-------------------------KTFVRRAIKWSKEFGEGKYGHPELHALLADKLW  138 (312)
T ss_pred             hHHHHHHHHHHHhhcCCCccHH-------------------------HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence            8889999999999999999987                         999999999999998899999999999999999


Q ss_pred             hcCCCcChHhhhhhhhcCCChHHHHH-HHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHH----------
Q 024660          172 SESPELDMARVSFHFVRGNNPEKFAS-TIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKK----------  240 (264)
Q Consensus       172 ~e~~~~~~~~A~~Hfl~~~d~~~~a~-~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~----------  240 (264)
                      +++   ++++|++||++|+|++.||. +++.|+.+++.+|.|+|++|+||||||+.|..+|...++.|++          
T Consensus       139 ~e~---~~~~a~~HFll~~d~s~~a~~ll~y~~~r~f~~e~d~f~~~aVlq~L~len~~~A~~s~t~yt~~f~~k~~p~~  215 (312)
T KOG3024|consen  139 TED---NVEEARRHFLLSEDGSKFAYMLLEYSMSRGFKSEPDVFYVQAVLQYLCLENDSSAARSFTTYTSMFNMKDFPMD  215 (312)
T ss_pred             hcc---cHHHHHhHhhhcCChHHHHHHHHHHHhhcccccCchHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccccch
Confidence            999   99999999999999999999 6677999999999999999999999999999999999999999          


Q ss_pred             --Hhhhh--hcCCCCCchhHHHHHHhcC
Q 024660          241 --QVENK--QLQLQPSDLIQFVFYVLQT  264 (264)
Q Consensus       241 --~~~~~--~~~~~~~PLLNFl~~Ll~t  264 (264)
                        .+.+.  .+.|+.+|||||+||||.|
T Consensus       216 e~~~~~~~k~~~~~~~pllNFl~~Ll~t  243 (312)
T KOG3024|consen  216 EIKHKAGTKNPFPFEYPLLNFLHFLLET  243 (312)
T ss_pred             hhcccccccCCCccccchHHHHHHHHHH
Confidence              44322  3356689999999999976

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
3lpz_A336 Crystal Structure Of C. Therm. Get4 Length = 336 5e-09
2wpv_A312 Crystal Structure Of S. Cerevisiae Get4-Get5 Comple 1e-07
3lku_A292 Crystal Structure Of S. Cerevisiae Get4 In Complex 2e-07
>pdb|3LPZ|A Chain A, Crystal Structure Of C. Therm. Get4 Length = 336 Back     alignment and structure 
Iteration: 1

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 35/221 (15%)
Query: 18  IDKLEKIVNEGN---FYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGA 74
           I +L++ + EG     Y A Q  + ++ARY     ++ A+D+L + +   L++ Q   G 
Sbjct: 16  IARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75
Query: 75  ELAVSFVEALVKGKVAYDNENLDRVRKIYELF-PQIPVPHNXXXXXXXXXXXXXXGAAKL 133
           +LAV  V+   +     D  +  ++     LF P  PV                      
Sbjct: 76  DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKR------------------- 116
Query: 134 RVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGN--N 191
                  F+K  I WS +FG    G PELH ++   LY E  E + A    H V G   +
Sbjct: 117 -------FVKEMIDWSKKFGDYPAGDPELHHVVGT-LYVEEGEFEAAEK--HLVLGTKES 166
Query: 192 PEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDAN 232
           PE  A     +  +       L  ARA+L YL + N++ AN
Sbjct: 167 PEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAAN 207
>pdb|2WPV|A Chain A, Crystal Structure Of S. Cerevisiae Get4-Get5 Complex Length = 312 Back     alignment and structure
>pdb|3LKU|A Chain A, Crystal Structure Of S. Cerevisiae Get4 In Complex With An N-Terminal Fragment Of Get5 Length = 292 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
3lpz_A336 GET4 (YOR164C homolog); protein targeting, tail-an 6e-58
2wpv_A312 GET4, UPF0363 protein YOR164C; golgi-ER traffickin 5e-57
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Length = 336 Back     alignment and structure
 Score =  187 bits (475), Expect = 6e-58
 Identities = 58/280 (20%), Positives = 98/280 (35%), Gaps = 48/280 (17%)

Query: 5   RPKRTALPPAQENIDKLEKIVNEGN---FYGAQQMYKSISARYVAAQRYSEALDLLHAGA 61
                     +  I +L++ + EG     Y A Q  + ++ARY     ++ A+D+L + +
Sbjct: 3   HHHHHHSNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS 62

Query: 62  CLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDL 121
              L++ Q   G +LAV  V+   +     D  +  ++     LF               
Sbjct: 63  QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQP------------- 109

Query: 122 HELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMAR 181
                              F+K  I WS +FG    G PELH ++      E  E + A 
Sbjct: 110 ------------GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEG-EFEAAE 156

Query: 182 VSFHFVRGN--NPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVK 239
              H V G   +PE  A     +  +       L  ARA+L YL + N++ AN       
Sbjct: 157 --KHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214

Query: 240 KQVENKQLQLQPSD---------------LIQFVFYVLQT 264
             +      L   +               L+ F+  +L +
Sbjct: 215 SALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLS 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
3lpz_A336 GET4 (YOR164C homolog); protein targeting, tail-an 100.0
2wpv_A312 GET4, UPF0363 protein YOR164C; golgi-ER traffickin 100.0
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 97.7
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 97.48
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 96.78
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 96.57
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 96.48
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 96.43
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 96.21
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 95.79
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 95.67
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 95.66
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 95.44
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 95.35
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 95.17
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 95.12
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 95.01
3sf4_A 406 G-protein-signaling modulator 2; tetratricopeptide 94.92
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 94.82
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 94.68
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 94.62
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 94.52
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 94.42
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 94.37
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 94.3
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 94.25
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 94.0
3q15_A378 PSP28, response regulator aspartate phosphatase H; 93.97
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 93.89
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 93.88
3u3w_A293 Transcriptional activator PLCR protein; ternary co 93.56
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 93.12
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 93.02
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 92.88
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 92.81
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 92.52
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 92.44
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 92.39
3u4t_A272 TPR repeat-containing protein; structural genomics 92.28
3q15_A378 PSP28, response regulator aspartate phosphatase H; 91.98
4eqf_A365 PEX5-related protein; accessory protein, tetratric 91.89
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 91.76
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 91.69
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 91.49
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 91.37
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 91.27
3u3w_A293 Transcriptional activator PLCR protein; ternary co 90.35
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 90.18
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 89.52
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 89.16
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 89.14
2y4t_A 450 DNAJ homolog subfamily C member 3; chaperone, endo 88.96
2y4t_A 450 DNAJ homolog subfamily C member 3; chaperone, endo 88.92
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 88.81
4eqf_A365 PEX5-related protein; accessory protein, tetratric 88.53
1w3b_A 388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 88.52
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 88.5
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 88.25
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 88.15
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 88.13
3txn_A 394 26S proteasome regulatory complex subunit P42B; PC 87.88
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 87.36
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 87.36
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 87.28
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 87.12
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 86.76
3q49_B137 STIP1 homology and U box-containing protein 1; E3 85.77
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 85.18
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 85.15
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 84.9
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 84.88
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 84.55
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 84.32
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 83.85
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 83.7
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 83.69
2c2l_A 281 CHIP, carboxy terminus of HSP70-interacting protei 83.26
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 83.22
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 82.85
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 82.62
1hz4_A 373 MALT regulatory protein; two-helix bundles, helix 82.35
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 81.68
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 80.86
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 80.08
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Back     alignment and structure
Probab=100.00  E-value=6.8e-74  Score=535.10  Aligned_cols=226  Identities=24%  Similarity=0.352  Sum_probs=215.1

Q ss_pred             CCchHHHHHHHHHHhccCCh---hHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhC
Q 024660           11 LPPAQENIDKLEKIVNEGNF---YGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKG   87 (264)
Q Consensus        11 ~~~~~r~l~rl~~~i~~G~~---YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~   87 (264)
                      +.+++||++||+++|++|+|   |||||||||+++||++++||++|+||||+||+.||++||++||+||+++|||||+++
T Consensus         9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~   88 (336)
T 3lpz_A            9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQA   88 (336)
T ss_dssp             -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc
Confidence            34899999999999999999   999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHH
Q 024660           88 KVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLA  167 (264)
Q Consensus        88 ~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la  167 (264)
                      +++||+++++||++|++.||+++|+|                         ++||++||+||+++|++++|||+||+++|
T Consensus        89 ~~~~~~~~~~rL~~L~~~~~~~~p~r-------------------------~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig  143 (336)
T 3lpz_A           89 GQRVDGASRGKLLGCLRLFQPGEPVR-------------------------KRFVKEMIDWSKKFGDYPAGDPELHHVVG  143 (336)
T ss_dssp             TCCCCHHHHHHHHHHHTTSCTTCHHH-------------------------HHHHHHHHHHHHHHSSCTTCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCcHH-------------------------HHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence            99999999999999999999999887                         99999999999999999999999999999


Q ss_pred             HHHHhcCCCcChHhhhhhhhcCCCh--HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhh
Q 024660          168 EYLYSESPELDMARVSFHFVRGNNP--EKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENK  245 (264)
Q Consensus       168 ~~~~~e~~~~~~~~A~~Hfl~~~d~--~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~~  245 (264)
                      ++||+|+   +|++|++|||+|+|+  +.||+||++|+++++|+|.|+|++||||||||++|+++|+++++.|++++++.
T Consensus       144 ~~~~~e~---~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~  220 (336)
T 3lpz_A          144 TLYVEEG---EFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVED  220 (336)
T ss_dssp             HHHHHTT---CHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccC---CHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhc
Confidence            9999999   999999999999986  59999999999999999999999999999999999999999999999988543


Q ss_pred             hcC---------------CCCCchhHHHHHHhcC
Q 024660          246 QLQ---------------LQPSDLIQFVFYVLQT  264 (264)
Q Consensus       246 ~~~---------------~~~~PLLNFl~~Ll~t  264 (264)
                      .+.               +|++|||||+||||+|
T Consensus       221 ~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt  254 (336)
T 3lpz_A          221 NKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLS  254 (336)
T ss_dssp             CTTSCCEESCC--CCCEECTTCHHHHHHHHHHHH
T ss_pred             CCCccccccccCCcccccCCCCchHHHHHHHHHH
Confidence            221               5679999999999975
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 97.15
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 95.25
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 90.31
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 88.71
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 85.22
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 83.03
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.0061  Score=51.14  Aligned_cols=212  Identities=15%  Similarity=0.056  Sum_probs=131.5

Q ss_pred             chHHHHHHHHHHhccC-------------ChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHH
Q 024660           13 PAQENIDKLEKIVNEG-------------NFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVS   79 (264)
Q Consensus        13 ~~~r~l~rl~~~i~~G-------------~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~l   79 (264)
                      .++.+|++.+.+...+             +|=||.-.|.-..+=|..+|+|++|++...+.+...-+.+....+++...-
T Consensus         3 ~~~~~l~~aek~~~~~~~~~~~~~~~~~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~   82 (290)
T d1qqea_           3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVE   82 (290)
T ss_dssp             CHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCcchhHHHHhcCCccccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3677788877777643             456788899999999999999999999999888888777777777777777


Q ss_pred             HHHHHhhCCCCCC-hhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCC
Q 024660           80 FVEALVKGKVAYD-NENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTG  158 (264)
Q Consensus        80 lvevl~~~~~~~~-~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~G  158 (264)
                      +-.+|.+.+-+-. .+...+.+++....+....     ...-...+-+.-.......++-..+..+|+.+....+. +.-
T Consensus        83 ~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~-~~~  156 (290)
T d1qqea_          83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR-----GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VAL  156 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh-----HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc-hhh
Confidence            7788887763322 2344566666554421100     00011111111111111223346777888888765432 111


Q ss_pred             CHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhh-cCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660          159 SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGK-CYPGEDDLAVARAILMYLSLGNMKDANYIMDE  237 (264)
Q Consensus       159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~-~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~  237 (264)
                      ....+..+|.+|.+.|   +|.+|..+|-.         .+-..... .......-...++++.+++.++...|...++.
T Consensus       157 ~~~~~~~la~~~~~~g---~y~~A~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~  224 (290)
T d1qqea_         157 SNKCFIKCADLKALDG---QYIEASDIYSK---------LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE  224 (290)
T ss_dssp             HHHHHHHHHHHHHHTT---CHHHHHHHHHH---------HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred             hhhHHHHHHHHHHHcC---hHHHHHHHHHH---------HHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            2345777899999999   99999987632         11111010 11122233455677788889999999888887


Q ss_pred             HHHHh
Q 024660          238 VKKQV  242 (264)
Q Consensus       238 f~~~~  242 (264)
                      +.+..
T Consensus       225 ~~~~~  229 (290)
T d1qqea_         225 GQSED  229 (290)
T ss_dssp             GGCC-
T ss_pred             HHHhC
Confidence            76543
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure