Citrus Sinensis ID: 024699

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MAARNHISRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGGSAYGLLNGCPDMRYPGGAFDNGYGGAWGHYDKHGPPRR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maarnhisrhpdsargfrdgprpvltrglapmhfhpmtlEEEIEIQRREMHRIISenrhaiddnTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRacglggsaygllngcpdmrypggafdngyggawghydkhgpprr
Flexible Loop (DISEMBL)
maarnhisrhpdsargfrdgprPVLTRglapmhfhpmTLEEEIEIQRREMHRIISEnrhaiddntHLQRELTASKDEIHRLGQIipklradkeaHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVqklnssrqelttqikgltkdvnRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGGSAYGLLNGCPDMRYPGGAFDNGYGGAWGHYDKHGPPRR
Low Complexity Region (SEG)
MAARNHISRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGGSAYGLLNGCPDMRYPGGAFDNGYGGAWGHYDKHGPPRR
Disordered region (IsUnstruct)
*********************************F*******************************************IHRLGQIIPKLR*******RELFDRGLKLEVEL*********VV***********************************QLIAMRADIDGIRSELV********************************EIEKLRAELLNTERRACGLGGSAYGLLNGCPDMRYPGGAFDNGYGGAWGHY********
Disordered Region (DISOPRED)
************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
***************GFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGGSAYGLLNGCPDMRYPGGAFDNGYGGAWGHYDKHGPPRR
Disordered Region (DISPRO)
******************DGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGGSAYGLLNGCPDMRYPGGAFDNGYGGAWGHYDKH*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAARNHISRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRADIDGIRSELVEARRAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACGLGGSAYGLLNGCPDMRYPGGAFDNGYGGAWGHYDKHGPPRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
225423975	265	PREDICTED: uncharacterized protein LOC10	1.0	0.996	0.713	2e-93
449446201	261	PREDICTED: uncharacterized protein LOC10	0.973	0.984	0.651	6e-89
358344687	283	hypothetical protein MTR_040s0047 [Medic	0.928	0.865	0.476	2e-56
147810266	279	hypothetical protein VITISV_027853 [Viti	0.973	0.921	0.482	4e-56
359482838	282	PREDICTED: uncharacterized protein LOC10	0.977	0.914	0.475	9e-56
357454679	271	hypothetical protein MTR_2g100240 [Medic	0.867	0.845	0.482	2e-55
356556722	286	PREDICTED: uncharacterized protein LOC10	0.837	0.772	0.502	3e-53
307136246	175	hypothetical protein [Cucumis melo subsp	0.662	1.0	0.634	1e-52
148909320	288	unknown [Picea sitchensis] gi|224286475|	0.954	0.875	0.446	9e-51
363806838	285	uncharacterized protein LOC100787621 [Gl	0.821	0.761	0.486	2e-50

>gi|225423975|ref|XP_002282562.1| PREDICTED: uncharacterized protein LOC100242187 isoform 1 [Vitis vinifera] gi|147801663|emb|CAN76874.1| hypothetical protein VITISV_007099 [Vitis vinifera] gi|297737820|emb|CBI27021.3| unnamed protein product [Vitis vinifera]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 189/265 (71%), Positives = 221/265 (83%), Gaps = 1/265 (0%)

Query: 1   MAARNHISRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHA 60
           MA RN + R+P+  RGFRDGP PVL RG  P+  HP+ +EEE+E+Q RE+ RI++ENRH 
Sbjct: 1   MAGRNRMPRNPNGFRGFRDGPPPVLNRGPGPLPLHPVAMEEELELQHRELQRIVAENRHV 60

Query: 61  IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEV 120
           IDDNT LQ EL A+KD+IHRLGQIIPKLRAD+E   REL DRGLKLE +LRA EP+R EV
Sbjct: 61  IDDNTMLQSELAAAKDDIHRLGQIIPKLRADREVQARELIDRGLKLEADLRAVEPLRTEV 120

Query: 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180
           +QLRAE QKLN+SRQ+L+ Q++GLT+DV RL+AEN+QLIAMRADID +R EL EARRAFE
Sbjct: 121 IQLRAEAQKLNASRQDLSAQVQGLTQDVARLQAENQQLIAMRADIDRMRKELAEARRAFE 180

Query: 181 FEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRA-CGLGGSAYGLLNGCPDMR 239
           +EKKANEEQ+EQKQAME NLISMAREIEKLRA+ LNT+RRA    GG  YGLLNG P+MR
Sbjct: 181 YEKKANEEQLEQKQAMEKNLISMAREIEKLRADQLNTDRRARGLGGGGGYGLLNGSPEMR 240

Query: 240 YPGGAFDNGYGGAWGHYDKHGPPRR 264
           YPGGAF +GYGG WG YDK GPPRR
Sbjct: 241 YPGGAFGDGYGGVWGPYDKRGPPRR 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446201|ref|XP_004140860.1| PREDICTED: uncharacterized protein LOC101218774 [Cucumis sativus] gi|449512724|ref|XP_004164125.1| PREDICTED: uncharacterized protein LOC101226085 [Cucumis sativus]

 Score =  333 bits (853), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 168/258 (65%), Positives = 209/258 (81%), Gaps = 1/258 (0%)

Query: 1   MAARNHISRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHA 60
           MA RN  SRH D  R  RD PR  + R  AP+  HP  LEEE+E+QRREM RIIS+NR  
Sbjct: 1   MAGRNRSSRHIDGYRVSRDVPRSYIERVPAPLPIHPAALEEELELQRREMQRIISDNRMV 60

Query: 61  IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEV 120
           IDDNT LQREL+A+K+EIHRL Q+IPK+ ++KE+ +REL +RGLKLE ELRASEP+++EV
Sbjct: 61  IDDNTVLQRELSAAKEEIHRLNQVIPKIVSEKESQSRELLERGLKLEAELRASEPLKSEV 120

Query: 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180
           +QLRAE+QKLN+ RQ+L+ Q++ LTKDVNRL+AEN+QL +MRAD+DG+  EL+EARRA+E
Sbjct: 121 LQLRAEIQKLNTLRQDLSAQVQSLTKDVNRLQAENQQLNSMRADMDGLHKELIEARRAYE 180

Query: 181 FEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGGSAYGLLNGCPDMRY 240
           +EKKANEEQIEQKQ+ME NL+SMAREIEKLRAE LN E RA GLG   YG+LN  P+MRY
Sbjct: 181 YEKKANEEQIEQKQSMEKNLVSMAREIEKLRAEKLNIE-RARGLGAENYGILNRSPEMRY 239

Query: 241 PGGAFDNGYGGAWGHYDK 258
            GGA+ + YG +W  Y+K
Sbjct: 240 AGGAYGSSYGSSWAPYEK 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344687|ref|XP_003636419.1| hypothetical protein MTR_040s0047 [Medicago truncatula] gi|355502354|gb|AES83557.1| hypothetical protein MTR_040s0047 [Medicago truncatula]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 123/258 (47%), Positives = 180/258 (69%), Gaps = 13/258 (5%)

Query: 1   MAARNHISRHP--DSARGF-RDGPRPVLTRGLAPM---HF--HPMTLEEEIEIQRREMHR 52
           M +R+ + R P   S RG+  +GP     RG  PM   H   HP  LEEE+E+Q  EM R
Sbjct: 1   MGSRHRVHREPPMSSRRGYPSEGP---YARGPPPMPRQHIPPHPALLEEELEVQHAEMRR 57

Query: 53  IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA 112
           ++++NR  IDD   LQR+L A+K+E+HR+   I  +RA+ E H+REL D+ +KLE +LR+
Sbjct: 58  LVADNRRLIDDRMTLQRDLAAAKEELHRMNLAIGDIRAEHEMHSRELVDKNMKLESDLRS 117

Query: 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL 172
           +EP++ EV+QLRAEVQKL+S +QEL+ +++ LTKDV RL+++N+Q+ +MR++IDG+  EL
Sbjct: 118 TEPLKNEVIQLRAEVQKLSSIKQELSGKVQTLTKDVARLQSDNQQIPSMRSEIDGLHQEL 177

Query: 173 VEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGGSAYGLL 232
           + AR   ++EKKAN E +EQ+Q+ME N++SMARE+EKLRAEL + + R  G  G  YG  
Sbjct: 178 MRARTMVDYEKKANMEFMEQRQSMEKNMVSMAREVEKLRAELASMDGRHWG-AGLPYGTN 236

Query: 233 NGCPDMRYPGGAFDNGYG 250
            G P+  +P   + +GYG
Sbjct: 237 FGSPEGGFP-PPYADGYG 253

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810266|emb|CAN71449.1| hypothetical protein VITISV_027853 [Vitis vinifera]

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 127/263 (48%), Positives = 176/263 (66%), Gaps = 6/263 (2%)

Query: 1   MAARNHISRHP-DSARGFR-DGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENR 58
           MA RN   R   D  RGF  +GP               M LEEE E+Q  EM R+  ENR
Sbjct: 1   MAGRNRFPRDAFDGRRGFPPEGPFLRGPPLPRLPPHPAM-LEEEFEMQHAEMRRLFGENR 59

Query: 59  HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRA 118
             ++D   LQ+EL  +K+E+HR+   I  +RA++E H+REL ++GLKLE +LRA+EP++ 
Sbjct: 60  RLVEDRMALQQELGVAKEELHRMNLAIGDIRAEQELHSRELIEKGLKLEADLRATEPLKN 119

Query: 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178
           E VQLR+E+QKLN+ RQ+L  Q++ L+++V RL+A+NKQ+  +RA+I+G+  EL+ AR A
Sbjct: 120 EAVQLRSEIQKLNNIRQDLAGQVQNLSQEVARLQADNKQIPLLRAEIEGLHQELMRARTA 179

Query: 179 FEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGGSAYGLLNGCPDM 238
            ++EKK N E +EQ+QAME NL+SMARE+EKLRAEL +T+ R  G GGS YG+  G PD 
Sbjct: 180 VDYEKKGNIELMEQRQAMEKNLVSMAREVEKLRAELASTDARPWGAGGS-YGMKFGSPDG 238

Query: 239 RYPGGAFDNGYGGAWGHYDKHGP 261
            +P   + +GYG   G  DK GP
Sbjct: 239 GFP-APYGDGYGAHLGAADK-GP 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482838|ref|XP_002278937.2| PREDICTED: uncharacterized protein LOC100253153 [Vitis vinifera] gi|297743072|emb|CBI35939.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 126/265 (47%), Positives = 176/265 (66%), Gaps = 7/265 (2%)

Query: 1   MAARNHISRHP-DSARGFR-DGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENR 58
           MA RN   R   D  RGF  +GP               M LEEE E+Q  EM R+  ENR
Sbjct: 1   MAGRNRFPRDAFDGRRGFPPEGPFLRGPPLPRLPPHPAM-LEEEFEMQHAEMRRLFGENR 59

Query: 59  HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRA 118
             ++D   LQ+EL  +K+E+HR+   I  +RA++E H+REL ++GLKLE +LRA+EP++ 
Sbjct: 60  RLVEDRMALQQELGVAKEELHRMNLAIGDIRAEQELHSRELIEKGLKLEADLRATEPLKN 119

Query: 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178
           E VQLR+E+QKLN+ RQ+L  Q++ L+++V RL+A+NKQ+  +RA+I+G+  EL+ AR A
Sbjct: 120 EAVQLRSEIQKLNNIRQDLAGQVQNLSQEVARLQADNKQIPLLRAEIEGLHQELMRARTA 179

Query: 179 FEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLG--GSAYGLLNGCP 236
            ++EKK N E +EQ+QAME NL+SMARE+EKLRAEL +T+ R  G G  G +YG+  G P
Sbjct: 180 VDYEKKGNIELMEQRQAMEKNLVSMAREVEKLRAELASTDARPWGAGISGGSYGMKFGSP 239

Query: 237 DMRYPGGAFDNGYGGAWGHYDKHGP 261
           D  +P   + +GYG   G  DK GP
Sbjct: 240 DGGFP-APYGDGYGAHLGAADK-GP 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454679|ref|XP_003597620.1| hypothetical protein MTR_2g100240 [Medicago truncatula] gi|124360403|gb|ABN08416.1| Protein kinase PKN/PRK1, effector [Medicago truncatula] gi|355486668|gb|AES67871.1| hypothetical protein MTR_2g100240 [Medicago truncatula]

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 113/234 (48%), Positives = 169/234 (72%), Gaps = 5/234 (2%)

Query: 17  FRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKD 76
           +  GP P+  + + P   HP  LEEE+E+Q  EM R++++NR  IDD   LQR+L A+K+
Sbjct: 13  YARGPPPMPRQHIPP---HPALLEEELEVQHAEMRRLVADNRRLIDDRMTLQRDLAAAKE 69

Query: 77  EIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQE 136
           E+HR+   I  +RA+ E H+REL D+ +KLE +LR++EP++ EV+QLRAEVQKL+S +QE
Sbjct: 70  ELHRMNLAIGDIRAEHEMHSRELVDKNMKLESDLRSTEPLKNEVIQLRAEVQKLSSIKQE 129

Query: 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAM 196
           L+ +++ LTKDV RL+++N+Q+ +MR++IDG+  EL+ AR   ++EKKAN E +EQ+Q+M
Sbjct: 130 LSGKVQTLTKDVARLQSDNQQIPSMRSEIDGLHQELMRARTMVDYEKKANMEFMEQRQSM 189

Query: 197 ENNLISMAREIEKLRAELLNTERRACGLGGSAYGLLNGCPDMRYPGGAFDNGYG 250
           E N++SMARE+EKLRAEL + + R  G  G  YG   G P+  +P   + +GYG
Sbjct: 190 EKNMVSMAREVEKLRAELASMDGRHWG-AGLPYGTNFGSPEGGFP-PPYADGYG 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556722|ref|XP_003546672.1| PREDICTED: uncharacterized protein LOC100809038 [Glycine max]

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/227 (50%), Positives = 164/227 (72%), Gaps = 6/227 (2%)

Query: 38  TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
            LEEE+E Q  EM R++++NR  IDD   LQR+L A+K+E+HR+   I  +RA+ EAH+R
Sbjct: 43  VLEEELEFQHAEMRRLVADNRRLIDDRMALQRDLGAAKEELHRMNLAIGDIRAEHEAHSR 102

Query: 98  ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157
           EL ++G+K+E +LRA+EP++ EV+QLR+EV+KLN+ +QELT +++ LT+DV RL+A+N+Q
Sbjct: 103 ELVEKGMKMEADLRANEPLKNEVMQLRSEVKKLNNLKQELTGKVQTLTQDVARLQADNQQ 162

Query: 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217
           +  MRA IDG+  EL+ AR   ++EKKAN E +EQ+Q+ME NL+SMARE+EKLRAEL + 
Sbjct: 163 IPMMRAKIDGLHQELMHARTMVDYEKKANMEFMEQRQSMEKNLVSMAREVEKLRAELASA 222

Query: 218 ERR--ACGLGGSAYGLLNGCPDMRYPGGAFDNGYGGA-WGHYDKHGP 261
           + R    G+ G  YG   G P+  +P   + +GYG    G  DK GP
Sbjct: 223 DSRHWGAGMSGGPYGTKFGSPE-GFP-APYADGYGSVHLGAADK-GP 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136246|gb|ADN34079.1| hypothetical protein [Cucumis melo subsp. melo]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/175 (63%), Positives = 141/175 (80%)

Query: 1   MAARNHISRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHA 60
           MA RN  SRH D  R  RD PR  + R  AP+  HP  LEEE+E+QRREM RIIS+NR  
Sbjct: 1   MAGRNRSSRHIDGYRVSRDVPRSYIERVPAPLPIHPAALEEELELQRREMQRIISDNRMV 60

Query: 61  IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEV 120
           IDDNT LQREL+A+K+EIHRL Q+IPK+ ++KE+ +REL +RGLKLE ELRASEP+++EV
Sbjct: 61  IDDNTVLQRELSAAKEEIHRLNQVIPKIVSEKESQSRELLERGLKLEAELRASEPLKSEV 120

Query: 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175
           +QLRAE+QKLN+ RQ+L+ Q++ LTKDV RL+AEN+QL +MRADIDG+  EL+EA
Sbjct: 121 LQLRAEIQKLNTLRQDLSAQVQSLTKDVTRLQAENQQLNSMRADIDGLHKELIEA 175

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148909320|gb|ABR17759.1| unknown [Picea sitchensis] gi|224286475|gb|ACN40944.1| unknown [Picea sitchensis]

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 129/289 (44%), Positives = 177/289 (61%), Gaps = 37/289 (12%)

Query: 1   MAARNHISRHP---------DSARGFRDGP-RPVLTRGLAPMHFHPMTLEEEIEIQRREM 50
           MA RN + RH                RDGP RP    G  P   HP  LEEE+E+Q  E+
Sbjct: 1   MAGRNRLPRHALNGGPRGFPPGPGPIRDGPYRP----GPLP---HPARLEEELELQYEEI 53

Query: 51  HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVEL 110
            R+++ENR     +  L+REL  ++DE+HRL QI+  ++ DKE   R+L D+ + LE EL
Sbjct: 54  QRLLAENRRLAATHVDLRRELAGAQDELHRLNQIVGNVKVDKERQARDLVDKCMNLEAEL 113

Query: 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS 170
           R+ EP+RAEV+QLRA+ QKL++SRQEL+ Q++ L +D+ R +A+ +Q+ A+RA++D +R 
Sbjct: 114 RSVEPLRAEVMQLRADTQKLSASRQELSAQVQALNQDLTRAQADLQQVPALRAELDSLRQ 173

Query: 171 ELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRA---CGLGGS 227
           EL+ +R A E+EKKAN EQ EQ+QAME NLISMARE+EKLRAEL N+E+RA    G  G 
Sbjct: 174 ELIRSRTAIEYEKKANSEQFEQRQAMEKNLISMAREVEKLRAELTNSEKRAWATAGTPGG 233

Query: 228 AYGLLNGCPDMRYPG------------GAFDNG--YGGA---WGHYDKH 259
            YG   G   + Y G            G  + G  YG     WG ++K 
Sbjct: 234 PYGTKLGTASVGYSGPYAEAYGLHLSQGGVEKGSQYGSGSDPWGSFEKQ 282

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806838|ref|NP_001242546.1| uncharacterized protein LOC100787621 [Glycine max] gi|255645257|gb|ACU23126.1| unknown [Glycine max]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 112/230 (48%), Positives = 163/230 (70%), Gaps = 13/230 (5%)

Query: 38  TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
            LEEE+E Q  EM R++++NR  IDD   LQR+L A+K+E+HR+   I  +RA+ EAH+R
Sbjct: 43  VLEEELEFQHAEMRRLVADNRRLIDDRMALQRDLGAAKEELHRMNLAIGDIRAEHEAHSR 102

Query: 98  ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157
           EL ++G+K+E +LRA+EP++ EV+QLR+EV+KLN+ +QELT +++ LT+DV RL+A+N+Q
Sbjct: 103 ELVEKGMKMEADLRANEPLKNEVMQLRSEVKKLNNLKQELTGKVQTLTQDVARLQADNQQ 162

Query: 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217
           +  MRA+IDG+  EL+ AR   ++EKKAN E +EQ+Q+ME NL+SMARE+EKLRAEL + 
Sbjct: 163 IPMMRAEIDGLHQELMRARTMVDYEKKANMEFMEQRQSMEKNLVSMAREVEKLRAELASA 222

Query: 218 ERR------ACGLGGSAYGLLNGCPDMRYPGGAFDNGYGGAWGHYDKHGP 261
           + R      + G  G+ +G   G P        + +GYG   G  DK GP
Sbjct: 223 DSRHWGGGMSGGPYGTKFGSPEGFP------APYADGYGVHLGAADK-GP 265

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:2035751	283	AT1G55170 "AT1G55170" [Arabido	0.977	0.911	0.413	2.8e-43
TAIR|locus:2089616	331	AT3G14750 "AT3G14750" [Arabido	0.943	0.752	0.339	1.9e-35
TAIR|locus:2033681	359	AT1G67170 "AT1G67170" [Arabido	0.886	0.651	0.313	1.7e-27
TAIR|locus:2060848	288	AT2G30120 [Arabidopsis thalian	0.825	0.756	0.301	1.8e-25
TAIR|locus:2156146	238	AT5G61920 "AT5G61920" [Arabido	0.791	0.878	0.285	1.2e-19
UNIPROTKB|Q3A9A0	155	CHY_2490 "Conserved domain pro	0.371	0.632	0.284	2.6e-07
TIGR_CMR|CHY_2490	155	CHY_2490 "conserved domain pro	0.371	0.632	0.284	2.6e-07
UNIPROTKB|Q6V4L1	398	Q6V4L1 "M protein" [Streptococ	0.655	0.434	0.263	6.5e-07
UNIPROTKB|Q6V4L4	397	Q6V4L4 "M protein" [Streptococ	0.659	0.438	0.256	8.4e-07
UNIPROTKB|Q6V4L9	391	Q6V4L9 "M protein" [Streptococ	0.659	0.445	0.256	1.1e-06

TAIR|locus:2035751 AT1G55170 "AT1G55170" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 113/273 (41%), Positives = 165/273 (60%)

Query:     1 MAARNHISRH-PDSARGFRDGP--RPVLTRGLAPMHFHPMTLEEEIEIQ----RR---EM 50
             M+ RN I R   DS    RD P  RP L RG   +   P +L E+++IQ    RR   E+
Sbjct:     1 MSGRNRIHRDIRDSYHDHRDLPPERPFL-RGPPLLQPPPPSLLEDLQIQEGEIRRQDAEI 59

Query:    51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVEL 110
              R++S+N    DD   L+REL A+K+E+HR+  +I  LRA+++   RE  ++  KLE ++
Sbjct:    60 RRLLSDNHGLADDRMVLERELVAAKEELHRMNLMISDLRAEQDLQLREFSEKRHKLEGDV 119

Query:   111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS 170
             RA E  + E  QLR EVQKL+  ++EL+  ++ L KD+ +L+++NKQ+  MRA++  ++ 
Sbjct:   120 RAMESYKKEASQLRGEVQKLDEIKRELSGNVQLLRKDLAKLQSDNKQIPGMRAEVKDLQK 179

Query:   171 ELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGGSAYG 230
             EL+ AR A E+EKK   E +EQ+Q ME N++SMARE+EKLRAEL   + R  G GGS YG
Sbjct:   180 ELMHARDAIEYEKKEKFELMEQRQTMEKNMVSMAREVEKLRAELATVDSRPWGFGGS-YG 238

Query:   231 LLNGCPDMRYPGGAFDNG-YGGAW--GHYDKHG 260
             +     D  + G   +N  Y G+     Y  HG
Sbjct:   239 MNYNNMDGTFRGSYGENDTYLGSSERSQYYSHG 271

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089616 AT3G14750 "AT3G14750" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 90/265 (33%), Positives = 150/265 (56%)

Query:    10 HPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQR 69
             HP      R+    V  RGL P       LE+ +  Q +++  ++++N+     +  L++
Sbjct:    44 HPSMIDDSREPQFRVDARGLPPQF---SILEDRLAAQNQDVQGLLADNQRLAATHVALKQ 100

Query:    70 ELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129
             EL  ++ E+ R+   I  LRA++E   RE++D+ ++ E+ELR  + +RAE+ ++RA++++
Sbjct:   101 ELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEMELREVDAMRAEIQKIRADIKE 160

Query:   130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQ 189
               S RQELT+Q+  +T+D+ RL A+ +Q+  + A+I+  + EL  AR A ++EKK   E 
Sbjct:   161 FTSGRQELTSQVHLMTQDLARLTADLQQIPTLTAEIENTKQELQRARAAIDYEKKGYAEN 220

Query:   190 IEQKQAMENNLISMAREIEKLRAELLNTERRACGLG------GSAYGLLNGCPDMRYPGG 243
              E  + ME+ L++MARE+EKLRAE+ N+E  A   G      G AYG   G P+  YP  
Sbjct:   221 YEHGKIMEHKLVAMARELEKLRAEIANSETSAYANGPVGNPGGVAYGGGYGNPEAGYPVN 280

Query:   244 AFDNGYG------GAWGHYDK-HGP 261
              +   Y       G  G+Y   +GP
Sbjct:   281 PYQPNYTMNPAQTGVVGYYPPPYGP 305

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2033681 AT1G67170 "AT1G67170" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 77/246 (31%), Positives = 139/246 (56%)

Query:    10 HPDSARGFRDGPRPVLTRGLAP---MHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTH 66
             HP++  G      P   +G+ P   M   P  +E++   Q  E+ R+  EN+     +  
Sbjct:    27 HPETF-GNHGAIPPSAAQGVYPSFNMLPPPEVMEQKFVAQHGELQRLAIENQRLGGTHGS 85

Query:    67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE 126
             L++EL A++ EI  L   I  +++++E     L ++  K+E EL+ SE V+ E+ Q RAE
Sbjct:    86 LRQELAAAQHEIQMLHAQIGSMKSEREQRMMGLAEKVAKMETELQKSEAVKLEMQQARAE 145

Query:   127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN 186
              + L  +R+EL +++  LT+++ +  ++ +Q+ A+ ++++ +R E  + R  +++EKK  
Sbjct:   146 ARSLVVAREELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQCRATYDYEKKFY 205

Query:   187 EEQIEQKQAMENNLISMAREIEKLRAELLN---TERRACGLGGSAYGLLNGCPDMRYPGG 243
              + +E  QAME N ++MARE+EKL+A+L+N   ++RRA    G  YG  N   ++   G 
Sbjct:   206 NDHLESLQAMEKNYMTMAREVEKLQAQLMNNANSDRRA----GGPYGN-NINAEIDASGH 260

Query:   244 AFDNGY 249
                NGY
Sbjct:   261 QSGNGY 266

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060848 AT2G30120 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 66/219 (30%), Positives = 119/219 (54%)

Query:    39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
             LE+ I IQ RE+  ++++N+     +  L+ +L  +K E+ RL +   K++A+ EA  RE
Sbjct:    39 LEDRIAIQHREIQSLLNDNQRLAVAHIGLKDQLNVAKRELERLLETAVKVKAEGEAKVRE 98

Query:    99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
             ++   L++E E R  + + AE+ Q+R++VQ+L S RQEL T++     ++ + +  + + 
Sbjct:    99 VYQNALRMEAEARVIDGLGAELGQVRSDVQRLGSDRQELATELAMFDDEMAKAKPNSDRA 158

Query:   159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218
             I ++ +I+ +R E+ + R A E EKK     +  ++ ME  +  + REI KL  EL++ E
Sbjct:   159 IEVKLEIEILRGEIRKGRAALELEKKTRASNLHHERGMEKTIDHLNREIVKLEEELVDLE 218

Query:   219 RRACGLGGSAYGLLNGCPDMRYP-GGAFDNGYGGAWGHY 256
              +A     +A       P +    G   D+ YGG    Y
Sbjct:   219 TKAREANAAAEAAPTPSPGLAASYGNNTDDIYGGQGRQY 257

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2156146 AT5G61920 "AT5G61920" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 61/214 (28%), Positives = 104/214 (48%)

Query:     8 SRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHL 67
             SRH D+     D PR +    ++        LE +I +Q  E+ R+ ++NR        L
Sbjct:    27 SRHHDTISSTSD-PRHLRDHQISLSDI----LENKIAVQAAEIDRLSNDNRKLASSYVAL 81

Query:    68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEV 127
             + +LT +  E+  L   I K   D E   R   ++  K+E  ++  E +R EV     E 
Sbjct:    82 KEDLTVADREVQGLRAHIRKTETDHEIQIRSTLEKIAKMEGMVKNRENIRREVQSAHIEA 141

Query:   128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANE 187
              +L   R+EL +++K   KD+ ++  E + L A   +++ ++ E    R+ FE EK  N 
Sbjct:   142 HRLAREREELASKVKLGMKDLKKVCLEAESLEASSQELERLKEEHQRLRKEFEEEKSGNV 201

Query:   188 EQIEQKQAMENNLISMAREIEKLRAELLNTERRA 221
             E++ Q + ME  +I   + IEKLR+E+     +A
Sbjct:   202 EKLAQLKGMERKIIGAVKAIEKLRSEISTARNKA 235

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3A9A0 CHY_2490 "Conserved domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 122 (48.0 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 31/109 (28%), Positives = 64/109 (58%)

Query:   112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171
             A E +R+++ ++R E+ +L +   EL  ++ GL  + N L AE  +L   +A+++G+R+E
Sbjct:    33 AVEELRSDINEMRKEINELRAEVNELRAEVNGLKAETNELRAEMSEL---KAEVNGLRTE 89

Query:   172 LVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL-NTER 219
             + E R       + NE +  +   ME+ + +M ++I +++A L  +TE+
Sbjct:    90 MNELRT------EMNEMK-NKITTMEDKIAAMEKDIAEIKATLREHTEK 131

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_2490 CHY_2490 "conserved domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 122 (48.0 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 31/109 (28%), Positives = 64/109 (58%)

Query:   112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171
             A E +R+++ ++R E+ +L +   EL  ++ GL  + N L AE  +L   +A+++G+R+E
Sbjct:    33 AVEELRSDINEMRKEINELRAEVNELRAEVNGLKAETNELRAEMSEL---KAEVNGLRTE 89

Query:   172 LVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL-NTER 219
             + E R       + NE +  +   ME+ + +M ++I +++A L  +TE+
Sbjct:    90 MNELRT------EMNEMK-NKITTMEDKIAAMEKDIAEIKATLREHTEK 131

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6V4L1 Q6V4L1 "M protein" [Streptococcus pyogenes (taxid:1314)]

 Score = 139 (54.0 bits), Expect = 6.5e-07, P = 6.5e-07
 Identities = 50/190 (26%), Positives = 95/190 (50%)

Query:    40 EEEIEIQRREMH-RIISENRHAIDDNTH-LQRELTASKDEIHRLGQIIPKLRA--DKEAH 95
             E+E E + +E   + + E +   D +   L+R+L AS++   ++ + +  L A  DK   
Sbjct:   157 EKEAERKEKEAEQKKLKEEKQISDASRQGLRRDLDASREAKKQVEKDLANLTAELDKVKE 216

Query:    96 TRELFD---RGLK--LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150
              +++ D   +GL+  L+    A + V A++  L AE QKL   +Q      +GL++D+  
Sbjct:   217 EKQVSDASRQGLRRDLDASREAKKKVEADLAALTAEHQKLKEEKQISDASRQGLSRDLEA 276

Query:   151 LEAENKQLIAMRAD-------IDGIRSELVEARRAFEFEKKANEEQIE-QKQAMENNLIS 202
                  K++ A  A+       ++ +  EL E ++  E EK   + ++E + +A++  L  
Sbjct:   277 SREAKKKVEADLAEANSKLQALEKLNKELEEGKKLSEKEKAELQARLEAEAKALKEQLAK 336

Query:   203 MAREIEKLRA 212
              A E+ KLRA
Sbjct:   337 QAEELAKLRA 346

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6V4L4 Q6V4L4 "M protein" [Streptococcus pyogenes (taxid:1314)]

 Score = 138 (53.6 bits), Expect = 8.4e-07, P = 8.4e-07
 Identities = 49/191 (25%), Positives = 96/191 (50%)

Query:    40 EEEIEIQRREMH-RIISENRHAIDDNTH-LQRELTASKDEIHRLGQIIPKLRA--DKEAH 95
             E+E E + +E   + + E +   D +   L+R+L AS++   ++ + +  L A  DK   
Sbjct:   156 EKEAERKEKEAEQKKLKEEKQISDASRQGLRRDLDASREAKKQVEKDLANLTAELDKAKE 215

Query:    96 TRELFD---RGLK--LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150
              +++ D   +GL+  L+    A + V  ++  L AE+ K+   +Q      +GL +D++ 
Sbjct:   216 EKQISDASRQGLRRDLDASREAKKQVEKDLANLTAELDKVKEEKQISDASRQGLRRDLDA 275

Query:   151 LEAENKQLI-AMR------ADIDGIRSELVEARRAFEFEKKANEEQIE-QKQAMENNLIS 202
                  KQ+  A+       A ++ +  EL E+++  E EK   + ++E + +A++  L  
Sbjct:   276 SREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAK 335

Query:   203 MAREIEKLRAE 213
              A E+ KLRAE
Sbjct:   336 QAEELAKLRAE 346

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6V4L9 Q6V4L9 "M protein" [Streptococcus pyogenes (taxid:1314)]

 Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 49/191 (25%), Positives = 96/191 (50%)

Query:    40 EEEIEIQRREMH-RIISENRHAIDDNTH-LQRELTASKDEIHRLGQIIPKLRA--DKEAH 95
             E+E E + +E   + + E +   D +   L+R+L AS++   ++ + +  L A  DK   
Sbjct:   150 EKEAERKEKEAEQKKLKEEKQISDASRQGLRRDLDASREAKKQVEKDLANLTAELDKVKE 209

Query:    96 TRELFD---RGLK--LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150
              +++ D   +GL+  L+    A + V  ++  L AE+ K+   +Q      +GL +D++ 
Sbjct:   210 EKQISDASRQGLRRDLDASREAKKQVEKDLADLTAELDKVKEEKQISDASRQGLRRDLDA 269

Query:   151 LEAENKQLI-AMR------ADIDGIRSELVEARRAFEFEKKANEEQIE-QKQAMENNLIS 202
                  KQ+  A+       A ++ +  EL E+++  E EK   + ++E + +A++  L  
Sbjct:   270 SREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEQLAK 329

Query:   203 MAREIEKLRAE 213
              A E+ KLRAE
Sbjct:   330 QAEELAKLRAE 340

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030337001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (227 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
smart00787	312	smart00787, Spc7, Spc7 kinetochore protein	5e-04
pfam05483	787	pfam05483, SCP-1, Synaptonemal complex protein 1 (	7e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	8e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	8e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
pfam07106	169	pfam07106, TBPIP, Tat binding protein 1(TBP-1)-int	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	0.002
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.003
pfam04977	80	pfam04977, DivIC, Septum formation initiator	0.004
COG5185	622	COG5185, HEC1, Protein involved in chromosome segr	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 10/190 (5%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
           L  ++E   R++  +  E     ++   LQ  L   ++E+  L + + +L+   E    E
Sbjct: 707 LRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEE 766

Query: 99  L---FDRGLKLEVELRASEPVRAEVVQLRAEVQK----LNSSRQELTTQIKGLTKDVNRL 151
           L    +   KL+ E+   E  R  + +   E+++           L  +++ L +   RL
Sbjct: 767 LESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERL 826

Query: 152 EAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLR 211
           E E ++L     +++    EL E     E E +  +E++E+ +A +  L     E+++L 
Sbjct: 827 EQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELED---ELKELE 883

Query: 212 AELLNTERRA 221
            E    E   
Sbjct: 884 EEKEELEEEL 893

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 11/187 (5%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
           LE EI + R  +  + +E     +    L+ ++ A K+E+     ++ +L          
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEA 359

Query: 99  LFDRGLKLEVELRASEP----VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154
             +   KL   L   E     +R E+ +L AE+ ++ +  +EL  +I+ L + + RL   
Sbjct: 360 KEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSER 419

Query: 155 NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214
            + L     +++    EL       + E +   E++E+ +     L    +E+E+  AEL
Sbjct: 420 LEDLKEELKELEAELEEL-------QTELEELNEELEELEEQLEELRDRLKELERELAEL 472

Query: 215 LNTERRA 221
               +R 
Sbjct: 473 QEELQRL 479

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 16/203 (7%)

Query: 38  TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
            LE++ +I R  +  +  +          L+ +L    +E+  L + + +L+ + E+   
Sbjct: 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES-LE 357

Query: 98  ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157
              +       EL +       + +L  +++ L S   +L  QI  L  ++ RLEA  ++
Sbjct: 358 AELEELEAELEELESR------LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411

Query: 158 LIAMRADIDGIRSELV---------EARRAFEFEKKANEEQIEQKQAMENNLISMAREIE 208
           L   R  +     EL+         E +   E  ++  EE  E+ + +E  L  +  E+E
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471

Query: 209 KLRAELLNTERRACGLGGSAYGL 231
           +    L   ER    L      L
Sbjct: 472 EAEQALDAAERELAQLQARLDSL 494

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 13/186 (6%)

Query: 41  EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELF 100
           E++E +  ++   + E    +     L++E+   K E+  L   I +L  D       L 
Sbjct: 726 EQLEQEEEKLKERLEELEEDLSS---LEQEIENVKSELKELEARIEELEEDLHKLEEALN 782

Query: 101 DRGLKLEVELRAS--EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
           D    LE  L  S    ++AE+ +L  EV ++ +  +E+  ++  LT +   LE E ++L
Sbjct: 783 D----LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL 838

Query: 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS----MAREIEKLRAEL 214
              R D+      + +       +K+  EE++E+ +A   +L S    + +E ++L A+L
Sbjct: 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898

Query: 215 LNTERR 220
              ER+
Sbjct: 899 RELERK 904

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 21/183 (11%)

Query: 38  TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
            LE +IE  + E+       R A+D+   L+ ELT   +E   L + +  L     A  R
Sbjct: 786 ELEAQIEQLKEEL----KALREALDE---LRAELTLLNEEAANLRERLESLERRIAATER 838

Query: 98  ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE--- 154
            L       E      E +  ++  L AE+++L    +EL ++++ L  +   LE     
Sbjct: 839 RL-------EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891

Query: 155 -NKQLIAMRADIDGIRSELVEARRAFEFEKKANEE---QIEQKQAMENNLISMAREIEKL 210
              +L  +  ++  + S+  E RR  E  ++   +   ++E  +   +NL     E   L
Sbjct: 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL 951

Query: 211 RAE 213
             E
Sbjct: 952 TLE 954

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 39/187 (20%), Positives = 83/187 (44%), Gaps = 4/187 (2%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
           L  +I   R+++ R+ +E     +    L +ELT  + EI  L + + +   +      E
Sbjct: 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783

Query: 99  LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN--- 155
           + +   ++E      + +R  + +LRAE+  LN     L  +++ L + +   E      
Sbjct: 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843

Query: 156 -KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214
            +Q+  +  DI+ + +E+ E     E  +   E  + ++ ++E  L  +  E+E+L  EL
Sbjct: 844 EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903

Query: 215 LNTERRA 221
              E + 
Sbjct: 904 RELESKR 910

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 38/188 (20%), Positives = 81/188 (43%), Gaps = 4/188 (2%)

Query: 38  TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
            LEEE+E     + ++  E     +    LQ EL   ++E+    + +  L  + E+  +
Sbjct: 762 ELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQ 821

Query: 98  ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE--- 154
                  ++E      E +  ++ +L  E+++L    +EL  +++ L  +   LE E   
Sbjct: 822 RRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE 881

Query: 155 -NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAE 213
             ++   +  ++  + SEL E +   E  ++  EE   + + +E  L  +  E+E+   +
Sbjct: 882 LEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYED 941

Query: 214 LLNTERRA 221
            L TE   
Sbjct: 942 TLETELER 949

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 36/187 (19%), Positives = 81/187 (43%), Gaps = 18/187 (9%)

Query: 38  TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
            LEEE+     +    + +    +     L+ EL + +D +  L + + +L        R
Sbjct: 671 ELEEELAELEAQ----LEKLEEELKS---LKNELRSLEDLLEELRRQLEELE-------R 716

Query: 98  ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157
           +L +   +L       E +++ + +L  E+++L    +EL  +++ L +++  LE    +
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776

Query: 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL----ISMAREIEKLRAE 213
           L     +++  R  L E     E E +  E +++  +    +L      + +EIE+L  E
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE 836

Query: 214 LLNTERR 220
           +   E +
Sbjct: 837 IEELEEK 843

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 40/193 (20%), Positives = 80/193 (41%), Gaps = 24/193 (12%)

Query: 37  MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHT 96
              E+EIE  + E+                L+ EL   ++E+  L + I +L  +     
Sbjct: 263 EEAEKEIEELKSELEE--------------LREELEELQEELLELKEEIEELEGEISLLR 308

Query: 97  RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK 156
             L +   +LE      E ++ ++  L+ E+++  +  +EL   +  L +    LE +  
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368

Query: 157 QLI--------AMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMA-REI 207
            L+        A+R ++  + +EL E R   E E K   E +E++    +  +     E+
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELE-ELKREIESLEERLERLSERLEDLKEEL 427

Query: 208 EKLRAELLNTERR 220
           ++L AEL   +  
Sbjct: 428 KELEAELEELQTE 440

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 33/142 (23%), Positives = 68/142 (47%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
           LEE  E  R E+  + +E     ++   L+RE+ + ++ + RL + +  L+ + +    E
Sbjct: 374 LEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAE 433

Query: 99  LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
           L +   +LE      E +  ++ +LR  +++L     EL  +++ L K+++ LEA   +L
Sbjct: 434 LEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRL 493

Query: 159 IAMRADIDGIRSELVEARRAFE 180
            A +    G+R+ L        
Sbjct: 494 EAEQRASQGVRAVLEALESGLP 515

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 3/185 (1%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
           LE EI+    E+  +  E          L  E    K+E+  L   + ++  +      E
Sbjct: 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386

Query: 99  LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
           L D   KLE   R    ++ E+ +L+ E+Q+L+    +L   I G+   +N LE E +  
Sbjct: 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446

Query: 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218
                  +    +L      +E E    +E+ ++   +E  L  + RE+ +  A+   +E
Sbjct: 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR---VEKELSKLQRELAEAEAQARASE 503

Query: 219 RRACG 223
            R  G
Sbjct: 504 ERVRG 508

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 37/182 (20%), Positives = 86/182 (47%), Gaps = 9/182 (4%)

Query: 42  EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFD 101
            +E  R E+  +  E + A ++   L  EL   ++++  L   + +L  + E   +EL+ 
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292

Query: 102 RGLK---LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
              +   LE + +    +R  +  L  ++++L +  +EL +++  L +++  LE + ++L
Sbjct: 293 LANEISRLEQQKQI---LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349

Query: 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218
              + +++ + +EL E     E  +   EE  EQ + + + +  +  +I  L  E+   E
Sbjct: 350 ---KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406

Query: 219 RR 220
            R
Sbjct: 407 AR 408

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 52  RIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR 111
           R +S+   A +    LQ+EL   ++E+  L + + +L+ +     +EL      LE EL 
Sbjct: 56  RYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQEN----QELKQELSTLEAELE 111

Query: 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
             +   A + QL A   +L+   +EL  ++  L ++   LEAEN++L
Sbjct: 112 RLQKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERL 158

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 10/152 (6%)

Query: 70  ELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129
            L   ++E+  L + + +   + E  T EL +   KLE        +R EV +L  E+++
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEE-------LRLEVSELEEEIEE 285

Query: 130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQ 189
           L      L  +I  L +    L      L     +++    EL         E    EE+
Sbjct: 286 LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345

Query: 190 IEQKQAMENNLISMAREIEKLRAELLNTERRA 221
           +E+ +     L S+  E+E+L AEL   E R 
Sbjct: 346 LEELK---EELESLEAELEELEAELEELESRL 374

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 36/176 (20%), Positives = 72/176 (40%), Gaps = 3/176 (1%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
           LE EIE     +     E   A  +   L+ ++   K+E+  L + + +LRA+      E
Sbjct: 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818

Query: 99  LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
             +   +LE   R        +  L  ++++L+   + L  +I+ L + +  LE+E + L
Sbjct: 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878

Query: 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214
           +  RA    +   L   R   E   +   E   ++  +   L  +  ++ +L   L
Sbjct: 879 LNERA---SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 4/141 (2%)

Query: 85  IPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144
           I +L    E    ++ +    L    +  E +  E+ QLR E+++L+     L   +  L
Sbjct: 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738

Query: 145 TKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA----MENNL 200
             +V +LE    QL     +++    EL E     E E    E +IE+ +A    ++  L
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 201 ISMAREIEKLRAELLNTERRA 221
            ++   +++LRAEL      A
Sbjct: 799 KALREALDELRAELTLLNEEA 819

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 33/157 (21%)

Query: 67  LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEP-----VRAEVV 121
           L+ +      E+  L  I PKLR  K+A   EL  +  +LE EL   +P      + ++ 
Sbjct: 156 LKEDYKLLMKELELLNSIKPKLRDRKDALEEEL-RQLKQLEDELEDCDPTELDRAKEKLK 214

Query: 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181
           +L  E+       +EL  +++ L   +  L                + +E+ EA +  E 
Sbjct: 215 KLLQEIMIKVKKLEELEEELQELESKIEDL----------TNKKSELNTEIAEAEKKLE- 263

Query: 182 EKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218
                          +    +  +EIEKL+ +L   +
Sbjct: 264 ---------------QCRGFT-FKEIEKLKEQLKLLQ 284

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 312

>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1)

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 48/189 (25%), Positives = 94/189 (49%), Gaps = 11/189 (5%)

Query: 25  LTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI 84
           LT+  + M       +E+I   +++  R++ +  +  +   +L+ EL + ++E  + G  
Sbjct: 504 LTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDE 563

Query: 85  IPKLRADK-EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143
           + K + DK E + R +    LK E +++  E    +   L+ +++  N + +EL  + K 
Sbjct: 564 V-KCKLDKSEENARSIEYEVLKKEKQMKILEN---KCNNLKKQIENKNKNIEELHQENKA 619

Query: 144 LTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISM 203
           L K   +  AENKQL A    ++ +  EL  A++ FE      +++IE K+  E  L+  
Sbjct: 620 LKK---KGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLE- 675

Query: 204 AREIEKLRA 212
             E+EK +A
Sbjct: 676 --EVEKAKA 682

Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase. Length = 787

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 35/195 (17%), Positives = 66/195 (33%), Gaps = 21/195 (10%)

Query: 38  TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
            LE++++    E+  +       +        +L   + +I  L   +  L   +    R
Sbjct: 63  KLEKQLKSLETEIASL----EAQL---IETADDLKKLRKQIADLNARLNALEVQEREQRR 115

Query: 98  EL-------FDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150
            L          G      L  S       V+L      LN +R E    +K   K +  
Sbjct: 116 RLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAA 175

Query: 151 LEAENKQLIAMRADIDGIRSELVEARRAFEF---EKKANEEQIEQ-KQAMENNLISMARE 206
           + AE   + A +A++  + SE    +        E+K    Q+     A +  L  +   
Sbjct: 176 VRAE---IAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRAN 232

Query: 207 IEKLRAELLNTERRA 221
             +L+ E+ + E  A
Sbjct: 233 ESRLKNEIASAEAAA 247

Length = 420

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 39/180 (21%), Positives = 83/180 (46%), Gaps = 12/180 (6%)

Query: 42  EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFD 101
           EI+ +   + + I    +  +     ++EL     EI+ +   +P+LR + E        
Sbjct: 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELE-------- 224

Query: 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAM 161
              KLE E++  E ++ E+ +L  E++ L  S+++L  +I+ L + +  L+ E ++L   
Sbjct: 225 ---KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK 281

Query: 162 RADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRA 221
             ++  ++ +  E  +  EF ++  +E  E ++ +   L      IE+   EL   E R 
Sbjct: 282 VKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLS-RLEEEINGIEERIKELEEKEERL 340

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 39/174 (22%), Positives = 82/174 (47%), Gaps = 6/174 (3%)

Query: 41  EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELF 100
            E+  +  E+   + + R  +++   L R+++A + ++ RL   + +L       ++EL 
Sbjct: 701 AELRKELEELEEELEQLRKELEE---LSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757

Query: 101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA 160
           +   ++E      E    E+ +  AE+++L +  ++L  ++K L + ++ L AE   L  
Sbjct: 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817

Query: 161 MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214
             A++      L     A E   +  EEQIE+      ++ S+A EIE+L   +
Sbjct: 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSE---DIESLAAEIEELEELI 868

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 36/180 (20%), Positives = 79/180 (43%), Gaps = 10/180 (5%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
           LE + E   R  ++ +      ++    L  +L   + E+  L + + +L  + E    E
Sbjct: 205 LERQAEKAER--YQELKAELRELELAL-LLAKLKELRKELEELEEELSRLEEELEELQEE 261

Query: 99  LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
           L +   ++E        +++E+ +LR E+++L     EL  +I+ L  +++ L    ++L
Sbjct: 262 LEEAEKEIEE-------LKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEEL 314

Query: 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218
                +++    EL E   A + E +  E  +E+ + +   L     E+E+  + LL   
Sbjct: 315 ENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL 374

Length = 1163

>gnl|CDD|148614 pfam07106, TBPIP, Tat binding protein 1(TBP-1)-interacting protein (TBPIP)

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN--KQLIAMRADIDGIRSELVEA 175
            E+ +LR EVQ L      L  ++K LT D   L  E   +++  ++ ++  I  +L   
Sbjct: 79  MEIEELREEVQLLKQDCSTLEIELKSLTSD---LTTEELQEEIQELKKEVREIEEKLESL 135

Query: 176 RRAFEFEKKANEEQIEQKQAMENNLISMAREIEKL 210
              +   K    E++E+ +    +L    ++ +KL
Sbjct: 136 EEGW---KPVTPEEMEKVKKEYKDLHKEWKKRKKL 167

This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation. Length = 169

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 1/112 (0%)

Query: 106 LEVELRASEPVRAEVVQLRAEV-QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD 164
           LE      E +  E+ +L+     +     +EL  +I+ L + +  LE E ++L  ++A 
Sbjct: 198 LEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKAR 257

Query: 165 IDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN 216
           +  I S  +EA +  E E +  E  +E+ +     L  + REIE+L  EL  
Sbjct: 258 LLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEG 309

Length = 908

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 20/183 (10%)

Query: 40   EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTREL 99
              ++     ++     E    +  +T L RE   +  E+    + + +L     A     
Sbjct: 956  LNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGA----- 1010

Query: 100  FDRGLKLEVELRASEPVRAEVVQLRAEVQKLNS------SRQELTTQIKGLTKDVNRLEA 153
                  L+   +  + +  EV +L++  + ++S        + L      L  + N+L+A
Sbjct: 1011 ------LQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQA 1064

Query: 154  ENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAE 213
              K L   R +      +L +        K  N + +   +    NL+  A  ++ + A+
Sbjct: 1065 RYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDL---EVTNRNLVKPANVLQFIVAQ 1121

Query: 214  LLN 216
            ++ 
Sbjct: 1122 MIK 1124

Length = 1463

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 14/105 (13%)

Query: 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175
           ++ E+ +L+ E+ +L     EL  + + L ++++ LEAE ++L    A I  + +  +E 
Sbjct: 71  LQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIEL 130

Query: 176 RRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERR 220
                          E+ + +   L  + +E E L AE    +  
Sbjct: 131 D--------------EENRELREELAELKQENEALEAENERLQEN 161

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|203138 pfam04977, DivIC, Septum formation initiator

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA 153
           +  E+  L+AE+ KL +  +EL  ++K L  D + +E 
Sbjct: 22  LNQEIAALQAELAKLKAENEELEAEVKDLKSDPDYIEE 59

DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil. Length = 80

>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 26/167 (15%), Positives = 68/167 (40%), Gaps = 17/167 (10%)

Query: 62  DDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDR-------GLKLEVELRASE 114
           D+    ++EL    ++      II    A+ +     L+++         K++       
Sbjct: 249 DNYEPSEQELKLGFEKFV---HIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWR 305

Query: 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174
            ++++  +    V  +    QE   +++ L  ++   E E K   A++++ID +  +L +
Sbjct: 306 ALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIK---ALQSNIDELHKQLRK 362

Query: 175 ARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRA 221
              + E  +  N+E+ +    +   L  +  + +KL   + + +  A
Sbjct: 363 QGISTEQFELMNQEREK----LTRELDKINIQSDKLTKSVKSRKLEA 405

Length = 622

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.68
PRK11637	428	AmiB activator; Provisional	97.66
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.57
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.57
PRK09039	343	hypothetical protein; Validated	97.55
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.11
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.08
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.04
PRK02224	880	chromosome segregation protein; Provisional	97.01
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.99
PRK11637	428	AmiB activator; Provisional	96.94
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.87
PRK03918	880	chromosome segregation protein; Provisional	96.76
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	96.75
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.75
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.73
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.67
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.66
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	96.53
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.52
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.5
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.47
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.47
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	96.42
PRK04863	1486	mukB cell division protein MukB; Provisional	96.37
COG4372	499	Uncharacterized protein conserved in bacteria with	96.34
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.32
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.31
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.26
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.25
PRK02224	880	chromosome segregation protein; Provisional	96.22
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.19
PRK03918	880	chromosome segregation protein; Provisional	96.18
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.16
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.07
PHA02562	562	46 endonuclease subunit; Provisional	95.72
PF13514	1111	AAA_27: AAA domain	95.71
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	95.65
PRK04778	569	septation ring formation regulator EzrA; Provision	95.53
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.52
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	95.47
PHA02562	562	46 endonuclease subunit; Provisional	95.39
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	95.38
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.34
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.31
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.29
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.28
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	95.16
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.06
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	95.05
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	94.88
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	94.86
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.84
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.83
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.7
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.67
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	94.61
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.59
KOG0933	1174	consensus Structural maintenance of chromosome pro	94.53
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	94.53
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.25
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	94.25
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	94.1
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	94.08
KOG0933	1174	consensus Structural maintenance of chromosome pro	94.0
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	93.95
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	93.94
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	93.8
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.78
KOG0996	1293	consensus Structural maintenance of chromosome pro	93.78
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	93.77
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	93.65
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.61
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	93.6
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.58
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	93.58
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	93.49
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	93.36
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	93.32
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	93.31
PRK09039	343	hypothetical protein; Validated	93.3
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	93.28
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.22
KOG0996	1293	consensus Structural maintenance of chromosome pro	93.17
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	93.15
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	93.06
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	93.04
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.95
PRK04863	1486	mukB cell division protein MukB; Provisional	92.92
KOG4673	961	consensus Transcription factor TMF, TATA element m	92.76
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	92.76
PF14662	193	CCDC155: Coiled-coil region of CCDC155	92.69
COG4372	499	Uncharacterized protein conserved in bacteria with	92.62
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	92.61
PRK10884	206	SH3 domain-containing protein; Provisional	92.56
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	92.56
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	92.5
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	92.32
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	92.25
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	91.97
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	91.93
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	91.9
PF13514	1111	AAA_27: AAA domain	91.82
COG2433	652	Uncharacterized conserved protein [Function unknow	91.78
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	91.68
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	91.64
COG5185	622	HEC1 Protein involved in chromosome segregation, i	91.6
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	91.58
KOG0964	1200	consensus Structural maintenance of chromosome pro	91.56
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	91.55
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	91.51
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	91.46
KOG4807	593	consensus F-actin binding protein, regulates actin	91.34
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	91.14
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.06
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	90.95
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	90.9
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	90.89
PRK11519	719	tyrosine kinase; Provisional	90.74
PRK04778	569	septation ring formation regulator EzrA; Provision	90.72
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	90.7
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	90.57
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	90.54
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	90.49
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	90.48
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.45
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	90.4
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	90.35
PF13805	271	Pil1: Eisosome component PIL1; PDB: 3PLT_B.	90.27
PRK11546	143	zraP zinc resistance protein; Provisional	90.03
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	89.98
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	89.91
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	89.85
KOG0971	1243	consensus Microtubule-associated protein dynactin	89.71
PRK03947	140	prefoldin subunit alpha; Reviewed	89.64
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	89.63
PRK01156	895	chromosome segregation protein; Provisional	89.58
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	89.48
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	89.41
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.24
PRK01156	895	chromosome segregation protein; Provisional	89.17
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	89.03
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	88.75
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	88.69
KOG1962	216	consensus B-cell receptor-associated protein and r	88.43
PRK12704	520	phosphodiesterase; Provisional	88.42
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	88.29
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.17
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	88.16
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	88.1
COG3206	458	GumC Uncharacterized protein involved in exopolysa	87.83
KOG0993	542	consensus Rab5 GTPase effector Rabaptin-5 [Intrace	87.74
PRK10246	1047	exonuclease subunit SbcC; Provisional	87.56
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	87.48
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	87.44
PRK10361	475	DNA recombination protein RmuC; Provisional	87.35
KOG0288	459	consensus WD40 repeat protein TipD [General functi	87.21
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	87.2
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	87.19
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	87.17
PRK10884	206	SH3 domain-containing protein; Provisional	87.14
PF08776	40	VASP_tetra: VASP tetramerisation domain; InterPro:	86.89
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	86.8
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	86.76
KOG1937	521	consensus Uncharacterized conserved protein [Funct	86.55
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	86.52
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	86.46
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	86.41
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	86.12
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	85.85
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	85.82
KOG0249	916	consensus LAR-interacting protein and related prot	85.62
KOG3433	203	consensus Protein involved in meiotic recombinatio	85.55
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	85.54
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	85.48
COG4942	420	Membrane-bound metallopeptidase [Cell division and	85.21
PF14362	301	DUF4407: Domain of unknown function (DUF4407)	85.16
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	85.12
PF05837	106	CENP-H: Centromere protein H (CENP-H); InterPro: I	85.05
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	84.97
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	84.77
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	84.65
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	84.65
KOG4807	593	consensus F-actin binding protein, regulates actin	84.57
KOG4673	961	consensus Transcription factor TMF, TATA element m	84.56
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	84.5
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	84.39
PF12592	57	DUF3763: Protein of unknown function (DUF3763); In	84.37
PF10186	302	Atg14: UV radiation resistance protein and autopha	84.36
TIGR02231	525	conserved hypothetical protein. This family consis	84.23
KOG0979	1072	consensus Structural maintenance of chromosome pro	84.15
PF06120	301	Phage_HK97_TLTM: Tail length tape measure protein;	83.91
PF07794	790	DUF1633: Protein of unknown function (DUF1633); In	83.83
PF07139	302	DUF1387: Protein of unknown function (DUF1387); In	83.67
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	83.41
COG2433	652	Uncharacterized conserved protein [Function unknow	83.08
PF04626	132	DEC-1_C: Dec-1 protein, C terminal region; InterPr	82.87
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	82.52
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	82.46
PRK10361	475	DNA recombination protein RmuC; Provisional	81.97
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	81.94
PRK00106	535	hypothetical protein; Provisional	81.82
PF08912	69	Rho_Binding: Rho Binding; InterPro: IPR015008 Rho	81.8
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	81.68
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	81.62
KOG0018	1141	consensus Structural maintenance of chromosome pro	81.54
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	81.39
TIGR02231	525	conserved hypothetical protein. This family consis	81.33
TIGR02473	141	flagell_FliJ flagellar export protein FliJ. Member	81.29
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	81.27
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	81.2
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	81.19
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	81.02
PRK11578	370	macrolide transporter subunit MacA; Provisional	80.99
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	80.93
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	80.87
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	80.81
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	80.79
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	80.77
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	80.41
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	80.02
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	80.02

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.68  E-value=0.0092  Score=62.51  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 024699          193 KQAMENNLISMAREIEKLRAELLN  216 (264)
Q Consensus       193 ~qaMEknlismarEvEKLRaElan  216 (264)
                      ...+.+++-.+..++.+++.++..
T Consensus       471 l~~~~~~l~~l~~~l~~l~~~~~~  494 (1164)
T TIGR02169       471 LYDLKEEYDRVEKELSKLQRELAE  494 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK11637 AmiB activator; Provisional

Probab=97.66  E-value=0.042  Score=53.26  Aligned_cols=80  Identities=18%  Similarity=0.224  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024699          127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE  206 (264)
Q Consensus       127 ~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarE  206 (264)
                      ++.+...+++|..+.+.+..++..+....+.+-.-+++|+..+.|-+...+.++-+++.....+.+++.-++.|-..-.+
T Consensus       172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~  251 (428)
T PRK11637        172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR  251 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555666666666666666666666666666666666666666666655555444333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.57  E-value=0.014  Score=61.08  Aligned_cols=51  Identities=18%  Similarity=0.173  Sum_probs=23.5

Q ss_pred             hHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhh
Q 024699           39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLR   89 (264)
Q Consensus        39 LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~   89 (264)
                      ++..+.....++..+-.....+-.....|++++...+.++..+...+..+.
T Consensus       292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~  342 (1164)
T TIGR02169       292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE  342 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444455554444444444444444444444444444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.57  E-value=0.023  Score=52.16  Aligned_cols=94  Identities=22%  Similarity=0.306  Sum_probs=84.3

Q ss_pred             cchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           62 DDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI  141 (264)
Q Consensus        62 athvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qv  141 (264)
                      .....+..+|..+.+.|..+..-.+.+..+.+.-..++-+=-.|+|.+......+..|+..++.++......|-+|-.++
T Consensus        47 ~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i  126 (312)
T PF00038_consen   47 RIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQI  126 (312)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHH
Confidence            35666888899999999999998999999999888888888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 024699          142 KGLTKDVNRLEAEN  155 (264)
Q Consensus       142 q~l~qeL~r~~ad~  155 (264)
                      +.|..||.-+...-
T Consensus       127 ~~L~eEl~fl~~~h  140 (312)
T PF00038_consen  127 QSLKEELEFLKQNH  140 (312)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999998776543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK09039 hypothetical protein; Validated

Probab=97.55  E-value=0.012  Score=56.39  Aligned_cols=147  Identities=20%  Similarity=0.286  Sum_probs=101.5

Q ss_pred             HHHHHHHHhhHHHHHHHhhhhhHhhhhhH---HHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           65 THLQRELTASKDEIHRLGQIIPKLRADKE---AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI  141 (264)
Q Consensus        65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~e---~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qv  141 (264)
                      .-|.++|...++||..|...|..+-.--.   ...-.+=+++..+.+++.+.+..|++|.....   .+.....++.+++
T Consensus        42 ~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~---~~~~~~~~~~~~~  118 (343)
T PRK09039         42 FFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA---ELAGAGAAAEGRA  118 (343)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhcchHHHHH
Confidence            46788888888888888888777552222   22234445555666666666666555554333   1222223445555


Q ss_pred             HHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 024699          142 KGLTKDVNRLE----AENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISM----AREIEKLRAE  213 (264)
Q Consensus       142 q~l~qeL~r~~----ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlism----arEvEKLRaE  213 (264)
                      ..+..+|...+    ....+|-.|+++|++||..|..+-++++.-+....+.-.+...+++.|-..    +.|++++|.+
T Consensus       119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~  198 (343)
T PRK09039        119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSE  198 (343)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            55555554444    355678899999999999999999999999999999999999999988766    4577888888


Q ss_pred             H
Q 024699          214 L  214 (264)
Q Consensus       214 l  214 (264)
                      +
T Consensus       199 ~  199 (343)
T PRK09039        199 F  199 (343)
T ss_pred             H
Confidence            7

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.11  E-value=0.098  Score=49.39  Aligned_cols=154  Identities=16%  Similarity=0.302  Sum_probs=118.9

Q ss_pred             HHHHHHhhHHHHH-HHhhhhhHhhhhhHHHHHH-HHHhhhhhHHhhhh-----chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           67 LQRELTASKDEIH-RLGQIIPKLRADKEAHTRE-LFDRGLKLEVELRA-----SEPVRAEVVQLRAEVQKLNSSRQELTT  139 (264)
Q Consensus        67 LrqeLaaaq~Elq-rl~~~~~~l~ae~e~q~R~-l~ek~~KmEAelra-----~e~lk~El~q~raE~q~L~~~RQeL~~  139 (264)
                      |=+|-..+-.|++ -|......+++=.-++.+. -|+-..++.-.|+.     .+.|+.|...+...++.|......|..
T Consensus       105 Lf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~  184 (325)
T PF08317_consen  105 LFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRE  184 (325)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444443 3446666666555555443 35555666555544     378888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699          140 QIKGLTKDVNRLEAENKQLIA-MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE  218 (264)
Q Consensus       140 qvq~l~qeL~r~~ad~qqipa-l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae  218 (264)
                      ..+.|..++..+++-...+.. =+.+|..+++||......|+.-|+.-.++-.+++..+..+-.+..+..+|.++|++++
T Consensus       185 ~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  185 RKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988887665542 3578899999999999999999999999999999999999999999999999999987


Q ss_pred             hc
Q 024699          219 RR  220 (264)
Q Consensus       219 ~r  220 (264)
                      +.
T Consensus       265 ~~  266 (325)
T PF08317_consen  265 KI  266 (325)
T ss_pred             HH
Confidence            44

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.08  E-value=0.079  Score=45.43  Aligned_cols=111  Identities=23%  Similarity=0.263  Sum_probs=81.7

Q ss_pred             HHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 024699           99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA  178 (264)
Q Consensus        99 l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa  178 (264)
                      |-+++..||+||..++   .+...+-.|+..--+.-..|.+++..||+++.++..|+   ..++.|-+.|-++++.-..-
T Consensus        22 le~~v~~LEreLe~~q---~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL---~~l~sEk~~L~k~lq~~q~k   95 (140)
T PF10473_consen   22 LEDHVESLERELEMSQ---ENKECLILDAENSKAEIETLEEELEELTSELNQLELEL---DTLRSEKENLDKELQKKQEK   95 (140)
T ss_pred             HHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            3478888888776654   33444444555555555667788888888888888876   56678888888999988888


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHh
Q 024699          179 FEFEKKANEEQIEQKQAMENNLISMARE----IEKLRAELL  215 (264)
Q Consensus       179 ~EyEKk~~~e~~Eq~qaMEknlismarE----vEKLRaEla  215 (264)
                      |..-...+.+....++..|.-.+-|-.+    |+.|.+++.
T Consensus        96 v~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~  136 (140)
T PF10473_consen   96 VSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLK  136 (140)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888888888888887776655    777777653

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.04  E-value=0.14  Score=51.52  Aligned_cols=68  Identities=19%  Similarity=0.343  Sum_probs=48.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHHHHhhhhh
Q 024699          113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ-----------LIAMRADIDGIRSELVEARRAFE  180 (264)
Q Consensus       113 ~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qq-----------ipal~aEie~lrqElqr~Raa~E  180 (264)
                      ...++.||.++..++++....--.|...|..|..||.+.+.++..           |..|..||+.++.||.-+++...
T Consensus       283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~  361 (522)
T PF05701_consen  283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE  361 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            567788888888888888888888888888888888887777654           45566666666666655555443

Several sequences in this family are described as being myosin heavy chain-like.

>PRK02224 chromosome segregation protein; Provisional

Probab=97.01  E-value=0.15  Score=53.20  Aligned_cols=38  Identities=24%  Similarity=0.355  Sum_probs=14.7

Q ss_pred             hhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI  141 (264)
Q Consensus       104 ~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qv  141 (264)
                      ..++..+...+.+..++..+...++++.....++..++
T Consensus       244 ~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i  281 (880)
T PRK02224        244 EEHEERREELETLEAEIEDLRETIAETEREREELAEEV  281 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444333333333333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.99  E-value=0.15  Score=52.09  Aligned_cols=32  Identities=34%  Similarity=0.388  Sum_probs=26.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699          186 NEEQIEQKQAMENNLISMAREIEKLRAELLNT  217 (264)
Q Consensus       186 ~~e~~Eq~qaMEknlismarEvEKLRaElana  217 (264)
                      +..+.+|++.++.-+-+--++++.|+.||..+
T Consensus       285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~  316 (546)
T PF07888_consen  285 NEALKEQLRSAQEQLQASQQEAELLRKELSDA  316 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888888888888899999998765

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK11637 AmiB activator; Provisional

Probab=96.94  E-value=0.36  Score=46.87  Aligned_cols=61  Identities=16%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 024699          128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIE  191 (264)
Q Consensus       128 q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~E  191 (264)
                      ..|+..++++..++....++|.   ...+.+-.-+++++.+..++..-++.++-+++.....+.
T Consensus       162 ~~i~~~d~~~l~~l~~~~~~L~---~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~  222 (428)
T PRK11637        162 GYLNQARQETIAELKQTREELA---AQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLT  222 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555544444444   333334455556666666666666666666655333333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.87  E-value=0.066  Score=49.14  Aligned_cols=99  Identities=23%  Similarity=0.363  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK  193 (264)
Q Consensus       114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~  193 (264)
                      ..+..|+.++|..|..++..+..|..++..+..++..++.....   ..+....|..|+..+|..++-+...+.++-.+.
T Consensus        50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~---e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i  126 (312)
T PF00038_consen   50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEE---ELAERKDLEEELESLRKDLDEETLARVDLENQI  126 (312)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHH
Confidence            34667777788888887777777777777777777766654433   356667777888888888888888888888888


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHh
Q 024699          194 QAMENNLISMAR----EIEKLRAELL  215 (264)
Q Consensus       194 qaMEknlismar----EvEKLRaEla  215 (264)
                      ++++..|-.+..    ||.-|++.+.
T Consensus       127 ~~L~eEl~fl~~~heeEi~~L~~~~~  152 (312)
T PF00038_consen  127 QSLKEELEFLKQNHEEEIEELREQIQ  152 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTT--
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            888887766654    4555655553

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK03918 chromosome segregation protein; Provisional

Probab=96.76  E-value=0.22  Score=51.66  Aligned_cols=73  Identities=22%  Similarity=0.388  Sum_probs=37.6

Q ss_pred             HhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 024699          101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV  173 (264)
Q Consensus       101 ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElq  173 (264)
                      +...+++.++...+..+.++..+..+++.|...-+.|..++..+.+++..+...+.++..+..+++.+...+.
T Consensus       221 ~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~~  293 (880)
T PRK03918        221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAE  293 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444445555555555555555555555555555555555555555555555555554444444333

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=96.75  E-value=0.25  Score=44.90  Aligned_cols=147  Identities=23%  Similarity=0.357  Sum_probs=82.5

Q ss_pred             hHHHHHHHHhhHHHHHHHhhhhhHhhhh----------hHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 024699           64 NTHLQRELTASKDEIHRLGQIIPKLRAD----------KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSS  133 (264)
Q Consensus        64 hvaLrqeLaaaq~Elqrl~~~~~~l~ae----------~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~  133 (264)
                      ..-|||.|-.+|-||-.=.+.|.++++-          +|.++.++-+....-..   ..+....||.+...|+.-|--.
T Consensus        12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~---ELE~ce~ELqr~~~Ea~lLrek   88 (202)
T PF06818_consen   12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQL---ELEVCENELQRKKNEAELLREK   88 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH---hHHHhHHHHHHHhCHHHHhhhh
Confidence            3457777777777776555555555541          22333333332222222   1223445555555555554444


Q ss_pred             HHHHHHHHHHHHHHHHHH------------------HH--hhhhhHHHHHHHHHHHHHHHHHh-------hhhhhhhhhh
Q 024699          134 RQELTTQIKGLTKDVNRL------------------EA--ENKQLIAMRADIDGIRSELVEAR-------RAFEFEKKAN  186 (264)
Q Consensus       134 RQeL~~qvq~l~qeL~r~------------------~a--d~qqipal~aEie~lrqElqr~R-------aa~EyEKk~~  186 (264)
                      -..|..++..|...+..+                  +.  .-.-+..|+.++|.|+.||...|       ..|+.|+..-
T Consensus        89 l~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W  168 (202)
T PF06818_consen   89 LGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTW  168 (202)
T ss_pred             hhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            444555555555555553                  11  12236678888888888888654       5888888875


Q ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 024699          187 EEQIEQK----QAMENNLISMAREIEKLRAE  213 (264)
Q Consensus       187 ~e~~Eq~----qaMEknlismarEvEKLRaE  213 (264)
                      .+--|.+    +-+-.|+|-|-+=-..|-.+
T Consensus       169 ~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~  199 (202)
T PF06818_consen  169 QEEKEKVIRYQKQLQQNYVQMYQRNQALERE  199 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5443332    45667899887654444433

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.75  E-value=0.7  Score=48.56  Aligned_cols=178  Identities=19%  Similarity=0.288  Sum_probs=107.1

Q ss_pred             cccchHHHHHHHHhhHHHHHHHhhhhhHhhhh--hHHHHHHHHHhhhhh--------HHhhhh-----------------
Q 024699           60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRAD--KEAHTRELFDRGLKL--------EVELRA-----------------  112 (264)
Q Consensus        60 LaathvaLrqeLaaaq~Elqrl~~~~~~l~ae--~e~q~R~l~ek~~Km--------EAelra-----------------  112 (264)
                      |-...-.||.||...++|...|..-+..|..-  +|.+-...+||-++.        |+.|.+                 
T Consensus       451 l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~  530 (697)
T PF09726_consen  451 LTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALA  530 (697)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccc
Confidence            44445678888888888888877665555433  233334444444333        333321                 


Q ss_pred             ---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-hhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699          113 ---------SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE---AE-NKQLIAMRADIDGIRSELVEARRAF  179 (264)
Q Consensus       113 ---------~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~---ad-~qqipal~aEie~lrqElqr~Raa~  179 (264)
                               .|.+|.-..++..|+++|-..-+....++..|.+|++.++   .| .+-+.+|...|-.|+..-+|+=...
T Consensus       531 ~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL  610 (697)
T PF09726_consen  531 QAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL  610 (697)
T ss_pred             cchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence                     1235555555555555555555555555555555554222   22 3346777777778888888888888


Q ss_pred             hhhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC-CCCCCCCCCCCCCCCC
Q 024699          180 EFEKKANEEQIE-------QKQAMENNLISMAREIEKLRAELLNTERRACGLG-GSAYGLLNGCPDMRYP  241 (264)
Q Consensus       180 EyEKk~~~e~~E-------q~qaMEknlismarEvEKLRaElanae~ra~~~~-g~~Yg~~yg~p~~~~~  241 (264)
                      -.|.+.+.|+..       |+..-+.-+..=-+||.-|++.|+..-.    +. +..|+++.+.+.-.|.
T Consensus       611 saEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a----v~p~~~~~~~~~~~~~~~~  676 (697)
T PF09726_consen  611 SAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA----VMPSDSYCSAITPPTPHYS  676 (697)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCccccccCCCCCCccch
Confidence            888888877753       6666677777777889999998876642    22 2355544443333443

; GO: 0016021 integral to membrane

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.73  E-value=0.15  Score=51.35  Aligned_cols=96  Identities=18%  Similarity=0.304  Sum_probs=51.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------HHH--------------HHHHHH
Q 024699          113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL-----------IAM--------------RADIDG  167 (264)
Q Consensus       113 ~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi-----------pal--------------~aEie~  167 (264)
                      ++.|+.||..+..++..|..--...+..|+.|..+|.+.++++.-+           ..|              +.+.+.
T Consensus       311 vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~  390 (522)
T PF05701_consen  311 VESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEE  390 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666666666665555555555555555555555555554221           111              222233


Q ss_pred             HHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699          168 IRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL  215 (264)
Q Consensus       168 lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEla  215 (264)
                      ++.|+..++..++-       .--.+++||..|..+-+|++.-++--+
T Consensus       391 ~~~E~~~~k~E~e~-------~ka~i~t~E~rL~aa~ke~eaaKasEa  431 (522)
T PF05701_consen  391 AKEEVEKAKEEAEQ-------TKAAIKTAEERLEAALKEAEAAKASEA  431 (522)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333322       223467889999999999888887533

Several sequences in this family are described as being myosin heavy chain-like.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.67  E-value=0.051  Score=51.31  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=21.8

Q ss_pred             ccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH
Q 024699           59 HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE   93 (264)
Q Consensus        59 RLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e   93 (264)
                      -|...+..|++|.......+..+....+.+...++
T Consensus       153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~  187 (325)
T PF08317_consen  153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKA  187 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555666777777776666666666666654443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.66  E-value=0.11  Score=54.34  Aligned_cols=29  Identities=28%  Similarity=0.406  Sum_probs=14.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          115 PVRAEVVQLRAEVQKLNSSRQELTTQIKG  143 (264)
Q Consensus       115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~  143 (264)
                      .+|.||.|++.|...|..--++|+...|.
T Consensus       457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~  485 (697)
T PF09726_consen  457 SLKSELSQLRQENEQLQNKLQNLVQARQQ  485 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555544444444444433

; GO: 0016021 integral to membrane

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=96.53  E-value=0.061  Score=44.89  Aligned_cols=72  Identities=21%  Similarity=0.389  Sum_probs=60.5

Q ss_pred             hhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699          105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF  179 (264)
Q Consensus       105 KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~  179 (264)
                      +|-+.||..   -.|+.+++.++.+|...|..|..++-.++.+...+++..++++.|+.+++.|.+.++-+--.|
T Consensus        20 ~L~s~lr~~---E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell   91 (120)
T PF12325_consen   20 RLQSQLRRL---EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL   91 (120)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344545433   368999999999999999999999999999999999999999999999999998877665444

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.52  E-value=0.72  Score=43.14  Aligned_cols=62  Identities=16%  Similarity=0.241  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 024699          161 MRADIDGIRSELVEARRAFEFEKKA-NEEQIEQKQAMENNLISMAREIEKLRAELLNTERRAC  222 (264)
Q Consensus       161 l~aEie~lrqElqr~Raa~EyEKk~-~~e~~Eq~qaMEknlismarEvEKLRaElanae~ra~  222 (264)
                      ++++++.+++++..+++.+.-.+.. ..+..++....+.++..+..+++.++..+.+..-+|+
T Consensus       215 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP  277 (423)
T TIGR01843       215 LEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRSP  277 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECC
Confidence            3344444444444444444333222 2223344556666666666667777777777666664

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR00606 rad50 rad50

Probab=96.50  E-value=0.29  Score=54.06  Aligned_cols=62  Identities=16%  Similarity=0.281  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHH---hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024699          159 IAMRADIDGIRSELVEA---RRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERR  220 (264)
Q Consensus       159 pal~aEie~lrqElqr~---Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~r  220 (264)
                      +.+..+.+.+..+|..+   -..+.-++-...+.+.+.+..+..|-.+..+++++++++...+..
T Consensus       846 e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~  910 (1311)
T TIGR00606       846 ELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ  910 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666666   344444455555567777888888888888888888888776543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.47  E-value=0.48  Score=51.82  Aligned_cols=32  Identities=22%  Similarity=0.242  Sum_probs=13.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699          185 ANEEQIEQKQAMENNLISMAREIEKLRAELLN  216 (264)
Q Consensus       185 ~~~e~~Eq~qaMEknlismarEvEKLRaElan  216 (264)
                      ...++.++....++.+.++..++.+++.+..+
T Consensus       857 ~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~  888 (1163)
T COG1196         857 ELEELKEELEELEAEKEELEDELKELEEEKEE  888 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.47  E-value=0.49  Score=51.74  Aligned_cols=38  Identities=32%  Similarity=0.575  Sum_probs=15.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL  151 (264)
Q Consensus       114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~  151 (264)
                      +.++.++..+..++..+......|..+++.+..++.+.
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~  416 (1163)
T COG1196         379 EALREELAELEAELAEIRNELEELKREIESLEERLERL  416 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444433333

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=96.42  E-value=0.53  Score=46.03  Aligned_cols=25  Identities=12%  Similarity=0.143  Sum_probs=18.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhh
Q 024699          157 QLIAMRADIDGIRSELVEARRAFEF  181 (264)
Q Consensus       157 qipal~aEie~lrqElqr~Raa~Ey  181 (264)
                      .+..+..+|+.++.++..+++.+.-
T Consensus       237 ~~~~~~~~i~~l~~~i~~~~~~~~~  261 (457)
T TIGR01000       237 ILATIQQQIDQLQKSIASYQVQKAG  261 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5667777888888888888777764

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.37  E-value=0.48  Score=53.59  Aligned_cols=158  Identities=16%  Similarity=0.193  Sum_probs=118.5

Q ss_pred             ccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHH--HHhh-----------hhhHHhhh----hchhHHHHHHHH
Q 024699           61 IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTREL--FDRG-----------LKLEVELR----ASEPVRAEVVQL  123 (264)
Q Consensus        61 aathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l--~ek~-----------~KmEAelr----a~e~lk~El~q~  123 (264)
                      ..+|..|+++...+++..+.+.+.+-++.-=.+  .|.+  |+.+           -+++..|.    ..+.++.++.++
T Consensus       934 p~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qa 1011 (1486)
T PRK04863        934 PEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQ--RRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQA 1011 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999887776652111  1111  1111           11222111    234566777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---------HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 024699          124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA---------MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQ  194 (264)
Q Consensus       124 raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipa---------l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q  194 (264)
                      +.+.++....-..+...++.+.+.|..++.+++.++.         .++.-|.|.+.|...|+-..+--|.....-..++
T Consensus      1012 q~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe 1091 (1486)
T PRK04863       1012 QAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMD 1091 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777888888888888888888887752         3334489999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024699          195 AMENNLISMAREIEKLRAELLNTERR  220 (264)
Q Consensus       195 aMEknlismarEvEKLRaElanae~r  220 (264)
                      .++++|-...++...++++|.++..+
T Consensus      1092 ~L~kkL~~~~~e~~~~re~I~~aK~~ 1117 (1486)
T PRK04863       1092 NLTKKLRKLERDYHEMREQVVNAKAG 1117 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998654

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.34  E-value=1.1  Score=44.76  Aligned_cols=154  Identities=19%  Similarity=0.285  Sum_probs=91.8

Q ss_pred             HHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHH----HH
Q 024699           48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV----QL  123 (264)
Q Consensus        48 ~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~----q~  123 (264)
                      .|++.-..|-+-.-..-.++++++..|+||+.++.....+++++    +--|.+.-.++|+++.+.-+=.++|+    |+
T Consensus       109 ~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr----l~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Ql  184 (499)
T COG4372         109 SELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR----LKTLAEQRRQLEAQAQSLQASQKQLQASATQL  184 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555566788999999999999999999998854    56688889999998888655555554    33


Q ss_pred             HHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHhhhhhhhhhhhHHH
Q 024699          124 RAEVQKLNSS-------RQELT---TQIKGLTKDVNRLEAENKQLIAMRAD----IDGIRSELVEARRAFEFEKKANEEQ  189 (264)
Q Consensus       124 raE~q~L~~~-------RQeL~---~qvq~l~qeL~r~~ad~qqipal~aE----ie~lrqElqr~Raa~EyEKk~~~e~  189 (264)
                      ..+++.|...       -++|.   ..+|..++||++..+-.||...-...    |+..-+++- +|+      .--.+.
T Consensus       185 k~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~ia-ar~------e~I~~r  257 (499)
T COG4372         185 KSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIA-ARA------EQIRER  257 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHH------HHHHHH
Confidence            3333333221       11221   23455777777776666655433222    222222221 111      111233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 024699          190 IEQKQAMENNLISMAREIEKLRA  212 (264)
Q Consensus       190 ~Eq~qaMEknlismarEvEKLRa  212 (264)
                      -++.|..|.-..-+-+||+.|.+
T Consensus       258 e~~lq~lEt~q~~leqeva~le~  280 (499)
T COG4372         258 ERQLQRLETAQARLEQEVAQLEA  280 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677777777777766654

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.32  E-value=0.5  Score=39.22  Aligned_cols=123  Identities=24%  Similarity=0.261  Sum_probs=72.0

Q ss_pred             HHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK  146 (264)
Q Consensus        67 LrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~q  146 (264)
                      |+-++..+...+......+..++.|-+.+..-.-+-=-|-|.||-.+...-++|.+++.++..+.....+|...++....
T Consensus         8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~   87 (132)
T PF07926_consen    8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKA   87 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444455555555555555544444445566666666555566777777777766666666666666666


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 024699          147 DVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA  195 (264)
Q Consensus       147 eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa  195 (264)
                      .|.......      ..+-..|..|+.-+..-|+.-.+-|.=+..|+..
T Consensus        88 ~l~~~e~sw------~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen   88 ELEESEASW------EEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            665544432      3444556666666666666666666666666543

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.31  E-value=0.5  Score=43.84  Aligned_cols=131  Identities=20%  Similarity=0.310  Sum_probs=80.8

Q ss_pred             HhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH----------HHHHHHHHhhhhhHHhhhhchhHHH
Q 024699           49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE----------AHTRELFDRGLKLEVELRASEPVRA  118 (264)
Q Consensus        49 EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e----------~q~R~l~ek~~KmEAelra~e~lk~  118 (264)
                      .||.|-..+-||..-.--.+.+|..++-|+-+++....+++.+.|          ..++++=+|+.+.|-.+-++--. .
T Consensus        11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~-~   89 (239)
T COG1579          11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDE-R   89 (239)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-H
Confidence            344555556666655556667777777777777777666665554          45566666666666666333333 5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 024699          119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK  183 (264)
Q Consensus       119 El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEK  183 (264)
                      |+.++..|++.+..-.-.|..++..+..++.+++..   +-.++..+..+...+--++..++.+=
T Consensus        90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~---i~~l~~~~~~~e~~~~e~~~~~e~e~  151 (239)
T COG1579          90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKE---IEDLKERLERLEKNLAEAEARLEEEV  151 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666777777777666666666666666666655432   34555555666666666666655543

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.26  E-value=0.28  Score=50.40  Aligned_cols=150  Identities=19%  Similarity=0.316  Sum_probs=111.2

Q ss_pred             cchHHHHHHHHhh-HHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           62 DDNTHLQRELTAS-KDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ  140 (264)
Q Consensus        62 athvaLrqeLaaa-q~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~q  140 (264)
                      +.--.+-+||... .+..+.++..|.+++    .+-++|++++.-.|++=...+.++..-.-++.|+.++.++=..+..+
T Consensus       213 d~~~~~~~Elk~~l~~~~~~i~~~ie~l~----~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k  288 (581)
T KOG0995|consen  213 DNSSELEDELKHRLEKYFTSIANEIEDLK----KTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSK  288 (581)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            3333444554432 222333444444444    56788888888777777777899888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Q 024699          141 IKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK----QAMENNLISMAREIEKLRAELLN  216 (264)
Q Consensus       141 vq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~----qaMEknlismarEvEKLRaElan  216 (264)
                      .+.+.+.|.+++++.   -....|++.|+++...++.-||.- +-..+-+++|    +..+++|.-|..++++|+-++=+
T Consensus       289 ~~~~~~~l~~l~~Ei---e~kEeE~e~lq~~~d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~  364 (581)
T KOG0995|consen  289 KQHMEKKLEMLKSEI---EEKEEEIEKLQKENDELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWE  364 (581)
T ss_pred             hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999886   456688999999999999998875 5555666654    56778888888888888877655


Q ss_pred             hhh
Q 024699          217 TER  219 (264)
Q Consensus       217 ae~  219 (264)
                      .+-
T Consensus       365 ~~l  367 (581)
T KOG0995|consen  365 LKL  367 (581)
T ss_pred             HHH
Confidence            543

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.25  E-value=0.56  Score=54.22  Aligned_cols=134  Identities=23%  Similarity=0.268  Sum_probs=89.7

Q ss_pred             hhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHH
Q 024699           51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKL  130 (264)
Q Consensus        51 qrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L  130 (264)
                      ...-.-|-.|=-+...|+||+..+.-|+++..+.+..+..-.-.----|.+.-.++|.=....+....|+.+...++++|
T Consensus      1396 e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl 1475 (1930)
T KOG0161|consen 1396 EAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKL 1475 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            33334444555567778888888888888887666655432222111222222233332334456677777788888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024699          131 NSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK  184 (264)
Q Consensus       131 ~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk  184 (264)
                      ...=.++..++..+..+-..++.++..+..-..|...-.+|++..+.+++.||.
T Consensus      1476 ~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~ 1529 (1930)
T KOG0161|consen 1476 KNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKE 1529 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888743

>PRK02224 chromosome segregation protein; Provisional

Probab=96.22  E-value=0.53  Score=49.14  Aligned_cols=19  Identities=11%  Similarity=0.087  Sum_probs=9.2

Q ss_pred             hHHHHHHHHHHhhhhcccc
Q 024699           39 LEEEIEIQRREMHRIISEN   57 (264)
Q Consensus        39 LEe~l~~Q~~EiqrLl~dN   57 (264)
                      +-..+..|..++.+.+.+-
T Consensus       181 ~~~~~~~~~~~~~~~l~~~  199 (880)
T PRK02224        181 VLSDQRGSLDQLKAQIEEK  199 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444555555554444444

>TIGR00606 rad50 rad50

Probab=96.19  E-value=0.63  Score=51.50  Aligned_cols=55  Identities=9%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 024699          166 DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRAC  222 (264)
Q Consensus       166 e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~ra~  222 (264)
                      ..+.+|+..++..+.--+..++.++.+++.++.++-.+-.|++.  .+..|++++.+
T Consensus      1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~ryr 1104 (1311)
T TIGR00606      1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKYR 1104 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHH
Confidence            56677777777777777788899999999999999999999855  56667766654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=96.18  E-value=0.86  Score=47.40  Aligned_cols=14  Identities=29%  Similarity=0.427  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHh
Q 024699          202 SMAREIEKLRAELL  215 (264)
Q Consensus       202 smarEvEKLRaEla  215 (264)
                      ....++.+|++++.
T Consensus       402 ~l~~~i~~l~~~~~  415 (880)
T PRK03918        402 EIEEEISKITARIG  415 (880)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444444433

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.16  E-value=0.58  Score=49.82  Aligned_cols=90  Identities=26%  Similarity=0.302  Sum_probs=71.5

Q ss_pred             HHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhh--------------------hhHhhhhhHHHHHHHHHh
Q 024699           43 IEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI--------------------IPKLRADKEAHTRELFDR  102 (264)
Q Consensus        43 l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~--------------------~~~l~ae~e~q~R~l~ek  102 (264)
                      +..-..+.+.+-.+|+++..+--+|+.+| -++.|+.+|.+.                    +..+.+|+|.+.+++..-
T Consensus        55 l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~l  133 (775)
T PF10174_consen   55 LSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERL  133 (775)
T ss_pred             HHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456678888899999999999999999 999999998875                    455678888888887766


Q ss_pred             hhhhHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 024699          103 GLKLEVELRASEPVRAEVVQLRAEVQKLNSS  133 (264)
Q Consensus       103 ~~KmEAelra~e~lk~El~q~raE~q~L~~~  133 (264)
                      ..++|.-=--.+.+++++.....+|.+|...
T Consensus       134 r~~lE~~q~~~e~~q~~l~~~~eei~kL~e~  164 (775)
T PF10174_consen  134 RKTLEELQLRIETQQQTLDKADEEIEKLQEM  164 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666554446688888999888888888774

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.07  E-value=0.91  Score=46.64  Aligned_cols=77  Identities=18%  Similarity=0.317  Sum_probs=48.9

Q ss_pred             hhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhH--------------hhhhhH---HHHHHH
Q 024699           37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK--------------LRADKE---AHTREL   99 (264)
Q Consensus        37 ~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~--------------l~ae~e---~q~R~l   99 (264)
                      .+|+.+++.-..|-..|+..|..|-..-..|+.++...+.+|.........              +..|++   .+.-++
T Consensus       139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~  218 (546)
T PF07888_consen  139 QLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA  218 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468888888778888898888888777777766666666555444333332              233333   334445


Q ss_pred             HHhhhhhHHhhhhc
Q 024699          100 FDRGLKLEVELRAS  113 (264)
Q Consensus       100 ~ek~~KmEAelra~  113 (264)
                      .+++.++|.++.+.
T Consensus       219 ~~ri~~LEedi~~l  232 (546)
T PF07888_consen  219 RQRIRELEEDIKTL  232 (546)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66667777666543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=95.72  E-value=1.6  Score=43.06  Aligned_cols=12  Identities=17%  Similarity=0.365  Sum_probs=4.6

Q ss_pred             HHHHHhhhhhHH
Q 024699           97 RELFDRGLKLEV  108 (264)
Q Consensus        97 R~l~ek~~KmEA  108 (264)
                      -++..+...++.
T Consensus       223 ~~l~~~~~~l~~  234 (562)
T PHA02562        223 DELVEEAKTIKA  234 (562)
T ss_pred             HHHHHHHHHHHH
Confidence            333333334433

>PF13514 AAA_27: AAA domain

Probab=95.71  E-value=2.3  Score=46.38  Aligned_cols=135  Identities=19%  Similarity=0.304  Sum_probs=88.2

Q ss_pred             HHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH-----HHHHHHHHhhhhhHHhhhhc-------
Q 024699           46 QRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE-----AHTRELFDRGLKLEVELRAS-------  113 (264)
Q Consensus        46 Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e-----~q~R~l~ek~~KmEAelra~-------  113 (264)
                      +..++++=+.+..--+.+...|++++..++++++.+...+..++.+..     .++..++.....++++|-..       
T Consensus       158 ~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p  237 (1111)
T PF13514_consen  158 ELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFP  237 (1111)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCC
Confidence            344444445555556677888888999999999988888888887766     55566777777777776632       


Q ss_pred             --------------hhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 024699          114 --------------EPVRAEVVQLRAEVQKLNSSRQE---------LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS  170 (264)
Q Consensus       114 --------------e~lk~El~q~raE~q~L~~~RQe---------L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrq  170 (264)
                                    ..+..++..+..++..|....+.         ....|..|.+.+.......+.+|.+..++..++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~  317 (1111)
T PF13514_consen  238 EDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELEA  317 (1111)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          12223333333333333333322         2234445666667777778888999999988888


Q ss_pred             HHHHHhhhhh
Q 024699          171 ELVEARRAFE  180 (264)
Q Consensus       171 Elqr~Raa~E  180 (264)
                      ++..+-+.+.
T Consensus       318 ~~~~~~~~lg  327 (1111)
T PF13514_consen  318 ELRALLAQLG  327 (1111)
T ss_pred             HHHHHHHhcC
Confidence            8888777766

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=95.65  E-value=0.43  Score=41.38  Aligned_cols=40  Identities=10%  Similarity=0.241  Sum_probs=22.0

Q ss_pred             hhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH
Q 024699           51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE   93 (264)
Q Consensus        51 qrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e   93 (264)
                      ..++.+|-..+.+.++-+.++...   ...+.+.+..+++|-.
T Consensus        29 ~~~l~~~~~~~~~~~vtk~d~e~~---~~~~~a~~~eLr~el~   68 (177)
T PF07798_consen   29 REVLNDSLEKVAQDLVTKSDLENQ---EYLFKAAIAELRSELQ   68 (177)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            345566655555556666665543   3344566666775543

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=95.53  E-value=1.5  Score=44.49  Aligned_cols=163  Identities=17%  Similarity=0.256  Sum_probs=95.9

Q ss_pred             cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH-HHHHHHHHhhhh----hHHhhhhchhHHHHHHHHHHHHHHHHH
Q 024699           58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE-AHTRELFDRGLK----LEVELRASEPVRAEVVQLRAEVQKLNS  132 (264)
Q Consensus        58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e-~q~R~l~ek~~K----mEAelra~e~lk~El~q~raE~q~L~~  132 (264)
                      +...-+|..+-.+|...+..|......+..+.-+.= ..+..+-+++-.    ||.|+.|..-+......+...+..+..
T Consensus       245 ~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e  324 (569)
T PRK04778        245 EGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKE  324 (569)
T ss_pred             cCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            567778888999999999999998777777765442 333333333333    344455555554544444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-------HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024699          133 SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS-------ELVEARRAFEFEKKANEEQIEQKQAMENNLISMAR  205 (264)
Q Consensus       133 ~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrq-------Elqr~Raa~EyEKk~~~e~~Eq~qaMEknlismar  205 (264)
                      .-++|..+++.+.+...-...|+..+-.+..+|+.+..       .+......|..-++...++.++...+++....+..
T Consensus       325 ~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e  404 (569)
T PRK04778        325 QNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSE  404 (569)
T ss_pred             HHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555554444322222334444444444444444       44444445555556667777777788888888888


Q ss_pred             HHHHHHHHHhhhhhc
Q 024699          206 EIEKLRAELLNTERR  220 (264)
Q Consensus       206 EvEKLRaElanae~r  220 (264)
                      .|..||.+...+.+.
T Consensus       405 ~l~~Lrk~E~eAr~k  419 (569)
T PRK04778        405 MLQGLRKDELEAREK  419 (569)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888877666443

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.52  E-value=0.69  Score=39.72  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=19.1

Q ss_pred             cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH
Q 024699           58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE   93 (264)
Q Consensus        58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e   93 (264)
                      .++...-..+.+.|...++|+..+...+..+..+-+
T Consensus        77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~  112 (191)
T PF04156_consen   77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELE  112 (191)
T ss_pred             hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445556666666666666555555554333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=95.47  E-value=1.1  Score=45.60  Aligned_cols=174  Identities=15%  Similarity=0.239  Sum_probs=125.5

Q ss_pred             hHHHHHHHHHHhhh----hcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH--------HHHHHHHHhhhhh
Q 024699           39 LEEEIEIQRREMHR----IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE--------AHTRELFDRGLKL  106 (264)
Q Consensus        39 LEe~l~~Q~~Eiqr----Ll~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e--------~q~R~l~ek~~Km  106 (264)
                      +...+-.|-.|++.    +..  +.+.-.|..+-.+|...+..|..+...+..+.-+.=        .+|-.||+   .|
T Consensus       220 l~~~~P~ql~eL~~gy~~m~~--~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd---~l  294 (560)
T PF06160_consen  220 LQKEFPDQLEELKEGYREMEE--EGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYD---IL  294 (560)
T ss_pred             HHHHhHHHHHHHHHHHHHHHH--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH---HH
Confidence            34455566666543    333  446777888999999999999888888877654432        23333333   46


Q ss_pred             HHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 024699          107 EVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN  186 (264)
Q Consensus       107 EAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~  186 (264)
                      |.|+.|...+...+..+..-+..+...-++|..++..+.+--.=...+...+-.+..+|+.+...+......++..+..+
T Consensus       295 e~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~y  374 (560)
T PF06160_consen  295 EKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPY  374 (560)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCH
Confidence            78888888888888777777777777667777766666665544456788888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699          187 EEQIEQKQAMENNLISMAREIEKLRAELLNT  217 (264)
Q Consensus       187 ~e~~Eq~qaMEknlismarEvEKLRaElana  217 (264)
                      .+..+.++.+.++|-.+-.+..++...|.+.
T Consensus       375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L  405 (560)
T PF06160_consen  375 SEIQEELEEIEEQLEEIEEEQEEINESLQSL  405 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888777777655555555443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PHA02562 46 endonuclease subunit; Provisional

Probab=95.39  E-value=1.8  Score=42.62  Aligned_cols=52  Identities=12%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699          126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR  177 (264)
Q Consensus       126 E~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Ra  177 (264)
                      .+..|...+.+|..++..+...+..++....++-.+...+..++.++...|.
T Consensus       300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~  351 (562)
T PHA02562        300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQ  351 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444443333333333333333333333333333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=95.38  E-value=0.53  Score=39.35  Aligned_cols=82  Identities=20%  Similarity=0.347  Sum_probs=66.0

Q ss_pred             hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 024699          111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQI  190 (264)
Q Consensus       111 ra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~  190 (264)
                      ..++-|...|.+..+|+..|...-..|..+-..+++||.++-..+..+-+...+++.|+.|+..+..-++--=-..-|..
T Consensus        16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~   95 (120)
T PF12325_consen   16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKS   95 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            45678999999999999999999999999999999999999999999989999999999998877765543333333444


Q ss_pred             HH
Q 024699          191 EQ  192 (264)
Q Consensus       191 Eq  192 (264)
                      |+
T Consensus        96 E~   97 (120)
T PF12325_consen   96 EE   97 (120)
T ss_pred             HH
Confidence            43

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=95.34  E-value=2  Score=44.63  Aligned_cols=149  Identities=18%  Similarity=0.288  Sum_probs=88.9

Q ss_pred             HHHHHHHHhhHHHHHHHhhhhhHhhhhhHH---HHHHHHHhhhhhHHhhhhch------hHHHHHHHHHHHHHHHHHHHH
Q 024699           65 THLQRELTASKDEIHRLGQIIPKLRADKEA---HTRELFDRGLKLEVELRASE------PVRAEVVQLRAEVQKLNSSRQ  135 (264)
Q Consensus        65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~e~---q~R~l~ek~~KmEAelra~e------~lk~El~q~raE~q~L~~~RQ  135 (264)
                      ..|+.+-+..++.++-|+.-+..++.|++.   +|.+|=..+.+|...+....      .....-.++..|++.|.....
T Consensus        18 ~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE   97 (617)
T PF15070_consen   18 QQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELE   97 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHH
Confidence            458888889999999999999999999984   44555566666665544221      011112355666666655555


Q ss_pred             HHHHHHHHHHHH---HHHHH-HhhhhhHHHH----------HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 024699          136 ELTTQIKGLTKD---VNRLE-AENKQLIAMR----------ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLI  201 (264)
Q Consensus       136 eL~~qvq~l~qe---L~r~~-ad~qqipal~----------aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknli  201 (264)
                      .|.++++....+   |.++. .--.+|-.+.          .+...|-..++.-++++.---.-|.++-+|+..|+..+|
T Consensus        98 ~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv  177 (617)
T PF15070_consen   98 SLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFV  177 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            566555554322   22221 1112233332          223333334444444444444568899999999999999


Q ss_pred             HHHHH----HHHHHHH
Q 024699          202 SMARE----IEKLRAE  213 (264)
Q Consensus       202 smarE----vEKLRaE  213 (264)
                      .|..|    ..+|-+|
T Consensus       178 ~ltne~~elt~~lq~E  193 (617)
T PF15070_consen  178 KLTNENMELTSALQSE  193 (617)
T ss_pred             HHHHhhhHhhHHHHHH
Confidence            99888    4555544

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.31  E-value=2  Score=44.28  Aligned_cols=54  Identities=24%  Similarity=0.322  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 024699          159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMA----REIEKLRA  212 (264)
Q Consensus       159 pal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisma----rEvEKLRa  212 (264)
                      --|++|+..|+.+|.++|..++-|.-.+.++.-+.|.+.+.|--|-    .||.-++.
T Consensus       172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~  229 (546)
T KOG0977|consen  172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERR  229 (546)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            5678899999999999999999999999999999999999998887    45655554

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.29  E-value=2.1  Score=39.79  Aligned_cols=132  Identities=22%  Similarity=0.237  Sum_probs=68.2

Q ss_pred             HHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           71 LTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR  150 (264)
Q Consensus        71 Laaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r  150 (264)
                      |+....++-++..-+..++.+-+..--++-.....+++=--+.+.|+.++-+...|++++..-...+..+....+. ...
T Consensus        12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~-~~e   90 (239)
T COG1579          12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD-ERE   90 (239)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHH
Confidence            3344444444444444433333322222222333333333344456666666666666665555555444422221 112


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 024699          151 LEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISM  203 (264)
Q Consensus       151 ~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlism  203 (264)
                      ..+=..-+..++..+.+|..||.++.-.++.-.+--.+..+....+|+|+...
T Consensus        91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~  143 (239)
T COG1579          91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA  143 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222233444455566677777777777766677777777888888877644

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.28  E-value=2.6  Score=39.45  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024699          194 QAMENNLISMAREIEKLRAELLNTERR  220 (264)
Q Consensus       194 qaMEknlismarEvEKLRaElanae~r  220 (264)
                      ...+..+..+..++.++++++..++..
T Consensus       242 ~~~~~~l~~~~~~l~~~~~~l~~~~~~  268 (423)
T TIGR01843       242 EEVLEELTEAQARLAELRERLNKARDR  268 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455566667777788777776543

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=95.16  E-value=1.9  Score=37.39  Aligned_cols=17  Identities=29%  Similarity=0.475  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHhhhh
Q 024699          202 SMAREIEKLRAELLNTE  218 (264)
Q Consensus       202 smarEvEKLRaElanae  218 (264)
                      .+..||..||++|+++.
T Consensus       135 ki~~ei~~lr~~iE~~K  151 (177)
T PF07798_consen  135 KIDTEIANLRTEIESLK  151 (177)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45667778888888653

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.06  E-value=1.3  Score=43.41  Aligned_cols=50  Identities=16%  Similarity=0.330  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699          131 NSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE  180 (264)
Q Consensus       131 ~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E  180 (264)
                      .+....|..++..+.+++++++.+.+++|....|+..|..|+.-.+..|+
T Consensus       323 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~  372 (498)
T TIGR03007       323 EAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYE  372 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444555555555666666666666666666666555555554443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=95.05  E-value=4.6  Score=42.88  Aligned_cols=173  Identities=22%  Similarity=0.309  Sum_probs=89.5

Q ss_pred             CCCchhhHHHHHHHHHHh----hhhccccc------cc--ccchHHHH--HHHHhhH-HHHHHHhhhhhHhhhhhHHHHH
Q 024699           33 HFHPMTLEEEIEIQRREM----HRIISENR------HA--IDDNTHLQ--RELTASK-DEIHRLGQIIPKLRADKEAHTR   97 (264)
Q Consensus        33 pp~P~~LEe~l~~Q~~Ei----qrLl~dNq------RL--aathvaLr--qeLaaaq-~Elqrl~~~~~~l~ae~e~q~R   97 (264)
                      |.|-.++|-+...|+--+    +...+|-+      |-  ...-.+|.  -||..-| |||+||-.-...++.-.-.|-.
T Consensus        15 ~~~~~~~e~r~~~qr~~~~~~e~~~~~~~~~p~~r~Rs~~~~~s~~lsqqaelis~qlqE~rrle~e~~~lre~sl~qkm   94 (739)
T PF07111_consen   15 PAHQDVSERRRENQRPQVTMWEQDVSGDGQEPGRRGRSLELEGSQALSQQAELISRQLQELRRLEEEVRALRETSLQQKM   94 (739)
T ss_pred             ccchhHHHhhhhhcCchhHHHHhcccccccCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456788888877776221    11222222      11  11222344  4666666 9999998877777644333444


Q ss_pred             HHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699           98 ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR  177 (264)
Q Consensus        98 ~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Ra  177 (264)
                      -|--.++-||+--++-.+-++|...+++=+-+-...|+-|-   ++..++|..++..=      +.+|..|.++++.+=+
T Consensus        95 rLe~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lE---E~~q~ELee~q~~H------qeql~~Lt~aHq~~l~  165 (739)
T PF07111_consen   95 RLEAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLE---EGSQRELEEAQRLH------QEQLSSLTQAHQEALA  165 (739)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhH---HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence            44444444444444444445555555544444444555553   22333443333222      2567777777765433


Q ss_pred             hhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhh
Q 024699          178 AFEFEKKANEEQIEQKQAM-------ENNLISMAREIEKLRAELLNT  217 (264)
Q Consensus       178 a~EyEKk~~~e~~Eq~qaM-------EknlismarEvEKLRaElana  217 (264)
                      .+   ++..-++.+.++.|       -|+|...-+|.+-||.+|.++
T Consensus       166 sL---~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~  209 (739)
T PF07111_consen  166 SL---TSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKT  209 (739)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22   12222233333333       356777777888888888776

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=94.88  E-value=1.5  Score=44.05  Aligned_cols=84  Identities=19%  Similarity=0.256  Sum_probs=49.9

Q ss_pred             hHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhh------chhHHHHHHHHHHHHHHHHHHHHHH
Q 024699           64 NTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA------SEPVRAEVVQLRAEVQKLNSSRQEL  137 (264)
Q Consensus        64 hvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra------~e~lk~El~q~raE~q~L~~~RQeL  137 (264)
                      .-.++.++...++|+.--..-...+-..+|.-|-.|=.++..  -.+..      .+.++.|...++.|++.|...-+.|
T Consensus       223 l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~--~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l  300 (511)
T PF09787_consen  223 LELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE--EGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQL  300 (511)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc--cccccccchhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555544455555666555555553333  11222      4678888888888888888777777


Q ss_pred             HHHHHHHHHHHH
Q 024699          138 TTQIKGLTKDVN  149 (264)
Q Consensus       138 ~~qvq~l~qeL~  149 (264)
                      ..+++.+..++.
T Consensus       301 ~~e~~d~e~~~~  312 (511)
T PF09787_consen  301 RAELQDLEAQLE  312 (511)
T ss_pred             HHHHHHHHHHHH
Confidence            777766555544

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=94.86  E-value=3.8  Score=39.14  Aligned_cols=111  Identities=18%  Similarity=0.245  Sum_probs=74.1

Q ss_pred             chHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           63 DNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK  142 (264)
Q Consensus        63 thvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq  142 (264)
                      -|..++|....++.|+.-...--..+.+|-|.|+-.+-.+..+++++..   -|+-|+....   .++...+-+.-.++.
T Consensus        21 l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nq---rl~~E~e~~K---ek~e~q~~q~y~q~s   94 (333)
T KOG1853|consen   21 LHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQ---RLTTEQERNK---EKQEDQRVQFYQQES   94 (333)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            3778899999999999999988899999999888888888888887432   3333333221   133344444445566


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699          143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF  179 (264)
Q Consensus       143 ~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~  179 (264)
                      .|..||.+.++-..|+-.-..||+-.--.|-++..+-
T Consensus        95 ~Leddlsqt~aikeql~kyiReLEQaNDdLErakRat  131 (333)
T KOG1853|consen   95 QLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRAT  131 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhh
Confidence            6777777666666666666666665555555554443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.84  E-value=0.98  Score=43.09  Aligned_cols=108  Identities=20%  Similarity=0.242  Sum_probs=51.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------hhhhHHHHHHHHHHHHH
Q 024699          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----------------------NKQLIAMRADIDGIRSE  171 (264)
Q Consensus       114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad----------------------~qqipal~aEie~lrqE  171 (264)
                      +.|+.|...+-.+++.+...--+|....+.|..++..++.-                      .+.+-..+.+++.++.+
T Consensus       154 ~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~  233 (312)
T smart00787      154 EGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEE  233 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555555544444443332                      23334444444555555


Q ss_pred             HHHHhhhhhhhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhcc
Q 024699          172 LVEARRAFEFEKKANEEQIEQKQAMENNL----ISMAREIEKLRAELLNTERRA  221 (264)
Q Consensus       172 lqr~Raa~EyEKk~~~e~~Eq~qaMEknl----ismarEvEKLRaElanae~ra  221 (264)
                      ++...+.|+--++...+..++.+.-|+-+    .-=..||.+|++.+..-++..
T Consensus       234 l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~  287 (312)
T smart00787      234 LQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLT  287 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            55555555555555555555555544422    111344555555555555443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.83  E-value=0.84  Score=43.36  Aligned_cols=96  Identities=20%  Similarity=0.340  Sum_probs=52.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK  193 (264)
Q Consensus       114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~  193 (264)
                      .....+..++..|++.|.....+|..++..+.++-..+..++..+-.-..+++....++-+....+..+.   .+..+..
T Consensus        39 ~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l---~~~~~e~  115 (314)
T PF04111_consen   39 SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLEL---IEFQEER  115 (314)
T ss_dssp             ---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            3444555666666666666666666666666666666655554444444455544455555555555443   3344455


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 024699          194 QAMENNLISMAREIEKLRA  212 (264)
Q Consensus       194 qaMEknlismarEvEKLRa  212 (264)
                      +.++..+..+...+++|+.
T Consensus       116 ~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen  116 DSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            5556666666666666653

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.70  E-value=1.3  Score=42.34  Aligned_cols=95  Identities=21%  Similarity=0.271  Sum_probs=42.6

Q ss_pred             ccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           59 HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELT  138 (264)
Q Consensus        59 RLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~  138 (264)
                      .|...+..|+.|....-..+..+....+.++.-.+ .+..=+....+...++...+  ..||.+++.++..+...-....
T Consensus       148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~-~L~~e~~~L~~~~~e~~~~d--~~eL~~lk~~l~~~~~ei~~~~  224 (312)
T smart00787      148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKD-ALEEELRQLKQLEDELEDCD--PTELDRAKEKLKKLLQEIMIKV  224 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666666655555553222 11111122222223333322  1344445544444444444444


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 024699          139 TQIKGLTKDVNRLEAENK  156 (264)
Q Consensus       139 ~qvq~l~qeL~r~~ad~q  156 (264)
                      .++..+.++|..+.+++.
T Consensus       225 ~~l~e~~~~l~~l~~~I~  242 (312)
T smart00787      225 KKLEELEEELQELESKIE  242 (312)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.67  E-value=4.4  Score=47.27  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q 024699          163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAME  197 (264)
Q Consensus       163 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaME  197 (264)
                      +.|..|.++|..-|++-.-.+|.+.++.+.+.+..
T Consensus      1104 ~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~ 1138 (1930)
T KOG0161|consen 1104 ARIKELEEELEAERASRAKAERQRRDLSEELEELK 1138 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=94.61  E-value=5.2  Score=42.81  Aligned_cols=177  Identities=16%  Similarity=0.214  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHH----------HHHhhhhhHH
Q 024699           39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE----------LFDRGLKLEV  108 (264)
Q Consensus        39 LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~----------l~ek~~KmEA  108 (264)
                      ++-.|.--..||..+-....-+...|..+|+.|.+.+.+|....+....+++|.|.=--.          --..+.+++.
T Consensus       292 ~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qe  371 (775)
T PF10174_consen  292 LKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQE  371 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556688888888888888888889999988888888888888888887632222          2223333444


Q ss_pred             hhhh----chhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 024699          109 ELRA----SEPVRAEVVQLRAEVQKLNSSRQELT----TQIKGLTKDVNRL--EAENKQLIAMRADIDGIRSELVEARRA  178 (264)
Q Consensus       109 elra----~e~lk~El~q~raE~q~L~~~RQeL~----~qvq~l~qeL~r~--~ad~qqipal~aEie~lrqElqr~Raa  178 (264)
                      |+-.    ++-++..+.....+|..|..--..|.    .+-..+.....|+  ++|....--+...||....|..+.+..
T Consensus       372 E~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~  451 (775)
T PF10174_consen  372 EKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQER  451 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            4322    12233333333333333333321122    2222233333333  355555555666777777777777766


Q ss_pred             hhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699          179 FEFEKKA-NEEQIEQKQAMENNLISMAREIEKLRAELL  215 (264)
Q Consensus       179 ~EyEKk~-~~e~~Eq~qaMEknlismarEvEKLRaEla  215 (264)
                      |+....- ..+..|+...+.+-+-..-.+|+.|..+|.
T Consensus       452 l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLs  489 (775)
T PF10174_consen  452 LEEQRERAEKERQEELETYQKELKELKAKLESLQKELS  489 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            6544221 113344555555555555555555555544

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.59  E-value=5.6  Score=39.86  Aligned_cols=26  Identities=38%  Similarity=0.404  Sum_probs=11.9

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699          152 EAENKQLIAMRADIDGIRSELVEARR  177 (264)
Q Consensus       152 ~ad~qqipal~aEie~lrqElqr~Ra  177 (264)
                      ..+.++|.+++++|..=+.|+..+++
T Consensus       167 ~~~~~~l~~~~~~iaaeq~~l~~~~~  192 (420)
T COG4942         167 KATLKQLAAVRAEIAAEQAELTTLLS  192 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555444444443333

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.53  E-value=5.1  Score=44.20  Aligned_cols=60  Identities=17%  Similarity=0.170  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699          159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE  218 (264)
Q Consensus       159 pal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae  218 (264)
                      .+-..+++.-.+|.+++-..+|..++....+-.|+..+++++-++..|+..|++.+.+++
T Consensus       804 e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~  863 (1174)
T KOG0933|consen  804 EESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE  863 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            344566677777777777777888887777778888888888888888888888887764

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.53  E-value=3.9  Score=42.35  Aligned_cols=155  Identities=19%  Similarity=0.279  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHhhhhcccccccccch----------HHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHH
Q 024699           39 LEEEIEIQRREMHRIISENRHAIDDN----------THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEV  108 (264)
Q Consensus        39 LEe~l~~Q~~EiqrLl~dNqRLaath----------vaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEA  108 (264)
                      |++-...+.-+|..|=..|+.|-...          -.||...+..+.|++...+.           +-.+-.+...|+.
T Consensus       226 l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y-----------~~~~~~k~~~~~~  294 (581)
T KOG0995|consen  226 LEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAY-----------VSQMKSKKQHMEK  294 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHH-----------HHHHHhhhHHHHH
Confidence            34444455566777766666654332          34445555555555555444           4455578888887


Q ss_pred             hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 024699          109 ELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG---LTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKA  185 (264)
Q Consensus       109 elra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~---l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~  185 (264)
                         ..+-|+.|+.....|+++|.....+|..+|..   -..|+.+...|..+   |..+|+.+.-|+.+.+.-+-..+-.
T Consensus       295 ---~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~---l~r~l~~i~~~~d~l~k~vw~~~l~  368 (581)
T KOG0995|consen  295 ---KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNK---LKRELNKIQSELDRLSKEVWELKLE  368 (581)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence               77889999999999999999999999988865   34555555555533   3344444444444444444333332


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          186 NEEQIEQKQAMENNLISMAREIEKLRAE  213 (264)
Q Consensus       186 ~~e~~Eq~qaMEknlismarEvEKLRaE  213 (264)
                      .   -.+-+..|+.++-.+.=+-+|---
T Consensus       369 ~---~~~f~~le~~~~~~~~l~~~i~l~  393 (581)
T KOG0995|consen  369 I---EDFFKELEKKFIDLNSLIRRIKLG  393 (581)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   344555666666666666665554

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.25  E-value=4.1  Score=36.94  Aligned_cols=154  Identities=25%  Similarity=0.385  Sum_probs=83.0

Q ss_pred             hhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHH
Q 024699           51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKL  130 (264)
Q Consensus        51 qrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L  130 (264)
                      ..|=..|+||+.....|+..+..+.+.-.+|..-|.+++    .+++.+ .+..      .-..+|+.|+..++..+.+|
T Consensus        11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~----~q~~s~-Qqal------~~aK~l~eEledLk~~~~~l   79 (193)
T PF14662_consen   11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLR----KQLKSL-QQAL------QKAKALEEELEDLKTLAKSL   79 (193)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHH
Confidence            345577999999999999999999999999999888887    445544 2221      12234555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHhhhhhHHHHHHHHHHHHHHHHH-------hh-hhhhhhhh------hHHH
Q 024699          131 NSSRQELTTQIKGLTKD-------VNRLEAENKQLIAMRADIDGIRSELVEA-------RR-AFEFEKKA------NEEQ  189 (264)
Q Consensus       131 ~~~RQeL~~qvq~l~qe-------L~r~~ad~qqipal~aEie~lrqElqr~-------Ra-a~EyEKk~------~~e~  189 (264)
                      .....-|.++...+.++       +..++-++.++   .+|+|++..-+.-+       .. -|+||.-.      -.+.
T Consensus        80 EE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl---~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~  156 (193)
T PF14662_consen   80 EEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL---LAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSER  156 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444443333332       22222222221   12222222111111       11 12444322      2344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699          190 IEQKQAMENNLISMAREIEKLRAELLNTE  218 (264)
Q Consensus       190 ~Eq~qaMEknlismarEvEKLRaElanae  218 (264)
                      .-|.....+-+.-...=++-||+|+...+
T Consensus       157 t~~i~eL~~~ieEy~~~teeLR~e~s~LE  185 (193)
T PF14662_consen  157 TQQIEELKKTIEEYRSITEELRLEKSRLE  185 (193)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555556666666666788888887654

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.25  E-value=1.5  Score=39.75  Aligned_cols=82  Identities=22%  Similarity=0.327  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HHHHHHH-HhhhhhhhhhhhHHH
Q 024699          115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG----IRSELVE-ARRAFEFEKKANEEQ  189 (264)
Q Consensus       115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~----lrqElqr-~Raa~EyEKk~~~e~  189 (264)
                      .+.+|+.++..++..|....+.|...|....+++..++.++.++-..+.+|..    |-.+|.. +...+=|-...+.+.
T Consensus        53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~R  132 (251)
T PF11932_consen   53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQER  132 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH
Confidence            44466677777777777777888888888888888888888777777777744    4444444 333444444444445


Q ss_pred             HHHHHHH
Q 024699          190 IEQKQAM  196 (264)
Q Consensus       190 ~Eq~qaM  196 (264)
                      ++.++.|
T Consensus       133 l~~L~~~  139 (251)
T PF11932_consen  133 LARLRAM  139 (251)
T ss_pred             HHHHHHh
Confidence            5444443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=94.10  E-value=6  Score=44.48  Aligned_cols=63  Identities=16%  Similarity=0.109  Sum_probs=27.1

Q ss_pred             HHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024699          145 TKDVNRLEAENKQLIAMRA-DIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREI  207 (264)
Q Consensus       145 ~qeL~r~~ad~qqipal~a-Eie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEv  207 (264)
                      .+++.++..++..++.... .++.+.++|+.+|..++-=.+...+......+.++-+.....++
T Consensus       902 ~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~  965 (1353)
T TIGR02680       902 RAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR  965 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444433 45555555555555444444333333333333333333333333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.08  E-value=3.1  Score=37.67  Aligned_cols=95  Identities=21%  Similarity=0.333  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 024699          121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL  200 (264)
Q Consensus       121 ~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknl  200 (264)
                      .+.+..+.++...+++|..++..+.+++..++..++++-   ..++..++|+..+-..++.-++...+..-.+..|-..|
T Consensus        38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~---~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L  114 (251)
T PF11932_consen   38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLE---RQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL  114 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667778888888888888888888888888766554   46677888888888888888899999999999999988


Q ss_pred             HHHHHH------------HHHHHHHHhhhh
Q 024699          201 ISMARE------------IEKLRAELLNTE  218 (264)
Q Consensus       201 ismarE------------vEKLRaElanae  218 (264)
                      -.....            |++|++.+.+++
T Consensus       115 ~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~d  144 (251)
T PF11932_consen  115 EQFVELDLPFLLEERQERLARLRAMLDDAD  144 (251)
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHhhhccC
Confidence            885441            788888877764

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.00  E-value=6  Score=43.66  Aligned_cols=122  Identities=20%  Similarity=0.306  Sum_probs=65.5

Q ss_pred             cccccchHHHHHHHHhhHHHHH--------------HHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHH
Q 024699           58 RHAIDDNTHLQRELTASKDEIH--------------RLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQL  123 (264)
Q Consensus        58 qRLaathvaLrqeLaaaq~Elq--------------rl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~  123 (264)
                      +++.++.-.++.++.-.+++|-              .+-..+.+..+++|-.+-++...+-.....   .+.-+.++...
T Consensus       737 ~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~---~e~~~~~~ek~  813 (1174)
T KOG0933|consen  737 HKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQR---AEESSKELEKR  813 (1174)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            4566677777777776665553              344455566667776666666555444432   22233333333


Q ss_pred             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 024699          124 RAEVQKLNSS-------RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKA  185 (264)
Q Consensus       124 raE~q~L~~~-------RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~  185 (264)
                      .-|.+.|...       .+.+-.+.+.+...+..+.+   +++.+++.|++...+...+-+.+..+|+.
T Consensus       814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~---e~~~l~~kv~~~~~~~~~~~~el~~~k~k  879 (1174)
T KOG0933|consen  814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKS---ELGNLEAKVDKVEKDVKKAQAELKDQKAK  879 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence            3333333333       33333333333333333333   34666777777777777777777766664

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=93.95  E-value=2.9  Score=48.32  Aligned_cols=159  Identities=19%  Similarity=0.242  Sum_probs=104.5

Q ss_pred             hhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHH
Q 024699           50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK  129 (264)
Q Consensus        50 iqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~  129 (264)
                      +.-+-.||.||-.+|..+.+.+..++..|-...+-- ..-+..+.+.-+++.++.-|       -.|+.-=..+|.|...
T Consensus      1169 ~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~-q~~a~s~~e~~~i~~~v~~v-------Nll~EsN~~LRee~~~ 1240 (1822)
T KOG4674|consen 1169 LDTLKRENARLKQQVASLNRTIDDLQRSLTAERASS-QKSAVSDDEHKEILEKVEEV-------NLLRESNKVLREENEA 1240 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhhhhhhhHHHHHHHHH-------HHHHHhHHHHHHHHHH
Confidence            333455555555555444444444443333222110 00122233333444333333       2344555567777778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHH
Q 024699          130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENN-LISMAREIE  208 (264)
Q Consensus       130 L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEkn-lismarEvE  208 (264)
                      +..-.|||..+|..+..++..++.++   ..++++|+....|+-.++.-.+-=|+-+.+++++-+--.+| +=....||.
T Consensus      1241 ~~~k~qEl~~~i~kl~~el~plq~~l---~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~ 1317 (1822)
T KOG4674|consen 1241 NLEKIQELRDKIEKLNFELAPLQNEL---KELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEIS 1317 (1822)
T ss_pred             HHHHHHHHHHHHHHHHhhHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            88888999999999999999999988   45678888888888888888888899999999995555444 456777999


Q ss_pred             HHHHHHhhhhh
Q 024699          209 KLRAELLNTER  219 (264)
Q Consensus       209 KLRaElanae~  219 (264)
                      +|..||.+.++
T Consensus      1318 ~Lk~el~~ke~ 1328 (1822)
T KOG4674|consen 1318 RLKEELEEKEN 1328 (1822)
T ss_pred             HHHHHHHHHHH
Confidence            99999997765

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=93.94  E-value=1.1  Score=46.75  Aligned_cols=114  Identities=14%  Similarity=0.249  Sum_probs=60.2

Q ss_pred             HHHHHHHHhhHHHHHHHhhhhhHhhhhh-----HHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           65 THLQRELTASKDEIHRLGQIIPKLRADK-----EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTT  139 (264)
Q Consensus        65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~-----e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~  139 (264)
                      .=|.++|...+++|...-..+.+.+.+.     +.+...+++++..+++++.......+++.+.-.+   =.-.=+.|..
T Consensus       270 ~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~---~hP~v~~l~~  346 (726)
T PRK09841        270 EFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKK---DHPTYRALLE  346 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCchHHHHHH
Confidence            3355555555555555555555555544     2344555666655555443332222222211000   0001134444


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 024699          140 QIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF  181 (264)
Q Consensus       140 qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey  181 (264)
                      +++.+.++++++++.++++|....|+..|..|..-.|.-|++
T Consensus       347 ~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~  388 (726)
T PRK09841        347 KRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQ  388 (726)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677777777777778887777777777776666655544

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=93.80  E-value=8.1  Score=42.80  Aligned_cols=65  Identities=22%  Similarity=0.344  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699          116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLT-KDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE  180 (264)
Q Consensus       116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~-qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E  180 (264)
                      +..++..+.+++..+...-..+..+-...- +++..+..++.++|.++.+++.++.++.-+=+++.
T Consensus       311 ~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~  376 (1201)
T PF12128_consen  311 LNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQ  376 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444432 25666666777777777777766666655544443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.78  E-value=5.3  Score=38.49  Aligned_cols=157  Identities=18%  Similarity=0.268  Sum_probs=80.3

Q ss_pred             hhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhh-----------hH--H---------HHHHHHHhhhhhHH
Q 024699           51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD-----------KE--A---------HTRELFDRGLKLEV  108 (264)
Q Consensus        51 qrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae-----------~e--~---------q~R~l~ek~~KmEA  108 (264)
                      |.|+..|+-|...--.|.++|.++...|..|.+-+.. +.|           .+  .         .......+...+|+
T Consensus        86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~-kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~  164 (306)
T PF04849_consen   86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSM-KDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEA  164 (306)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHH
Confidence            8999999999988899999999999888888765431 111           00  0         00001112222333


Q ss_pred             hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 024699          109 ELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEE  188 (264)
Q Consensus       109 elra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e  188 (264)
                      ==+-.-.+..|-.++|.|+..|...--.+-.+-|.|..|..      +|+......|..|..||-+-.-.+..-..--..
T Consensus       165 Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv------~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~  238 (306)
T PF04849_consen  165 LQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCV------KQLSEANQQIASLSEELARKTEENRRQQEEITS  238 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHH------HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22233344566777777777777666666666666555443      222222333333333333333322222222333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          189 QIEQKQAMENNLISMAREIEKLRAEL  214 (264)
Q Consensus       189 ~~Eq~qaMEknlismarEvEKLRaEl  214 (264)
                      ++.|+-.+++.+=..+.|-|+|..-|
T Consensus       239 LlsqivdlQ~r~k~~~~EnEeL~q~L  264 (306)
T PF04849_consen  239 LLSQIVDLQQRCKQLAAENEELQQHL  264 (306)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            44444444444444444444444333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.78  E-value=5.7  Score=44.40  Aligned_cols=50  Identities=20%  Similarity=0.244  Sum_probs=27.3

Q ss_pred             HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhc
Q 024699          171 ELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE-------IEKLRAELLNTERR  220 (264)
Q Consensus       171 Elqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarE-------vEKLRaElanae~r  220 (264)
                      |+..+=.++..=|+...+....+..++|++..+..+       ++..++++.-.+..
T Consensus       978 ~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~ 1034 (1293)
T KOG0996|consen  978 EYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELNEIESK 1034 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Confidence            333333444444555566666666666666666663       55555555544433

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=93.77  E-value=2.9  Score=40.08  Aligned_cols=104  Identities=19%  Similarity=0.339  Sum_probs=73.1

Q ss_pred             HHHHHhhhhhHHhhhhchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHH
Q 024699           97 RELFDRGLKLEVELRASEP---VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN----KQLIAMRADIDGIR  169 (264)
Q Consensus        97 R~l~ek~~KmEAelra~e~---lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~----qqipal~aEie~lr  169 (264)
                      +.|++++..|+.+|.....   ...++.-+.+++..|...+.++..+|+.+.++.+..+-++    +.+..++.+.|.|+
T Consensus       134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h  213 (294)
T COG1340         134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH  213 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777777777766642   3344555556666766666666666666666665555443    45678899999999


Q ss_pred             HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 024699          170 SELVEARRAFEFEKKANEEQIEQKQAMENNL  200 (264)
Q Consensus       170 qElqr~Raa~EyEKk~~~e~~Eq~qaMEknl  200 (264)
                      .++...+..++.....+.....-....++-+
T Consensus       214 e~~ve~~~~~~e~~ee~~~~~~elre~~k~i  244 (294)
T COG1340         214 EEFVELSKKIDELHEEFRNLQNELRELEKKI  244 (294)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888777776666655533

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=93.65  E-value=2  Score=34.11  Aligned_cols=69  Identities=23%  Similarity=0.331  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          137 LTTQIKGLTKDVNRLEAEN----KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEK  209 (264)
Q Consensus       137 L~~qvq~l~qeL~r~~ad~----qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEK  209 (264)
                      +..++..+.+.+.|+.++.    |..-++..-.|+|..|+..++.-+.    .+.+..++++-+|+++++-..+.||
T Consensus        22 k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~----Ks~~~i~~L~~~E~~~~~~l~~~Ek   94 (96)
T PF08647_consen   22 KVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS----KSSELIEQLKETEKEFVRKLKNLEK   94 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3333333444444444332    2344555668999999998888764    5678888999999999999888875

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.61  E-value=12  Score=40.05  Aligned_cols=10  Identities=20%  Similarity=0.195  Sum_probs=5.7

Q ss_pred             CCCCCCCCCC
Q 024699           18 RDGPRPVLTR   27 (264)
Q Consensus        18 ~~~p~p~~~r   27 (264)
                      +.++-|.-|+
T Consensus       456 ~~~~CPvCg~  465 (908)
T COG0419         456 AGEKCPVCGQ  465 (908)
T ss_pred             CCCCCCCCCC
Confidence            3456666664

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=93.60  E-value=0.02  Score=59.21  Aligned_cols=160  Identities=21%  Similarity=0.294  Sum_probs=0.0

Q ss_pred             cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhh---HHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHH-
Q 024699           58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK---EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSS-  133 (264)
Q Consensus        58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~---e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~-  133 (264)
                      +-++..+..|+..|...++|+.++.....+++.+-   +.++.+|=.++.-+-++.+....||+|+.-+|..+.++... 
T Consensus       235 ~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE  314 (713)
T PF05622_consen  235 QHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLE  314 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            44445556677777777777777766666555433   34566666666666677777777888877777765553321 


Q ss_pred             -------------------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 024699          134 -------------------RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQ  194 (264)
Q Consensus       134 -------------------RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q  194 (264)
                                         -++|..+...+.+....+..+++...+++..|+.+++++..+-+....+++-...+.....
T Consensus       315 ~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~  394 (713)
T PF05622_consen  315 NEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENK  394 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               1222223333344445667777888888899999999988888888877777666666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Q 024699          195 AMENNLISMAREIEKLRAELLNT  217 (264)
Q Consensus       195 aMEknlismarEvEKLRaElana  217 (264)
                      .++..+.++.+|.+.|..|..+-
T Consensus       395 ~L~ek~~~l~~eke~l~~e~~~L  417 (713)
T PF05622_consen  395 QLEEKLEALEEEKERLQEERDSL  417 (713)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777766544

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.58  E-value=4.6  Score=36.17  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhh
Q 024699          159 IAMRADIDGIRSELVEARRAFE  180 (264)
Q Consensus       159 pal~aEie~lrqElqr~Raa~E  180 (264)
                      -..+..|+.+++.+...|..+.
T Consensus        87 ~~~r~~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   87 EQKRERLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666665555

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=93.58  E-value=9.6  Score=42.21  Aligned_cols=63  Identities=25%  Similarity=0.372  Sum_probs=36.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHhhhhhc
Q 024699          158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ---KQAM-ENNLISMAREIEKLRAELLNTERR  220 (264)
Q Consensus       158 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq---~qaM-EknlismarEvEKLRaElanae~r  220 (264)
                      ...+...|+.+.+++...++.++-+++.....+.+   .+.. +.-+.....+|+.|..+|...+.+
T Consensus       727 ~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~  793 (1201)
T PF12128_consen  727 EAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEER  793 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555566677777777777666666554333332   1111 224555666777777777776554

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.49  E-value=2.3  Score=45.79  Aligned_cols=84  Identities=23%  Similarity=0.341  Sum_probs=45.9

Q ss_pred             cccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTT  139 (264)
Q Consensus        60 LaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~  139 (264)
                      |-+.-.-|.+||.+.+.-+|.|..-+.+++...--+--++-.-.-..|-.+-.++.+++.+.-...-+++|+-.+|+|-.
T Consensus       435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~  514 (1118)
T KOG1029|consen  435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH  514 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            44445566688888888888888888887766554443333322233333333344444444444444444445555544


Q ss_pred             HHHH
Q 024699          140 QIKG  143 (264)
Q Consensus       140 qvq~  143 (264)
                      ++..
T Consensus       515 qlkq  518 (1118)
T KOG1029|consen  515 QLKQ  518 (1118)
T ss_pred             HHHH
Confidence            4433

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=93.36  E-value=2.6  Score=45.70  Aligned_cols=100  Identities=16%  Similarity=0.226  Sum_probs=70.9

Q ss_pred             HHHHHHHHhhhhcccccccccchHHHHHHHHhhHHH--------------HHHHhhhhhHhhhhhHHHHHHHHHhhhhhH
Q 024699           42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDE--------------IHRLGQIIPKLRADKEAHTRELFDRGLKLE  107 (264)
Q Consensus        42 ~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~E--------------lqrl~~~~~~l~ae~e~q~R~l~ek~~KmE  107 (264)
                      ++..|..+|+--|.+-+|=+...--+++||.--..+              +..+.+-+-.+++|.+.||-++--++..+|
T Consensus       327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e  406 (1265)
T KOG0976|consen  327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE  406 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            456666777776777666666555555555432221              122233346788999999999999999999


Q ss_pred             HhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          108 VELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI  141 (264)
Q Consensus       108 Aelra~e~lk~El~q~raE~q~L~~~RQeL~~qv  141 (264)
                      .=-+.+|++|.||+.+.--+..|.+.+-++--|.
T Consensus       407 ~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~  440 (1265)
T KOG0976|consen  407 QGKKDHEAAKNELQEALEKLDLMGTHLSMADYQL  440 (1265)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            9888999999999998887777777766655444

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=93.32  E-value=2.5  Score=38.52  Aligned_cols=127  Identities=31%  Similarity=0.382  Sum_probs=66.3

Q ss_pred             HHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 024699           77 EIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG-------LTKDVN  149 (264)
Q Consensus        77 Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~-------l~qeL~  149 (264)
                      ||--|.+...+.++|--...-              .+..||.-|.-+++.+......-++|...+..       ...+|+
T Consensus        11 EIsLLKqQLke~q~E~~~K~~--------------Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELq   76 (202)
T PF06818_consen   11 EISLLKQQLKESQAEVNQKDS--------------EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQ   76 (202)
T ss_pred             hHHHHHHHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHH
Confidence            556666666666655433332              23456666666666666666666666554444       455555


Q ss_pred             HHHHhh----hhhHHHHHHHHHHHHHHHHHhhhhhhh-h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699          150 RLEAEN----KQLIAMRADIDGIRSELVEARRAFEFE-K-KANEEQIEQKQAMENNLISMAREIEKLRAELLNT  217 (264)
Q Consensus       150 r~~ad~----qqipal~aEie~lrqElqr~Raa~EyE-K-k~~~e~~Eq~qaMEknlismarEvEKLRaElana  217 (264)
                      +..++.    .++..+.+||..|+.++..+.....-- . ...-+.-.+.+.=...+-++-++||.||+||..-
T Consensus        77 r~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~e  150 (202)
T PF06818_consen   77 RKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRE  150 (202)
T ss_pred             HHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHH
Confidence            555544    334445555555555555441000000 0 0111111222222455778999999999999853

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=93.31  E-value=1.3  Score=33.73  Aligned_cols=54  Identities=20%  Similarity=0.319  Sum_probs=31.5

Q ss_pred             hhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699          114 EPVRAEVVQLRA-------EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR  177 (264)
Q Consensus       114 e~lk~El~q~ra-------E~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Ra  177 (264)
                      ..|+..|.++..       +.+.|...|.....+++....+.          ..|++|++.+++|+.+.|+
T Consensus         8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~----------~~Lk~E~e~L~~el~~~r~   68 (69)
T PF14197_consen    8 ATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEEN----------NKLKEENEALRKELEELRA   68 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhc
Confidence            344444544444       44444455555555555444443          4567888999999888774

>PRK09039 hypothetical protein; Validated

Probab=93.30  E-value=8.1  Score=37.17  Aligned_cols=150  Identities=15%  Similarity=0.134  Sum_probs=74.5

Q ss_pred             cchHHHHHHHHhhHHHHHHHhh----------hhhHhhhhhHHHHHHHHHhhhhhHHhhhh----chhHHHHHHHHHHHH
Q 024699           62 DDNTHLQRELTASKDEIHRLGQ----------IIPKLRADKEAHTRELFDRGLKLEVELRA----SEPVRAEVVQLRAEV  127 (264)
Q Consensus        62 athvaLrqeLaaaq~Elqrl~~----------~~~~l~ae~e~q~R~l~ek~~KmEAelra----~e~lk~El~q~raE~  127 (264)
                      .+-..+.++|...+.+|-.|..          .....=++-..+++.+-.....+|+-+.+    ..++..-+.++..++
T Consensus        46 ~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L  125 (343)
T PRK09039         46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQEL  125 (343)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHH
Confidence            3455666777777777766652          22222222223333333444444442221    124444455555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024699          128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREI  207 (264)
Q Consensus       128 q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEv  207 (264)
                      ..+.+.-.+...+|+.|+++++-++.-   +..|.++|+...+...-.+..|+--+..=...+.+   --++|-.+..++
T Consensus       126 ~~~k~~~se~~~~V~~L~~qI~aLr~Q---la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~---~~~~l~~~~~~~  199 (343)
T PRK09039        126 DSEKQVSARALAQVELLNQQIAALRRQ---LAALEAALDASEKRDRESQAKIADLGRRLNVALAQ---RVQELNRYRSEF  199 (343)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHH
Confidence            555555555556666666666655543   45555555555555544444444332221111111   134666788885


Q ss_pred             -HHHHHHHhhh
Q 024699          208 -EKLRAELLNT  217 (264)
Q Consensus       208 -EKLRaElana  217 (264)
                       -.||.-+.+.
T Consensus       200 ~~~l~~~~~~~  210 (343)
T PRK09039        200 FGRLREILGDR  210 (343)
T ss_pred             HHHHHHHhCCC
Confidence             5777555554

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=93.28  E-value=4.1  Score=36.80  Aligned_cols=97  Identities=16%  Similarity=0.197  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhh----hHHHHHHH
Q 024699          118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKA----NEEQIEQK  193 (264)
Q Consensus       118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~----~~e~~Eq~  193 (264)
                      .||.++-.++++|..--|+|....-.+..|+.-+.+-+ .+|.|..+|..|+.|.---|--++.-|.+    ..+-.+|.
T Consensus        79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v  157 (201)
T KOG4603|consen   79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQV  157 (201)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence            68889999999988888888777777777777666655 68888999999999888877777777766    45677888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 024699          194 QAMENNLISMAREIEKLRAELL  215 (264)
Q Consensus       194 qaMEknlismarEvEKLRaEla  215 (264)
                      .-|=...++|-|.....=-||-
T Consensus       158 ~~~y~~~~~~wrk~krmf~ei~  179 (201)
T KOG4603|consen  158 YREYQKYCKEWRKRKRMFREII  179 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888889998888776655543

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.22  E-value=1.8  Score=41.87  Aligned_cols=116  Identities=22%  Similarity=0.303  Sum_probs=72.6

Q ss_pred             cccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH-HHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHH
Q 024699           54 ISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE-AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNS  132 (264)
Q Consensus        54 l~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e-~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~  132 (264)
                      -..|..|..+-..|+|.|..++-|+.-|...+.+.+...+ ...+...   ..=|.-|.-.|.++....|+..|++.+.-
T Consensus        78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~---~ere~lV~qLEk~~~q~~qLe~d~qs~lD  154 (319)
T PF09789_consen   78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP---HEREDLVEQLEKLREQIEQLERDLQSLLD  154 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999998886654 1122111   11112222335666666777777776666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHH
Q 024699          133 SRQELTTQIKGLTKDVNRLEAENKQLIA----MRADIDGIRSEL  172 (264)
Q Consensus       133 ~RQeL~~qvq~l~qeL~r~~ad~qqipa----l~aEie~lrqEl  172 (264)
                      ..+||..+-..+.....|+.-++..+-.    =..+||+|--|-
T Consensus       155 EkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~EN  198 (319)
T PF09789_consen  155 EKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMEN  198 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Confidence            6666666666655555555444432200    012677776664

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.17  E-value=12  Score=42.10  Aligned_cols=163  Identities=16%  Similarity=0.248  Sum_probs=86.8

Q ss_pred             HhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhh----hchhHHHHHHHHH
Q 024699           49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR----ASEPVRAEVVQLR  124 (264)
Q Consensus        49 EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelr----a~e~lk~El~q~r  124 (264)
                      |+......+++....+   .-++...+..+....-.+.+++.+-+...-.+.+.+.++|.+|-    ..--++.|++-++
T Consensus       430 e~e~~pe~~~~~i~~~---~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vae  506 (1293)
T KOG0996|consen  430 ELEKAPEKARIEIQKC---QTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAE  506 (1293)
T ss_pred             HHHhCchhhHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555544443   34455555555555555555555555555556666666666332    2223344444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 024699          125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAE----NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL  200 (264)
Q Consensus       125 aE~q~L~~~RQeL~~qvq~l~qeL~r~~ad----~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknl  200 (264)
                      +|+.=|...-..+..++..+...|..+..+    .--|..++.+|+.+.+|+..+...++--++       -.+.|-+++
T Consensus       507 sel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~-------e~~~~~~~~  579 (1293)
T KOG0996|consen  507 SELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRK-------EERNLKSQL  579 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHH-------HHHHHHHHH
Confidence            555555555555555555566666553333    233556666666666666665554443332       234444555


Q ss_pred             HHHHHHHHHHHHHHhhhhhcc
Q 024699          201 ISMAREIEKLRAELLNTERRA  221 (264)
Q Consensus       201 ismarEvEKLRaElanae~ra  221 (264)
                      -..-.+|+-++.-+.....|.
T Consensus       580 ~~~rqrveE~ks~~~~~~s~~  600 (1293)
T KOG0996|consen  580 NKLRQRVEEAKSSLSSSRSRN  600 (1293)
T ss_pred             HHHHHHHHHHHHHHHhhhhhh
Confidence            556666777777655555444

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=93.15  E-value=15  Score=40.68  Aligned_cols=31  Identities=26%  Similarity=0.299  Sum_probs=12.5

Q ss_pred             HHhhHHHHHHHhhhhhHhh---hhhHHHHHHHHH
Q 024699           71 LTASKDEIHRLGQIIPKLR---ADKEAHTRELFD  101 (264)
Q Consensus        71 Laaaq~Elqrl~~~~~~l~---ae~e~q~R~l~e  101 (264)
                      +.-.++.+......+..++   +|.|.++-++.+
T Consensus       297 ~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~  330 (1074)
T KOG0250|consen  297 VDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKD  330 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            3333444444444444444   444444444333

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=93.06  E-value=15  Score=39.48  Aligned_cols=84  Identities=20%  Similarity=0.362  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH------HHHHHHH
Q 024699          136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS------MAREIEK  209 (264)
Q Consensus       136 eL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlis------marEvEK  209 (264)
                      ++..+|+.|.+++.+--.++=..|.|+.=+|.|+-|+-.+=.+=+-|.|.+++-++|  .+.+.|..      +----|.
T Consensus       646 ~~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~--qik~~~~~a~~~~~lkek~e~  723 (762)
T PLN03229        646 NLQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQ--QIKQKIAEALNSSELKEKFEE  723 (762)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH--HHHHHHHHHhccHhHHHHHHH
Confidence            346678888888888888888888899999999999988877778888888888887  23333322      1222789


Q ss_pred             HHHHHhhhhhcc
Q 024699          210 LRAELLNTERRA  221 (264)
Q Consensus       210 LRaElanae~ra  221 (264)
                      |++||+.+..-+
T Consensus       724 l~~e~~~~~~~~  735 (762)
T PLN03229        724 LEAELAAARETA  735 (762)
T ss_pred             HHHHHHHhhccc
Confidence            999998765433

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=93.04  E-value=5.3  Score=34.34  Aligned_cols=27  Identities=11%  Similarity=0.311  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 024699          138 TTQIKGLTKDVNRLEAENKQLIAMRAD  164 (264)
Q Consensus       138 ~~qvq~l~qeL~r~~ad~qqipal~aE  164 (264)
                      +.+...|+++|++.+.-+..+-....+
T Consensus        79 ~sEk~~L~k~lq~~q~kv~eLE~~~~~  105 (140)
T PF10473_consen   79 RSEKENLDKELQKKQEKVSELESLNSS  105 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            333333444444444444333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.95  E-value=2.7  Score=36.87  Aligned_cols=44  Identities=16%  Similarity=0.293  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          161 MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKL  210 (264)
Q Consensus       161 l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKL  210 (264)
                      |..|+.+|+=++-.+-..+.--++-|.++++..      |-.|++|+++|
T Consensus       149 l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw------m~~k~~eAe~m  192 (194)
T PF08614_consen  149 LQDELQALQLQLNMLEEKLRKLEEENRELVERW------MQRKAQEAERM  192 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHh
Confidence            334555555555555444444455555555542      33366666665

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=92.92  E-value=20  Score=41.21  Aligned_cols=29  Identities=17%  Similarity=0.244  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699          190 IEQKQAMENNLISMAREIEKLRAELLNTE  218 (264)
Q Consensus       190 ~Eq~qaMEknlismarEvEKLRaElanae  218 (264)
                      -++++.++..+-.+-.++.++.+++...+
T Consensus       448 ~aklee~e~qL~elE~kL~~lea~leql~  476 (1486)
T PRK04863        448 QAKEQEATEELLSLEQKLSVAQAAHSQFE  476 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555554443

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=92.76  E-value=0.93  Score=48.08  Aligned_cols=57  Identities=21%  Similarity=0.461  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024699          118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE  174 (264)
Q Consensus       118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr  174 (264)
                      -||-++..||-+|.+.|.-|..++-.||-++.+++...+.+|.|+++++.|+|=+--
T Consensus       866 GElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a  922 (961)
T KOG4673|consen  866 GELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAA  922 (961)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            388899999999999999999999999999999999999999999999999985543

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=92.76  E-value=10  Score=37.14  Aligned_cols=31  Identities=19%  Similarity=0.313  Sum_probs=15.7

Q ss_pred             cccccccchHHHHHHHHhhHHHHHHHhhhhh
Q 024699           56 ENRHAIDDNTHLQRELTASKDEIHRLGQIIP   86 (264)
Q Consensus        56 dNqRLaathvaLrqeLaaaq~Elqrl~~~~~   86 (264)
                      |+..+-+....|+..+..++.++.+|.+-+.
T Consensus        91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~  121 (457)
T TIGR01000        91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQ  121 (457)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555555555544443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=92.69  E-value=7.6  Score=35.25  Aligned_cols=108  Identities=21%  Similarity=0.319  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhh---hhHhh---hhhHHHHHHHHHhhhhhHHhhhhc-
Q 024699           41 EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI---IPKLR---ADKEAHTRELFDRGLKLEVELRAS-  113 (264)
Q Consensus        41 e~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~---~~~l~---ae~e~q~R~l~ek~~KmEAelra~-  113 (264)
                      +.-..-++.|..+--.|.+|+.....|+..+..+||=++.-.+.   +.+++   ...|-+-+.|+..+..+|.|-... 
T Consensus        22 ~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~  101 (193)
T PF14662_consen   22 DENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLV  101 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455666666778888888888888887776555443221   11111   234466777777777777765543 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          114 ---EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV  148 (264)
Q Consensus       114 ---e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL  148 (264)
                         +.|-.|-.++-+|...|...-++|..+...|...|
T Consensus       102 ~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen  102 AEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence               34445555555555555555555544444444444

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=92.62  E-value=13  Score=37.58  Aligned_cols=96  Identities=21%  Similarity=0.268  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-------HHHHHHHHHhhhhhhhhhhhH
Q 024699          115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADID-------GIRSELVEARRAFEFEKKANE  187 (264)
Q Consensus       115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie-------~lrqElqr~Raa~EyEKk~~~  187 (264)
                      ..|+++..+..|+-++...-|.|...+..+..+-.++.+..|.+-+-..+|.       .-..+|..-=+-||-|-+.-+
T Consensus       127 ~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la  206 (499)
T COG4372         127 AARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLA  206 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555555444444444444444333333222       222222222222555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 024699          188 EQIEQKQAMENNLISMAREIEKL  210 (264)
Q Consensus       188 e~~Eq~qaMEknlismarEvEKL  210 (264)
                      -.-++.|+-++-|.+-+.-...+
T Consensus       207 ~r~~a~q~r~~ela~r~aa~Qq~  229 (499)
T COG4372         207 TRANAAQARTEELARRAAAAQQT  229 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555566666655554443333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=92.61  E-value=5.8  Score=33.72  Aligned_cols=127  Identities=23%  Similarity=0.252  Sum_probs=83.8

Q ss_pred             HHHHHHHhhHHHHHHHhhhhhHhh---hhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           66 HLQRELTASKDEIHRLGQIIPKLR---ADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK  142 (264)
Q Consensus        66 aLrqeLaaaq~Elqrl~~~~~~l~---ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq  142 (264)
                      +||-|...+..-...+-+.+..+.   ...|.+|.+|-.|+..+|.+|-..+.==.++...-.+..+..+.-.-|+-+|+
T Consensus         4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq   83 (143)
T PF12718_consen    4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ   83 (143)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence            455555555555555554444443   34567888888888888887765543334444444444444444446888888


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 024699          143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ  192 (264)
Q Consensus       143 ~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq  192 (264)
                      .|-.+|.++...+.....--.+++.-=.++-|-..+++.+....-.-++.
T Consensus        84 ~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee  133 (143)
T PF12718_consen   84 LLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE  133 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            89999988888888877777777777777777777777766655555544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=92.56  E-value=2  Score=38.78  Aligned_cols=29  Identities=7%  Similarity=0.241  Sum_probs=18.3

Q ss_pred             chHHHHHHHHhhHHHHHHHhhhhhHhhhh
Q 024699           63 DNTHLQRELTASKDEIHRLGQIIPKLRAD   91 (264)
Q Consensus        63 thvaLrqeLaaaq~Elqrl~~~~~~l~ae   91 (264)
                      +...++..|...++||..+.+....+..+
T Consensus        87 ~~p~~~~rlp~le~el~~l~~~l~~~~~~  115 (206)
T PRK10884         87 TTPSLRTRVPDLENQVKTLTDKLNNIDNT  115 (206)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            34456667777777777776666665544

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=92.56  E-value=11  Score=38.40  Aligned_cols=125  Identities=26%  Similarity=0.313  Sum_probs=76.7

Q ss_pred             hhhhHHHHHHHHHhhhhhHHhhhhchhHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh-----------
Q 024699           89 RADKEAHTRELFDRGLKLEVELRASEPVRA-EVVQLRAEVQKL-NSSRQELTTQIKGLTKDVNRLEAEN-----------  155 (264)
Q Consensus        89 ~ae~e~q~R~l~ek~~KmEAelra~e~lk~-El~q~raE~q~L-~~~RQeL~~qvq~l~qeL~r~~ad~-----------  155 (264)
                      ..|.|-++-.|+.|+.|+|++-    -+|+ -|.|+|-|+=.| +..-||--+-|..|-+.+.++..|.           
T Consensus       153 eqeqef~vnKlm~ki~Klen~t----~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpv  228 (552)
T KOG2129|consen  153 EQEQEFFVNKLMNKIRKLENKT----LLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPV  228 (552)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhh----HHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            3566677888999999999742    2222 245555554333 3445555555555555555544432           


Q ss_pred             ---------hhh--------HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Q 024699          156 ---------KQL--------IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS-MAREIEKLRAELLNT  217 (264)
Q Consensus       156 ---------qqi--------pal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlis-marEvEKLRaElana  217 (264)
                               -.|        .+++.=|+-|+.|+-|+|+.+--=.|-+.+.+-|..+=|+++-. -.++-+||.-|+...
T Consensus       229 s~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erR  308 (552)
T KOG2129|consen  229 STPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERR  308 (552)
T ss_pred             cCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence                     222        34667788999999999998887777777777777666665532 234455555555443

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=92.50  E-value=7.6  Score=34.76  Aligned_cols=141  Identities=10%  Similarity=0.151  Sum_probs=78.8

Q ss_pred             hhhhcccccccccchHHHHHHHH-hhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhh----hchhHHHHHHHHH
Q 024699           50 MHRIISENRHAIDDNTHLQRELT-ASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR----ASEPVRAEVVQLR  124 (264)
Q Consensus        50 iqrLl~dNqRLaathvaLrqeLa-aaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelr----a~e~lk~El~q~r  124 (264)
                      +..++.....+|..|..|-+.|. ..-..|..+.....       .....+.+.+.|+..+..    .++-.|..-.++-
T Consensus        62 ~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~-------~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c  134 (236)
T cd07651          62 LDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYT-------QKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADC  134 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44577778888888888887776 34455555433332       223333333333333221    2233333333333


Q ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 024699          125 AEVQKLNSSRQELT----TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL  200 (264)
Q Consensus       125 aE~q~L~~~RQeL~----~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknl  200 (264)
                      .++.   ..+....    .+++.+...+.++..++   ...+.+....-+++...+.-  |+.+- .+.+...|.||..=
T Consensus       135 ~~~e---~~~~~~~~~~~ke~eK~~~k~~k~~~~~---~~~~~~Y~~~v~~~~~~~~~--~~~~~-~~~~~~~Q~lEe~R  205 (236)
T cd07651         135 SKIN---SYTLQSQLTWGKELEKNNAKLNKAQSSI---NSSRRDYQNAVKALRELNEI--WNREW-KAALDDFQDLEEER  205 (236)
T ss_pred             HhHH---HHHHHHcccCcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHH
Confidence            3322   2222211    23445555555555554   33567777788888888774  66655 68888899998887


Q ss_pred             HHHHHH
Q 024699          201 ISMARE  206 (264)
Q Consensus       201 ismarE  206 (264)
                      |.+.++
T Consensus       206 i~~lk~  211 (236)
T cd07651         206 IQFLKS  211 (236)
T ss_pred             HHHHHH
Confidence            777776

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=92.32  E-value=8  Score=34.59  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699          195 AMENNLISMAREIEKLRAELLNTER  219 (264)
Q Consensus       195 aMEknlismarEvEKLRaElanae~  219 (264)
                      .+|+.|..|...+|+--|+|...=.
T Consensus       147 lLEkKl~~l~~~lE~keaqL~evl~  171 (201)
T PF13851_consen  147 LLEKKLQALSEQLEKKEAQLNEVLA  171 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888888888888888775543

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=92.25  E-value=21  Score=39.17  Aligned_cols=71  Identities=21%  Similarity=0.309  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024699          136 ELTTQIKGLTKDVN----RLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE  206 (264)
Q Consensus       136 eL~~qvq~l~qeL~----r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarE  206 (264)
                      +|..++..+..+..    +.++..+.+..+++|+..+.-|+..+--.++.---.++..+.|.-..+++=++.+.+
T Consensus       470 ~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~  544 (980)
T KOG0980|consen  470 NLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAE  544 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            34444444444433    355667778889999999888888888887777777777888877777776666555

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=91.97  E-value=8.5  Score=34.17  Aligned_cols=52  Identities=17%  Similarity=0.199  Sum_probs=34.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhh
Q 024699          167 GIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMA----REIEKLRAELLNTE  218 (264)
Q Consensus       167 ~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisma----rEvEKLRaElanae  218 (264)
                      ..+.|-...-.-|.-|.+.-..+-.++.+.-.++.-|-    +++.++|+|++.+-
T Consensus       124 ~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~r~~  179 (182)
T PF15035_consen  124 EWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFARTS  179 (182)
T ss_pred             HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44555555555555666666677777777777777664    34778888887653

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=91.93  E-value=9.6  Score=39.56  Aligned_cols=38  Identities=29%  Similarity=0.474  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699          143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE  180 (264)
Q Consensus       143 ~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E  180 (264)
                      .+.+.+..+++.+.++|....|+..|..|..-.|..|+
T Consensus       356 ~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~  393 (754)
T TIGR01005       356 QLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYE  393 (754)
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555555555555555444444443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=91.90  E-value=1.3  Score=33.25  Aligned_cols=43  Identities=23%  Similarity=0.409  Sum_probs=29.6

Q ss_pred             hhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD  147 (264)
Q Consensus       105 KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qe  147 (264)
                      -||+||||-..+..||.++++....+..--|+--.+...|..+
T Consensus         5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~e   47 (61)
T PF08826_consen    5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQE   47 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999887766555444444444333333

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF13514 AAA_27: AAA domain

Probab=91.82  E-value=23  Score=38.83  Aligned_cols=82  Identities=20%  Similarity=0.241  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 024699          139 TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA----MENNLISMAREIEKLRAEL  214 (264)
Q Consensus       139 ~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa----MEknlismarEvEKLRaEl  214 (264)
                      .-+..+...|..++...+++-.+..+++.+++++..+...++.-.+...+++++..+    .=...+....+..+|+.++
T Consensus       784 ~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~  863 (1111)
T PF13514_consen  784 EALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREEL  863 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            345557777777777777777777777777777777766665554444443332211    0112333444555555555


Q ss_pred             hhhhhc
Q 024699          215 LNTERR  220 (264)
Q Consensus       215 anae~r  220 (264)
                      ...+..
T Consensus       864 ~~~~~~  869 (1111)
T PF13514_consen  864 EDLERQ  869 (1111)
T ss_pred             HHHHHH
Confidence            555443

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=91.78  E-value=4.9  Score=42.11  Aligned_cols=91  Identities=19%  Similarity=0.336  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH---HHHHH
Q 024699          118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQ---IEQKQ  194 (264)
Q Consensus       118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~---~Eq~q  194 (264)
                      -|+.+...++.++...=+.|..++..|..++.          .++.||+.|+.++.++|.-++.+...+-+.   -+-.-
T Consensus       415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~e----------e~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~  484 (652)
T COG2433         415 REITVYEKRIKKLEETVERLEEENSELKRELE----------ELKREIEKLESELERFRREVRDKVRKDREIRARDRRIE  484 (652)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34444444444444444444444444444333          233555555555555555555443332222   23344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh
Q 024699          195 AMENNLISMAREIEKLRAELLNTE  218 (264)
Q Consensus       195 aMEknlismarEvEKLRaElanae  218 (264)
                      .++++|..=.++||.|..+|+...
T Consensus       485 ~L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         485 RLEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677666667777777666554

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=91.68  E-value=4.8  Score=41.77  Aligned_cols=98  Identities=26%  Similarity=0.358  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHhhhhhhhhh--hhHHHH-HH
Q 024699          120 VVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA----MRADIDGIRSELVEARRAFEFEKK--ANEEQI-EQ  192 (264)
Q Consensus       120 l~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipa----l~aEie~lrqElqr~Raa~EyEKk--~~~e~~-Eq  192 (264)
                      ...-..|++.|...-++|..++..+..++....+.++++-.    ...+...+.+++.--..+++..-.  .|++.+ ..
T Consensus       323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~  402 (594)
T PF05667_consen  323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQAL  402 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            33444555555555555666666666666655555544322    223333444444444444443222  233222 23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699          193 KQAMENNLISMAREIEKLRAELLNT  217 (264)
Q Consensus       193 ~qaMEknlismarEvEKLRaElana  217 (264)
                      +++=+.||+.++.+-|+.|+.|..-
T Consensus       403 v~~s~~rl~~L~~qWe~~R~pL~~e  427 (594)
T PF05667_consen  403 VEASEQRLVELAQQWEKHRAPLIEE  427 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            4556899999999999999887543

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=91.64  E-value=7.8  Score=34.68  Aligned_cols=18  Identities=22%  Similarity=0.444  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 024699          134 RQELTTQIKGLTKDVNRL  151 (264)
Q Consensus       134 RQeL~~qvq~l~qeL~r~  151 (264)
                      |.+|+.++..++..+...
T Consensus       120 ReeL~~kL~~~~~~l~~~  137 (194)
T PF15619_consen  120 REELQRKLSQLEQKLQEK  137 (194)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555555555555444433

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=91.60  E-value=7  Score=40.21  Aligned_cols=151  Identities=15%  Similarity=0.258  Sum_probs=87.5

Q ss_pred             cccchHHHHHHHHhhH-HHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhc----hhHHHHHHHHHHHHHHHHHHH
Q 024699           60 AIDDNTHLQRELTASK-DEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS----EPVRAEVVQLRAEVQKLNSSR  134 (264)
Q Consensus        60 LaathvaLrqeLaaaq-~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~----e~lk~El~q~raE~q~L~~~R  134 (264)
                      +-+.-.++.|||.+.= +=+|.+...|.+++++.|- +-+.+.-++||..-+...    -+|+.++....+=+..|..-.
T Consensus       247 ~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~-l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~  325 (622)
T COG5185         247 LEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDN-LYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKS  325 (622)
T ss_pred             CCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3455566778887654 4467788889998877652 222233334444422222    233344444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL  214 (264)
Q Consensus       135 QeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEl  214 (264)
                      |+-.+.+..|..+......   +|-+|++-+|+|+.-+..-+-.+|.-++-|+|-    -.+.+||-.|.-++++|+.++
T Consensus       326 ~~~~g~l~kl~~eie~kEe---ei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Er----e~L~reL~~i~~~~~~L~k~V  398 (622)
T COG5185         326 QEWPGKLEKLKSEIELKEE---EIKALQSNIDELHKQLRKQGISTEQFELMNQER----EKLTRELDKINIQSDKLTKSV  398 (622)
T ss_pred             HhcchHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHH----HHHHHHHHHhcchHHHHHHHH
Confidence            4444444444444444333   355677777777777777766666655555543    346788888888899998886


Q ss_pred             hhhh
Q 024699          215 LNTE  218 (264)
Q Consensus       215 anae  218 (264)
                      -..+
T Consensus       399 ~~~~  402 (622)
T COG5185         399 KSRK  402 (622)
T ss_pred             HhHH
Confidence            6543

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.58  E-value=5.9  Score=41.20  Aligned_cols=119  Identities=17%  Similarity=0.300  Sum_probs=69.0

Q ss_pred             HHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHh-----hhhhHHHHHHHH-----HhhhhhHHhhhhchhH
Q 024699           47 RREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL-----RADKEAHTRELF-----DRGLKLEVELRASEPV  116 (264)
Q Consensus        47 ~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l-----~ae~e~q~R~l~-----ek~~KmEAelra~e~l  116 (264)
                      ..||..+--||++|+..--+|+.+|..+..-+--+..+...+     +-++++..+++.     +++.|||++|.-....
T Consensus       330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~  409 (654)
T KOG4809|consen  330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI  409 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            367999999999999988889888876654444444443333     334555556554     7889999887543222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 024699          117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR  169 (264)
Q Consensus       117 k~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lr  169 (264)
                      -.|   ++++ ..+...++.|-...--..+++.++++++..+=.+-+|+++++
T Consensus       410 ~dd---ar~~-pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneK  458 (654)
T KOG4809|consen  410 EDD---ARMN-PEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEK  458 (654)
T ss_pred             hHh---hhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            111   1111 123334444444444455555555555555555555554443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.56  E-value=20  Score=39.81  Aligned_cols=107  Identities=20%  Similarity=0.274  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhhhhcccccc-------cccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH---HHHHHHHHhhhhhHHhh
Q 024699           41 EEIEIQRREMHRIISENRH-------AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE---AHTRELFDRGLKLEVEL  110 (264)
Q Consensus        41 e~l~~Q~~EiqrLl~dNqR-------LaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e---~q~R~l~ek~~KmEAel  110 (264)
                      ..|..+..+|..|..+=|+       +-..|-.|++++...+.|.+++...+....-+-+   ..+..+-+..--+|+||
T Consensus       692 ~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el  771 (1200)
T KOG0964|consen  692 NEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESEL  771 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3444555555555544333       5577888999999998888888766554443332   45555556665666655


Q ss_pred             h-------------hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          111 R-------------ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD  147 (264)
Q Consensus       111 r-------------a~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qe  147 (264)
                      -             ....+..|+.+++.+...|...|-++.+....++-.
T Consensus       772 ~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~  821 (1200)
T KOG0964|consen  772 GSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEAN  821 (1200)
T ss_pred             hHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3             335566677777777776777777766555554333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=91.55  E-value=20  Score=39.79  Aligned_cols=55  Identities=20%  Similarity=0.483  Sum_probs=27.8

Q ss_pred             hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 024699          114 EPVRAEVVQLRAEV-QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE  171 (264)
Q Consensus       114 e~lk~El~q~raE~-q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqE  171 (264)
                      +.++..+..++.+. +.|...+-+...++..|.+++.+++.   ++..|+.|++.++.+
T Consensus       375 d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~---~~~~L~~e~~~~~~~  430 (1074)
T KOG0250|consen  375 DRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE---QINSLREELNEVKEK  430 (1074)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            34444444444444 55555555555555556665555554   444444444444433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=91.51  E-value=13  Score=38.63  Aligned_cols=13  Identities=23%  Similarity=0.261  Sum_probs=6.6

Q ss_pred             HHHHHHHHhhhhh
Q 024699          207 IEKLRAELLNTER  219 (264)
Q Consensus       207 vEKLRaElanae~  219 (264)
                      ..+|..|+++..+
T Consensus       470 ~~qL~~e~e~~~k  482 (594)
T PF05667_consen  470 YKQLVKELEKLPK  482 (594)
T ss_pred             HHHHHHHHHhCCC
Confidence            4455555555544

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=91.46  E-value=14  Score=41.68  Aligned_cols=106  Identities=17%  Similarity=0.208  Sum_probs=49.2

Q ss_pred             hhhHHHHHHHHHHhhhhcccccccc---cchHHHHHHHHhh---HHHHHH-HhhhhhHhhhhhHHHHHHHHHhhhhhHHh
Q 024699           37 MTLEEEIEIQRREMHRIISENRHAI---DDNTHLQRELTAS---KDEIHR-LGQIIPKLRADKEAHTRELFDRGLKLEVE  109 (264)
Q Consensus        37 ~~LEe~l~~Q~~EiqrLl~dNqRLa---athvaLrqeLaaa---q~Elqr-l~~~~~~l~ae~e~q~R~l~ek~~KmEAe  109 (264)
                      .+||+-+.--..++..|...++.++   ..+--|.+.+.-.   ..|+++ -.+....=..|.+.++.+.-++..+++++
T Consensus       437 ~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~  516 (1317)
T KOG0612|consen  437 QILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEAL  516 (1317)
T ss_pred             hhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4556555555556666666666666   3444444333222   233332 11112222233444555555555555555


Q ss_pred             hhhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          110 LRAS----EPVRAEVVQLRAEVQKLNSSRQELTTQIK  142 (264)
Q Consensus       110 lra~----e~lk~El~q~raE~q~L~~~RQeL~~qvq  142 (264)
                      ++..    +.+++...+++-..+++.+.|++|-....
T Consensus       517 ~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~  553 (1317)
T KOG0612|consen  517 VRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAEL  553 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Confidence            5543    23344444444455555555555554333

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=91.34  E-value=12  Score=37.98  Aligned_cols=177  Identities=18%  Similarity=0.305  Sum_probs=103.4

Q ss_pred             CCchhhHHHHHHHHHHhhhhcccccccc-----cchHHHHHHHHhhHHHHHH--------------Hh----hhhhHhhh
Q 024699           34 FHPMTLEEEIEIQRREMHRIISENRHAI-----DDNTHLQRELTASKDEIHR--------------LG----QIIPKLRA   90 (264)
Q Consensus        34 p~P~~LEe~l~~Q~~EiqrLl~dNqRLa-----athvaLrqeLaaaq~Elqr--------------l~----~~~~~l~a   90 (264)
                      .|-..+||-----.+|+++|--+-.||-     +|..|+.-=-.+-+.|+.|              |.    ....+++-
T Consensus       349 tHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqR  428 (593)
T KOG4807|consen  349 THQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQR  428 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHH
Confidence            4667777744444467888877776653     4444332222222222222              11    11222333


Q ss_pred             hhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 024699           91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA-----------------  153 (264)
Q Consensus        91 e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~a-----------------  153 (264)
                      |-+.-.--.-+|.+..-+=+++.|+-+.-|.|-+-|-|.|++.-|||...+..   |+.+++.                 
T Consensus       429 ELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaa---EItrLRtlltgdGgGtGsplaqgk  505 (593)
T KOG4807|consen  429 ELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAA---EITRLRTLLTGDGGGTGSPLAQGK  505 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH---HHHHHHHHhccCCCCCCCccccCc
Confidence            33322222334555555556677888888999999999999999999876543   3333221                 


Q ss_pred             -----------hhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699          154 -----------ENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN  216 (264)
Q Consensus       154 -----------d~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElan  216 (264)
                                 .-..|--|+.||..|+-|||-+-.+-.|-...|.+.+-.+-...-   .--.+|+.|...|--
T Consensus       506 dayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKa---kadcdIsrLKEqLka  576 (593)
T KOG4807|consen  506 DAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKA---KADCDISRLKEQLKA  576 (593)
T ss_pred             chhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH---hhhccHHHHHHHHHH
Confidence                       112356688899999999998888888887777777654321111   122457777766643

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=91.14  E-value=16  Score=38.18  Aligned_cols=124  Identities=17%  Similarity=0.316  Sum_probs=62.5

Q ss_pred             hhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---
Q 024699           82 GQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL---  158 (264)
Q Consensus        82 ~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi---  158 (264)
                      ...+..|++|+|...--|-.-++.          +++...++..+|..|...+...+.+|+.|-..|.+++...+..   
T Consensus         3 ~e~l~qlq~Erd~ya~~lk~e~a~----------~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~   72 (617)
T PF15070_consen    3 MESLKQLQAERDQYAQQLKEESAQ----------WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP   72 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence            345667777877654444333322          4455556666666666666666666666666666665544321   


Q ss_pred             --H--------HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699          159 --I--------AMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL  215 (264)
Q Consensus       159 --p--------al~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEla  215 (264)
                        |        .|.+|++.|+.|+..+-.-+..--+-|..+..-.+..|.-|..+=+.++.+..+..
T Consensus        73 ~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~  139 (617)
T PF15070_consen   73 EPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQE  139 (617)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1        34555555555555555444332221211111113334444444444555554443

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.06  E-value=9.2  Score=32.79  Aligned_cols=13  Identities=31%  Similarity=0.514  Sum_probs=5.1

Q ss_pred             HHHHHhhhhhHhh
Q 024699           77 EIHRLGQIIPKLR   89 (264)
Q Consensus        77 Elqrl~~~~~~l~   89 (264)
                      |+.-....+..+.
T Consensus        82 e~~~~~~~l~~l~   94 (191)
T PF04156_consen   82 ELSELQQQLQQLQ   94 (191)
T ss_pred             hHHhHHHHHHHHH
Confidence            4444433333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.95  E-value=20  Score=39.12  Aligned_cols=84  Identities=21%  Similarity=0.269  Sum_probs=57.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 024699          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQ  189 (264)
Q Consensus       114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad----~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~  189 (264)
                      .-+++-..|++-|+..|+---|+|+++++...-++...+.+    .+|..-+++||+-|+++|+..-...-+----.+++
T Consensus       433 v~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l  512 (1118)
T KOG1029|consen  433 VYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQEL  512 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            34667778888888899988999999888866666555544    45667777888888888877666555444444444


Q ss_pred             HHHHHHHH
Q 024699          190 IEQKQAME  197 (264)
Q Consensus       190 ~Eq~qaME  197 (264)
                      -+|++.|.
T Consensus       513 ~~qlkq~q  520 (1118)
T KOG1029|consen  513 NHQLKQKQ  520 (1118)
T ss_pred             HHHHHHhh
Confidence            44444443

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=90.90  E-value=2.1  Score=32.08  Aligned_cols=50  Identities=30%  Similarity=0.411  Sum_probs=25.4

Q ss_pred             HHHHHH---HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699          160 AMRADI---DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN  216 (264)
Q Consensus       160 al~aEi---e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElan  216 (264)
                      +|.+||   +.+..||.+++++       |...-.++|..|+..-.+..||+.|+-++..
T Consensus         5 aL~~EirakQ~~~eEL~kvk~~-------n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee   57 (61)
T PF08826_consen    5 ALEAEIRAKQAIQEELTKVKSA-------NLAFESKLQEAEKRNRELEQEIERLKKEMEE   57 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666   5566666666643       2233334444444444555555555554443

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=90.89  E-value=0.068  Score=55.30  Aligned_cols=101  Identities=23%  Similarity=0.322  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHhhhhhhhhhhh
Q 024699          116 VRAEVVQLRAEVQKLNSSRQEL------TTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL---VEARRAFEFEKKAN  186 (264)
Q Consensus       116 lk~El~q~raE~q~L~~~RQeL------~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqEl---qr~Raa~EyEKk~~  186 (264)
                      |+.+...+.+++....+.|.||      +.++..+..++.+.+--++-+..++..++.|+...   ..-...+|.+-+..
T Consensus       279 L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~  358 (713)
T PF05622_consen  279 LRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKA  358 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333444444444444444443      22344455556666666666666666665555422   22233333333332


Q ss_pred             HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699          187 EEQ-------IEQKQAMENNLISMAREIEKLRAELLN  216 (264)
Q Consensus       187 ~e~-------~Eq~qaMEknlismarEvEKLRaElan  216 (264)
                      ...       -.|...++..+..+.+++++|..|+..
T Consensus       359 ~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~  395 (713)
T PF05622_consen  359 RALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQ  395 (713)
T ss_dssp             -------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221       134455555666666666655555443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK11519 tyrosine kinase; Provisional

Probab=90.74  E-value=5.6  Score=41.49  Aligned_cols=108  Identities=14%  Similarity=0.280  Sum_probs=50.9

Q ss_pred             HHHHHHHHhhHHHHHHHhhhhhHhhhhh-----HHHHHHHHHhhhhhHHhhhhchhHHHHHHHH----HHHHHHHHHHHH
Q 024699           65 THLQRELTASKDEIHRLGQIIPKLRADK-----EAHTRELFDRGLKLEVELRASEPVRAEVVQL----RAEVQKLNSSRQ  135 (264)
Q Consensus        65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~-----e~q~R~l~ek~~KmEAelra~e~lk~El~q~----raE~q~L~~~RQ  135 (264)
                      .=|.++|..++++|...-..+.+.+.+.     +.+.+.+++.+..+++++...+...+++.+.    |-.+       +
T Consensus       270 ~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v-------~  342 (719)
T PRK11519        270 AFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAY-------R  342 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH-------H
Confidence            3455555555555555555555555433     2334445555544444333222211111110    0011       2


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699          136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF  179 (264)
Q Consensus       136 eL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~  179 (264)
                      .|..+.+.+.+++..+++....+|....|+..|..|..-.+.-|
T Consensus       343 ~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY  386 (719)
T PRK11519        343 TLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVY  386 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666666666666666666666655555554444433

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=90.72  E-value=21  Score=36.36  Aligned_cols=105  Identities=15%  Similarity=0.216  Sum_probs=68.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--------------------HHHHHHHHHH
Q 024699          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRA--------------------DIDGIRSELV  173 (264)
Q Consensus       114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~a--------------------Eie~lrqElq  173 (264)
                      ..++.++..+...+..+.....++...++.+.++-..++..++.+-....                    -+..+..++.
T Consensus       379 sel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~  458 (569)
T PRK04778        379 SELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIE  458 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH
Confidence            45556666666666666666666666666666665555444433222222                    2256678888


Q ss_pred             HHhhhhhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699          174 EARRAFEFEKKANEEQIE-QKQAMENNLISMAREIEKLRAELLNTER  219 (264)
Q Consensus       174 r~Raa~EyEKk~~~e~~E-q~qaMEknlismarEvEKLRaElanae~  219 (264)
                      ++...++. ...|.+-++ +....+..+-.+..+.+-|......++.
T Consensus       459 ~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~  504 (569)
T PRK04778        459 ALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQ  504 (569)
T ss_pred             HHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888 888888888 7777777777777776666666555553

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=90.70  E-value=0.073  Score=55.11  Aligned_cols=26  Identities=19%  Similarity=0.354  Sum_probs=0.0

Q ss_pred             hHHHHHHHhhhhhHhhhhhHHHHHHH
Q 024699           74 SKDEIHRLGQIIPKLRADKEAHTREL   99 (264)
Q Consensus        74 aq~Elqrl~~~~~~l~ae~e~q~R~l   99 (264)
                      ++.++.........++..-|...+.|
T Consensus       126 le~el~~~~e~~~~~k~~le~~~~~L  151 (722)
T PF05557_consen  126 LEEELEEAEEELEQLKRKLEEEKRRL  151 (722)
T ss_dssp             --------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=90.57  E-value=7.9  Score=37.18  Aligned_cols=43  Identities=19%  Similarity=0.252  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 024699          136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA  178 (264)
Q Consensus       136 eL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa  178 (264)
                      .+..++..+.+.+...+.+...+|....++..|..|+.-.+..
T Consensus       315 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~  357 (444)
T TIGR03017       315 ILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRA  357 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555566666666666666666666666666655555443

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=90.54  E-value=24  Score=41.28  Aligned_cols=150  Identities=17%  Similarity=0.218  Sum_probs=81.3

Q ss_pred             cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 024699           58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL  137 (264)
Q Consensus        58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL  137 (264)
                      +++-....-|..+|+.++.+++-....+..+.-+.+.++....-.+.-+..   -...+..+|.-++.++.+|...-.+|
T Consensus       801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~---~~~~~~~~l~~~~~~~~~le~k~~eL  877 (1822)
T KOG4674|consen  801 DKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELES---ELKSLLTSLDSVSTNIAKLEIKLSEL  877 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455566677777777777777777777777777777666555444443   44566677777777777777666666


Q ss_pred             HHHHHHHHHHHHHHHH------hhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          138 TTQIKGLTKDVNRLEA------ENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLR  211 (264)
Q Consensus       138 ~~qvq~l~qeL~r~~a------d~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLR  211 (264)
                      ..+|+.+.....-..+      ....++.|+.+.+..    -..+--+.+...---+.-+....||+-|.+|..+.++.|
T Consensus       878 ~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~----~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~  953 (1822)
T KOG4674|consen  878 EKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEI----TDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR  953 (1822)
T ss_pred             HHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666654443332222      112222333332222    111222222222223334455566666666666655555


Q ss_pred             HHH
Q 024699          212 AEL  214 (264)
Q Consensus       212 aEl  214 (264)
                      -++
T Consensus       954 ~~~  956 (1822)
T KOG4674|consen  954 LEL  956 (1822)
T ss_pred             Hhh
Confidence            443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=90.49  E-value=28  Score=37.35  Aligned_cols=163  Identities=20%  Similarity=0.250  Sum_probs=85.9

Q ss_pred             cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 024699           58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL  137 (264)
Q Consensus        58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL  137 (264)
                      ..+...+..+...+...+..+++|......+..+...... .......++..+.....+...+....-++..|...-.+|
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l  348 (908)
T COG0419         270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL  348 (908)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666777778888888888887777776655554443 333333333333333333333333333333333333333


Q ss_pred             HHHHHHHHHHHHHHHHhhhhh-HHHHHHH-------HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          138 TTQIKGLTKDVNRLEAENKQL-IAMRADI-------DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEK  209 (264)
Q Consensus       138 ~~qvq~l~qeL~r~~ad~qqi-pal~aEi-------e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEK  209 (264)
                      ..........+......++.. -.+..++       ..+..+++...+....-.....+..++....++++....+++++
T Consensus       349 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~  428 (908)
T COG0419         349 AEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE  428 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222222222222111 2222222       33445555555666666666777777777788888888888888


Q ss_pred             HHHHHhhhhhcc
Q 024699          210 LRAELLNTERRA  221 (264)
Q Consensus       210 LRaElanae~ra  221 (264)
                      ++.++.+.+..-
T Consensus       429 ~~~~~~~~~~~~  440 (908)
T COG0419         429 LEEEIKKLEEQI  440 (908)
T ss_pred             HHHHHHHHHHHH
Confidence            777776665443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=90.48  E-value=21  Score=40.33  Aligned_cols=9  Identities=11%  Similarity=0.434  Sum_probs=4.0

Q ss_pred             HHHHHHHhh
Q 024699           43 IEIQRREMH   51 (264)
Q Consensus        43 l~~Q~~Eiq   51 (264)
                      +..+..|.+
T Consensus       477 lk~~~~el~  485 (1317)
T KOG0612|consen  477 LKSEESELQ  485 (1317)
T ss_pred             HHHHHHHHH
Confidence            334444444

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.45  E-value=19  Score=37.40  Aligned_cols=19  Identities=5%  Similarity=0.433  Sum_probs=10.8

Q ss_pred             hhhhhHHHHHHHHHHHHHH
Q 024699          154 ENKQLIAMRADIDGIRSEL  172 (264)
Q Consensus       154 d~qqipal~aEie~lrqEl  172 (264)
                      +..++-.++++|+.+++.+
T Consensus       314 ~hP~v~~l~~qi~~l~~~i  332 (754)
T TIGR01005       314 NHPRVVAAKSSLADLDAQI  332 (754)
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            3345566666776665543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=90.40  E-value=12  Score=36.60  Aligned_cols=32  Identities=0%  Similarity=0.167  Sum_probs=19.6

Q ss_pred             ccchHHHHHHHHhhHHHHHHHhhhhhHhhhhh
Q 024699           61 IDDNTHLQRELTASKDEIHRLGQIIPKLRADK   92 (264)
Q Consensus        61 aathvaLrqeLaaaq~Elqrl~~~~~~l~ae~   92 (264)
                      ..+-.-|.+++..++++|......+.+.+.+.
T Consensus       160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~  191 (498)
T TIGR03007       160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN  191 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34555566677777777666666666665443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=90.35  E-value=18  Score=34.85  Aligned_cols=31  Identities=10%  Similarity=0.280  Sum_probs=18.5

Q ss_pred             cchHHHHHHHHhhHHHHHHHhhhhhHhhhhh
Q 024699           62 DDNTHLQRELTASKDEIHRLGQIIPKLRADK   92 (264)
Q Consensus        62 athvaLrqeLaaaq~Elqrl~~~~~~l~ae~   92 (264)
                      .+-.-|.++|..++++|......+.+.+.+.
T Consensus       171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~  201 (444)
T TIGR03017       171 KAALWFVQQIAALREDLARAQSKLSAYQQEK  201 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3445566666666666666666666665544

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B

Probab=90.27  E-value=4.6  Score=38.30  Aligned_cols=93  Identities=23%  Similarity=0.294  Sum_probs=65.0

Q ss_pred             hhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 024699           91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS  170 (264)
Q Consensus        91 e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrq  170 (264)
                      .+--++|..+.-+...|.   ++.+.|+--..+..+|++|..- +--+.++..|.+||.++.+++.   ..-++|.++..
T Consensus       121 ~~~d~yR~~LK~IR~~E~---sl~p~R~~r~~l~d~I~kLk~k-~P~s~kl~~LeqELvraEae~l---vaEAqL~n~kR  193 (271)
T PF13805_consen  121 DRLDQYRIHLKSIRNREE---SLQPSRDRRRKLQDEIAKLKYK-DPQSPKLVVLEQELVRAEAENL---VAEAQLSNIKR  193 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---HHhHHHHHhHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHhh---HHHHHHHHhhH
Confidence            344678888888888888   5556777777778888887653 3346678888888888877773   22245777766


Q ss_pred             HHHHHhhhhhhhhhhhHHHHHH
Q 024699          171 ELVEARRAFEFEKKANEEQIEQ  192 (264)
Q Consensus       171 Elqr~Raa~EyEKk~~~e~~Eq  192 (264)
                      +  .++.+|.+.=++-.|.-|.
T Consensus       194 ~--~lKEa~~~~f~Al~E~aEK  213 (271)
T PF13805_consen  194 Q--KLKEAYSLKFDALIERAEK  213 (271)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHHHHHHHHH
Confidence            5  5677777777776666554

>PRK11546 zraP zinc resistance protein; Provisional

Probab=90.03  E-value=0.85  Score=39.40  Aligned_cols=50  Identities=16%  Similarity=0.240  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 024699          129 KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA  178 (264)
Q Consensus       129 ~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa  178 (264)
                      +....|++|.++-..|...++....|-+.|-+|..||..|++.|.-.|..
T Consensus        62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~  111 (143)
T PRK11546         62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVK  111 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666666666666677788889989999999999999888766653

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=89.98  E-value=8.1  Score=36.52  Aligned_cols=67  Identities=18%  Similarity=0.277  Sum_probs=58.1

Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHhhh
Q 024699          112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL----IAMRADIDGIRSELVEARRA  178 (264)
Q Consensus       112 a~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi----pal~aEie~lrqElqr~Raa  178 (264)
                      ++..+..++.+.+..+..|.+.-..|.++++.-+.||.|.+.-++.+    ||-..|-|.+..||+..=..
T Consensus       170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~  240 (267)
T PF10234_consen  170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEI  240 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            34677889999999999999999999999999999999999888777    77889999999999887543

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=89.91  E-value=8.2  Score=37.05  Aligned_cols=108  Identities=22%  Similarity=0.326  Sum_probs=55.4

Q ss_pred             hHHHHHHHhhhhhHhhhhhHH---HHHHHH----HhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           74 SKDEIHRLGQIIPKLRADKEA---HTRELF----DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK  146 (264)
Q Consensus        74 aq~Elqrl~~~~~~l~ae~e~---q~R~l~----ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~q  146 (264)
                      |-+-|+-|-..+.+|+-|+-.   |+-.|-    ..-.|.|-+--...+||.|.+-+.-.+..|...||-|+-+++.-..
T Consensus        16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~   95 (307)
T PF10481_consen   16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES   95 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence            445566666666666655542   222211    1122344444444555555555555555555555555544444333


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024699          147 DVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK  184 (264)
Q Consensus       147 eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk  184 (264)
                      .+.=+   -.|+...+..|+.|.+||.++++.+|--..
T Consensus        96 qv~~l---EgQl~s~Kkqie~Leqelkr~KsELErsQ~  130 (307)
T PF10481_consen   96 QVNFL---EGQLNSCKKQIEKLEQELKRCKSELERSQQ  130 (307)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32222   235566666777777777777776664443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=89.85  E-value=20  Score=34.73  Aligned_cols=50  Identities=16%  Similarity=0.134  Sum_probs=23.5

Q ss_pred             CCCchhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhh
Q 024699           33 HFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLR   89 (264)
Q Consensus        33 pp~P~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~   89 (264)
                      |+.+.-|-.+++.-..+       |.-|-..--.++..-...+.|+..|......++
T Consensus        19 ~~t~~~l~~~~~sL~qe-------n~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~   68 (310)
T PF09755_consen   19 SATREQLRKRIESLQQE-------NRVLKRELETEKARCKHLQEENRALREASVRIQ   68 (310)
T ss_pred             CCchHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555554333       333333333344444555556666655544444

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=89.71  E-value=21  Score=39.47  Aligned_cols=100  Identities=17%  Similarity=0.311  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH----
Q 024699          118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK----  193 (264)
Q Consensus       118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~----  193 (264)
                      .||..++.+...|..+|--+.++.-.|.++|.+++-+.++.-+.+.+.-..=.+++-.=-.+-.+|.---|-.+.+    
T Consensus       255 ~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~ev  334 (1243)
T KOG0971|consen  255 KELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEV  334 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4677777777788888888888888888888888888877776665543333333332222233443322322222    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Q 024699          194 QAMENNLISMAREIEKLRAELLNT  217 (264)
Q Consensus       194 qaMEknlismarEvEKLRaElana  217 (264)
                      -+....+-.|.-++|=|++|.+|-
T Consensus       335 e~lkEr~deletdlEILKaEmeek  358 (1243)
T KOG0971|consen  335 EALKERVDELETDLEILKAEMEEK  358 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            234455677888899999998875

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=89.64  E-value=9.5  Score=31.47  Aligned_cols=45  Identities=27%  Similarity=0.332  Sum_probs=35.0

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024699          176 RRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERR  220 (264)
Q Consensus       176 Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~r  220 (264)
                      -.|+++-++.-..+-++...+++++.....+++.+...+.....+
T Consensus        93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  137 (140)
T PRK03947         93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE  137 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346677777777788888888899888888888888887766544

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=89.63  E-value=26  Score=35.71  Aligned_cols=46  Identities=17%  Similarity=0.273  Sum_probs=32.4

Q ss_pred             hHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhh
Q 024699           39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI   84 (264)
Q Consensus        39 LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~   84 (264)
                      +++++.--..+.+.|..|-----+.|.-|+||-.+..+=.+.|-..
T Consensus       220 i~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq  265 (502)
T KOG0982|consen  220 IERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQ  265 (502)
T ss_pred             HHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHH
Confidence            4556666666777777665555567899999999999866555433

>PRK01156 chromosome segregation protein; Provisional

Probab=89.58  E-value=31  Score=36.55  Aligned_cols=22  Identities=14%  Similarity=0.197  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHH
Q 024699          144 LTKDVNRLEAENKQLIAMRADI  165 (264)
Q Consensus       144 l~qeL~r~~ad~qqipal~aEi  165 (264)
                      +.++|..+..+++.+-....++
T Consensus       310 l~~~l~~l~~~l~~~e~~~~~~  331 (895)
T PRK01156        310 KKQILSNIDAEINKYHAIIKKL  331 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444443333333333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.48  E-value=4.6  Score=35.38  Aligned_cols=55  Identities=16%  Similarity=0.276  Sum_probs=5.9

Q ss_pred             hhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhh
Q 024699           37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD   91 (264)
Q Consensus        37 ~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae   91 (264)
                      .-+++++.....|+..+.-.+-.|+..=+.+-.+|...+.++......|..++++
T Consensus        70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~  124 (194)
T PF08614_consen   70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAE  124 (194)
T ss_dssp             --------------------------------------------HHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHH
Confidence            5678888888888888887777777666666666666666666665555555543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=89.41  E-value=9.4  Score=30.35  Aligned_cols=32  Identities=28%  Similarity=0.333  Sum_probs=18.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699          184 KANEEQIEQKQAMENNLISMAREIEKLRAELL  215 (264)
Q Consensus       184 k~~~e~~Eq~qaMEknlismarEvEKLRaEla  215 (264)
                      +.-...-.++..+++++-.+..++.+|+..+.
T Consensus        94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~  125 (129)
T cd00890          94 KRLETLEKQIEKLEKQLEKLQDQITELQEELQ  125 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445556666666666666666666554

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.24  E-value=32  Score=36.54  Aligned_cols=74  Identities=20%  Similarity=0.348  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699          143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK----ANEEQIEQKQAMENNLISMAREIEKLRAELLNTE  218 (264)
Q Consensus       143 ~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk----~~~e~~Eq~qaMEknlismarEvEKLRaElanae  218 (264)
                      .+.+||.+++..++.   |++=|+.++.-+.+.+..++..++    ...=.--|++.+...|-.++.+|..|--++-+-.
T Consensus       636 ~~~~EL~~~~~~l~~---l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~  712 (717)
T PF10168_consen  636 EFKKELERMKDQLQD---LKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIK  712 (717)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555555544322   344444444444433333332221    1122346888999999999999999998887765


Q ss_pred             h
Q 024699          219 R  219 (264)
Q Consensus       219 ~  219 (264)
                      +
T Consensus       713 ~  713 (717)
T PF10168_consen  713 K  713 (717)
T ss_pred             H
Confidence            4

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK01156 chromosome segregation protein; Provisional

Probab=89.17  E-value=33  Score=36.33  Aligned_cols=40  Identities=18%  Similarity=0.215  Sum_probs=16.9

Q ss_pred             hhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL  144 (264)
Q Consensus       105 KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l  144 (264)
                      .++.++...+..+.++.....++..+.....+|..++..+
T Consensus       623 ~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l  662 (895)
T PRK01156        623 EIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEI  662 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444444444444444444433

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=89.03  E-value=27  Score=35.18  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=16.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhh
Q 024699          158 LIAMRADIDGIRSELVEARRAF  179 (264)
Q Consensus       158 ipal~aEie~lrqElqr~Raa~  179 (264)
                      +|.|+.|.+.++.|++.++..|
T Consensus       276 l~~l~~E~~~~~ee~~~l~~Qi  297 (511)
T PF09787_consen  276 LEELKQERDHLQEEIQLLERQI  297 (511)
T ss_pred             chhhHHHHHHHHHHHHHHHHHH
Confidence            6777777777777777777776

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=88.75  E-value=23  Score=34.06  Aligned_cols=102  Identities=14%  Similarity=0.220  Sum_probs=55.2

Q ss_pred             HHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699          100 FDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF  179 (264)
Q Consensus       100 ~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~  179 (264)
                      +.||..||.   -.+-||.|-+|=.--+..|.++-|--.                 |+++.-+.|+-.|+.|.|.+.-.|
T Consensus        17 LqKIqelE~---QldkLkKE~qQrQfQleSlEAaLqKQK-----------------qK~e~ek~e~s~LkREnq~l~e~c   76 (307)
T PF10481_consen   17 LQKIQELEQ---QLDKLKKERQQRQFQLESLEAALQKQK-----------------QKVEEEKNEYSALKRENQSLMESC   76 (307)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHH-----------------HHHHHHhhhhhhhhhhhhhHHHHH
Confidence            456666666   445566666655555555444433332                 334444556666666666666666


Q ss_pred             hhhhhhhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024699          180 EFEKKANEEQIE--------------QKQAMENNLISMAREIEKLRAELLNTERRA  221 (264)
Q Consensus       180 EyEKk~~~e~~E--------------q~qaMEknlismarEvEKLRaElanae~ra  221 (264)
                      +..-|.+..+..              |+..-.+.+-.+..|+-+++.||+..-.-+
T Consensus        77 ~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~  132 (307)
T PF10481_consen   77 ENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA  132 (307)
T ss_pred             HHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            665555554443              233333444555566666667777665444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=88.69  E-value=14  Score=31.26  Aligned_cols=95  Identities=25%  Similarity=0.381  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh---hh-HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 024699          117 RAEVVQLRAEVQKLNSSRQELTTQIKG---LTKDVNRLEAENK---QL-IAMRADIDGIRSELVEARRAFEFEKKANEEQ  189 (264)
Q Consensus       117 k~El~q~raE~q~L~~~RQeL~~qvq~---l~qeL~r~~ad~q---qi-pal~aEie~lrqElqr~Raa~EyEKk~~~e~  189 (264)
                      -..+++++.|+.+....||.|..|++.   ...||..+..|+.   .| |.|      ++||+--+|+.++    .+.|.
T Consensus        11 ~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvL------vkqel~EAr~nV~----kRlef   80 (120)
T KOG3478|consen   11 ANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVL------VKQELEEARTNVG----KRLEF   80 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchh------hHHHHHHHHhhHH----HHHHH
Confidence            366788888999999999999999987   7788888888763   12 222      5788888888764    22222


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024699          190 -IEQKQAMENNLISMAREIEKLRAELLNTERRA  221 (264)
Q Consensus       190 -~Eq~qaMEknlismarEvEKLRaElanae~ra  221 (264)
                       .-..+-.|+++-.+-+|.+|.|..+.+..+-+
T Consensus        81 I~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~  113 (120)
T KOG3478|consen   81 ISKEIKRLENQIRDSQEEFEKQREAVIKLQQAA  113 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             23467788899999999999999999887654

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=88.43  E-value=5.3  Score=36.76  Aligned_cols=29  Identities=21%  Similarity=0.226  Sum_probs=21.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024699          156 KQLIAMRADIDGIRSELVEARRAFEFEKK  184 (264)
Q Consensus       156 qqipal~aEie~lrqElqr~Raa~EyEKk  184 (264)
                      +|...+..|.|.|-.|.+++|..|+-..|
T Consensus       186 Kq~e~~~~EydrLlee~~~Lq~~i~~~~~  214 (216)
T KOG1962|consen  186 KQSEGLQDEYDRLLEEYSKLQEQIESGGK  214 (216)
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHhccCC
Confidence            45556667888888888888888876544

>PRK12704 phosphodiesterase; Provisional

Probab=88.42  E-value=32  Score=35.15  Aligned_cols=55  Identities=16%  Similarity=0.253  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 024699          137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIE  191 (264)
Q Consensus       137 L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~E  191 (264)
                      |..+.+.|.+....+...-+.|-....+|+...+++......++.-+......+|
T Consensus        91 L~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~  145 (520)
T PRK12704         91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELE  145 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444445555555555555555555554444443333333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.29  E-value=20  Score=33.05  Aligned_cols=14  Identities=36%  Similarity=0.525  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHH
Q 024699          200 LISMAREIEKLRAE  213 (264)
Q Consensus       200 lismarEvEKLRaE  213 (264)
                      +.-+-.+|.++|.|
T Consensus        90 y~~Lk~~in~~R~e  103 (230)
T PF10146_consen   90 YKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344455555555

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.17  E-value=5  Score=33.56  Aligned_cols=86  Identities=15%  Similarity=0.329  Sum_probs=41.2

Q ss_pred             hhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHH
Q 024699           51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKL  130 (264)
Q Consensus        51 qrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L  130 (264)
                      ..|+..-++-....-.|-..+.....|+.+|...+..++.                     -.+.+..|+..+..+...|
T Consensus        41 ~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~---------------------~~~~~ere~~~~~~~~~~l   99 (151)
T PF11559_consen   41 YDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKE---------------------QLEELERELASAEEKERQL   99 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444445555555555555555555544441                     1112334444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699          131 NSSRQELTTQIKGLTKDVNRLEAENKQ  157 (264)
Q Consensus       131 ~~~RQeL~~qvq~l~qeL~r~~ad~qq  157 (264)
                      ...-..+...+.....|++|++..+++
T Consensus       100 ~~~~~~~~~~~k~~kee~~klk~~~~~  126 (151)
T PF11559_consen  100 QKQLKSLEAKLKQEKEELQKLKNQLQQ  126 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555554433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=88.16  E-value=3  Score=30.94  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhh
Q 024699          160 AMRADIDGIRSELVEARRAFE  180 (264)
Q Consensus       160 al~aEie~lrqElqr~Raa~E  180 (264)
                      +|++++...+.|-.|+-.-|+
T Consensus        28 ~lr~~v~~ak~EAaRAN~RlD   48 (56)
T PF04728_consen   28 ALRADVQAAKEEAARANQRLD   48 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            445555666667666654443

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=88.10  E-value=12  Score=35.64  Aligned_cols=74  Identities=19%  Similarity=0.333  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 024699          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANE  187 (264)
Q Consensus       114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~  187 (264)
                      +.|-.-...+-.|..++...-..+.-+...+.++...+++++.+...++.-++.|..|||+-...+..|.+..+
T Consensus        25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~   98 (309)
T PF09728_consen   25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRA   98 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555556666666666666777788889999999999999999999999999999999888877666433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=87.83  E-value=13  Score=36.34  Aligned_cols=52  Identities=21%  Similarity=0.291  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 024699          137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEE  188 (264)
Q Consensus       137 L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e  188 (264)
                      |..+.+.|.++++.+++.+..+|....++..|..|++-.|+.|+--=..+.+
T Consensus       347 l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe  398 (458)
T COG3206         347 LEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQE  398 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777888888888888888888888888888888888777654443333

>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.74  E-value=34  Score=34.81  Aligned_cols=46  Identities=20%  Similarity=0.268  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 024699          166 DGIRSELVEARRAFEFEKKANEEQIEQK-------QAMENNLISMAREIEKLR  211 (264)
Q Consensus       166 e~lrqElqr~Raa~EyEKk~~~e~~Eq~-------qaMEknlismarEvEKLR  211 (264)
                      +.++.||+-++-+++.|.-...++-+|.       ..-+-.+.|+..|.|.|+
T Consensus       437 e~l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~  489 (542)
T KOG0993|consen  437 EDLVKEIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLH  489 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            6788899999999999988877765554       455666777888888876

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=87.56  E-value=49  Score=36.35  Aligned_cols=46  Identities=15%  Similarity=0.218  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhh
Q 024699           40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQII   85 (264)
Q Consensus        40 Ee~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~   85 (264)
                      +..+..-..++..+...-..+......+.+.+...+..+..+...+
T Consensus       529 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (1047)
T PRK10246        529 QSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEE  574 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444432222233332333334444444444443333

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=87.48  E-value=10  Score=35.83  Aligned_cols=25  Identities=28%  Similarity=0.493  Sum_probs=15.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699          155 NKQLIAMRADIDGIRSELVEARRAF  179 (264)
Q Consensus       155 ~qqipal~aEie~lrqElqr~Raa~  179 (264)
                      .-++-.++++|+.+++.|...+..+
T Consensus       241 ~P~v~~l~~~i~~l~~~i~~e~~~i  265 (362)
T TIGR01010       241 NPQVPSLQARIKSLRKQIDEQRNQL  265 (362)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHh
Confidence            5556666777777776666544433

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=87.44  E-value=0.17  Score=52.40  Aligned_cols=115  Identities=19%  Similarity=0.266  Sum_probs=0.0

Q ss_pred             hhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHhhhhhH
Q 024699          104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG------------------------LTKDVNRLEAENKQLI  159 (264)
Q Consensus       104 ~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~------------------------l~qeL~r~~ad~qqip  159 (264)
                      ..|+.-|...+.+.+++..++.+++.|...+..-.+=.+.                        ++.++..+.+++.   
T Consensus       291 ~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~---  367 (722)
T PF05557_consen  291 RSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELR---  367 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---
Confidence            3344444555666666666666666666655554432222                        2223333333332   


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024699          160 AMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRA  221 (264)
Q Consensus       160 al~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~ra  221 (264)
                      .+...++.|..|+..+..-++..+.....+-....-+|+-.+-+.+|++-||+-|.+.++=.
T Consensus       368 ~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~  429 (722)
T PF05557_consen  368 ELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEE  429 (722)
T ss_dssp             --------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            23444555555666666666665555555555667789999999999999999999876543

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=87.35  E-value=37  Score=34.68  Aligned_cols=95  Identities=22%  Similarity=0.375  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhh-----hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 024699          127 VQKLNSSRQELTTQIKGLTKDVNRLEAE-----NKQ-----LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAM  196 (264)
Q Consensus       127 ~q~L~~~RQeL~~qvq~l~qeL~r~~ad-----~qq-----ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaM  196 (264)
                      ++.|...++.|+.+-+.|..++-..++.     +++     +--|+..|+..++.+.   ..+..+.+.+..+.+|.+.|
T Consensus       101 ~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~---~~~~~~~~~~~~L~~qi~~L  177 (475)
T PRK10361        101 IRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQ---DSFGKEAQERHTLAHEIRNL  177 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777777766655433321     111     2334445555554433   33445778889999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccc-CC
Q 024699          197 ENNLISMAREIEKLRAELLNTERRACG-LG  225 (264)
Q Consensus       197 EknlismarEvEKLRaElanae~ra~~-~~  225 (264)
                      -+--..|..|..+|-.=|-. ++..+| ||
T Consensus       178 ~~~n~~i~~ea~nLt~ALkg-d~K~rG~WG  206 (475)
T PRK10361        178 QQLNAQMAQEAINLTRALKG-DNKTQGNWG  206 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHcC-CCCcCcchH
Confidence            77778899998888665532 333333 65

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=87.21  E-value=24  Score=35.73  Aligned_cols=96  Identities=20%  Similarity=0.188  Sum_probs=54.6

Q ss_pred             HHHHHHhhHHHHHHHhhhhhHhhhhhH---HHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           67 LQRELTASKDEIHRLGQIIPKLRADKE---AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG  143 (264)
Q Consensus        67 LrqeLaaaq~Elqrl~~~~~~l~ae~e---~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~  143 (264)
                      +.|.|+.+.++|+.-...-..+.+++.   +..+.+..+..+.|.+|+   -|+.|.-|+..|.=...+.-.-|+.++..
T Consensus        11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~---~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~   87 (459)
T KOG0288|consen   11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELN---RLQEENTQLNEERVREEATEKTLTVDVLI   87 (459)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555444443344443333   345567777777787655   57777777777776666666666666666


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHH
Q 024699          144 LTKDVNRLEAENKQLIAMRADI  165 (264)
Q Consensus       144 l~qeL~r~~ad~qqipal~aEi  165 (264)
                      +..+=.|..-+...+..-++|+
T Consensus        88 ~en~~~r~~~eir~~~~q~~e~  109 (459)
T KOG0288|consen   88 AENLRIRSLNEIRELREQKAEF  109 (459)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhh
Confidence            5555444444444443333443

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=87.20  E-value=36  Score=34.37  Aligned_cols=138  Identities=16%  Similarity=0.261  Sum_probs=71.2

Q ss_pred             HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhh-HHhhhhc--hhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 024699           66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKL-EVELRAS--EPVRAEVV-QLRAEVQKLNSSRQELTTQI  141 (264)
Q Consensus        66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~Km-EAelra~--e~lk~El~-q~raE~q~L~~~RQeL~~qv  141 (264)
                      .+..-+..++.++..|..-+..++++.+..+...+++..+= -..++.-  ..++..+. +-..-...+...+.+|....
T Consensus       248 ~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~  327 (582)
T PF09731_consen  248 DLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREELEEKY  327 (582)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777888888888888888877766555554443321 1111110  01111110 11111223333444444433


Q ss_pred             HH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHhhhhhhhhhhhHHHHHH----HHHHHHHHHHHHH
Q 024699          142 KG-LTKDVNRLEAENKQLIAMRADIDGIRSEL-----VEARRAFEFEKKANEEQIEQ----KQAMENNLISMAR  205 (264)
Q Consensus       142 q~-l~qeL~r~~ad~qqipal~aEie~lrqEl-----qr~Raa~EyEKk~~~e~~Eq----~qaMEknlismar  205 (264)
                      +. |.++|.+.....  .-.|+.++.....|+     +.+...++-|+.++...++.    ++.+|+-+.+...
T Consensus       328 ~~~L~~eL~~~~~~~--~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~  399 (582)
T PF09731_consen  328 EEELRQELKRQEEAH--EEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSE  399 (582)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 555555554444  223555665666666     44588889999887766654    4556665555443

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=87.19  E-value=14  Score=36.10  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcc
Q 024699          199 NLISMAREIEKLRAELLNTERRA  221 (264)
Q Consensus       199 nlismarEvEKLRaElanae~ra  221 (264)
                      .||.+..=|-||+.||..++-|-
T Consensus       329 Plv~IKqAl~kLk~EI~qMdvrI  351 (359)
T PF10498_consen  329 PLVKIKQALTKLKQEIKQMDVRI  351 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhh
Confidence            47778888999999999988775

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=87.17  E-value=37  Score=34.59  Aligned_cols=6  Identities=17%  Similarity=0.667  Sum_probs=3.0

Q ss_pred             hhhhcc
Q 024699          216 NTERRA  221 (264)
Q Consensus       216 nae~ra  221 (264)
                      ++++.|
T Consensus       179 ~a~~~a  184 (514)
T TIGR03319       179 EADKKA  184 (514)
T ss_pred             HHHHHH
Confidence            445554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.14  E-value=13  Score=33.72  Aligned_cols=14  Identities=7%  Similarity=0.442  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHH
Q 024699          161 MRADIDGIRSELVE  174 (264)
Q Consensus       161 l~aEie~lrqElqr  174 (264)
                      |+.|.+.|++|+..
T Consensus       137 L~~~n~~L~~~l~~  150 (206)
T PRK10884        137 LKEENQKLKNQLIV  150 (206)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444444443

>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein

Probab=86.89  E-value=3.5  Score=28.74  Aligned_cols=34  Identities=29%  Similarity=0.556  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 024699          130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA  175 (264)
Q Consensus       130 L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~  175 (264)
                      |-...||+   ++.+.+||++++-+.         ||++++||.+.
T Consensus         5 le~~KqEI---L~EvrkEl~K~K~EI---------IeA~~~eL~r~   38 (40)
T PF08776_consen    5 LERLKQEI---LEEVRKELQKVKEEI---------IEAIRQELSRR   38 (40)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHH---------HHHHHHHHhcc
Confidence            33444444   334566777666655         57778887764

This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=86.80  E-value=22  Score=36.89  Aligned_cols=40  Identities=18%  Similarity=0.328  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699          116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN  155 (264)
Q Consensus       116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~  155 (264)
                      +.+|+..+...+..|...-..|..+...|..+|++++..+
T Consensus       153 leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l  192 (546)
T KOG0977|consen  153 LEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL  192 (546)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444433

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=86.76  E-value=17  Score=30.14  Aligned_cols=67  Identities=22%  Similarity=0.350  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          144 LTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN----EEQIEQKQAMENNLISMAREIEKL  210 (264)
Q Consensus       144 l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~----~e~~Eq~qaMEknlismarEvEKL  210 (264)
                      ...||.+--.+++.|..++.++..++.++..+++..+-=+...    ...-++.+.+++.+..+-.=++-|
T Consensus        47 YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL  117 (132)
T PF07926_consen   47 YERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL  117 (132)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666677777777777666666666665555433332    233445555555554444444443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.55  E-value=23  Score=36.31  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          120 VVQLRAEVQKLNSSRQELTTQIKG  143 (264)
Q Consensus       120 l~q~raE~q~L~~~RQeL~~qvq~  143 (264)
                      |.++..-+..+..-+-+|+.|.+.
T Consensus       295 LaKL~~~l~~~~~~~~~ltqqwed  318 (521)
T KOG1937|consen  295 LAKLMGKLAELNKQMEELTQQWED  318 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444445555555544

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=86.52  E-value=43  Score=34.58  Aligned_cols=30  Identities=23%  Similarity=0.349  Sum_probs=13.6

Q ss_pred             HhhhhhHhhhhhHHHHHHHHHhhhhhHHhh
Q 024699           81 LGQIIPKLRADKEAHTRELFDRGLKLEVEL  110 (264)
Q Consensus        81 l~~~~~~l~ae~e~q~R~l~ek~~KmEAel  110 (264)
                      +...+..+....-.++-.+.++..++|.+|
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~el  407 (650)
T TIGR03185       378 LEVLIQQVKRELQDAKSQLLKELRELEEEL  407 (650)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            333333333333344555555555555544

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=86.46  E-value=48  Score=35.55  Aligned_cols=55  Identities=27%  Similarity=0.387  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHhhh
Q 024699          163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQ----AMENNLISMAREIE---KLRAELLNT  217 (264)
Q Consensus       163 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q----aMEknlismarEvE---KLRaElana  217 (264)
                      .|.|+|++||.|+--.+++-+.---|...-..    -||-=|-++..|=|   .||-||..-
T Consensus       121 vefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~  182 (717)
T PF09730_consen  121 VEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQH  182 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57788888888888777776654444333222    26666777777744   478887753

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=86.41  E-value=45  Score=38.06  Aligned_cols=44  Identities=18%  Similarity=0.266  Sum_probs=29.9

Q ss_pred             HHHHHHHHhhHHHHHHHhhhhhHhhhhhH---HHHHHHHHhhhhhHH
Q 024699           65 THLQRELTASKDEIHRLGQIIPKLRADKE---AHTRELFDRGLKLEV  108 (264)
Q Consensus        65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~e---~q~R~l~ek~~KmEA  108 (264)
                      -+-++.....-+|++-|-..|.++.+...   -+|++|.++.++||-
T Consensus      1460 ~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~l 1506 (1758)
T KOG0994|consen 1460 NASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALEL 1506 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccC
Confidence            34455666667777777777777766554   567777777777764

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=86.12  E-value=13  Score=28.17  Aligned_cols=83  Identities=18%  Similarity=0.293  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699          116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLT--KDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK  193 (264)
Q Consensus       116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~--qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~  193 (264)
                      ...++.++...+..|...+.++...+....  -.+..+..-...+..|...|+.+.+++..++..++.-.+...+..-..
T Consensus        10 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~   89 (123)
T PF02050_consen   10 AQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER   89 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335555555555555555555544443333  111222333334555555555556666665555555555555555555


Q ss_pred             HHHHH
Q 024699          194 QAMEN  198 (264)
Q Consensus       194 qaMEk  198 (264)
                      ++||+
T Consensus        90 k~~e~   94 (123)
T PF02050_consen   90 KKLEK   94 (123)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=85.85  E-value=55  Score=35.22  Aligned_cols=148  Identities=26%  Similarity=0.340  Sum_probs=99.1

Q ss_pred             cccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTT  139 (264)
Q Consensus        60 LaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~  139 (264)
                      |-.+-..||-+|.....|+..-...+-.---..|.-.|.+.--..+.+..+.   .+...+.-++..|..-...-.+|.-
T Consensus       539 Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k---~lenk~~~LrKqvEnk~K~ieeLqq  615 (786)
T PF05483_consen  539 LEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMK---ILENKCNNLRKQVENKNKNIEELQQ  615 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4444455677777777777776655554444555555655555555555333   4445555556666555555556666


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699          140 QIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN  216 (264)
Q Consensus       140 qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElan  216 (264)
                      +-..|.+.   .-++..|+.++---|..|+-|+..+.--|+.+...+..-+|.-.+-|-||.   -||+|++.-..-
T Consensus       616 eNk~LKKk---~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~---~EveK~k~~a~E  686 (786)
T PF05483_consen  616 ENKALKKK---ITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELL---GEVEKAKLTADE  686 (786)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHH
Confidence            66666654   347788888888888888888888888888888888888888888887764   477777765443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=85.82  E-value=5  Score=42.18  Aligned_cols=55  Identities=20%  Similarity=0.306  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699          116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE  180 (264)
Q Consensus       116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E  180 (264)
                      ++.=+.-|+-|+-.|.+-||+|.+++..++..          |.+++.+|..-++||.++...||
T Consensus        84 ~~RI~~sVs~EL~ele~krqel~seI~~~n~k----------iEelk~~i~~~q~eL~~Lk~~ie  138 (907)
T KOG2264|consen   84 QKRILASVSLELTELEVKRQELNSEIEEINTK----------IEELKRLIPQKQLELSALKGEIE  138 (907)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHhHHHHHHHHhHHH
Confidence            33334445556667777788888887776554          44556666666666666655444

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=85.62  E-value=24  Score=38.05  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=16.8

Q ss_pred             chhhHHHHHHHHHHhhhhccccc
Q 024699           36 PMTLEEEIEIQRREMHRIISENR   58 (264)
Q Consensus        36 P~~LEe~l~~Q~~EiqrLl~dNq   58 (264)
                      .+-||+.|+-+.++...+..-|.
T Consensus        93 ndklE~~Lankda~lrq~eekn~  115 (916)
T KOG0249|consen   93 NDKLENELANKDADLRQNEEKNR  115 (916)
T ss_pred             hHHHHHHHhCcchhhchhHHhhh
Confidence            46688888888888776666553

>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=85.55  E-value=7  Score=35.57  Aligned_cols=55  Identities=22%  Similarity=0.254  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699          163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT  217 (264)
Q Consensus       163 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElana  217 (264)
                      +++++++|-+-.++--||.+|.++-+--|---..++.+.+.-.+++-||.||++.
T Consensus        88 ~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~  142 (203)
T KOG3433|consen   88 SQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKI  142 (203)
T ss_pred             HHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444455556677776665544444477777777777788888887765

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=85.54  E-value=13  Score=31.61  Aligned_cols=59  Identities=20%  Similarity=0.404  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699          118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR  177 (264)
Q Consensus       118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Ra  177 (264)
                      .|+.+++.++..|......|.+++..|++.+.-... ..+|..|..|++.|..-|..+|+
T Consensus        79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el-~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   79 AEIKELREELAELKKEVKSLEAELASLSSEPTNEEL-REEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444444444444444333321111 12344445555555555555554

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=85.48  E-value=15  Score=31.37  Aligned_cols=67  Identities=24%  Similarity=0.395  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024699          117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK  184 (264)
Q Consensus       117 k~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk  184 (264)
                      ..|+..+..++..|...-.+|..++..+..+|..+.+.. ....|...|..|.+|+..+.+-++.-+.
T Consensus        71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~-t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP-TNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356777777777777777777777777777777666654 3446777888888887777777665544

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=85.21  E-value=45  Score=33.64  Aligned_cols=45  Identities=20%  Similarity=0.248  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          166 DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAE  213 (264)
Q Consensus       166 e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaE  213 (264)
                      +-+++|-+...+.++-+..+....++.+++=+..   +..+|.+++++
T Consensus       202 ~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~---L~~~Ias~e~~  246 (420)
T COG4942         202 AQLLEERKKTLAQLNSELSADQKKLEELRANESR---LKNEIASAEAA  246 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHH
Confidence            3444444444444444444444444444444433   34445555433

>PF14362 DUF4407: Domain of unknown function (DUF4407)

Probab=85.16  E-value=29  Score=32.02  Aligned_cols=36  Identities=14%  Similarity=0.073  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 024699          163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMEN  198 (264)
Q Consensus       163 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk  198 (264)
                      .+++.+....+...+......+.+...+....+|..
T Consensus       218 ~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~  253 (301)
T PF14362_consen  218 ARKARLDEARQAKVAEFQAIISANDGFLARLEALWE  253 (301)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
Confidence            566666666666666666666777777777777754

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=85.12  E-value=59  Score=34.97  Aligned_cols=108  Identities=19%  Similarity=0.330  Sum_probs=62.1

Q ss_pred             HHHHHHhhhhcccccccccc---hHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHH
Q 024699           44 EIQRREMHRIISENRHAIDD---NTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEV  120 (264)
Q Consensus        44 ~~Q~~EiqrLl~dNqRLaat---hvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El  120 (264)
                      +.+-.|+...|..|+.|...   -..+..+|.++.+||-.+..+...=-.|-+.++-.+...-...=-   .++.||.||
T Consensus       404 e~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~ysk---QVeeLKtEL  480 (786)
T PF05483_consen  404 EVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSK---QVEELKTEL  480 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHH
Confidence            45666777888888877654   345567888888888888766665555666666655554433322   455666666


Q ss_pred             HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699          121 VQLR-------AEVQKLNSSRQELTTQIKGLTKDVNRLEAE  154 (264)
Q Consensus       121 ~q~r-------aE~q~L~~~RQeL~~qvq~l~qeL~r~~ad  154 (264)
                      .+-.       +-+.+|......|.-+...+.-+|.+.+.|
T Consensus       481 E~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qed  521 (786)
T PF05483_consen  481 EQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQED  521 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            6522       222333333444444444444444444443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules

Probab=85.05  E-value=16  Score=29.45  Aligned_cols=71  Identities=14%  Similarity=0.254  Sum_probs=52.0

Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 024699          112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN  186 (264)
Q Consensus       112 a~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~  186 (264)
                      +.-.+..+|..++.+--.|...-++|..+++.++++...-..    -+.++.+|+.++.+++..|.-..--|...
T Consensus        11 ~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~----~~~~~~~l~~~~~~lk~~r~~~~v~k~v~   81 (106)
T PF05837_consen   11 ESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE----DEELSEKLEKLEKELKKSRQRWRVMKNVF   81 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334556777777777777888888888888888877654444    57788899999999988887665555443

Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=84.97  E-value=38  Score=32.68  Aligned_cols=31  Identities=26%  Similarity=0.266  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-hhhhccc
Q 024699          192 QKQAMENNLISMAREIEKLRAELL-NTERRAC  222 (264)
Q Consensus       192 q~qaMEknlismarEvEKLRaEla-nae~ra~  222 (264)
                      +....+.++.....++.+++.++. ++.-||.
T Consensus       228 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP  259 (421)
T TIGR03794       228 ELETVEARIKEARYEIEELENKLNLNTRIVSQ  259 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcC
Confidence            345555667777778888888887 4666664

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=84.77  E-value=18  Score=30.70  Aligned_cols=62  Identities=15%  Similarity=0.341  Sum_probs=42.3

Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699          112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF  179 (264)
Q Consensus       112 a~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~  179 (264)
                      +...+-+-|.||..   .|.+.|.+|+.+++.+...|.....=.+   .++.|+..++..+.+.+..+
T Consensus        44 A~~~v~kql~~vs~---~l~~tKkhLsqRId~vd~klDe~~ei~~---~i~~eV~~v~~dv~~i~~dv  105 (126)
T PF07889_consen   44 AVASVSKQLEQVSE---SLSSTKKHLSQRIDRVDDKLDEQKEISK---QIKDEVTEVREDVSQIGDDV  105 (126)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHhhHHHHHHHH
Confidence            56778888999988   7888999999999999888776554332   23344444444444444443

The region featured in this family is approximately 100 amino acids long.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=84.65  E-value=22  Score=29.66  Aligned_cols=47  Identities=17%  Similarity=0.430  Sum_probs=25.8

Q ss_pred             HhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699          108 VELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE  154 (264)
Q Consensus       108 Aelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad  154 (264)
                      -++...+.+-..+..+.+|+..|...-+-|..++..+..++.-++++
T Consensus        49 r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~   95 (151)
T PF11559_consen   49 RDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEK   95 (151)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555556666665555555555555555555544443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=84.65  E-value=29  Score=31.06  Aligned_cols=88  Identities=17%  Similarity=0.245  Sum_probs=55.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-----HHHHHHHHHHHHhhhhhhhhhhhHH
Q 024699          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRA-----DIDGIRSELVEARRAFEFEKKANEE  188 (264)
Q Consensus       114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~a-----Eie~lrqElqr~Raa~EyEKk~~~e  188 (264)
                      .....|+..++..+.+....-.++..++.....+|.+....++.+-.|..     |.+.|.++|..+...++-..+...+
T Consensus        64 ~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~  143 (194)
T PF15619_consen   64 QRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQE  143 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666666666666666666666666666666666666666655543     5677777777777777766666555


Q ss_pred             HHHHHHHHHHHHH
Q 024699          189 QIEQKQAMENNLI  201 (264)
Q Consensus       189 ~~Eq~qaMEknli  201 (264)
                      +--|.....+|+.
T Consensus       144 Lek~leL~~k~~~  156 (194)
T PF15619_consen  144 LEKQLELENKSFR  156 (194)
T ss_pred             HHHHHHHHhhHHH
Confidence            5555555555543

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=84.57  E-value=50  Score=33.65  Aligned_cols=145  Identities=23%  Similarity=0.338  Sum_probs=80.5

Q ss_pred             HHHHhhHHHHHHHh-----hhhhHhhhhhHHHHHH---HHHhhhhhHHhhhhchhHH----HHHHHHHHHHHHHHHHH--
Q 024699           69 RELTASKDEIHRLG-----QIIPKLRADKEAHTRE---LFDRGLKLEVELRASEPVR----AEVVQLRAEVQKLNSSR--  134 (264)
Q Consensus        69 qeLaaaq~Elqrl~-----~~~~~l~ae~e~q~R~---l~ek~~KmEAelra~e~lk----~El~q~raE~q~L~~~R--  134 (264)
                      .||...++|-.+|.     ++|.+|.+=+-.+--+   -++|+.-+-.+   +++||    .||+.|.-|++.|...=  
T Consensus       363 RELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsd---veaLRrQyleelqsvqRELeVLSEQYSQ  439 (593)
T KOG4807|consen  363 RELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSD---VEALRRQYLEELQSVQRELEVLSEQYSQ  439 (593)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccC---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666666666654     3455555444332222   23344333322   23333    35555555555554311  


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHhhhhhhh-----------hhhhHHHHHHHHHHH
Q 024699          135 -----QELTTQIKGLTKDVNRLEAENKQLIAMRADI-DGIRSELVEARRAFEFE-----------KKANEEQIEQKQAME  197 (264)
Q Consensus       135 -----QeL~~qvq~l~qeL~r~~ad~qqipal~aEi-e~lrqElqr~Raa~EyE-----------Kk~~~e~~Eq~qaME  197 (264)
                           --|...+..-.+-|-+-+-++|.+.+--.|+ ..|-.||.++|+-+--.           |.++ |+-==+.+-|
T Consensus       440 KCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkday-ELEVLLRVKE  518 (593)
T KOG4807|consen  440 KCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAY-ELEVLLRVKE  518 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchh-hHHHHHHhhH
Confidence                 1122333334445566777888888888888 45778888888654322           2221 1112245566


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 024699          198 NNLISMAREIEKLRAELLNT  217 (264)
Q Consensus       198 knlismarEvEKLRaElana  217 (264)
                      ..+--+..||.-|+-||..+
T Consensus       519 sEiQYLKqEissLkDELQta  538 (593)
T KOG4807|consen  519 SEIQYLKQEISSLKDELQTA  538 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66777889999999999887

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=84.56  E-value=65  Score=34.94  Aligned_cols=50  Identities=24%  Similarity=0.322  Sum_probs=32.5

Q ss_pred             chHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhch
Q 024699           63 DNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE  114 (264)
Q Consensus        63 thvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e  114 (264)
                      ..-+||.++-..+.|++-  +...+.-+|++-+|+.|+.-+-||-.+.-+..
T Consensus       424 ERDalr~e~kslk~ela~--~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs  473 (961)
T KOG4673|consen  424 ERDALRREQKSLKKELAA--ALLKDELAEKDEIINQLMAEGEKLSKKQLAQS  473 (961)
T ss_pred             hHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            455677777777777652  33345777888888888887776665443333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=84.50  E-value=44  Score=35.81  Aligned_cols=83  Identities=28%  Similarity=0.388  Sum_probs=55.1

Q ss_pred             HHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------HHHHHHH
Q 024699           97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL-----------IAMRADI  165 (264)
Q Consensus        97 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi-----------pal~aEi  165 (264)
                      -.+..++..||+||+-   +|.++.-+++|..+|...-++|....+.+..+..+++.|++..           ..|..|.
T Consensus        30 ~~~~~~i~~l~~elk~---~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeEN  106 (717)
T PF09730_consen   30 AYLQQRILELENELKQ---LRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEEN  106 (717)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            4567788888887774   6778888888888888888888888777777777666665433           3344444


Q ss_pred             HHHHHHHHHHhh-hhhhh
Q 024699          166 DGIRSELVEARR-AFEFE  182 (264)
Q Consensus       166 e~lrqElqr~Ra-a~EyE  182 (264)
                      =+|+.-+.-+|. .+|||
T Consensus       107 islQKqvs~Lk~sQvefE  124 (717)
T PF09730_consen  107 ISLQKQVSVLKQSQVEFE  124 (717)
T ss_pred             HHHHHHHHHHHHhHHHHH
Confidence            445555555542 34554

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=84.39  E-value=32  Score=31.33  Aligned_cols=147  Identities=20%  Similarity=0.231  Sum_probs=84.6

Q ss_pred             CCchhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhc
Q 024699           34 FHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS  113 (264)
Q Consensus        34 p~P~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~  113 (264)
                      |+|--|+-.++--..+++.+.....       .-+.-+.....++..|...+..++    -++.....++-++..   ..
T Consensus        17 ~~~~~l~~~~e~~~~~L~~~~~~~~-------~~~~~~~~~e~~l~~L~~d~~~L~----~k~~~~~~~~~~l~~---~t   82 (264)
T PF06008_consen   17 PAPYKLLSSIEDLTNQLRSYRSKLN-------PQKQQLDPLEKELESLEQDVENLQ----EKATKVSRKAQQLNN---NT   82 (264)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhccch-------hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---HH
Confidence            5666666666666666665554332       233455555555555555555544    222233344444433   44


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHhhhhhhhhhhhHH
Q 024699          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL-----VEARRAFEFEKKANEE  188 (264)
Q Consensus       114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqEl-----qr~Raa~EyEKk~~~e  188 (264)
                      +.+......+...|+.|...-++|..++..+..  .-.......++.+.+|++.|=+|+     ..-|..-+.|++.-.+
T Consensus        83 ~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~  160 (264)
T PF06008_consen   83 ERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAED  160 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            455555555555555555555555555555444  111225566777778888887777     4567777888888888


Q ss_pred             HHHHHHHH
Q 024699          189 QIEQKQAM  196 (264)
Q Consensus       189 ~~Eq~qaM  196 (264)
                      ++..++.-
T Consensus       161 LL~~v~~~  168 (264)
T PF06008_consen  161 LLSRVQKW  168 (264)
T ss_pred             HHHHHHHH
Confidence            88877764

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3

Probab=84.37  E-value=4.4  Score=29.92  Aligned_cols=55  Identities=24%  Similarity=0.234  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRA  212 (264)
Q Consensus       158 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRa  212 (264)
                      -..+.++|+.+.++|.+.|+-|.---.-+.-.-+=.-.||..|..++..|+.++.
T Consensus         2 ~~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~~~   56 (57)
T PF12592_consen    2 PEEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQQLAEQLEQLKQ   56 (57)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH--
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3567799999999999999999988887777788889999999999999998874

6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=84.36  E-value=30  Score=30.94  Aligned_cols=36  Identities=17%  Similarity=0.391  Sum_probs=15.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN  149 (264)
Q Consensus       114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~  149 (264)
                      ..++.++.+.+..+..|....+.+..+++...+.+.
T Consensus        59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~   94 (302)
T PF10186_consen   59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLE   94 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444433333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR02231 conserved hypothetical protein

Probab=84.23  E-value=12  Score=37.39  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=12.9

Q ss_pred             HHHHHHHhhHHHHHHHhhhhhHhh
Q 024699           66 HLQRELTASKDEIHRLGQIIPKLR   89 (264)
Q Consensus        66 aLrqeLaaaq~Elqrl~~~~~~l~   89 (264)
                      .|+++|..++.++.++...+..++
T Consensus        75 ~l~~~l~~l~~~~~~~~~~~~~~~   98 (525)
T TIGR02231        75 ELRKQIRELEAELRDLEDRGDALK   98 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555444444

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=84.15  E-value=76  Score=35.43  Aligned_cols=111  Identities=20%  Similarity=0.280  Sum_probs=78.6

Q ss_pred             hhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHhh
Q 024699          102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN----KQLIAMRADIDGIRSELVEARR  177 (264)
Q Consensus       102 k~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~----qqipal~aEie~lrqElqr~Ra  177 (264)
                      .-.+..+...+.+-+|.++..+--+++.+...+.+|-.++..+..+....+.++    ..+-.+-..++.+.+++...-.
T Consensus       246 ~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~  325 (1072)
T KOG0979|consen  246 HDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKN  325 (1072)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777788888999999999998888888888887777777666666554    3344455566778888888888


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699          178 AFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTER  219 (264)
Q Consensus       178 a~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~  219 (264)
                      +.|+-|+.--..       .+++..-..++..+++||.+++.
T Consensus       326 ~le~lk~~~~~r-------q~~i~~~~k~i~~~q~el~~~~~  360 (1072)
T KOG0979|consen  326 KLESLKKAAEKR-------QKRIEKAKKMILDAQAELQETED  360 (1072)
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhcCC
Confidence            877776653332       34566666677777777777654

>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12)

Probab=83.91  E-value=41  Score=32.39  Aligned_cols=101  Identities=14%  Similarity=0.241  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHhhhhh-hhhh-------
Q 024699          115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA--ENKQLIAMRADIDGIRSELVEARRAFE-FEKK-------  184 (264)
Q Consensus       115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~a--d~qqipal~aEie~lrqElqr~Raa~E-yEKk-------  184 (264)
                      .+-+..+|+|-++..++..-.++..+++.|+.-=-+...  =...|++.+.+|+.++.++..++..|+ |.+.       
T Consensus        38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~  117 (301)
T PF06120_consen   38 YFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGIT  117 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            456788899999999999999999999887654333222  134678888888888888888888874 4332       


Q ss_pred             --hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699          185 --AN-EEQIEQKQAMENNLISMAREIEKLRAELL  215 (264)
Q Consensus       185 --~~-~e~~Eq~qaMEknlismarEvEKLRaEla  215 (264)
                        ++ ..++.........+....+++.+....+.
T Consensus       118 ~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~  151 (301)
T PF06120_consen  118 ENGYIINHLMSQADATRKLAEATRELAVAQERLE  151 (301)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11 22233444445555555555544444433

>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress)

Probab=83.83  E-value=23  Score=36.91  Aligned_cols=116  Identities=18%  Similarity=0.248  Sum_probs=72.9

Q ss_pred             HHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 024699           97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR  176 (264)
Q Consensus        97 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~R  176 (264)
                      +...+|+--||.|+.   .++.+.+-++.-|..|...|.||+-+|-.|+.-.+-++-   -+-.-+-|+-   .=+-++=
T Consensus       593 kG~Aeki~~me~Ei~---glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakK---AVhdaK~ElA---~~Y~klL  663 (790)
T PF07794_consen  593 KGYAEKIGFMEMEIG---GLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKK---AVHDAKVELA---AAYSKLL  663 (790)
T ss_pred             hhhHhhhhhhhhhhc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHH---HHHHHHH
Confidence            567788889998665   678889999999999999999999999987754332222   1111122221   1122222


Q ss_pred             hhhhh---hhhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024699          177 RAFEF---EKKANEEQIEQ----------KQAMENNLISMAREIEKLRAELLNTERRA  221 (264)
Q Consensus       177 aa~Ey---EKk~~~e~~Eq----------~qaMEknlismarEvEKLRaElanae~ra  221 (264)
                      +.|+.   -||-+.-+..|          ..-|-||-|..+-|-..|.|||-.++.+-
T Consensus       664 agiKEKwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~ea~c  721 (790)
T PF07794_consen  664 AGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLEARC  721 (790)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHHhhh
Confidence            22221   13333333333          33466777888888888999998887653

These sequences are highly similar and the region concerned is about 100 residues long.

>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals

Probab=83.67  E-value=22  Score=34.35  Aligned_cols=93  Identities=22%  Similarity=0.302  Sum_probs=55.4

Q ss_pred             HhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           72 TASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS-----EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK  146 (264)
Q Consensus        72 aaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~-----e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~q  146 (264)
                      ...=.||||..+.+..-+.--+-+|-.-+.++-.-=++|+..     ++|-+|+..|.+|+-.|..+||.=...+..||.
T Consensus       156 EKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd  235 (302)
T PF07139_consen  156 EKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTD  235 (302)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444433333333333333333333333332     478899999999999999999998888888887


Q ss_pred             HHHHHHHhhhhhHHHHHHHH
Q 024699          147 DVNRLEAENKQLIAMRADID  166 (264)
Q Consensus       147 eL~r~~ad~qqipal~aEie  166 (264)
                      --.++.  =.||..|||||-
T Consensus       236 ~A~~Ms--E~Ql~ELRadIK  253 (302)
T PF07139_consen  236 RASQMS--EEQLAELRADIK  253 (302)
T ss_pred             HHhhcC--HHHHHHHHHHHH
Confidence            644332  235666666653

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.41  E-value=7.6  Score=38.19  Aligned_cols=83  Identities=20%  Similarity=0.220  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 024699          124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ-LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS  202 (264)
Q Consensus       124 raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qq-ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlis  202 (264)
                      ++...+|-..++|-+...+.+...|.|-.-++.. .-.|+++++.|.|+++.+-..||--|+.-.|++|-....+-+=|.
T Consensus       213 sa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D  292 (365)
T KOG2391|consen  213 SAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDID  292 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCch
Confidence            3444455555555555555555566555555433 345677788888888888888888888888877766655555555


Q ss_pred             HHHH
Q 024699          203 MARE  206 (264)
Q Consensus       203 marE  206 (264)
                      ++.+
T Consensus       293 ~~~~  296 (365)
T KOG2391|consen  293 EAIE  296 (365)
T ss_pred             hhhh
Confidence            5554

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=83.08  E-value=22  Score=37.49  Aligned_cols=63  Identities=19%  Similarity=0.261  Sum_probs=31.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHH-Hhhhhhc
Q 024699          157 QLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLI-SMAREIEKLRAE-LLNTERR  220 (264)
Q Consensus       157 qipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknli-smarEvEKLRaE-lanae~r  220 (264)
                      .+-++..+|+.|+.+|+.-...+|.-++ ....+.+++.||-.=- .=...|+||+-+ |+.++..
T Consensus       475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~-~l~~l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~  539 (652)
T COG2433         475 EIRARDRRIERLEKELEEKKKRVEELER-KLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEE  539 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCCCcceehhhhhhHHHHHhHHHh
Confidence            3445555566666666655555554433 2344555555553211 011457777644 5555433

>PF04626 DEC-1_C: Dec-1 protein, C terminal region; InterPro: IPR006720 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly

Probab=82.87  E-value=0.7  Score=39.20  Aligned_cols=23  Identities=22%  Similarity=0.289  Sum_probs=18.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC
Q 024699          226 GSAYGLLNGCPDMRYPGGAFDNGYG  250 (264)
Q Consensus       226 g~~Yg~~yg~p~~~~~~~~Y~~~Yg  250 (264)
                      ...||.+||  .+||.+|+|+.+|+
T Consensus        74 ~~sYgtsYg--~ggyGsnaYG~~~~   96 (132)
T PF04626_consen   74 VQSYGTSYG--GGGYGSNAYGVQRS   96 (132)
T ss_pred             ecccceeec--CCcccccccCCCcC
Confidence            367888887  57888899998776

Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Alternative splicing generates different carboxy terminal ends in different protein isoforms. This domain is the most C-terminal region that is present in the main isoforms.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=82.52  E-value=13  Score=29.25  Aligned_cols=37  Identities=27%  Similarity=0.395  Sum_probs=18.4

Q ss_pred             hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK  146 (264)
Q Consensus       110 lra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~q  146 (264)
                      +-..-.+-.+..++..+++.|.+.|..++.+|..+..
T Consensus        28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~   64 (108)
T PF02403_consen   28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKK   64 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence            3333334444455555555555555555555554443

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=82.46  E-value=52  Score=32.24  Aligned_cols=55  Identities=13%  Similarity=0.224  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699          163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT  217 (264)
Q Consensus       163 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElana  217 (264)
                      ..++.+.+|+..++..+.--+..+.+..+-+..+.+-|-.+.-|+|+...++...
T Consensus       266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer  320 (359)
T PF10498_consen  266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER  320 (359)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4667778888888888888888888888888888888889999999999887654

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=81.97  E-value=64  Score=32.98  Aligned_cols=45  Identities=16%  Similarity=0.134  Sum_probs=20.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 024699          158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS  202 (264)
Q Consensus       158 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlis  202 (264)
                      |-..+..|+.+..+-.+.|+++..+=+.=.+.-.++..=-.||..
T Consensus       149 l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~  193 (475)
T PRK10361        149 LDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTR  193 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555555554444433444444443444443

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=81.94  E-value=11  Score=28.59  Aligned_cols=47  Identities=15%  Similarity=0.103  Sum_probs=34.3

Q ss_pred             cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhh
Q 024699           58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGL  104 (264)
Q Consensus        58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~  104 (264)
                      ++|-++..+|+-.|..+...+...-..+..|..|+|.-++.|-+...
T Consensus         1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~   47 (69)
T PF14197_consen    1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYE   47 (69)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667778888888888888888888888888888865555544433

>PRK00106 hypothetical protein; Provisional

Probab=81.82  E-value=68  Score=33.18  Aligned_cols=55  Identities=16%  Similarity=0.244  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 024699          137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIE  191 (264)
Q Consensus       137 L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~E  191 (264)
                      |..+-+.|.+....+...-+.+-....+|+...+++......++--.......+|
T Consensus       106 L~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le  160 (535)
T PRK00106        106 LTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELE  160 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444445555555555566666666555555444433333333

>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins

Probab=81.80  E-value=7.5  Score=30.00  Aligned_cols=42  Identities=21%  Similarity=0.497  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 024699          123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD  164 (264)
Q Consensus       123 ~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aE  164 (264)
                      +..++..|.....||..++..+.+++.+.+.+.+++..+++.
T Consensus         1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~   42 (69)
T PF08912_consen    1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQ   42 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356888999999999999999999999988888666666554

This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=81.68  E-value=16  Score=27.84  Aligned_cols=56  Identities=36%  Similarity=0.523  Sum_probs=31.9

Q ss_pred             HhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           87 KLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE  152 (264)
Q Consensus        87 ~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~  152 (264)
                      +.=+|+|.+|-.|++-+-+|..         .|+ +...-|.+|-+.-.++..++..+...+..+.
T Consensus         5 ~~l~EKDe~Ia~L~eEGekLSk---------~el-~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e   60 (74)
T PF12329_consen    5 KKLAEKDEQIAQLMEEGEKLSK---------KEL-KLNNTIKKLRAKIKELEKQIKELKKKLEELE   60 (74)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHH---------HHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446889999998888877765         222 2233344544444445555555544444333

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=81.62  E-value=27  Score=33.27  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=0.0

Q ss_pred             HHHHHhhHHHHHHHhhhhhHhh
Q 024699           68 QRELTASKDEIHRLGQIIPKLR   89 (264)
Q Consensus        68 rqeLaaaq~Elqrl~~~~~~l~   89 (264)
                      +.++..+..|..........++
T Consensus        15 ~~~~~~~~~E~~~Y~~fL~~l~   36 (314)
T PF04111_consen   15 DKQLEQAEKERDTYQEFLKKLE   36 (314)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=81.54  E-value=98  Score=34.84  Aligned_cols=155  Identities=17%  Similarity=0.206  Sum_probs=99.4

Q ss_pred             cccchHHHHHHHHhhHHHHHHHhhhhhHhhhhh-------H--------------HHHHHHHHhhhhhHHhhhhchhHHH
Q 024699           60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADK-------E--------------AHTRELFDRGLKLEVELRASEPVRA  118 (264)
Q Consensus        60 LaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~-------e--------------~q~R~l~ek~~KmEAelra~e~lk~  118 (264)
                      |.+..--|+.+++.|..+.+..-.-...|.+|+       +              .|.--.+=+.-+.|+   ..+-+..
T Consensus       158 lK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~---~i~k~~~  234 (1141)
T KOG0018|consen  158 LKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEA---CIEKAND  234 (1141)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHhhhhH
Confidence            556677788888888888888877777777776       1              111122223444555   4456667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----------------HHHHHHhhhhhh
Q 024699          119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR-----------------SELVEARRAFEF  181 (264)
Q Consensus       119 El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lr-----------------qElqr~Raa~Ey  181 (264)
                      ||....+|+.+|...+..-..++....++..+..-+++++.....+.+.+-                 ..|......++-
T Consensus       235 els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~  314 (1141)
T KOG0018|consen  235 ELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIET  314 (1141)
T ss_pred             HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHH
Confidence            888888888888887777777777766666666666666655554444333                 333444445555


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699          182 EKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT  217 (264)
Q Consensus       182 EKk~~~e~~Eq~qaMEknlismarEvEKLRaElana  217 (264)
                      =++.+..+-+.++.++|.++++..=-+-+-.|+.+.
T Consensus       315 ~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~  350 (1141)
T KOG0018|consen  315 AKKDYRALKETIERLEKELKAVEGAKEEFEKEIEER  350 (1141)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777788888888888877655444444444443

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=81.39  E-value=18  Score=28.30  Aligned_cols=60  Identities=30%  Similarity=0.417  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhh-hhhhhhhHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHhhhh
Q 024699          158 LIAMRADIDGIRSELVEARRAF-EFEKKANEEQIEQKQ-------AMENNLISMA----REIEKLRAELLNTE  218 (264)
Q Consensus       158 ipal~aEie~lrqElqr~Raa~-EyEKk~~~e~~Eq~q-------aMEknlisma----rEvEKLRaElanae  218 (264)
                      +.++++|.|.+-+|+.-.+..- +||.|. ..++--++       .||.+-..|.    .||-+||.+|.+..
T Consensus         6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki-~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~   77 (79)
T PF08581_consen    6 LDAIRQEFENLSQEANSYKHQKDEYEHKI-NSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRG   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4556666666666666655433 344442 22222222       3344444444    35889999998764

; PDB: 3VP9_B 3VP8_B.

>TIGR02231 conserved hypothetical protein

Probab=81.33  E-value=20  Score=35.79  Aligned_cols=32  Identities=16%  Similarity=0.311  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699          187 EEQIEQKQAMENNLISMAREIEKLRAELLNTE  218 (264)
Q Consensus       187 ~e~~Eq~qaMEknlismarEvEKLRaElanae  218 (264)
                      .+...+....+.-+-.+.+++++|+.+|.+..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~  172 (525)
T TIGR02231       141 ERLLTEDREAERRIRELEKQLSELQNELNALL  172 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33334445555555666777777777776553

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>TIGR02473 flagell_FliJ flagellar export protein FliJ

Probab=81.29  E-value=26  Score=28.11  Aligned_cols=43  Identities=16%  Similarity=0.195  Sum_probs=29.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 024699          156 KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMEN  198 (264)
Q Consensus       156 qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk  198 (264)
                      .-+..|...|+...+.+..++..++.-++.-.+-.-..++|||
T Consensus        68 ~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lek  110 (141)
T TIGR02473        68 RFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEK  110 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666777777777777777777776666666666666654

Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=81.27  E-value=19  Score=36.73  Aligned_cols=46  Identities=20%  Similarity=0.223  Sum_probs=30.2

Q ss_pred             HHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH
Q 024699           48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE   93 (264)
Q Consensus        48 ~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e   93 (264)
                      .|+..|..|=.-..+|--.|--++.....+++.|...+.++++|.+
T Consensus        45 ee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~   90 (472)
T TIGR03752        45 EELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENE   90 (472)
T ss_pred             chhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666666666666677777777777776665

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=81.20  E-value=7.8  Score=34.35  Aligned_cols=75  Identities=20%  Similarity=0.359  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699          115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK  193 (264)
Q Consensus       115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~  193 (264)
                      .++..+..+..++.++.....+|..+++.....    +.+-..=..+.++++.|+.++..+.+.++--++...+.++++
T Consensus        66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~----r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~  140 (188)
T PF03962_consen   66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG----REESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKL  140 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            344444444554444444444444444443221    122334455677778888888888877775556666666553

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=81.19  E-value=21  Score=26.94  Aligned_cols=28  Identities=14%  Similarity=0.426  Sum_probs=18.1

Q ss_pred             HHHHHHhhHHHHHHHhhhhhHhhhhhHH
Q 024699           67 LQRELTASKDEIHRLGQIIPKLRADKEA   94 (264)
Q Consensus        67 LrqeLaaaq~Elqrl~~~~~~l~ae~e~   94 (264)
                      .+++|+.+.+++......+..+....+.
T Consensus         3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~   30 (123)
T PF02050_consen    3 AEQELAEAQQELQEAEEQLEQLQQERQE   30 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777666666655443

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=81.02  E-value=78  Score=34.24  Aligned_cols=149  Identities=19%  Similarity=0.262  Sum_probs=87.5

Q ss_pred             hhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhH
Q 024699           37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPV  116 (264)
Q Consensus        37 ~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~l  116 (264)
                      .=||++++.-..||-.=-  |-.=-..|.+|.+-|.-.++|+..=.....                         ....|
T Consensus       432 ~~Le~elekLk~eilKAk--~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~-------------------------~~~gL  484 (762)
T PLN03229        432 RELEGEVEKLKEQILKAK--ESSSKPSELALNEMIEKLKKEIDLEYTEAV-------------------------IAMGL  484 (762)
T ss_pred             ccHHHHHHHHHHHHHhcc--cccCCCCChHHHHHHHHHHHHHHHHHHHhh-------------------------hhhhH
Confidence            346777766666664431  222245566666666666665533221111                         11234


Q ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 024699          117 RAEVVQLRAEVQKLNS----SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ  192 (264)
Q Consensus       117 k~El~q~raE~q~L~~----~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq  192 (264)
                      +.-|.-++-|+-+-.+    .--.|+.++..|.+|+.+--++.-.-|.|+.-+|.|+.+. ++.+.-+  .+.++.-+  
T Consensus       485 k~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~-~~~~~s~--g~~~a~~L--  559 (762)
T PLN03229        485 QERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS-RAKALSE--KKSKAEKL--  559 (762)
T ss_pred             HHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH-Hhhhhcc--cchhhhhh--
Confidence            4555555554444211    0113777899999999988888888899999999998887 4443322  22122222  


Q ss_pred             HHHHHHHHHH------HHHHHHHHHHHHhhh
Q 024699          193 KQAMENNLIS------MAREIEKLRAELLNT  217 (264)
Q Consensus       193 ~qaMEknlis------marEvEKLRaElana  217 (264)
                      -+..-|.++.      |..+||.|.||+.+.
T Consensus       560 k~ei~kki~e~~~~~~~kek~ea~~aev~~~  590 (762)
T PLN03229        560 KAEINKKFKEVMDRPEIKEKMEALKAEVASS  590 (762)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence            3456677777      777788888877763

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=80.99  E-value=33  Score=32.44  Aligned_cols=93  Identities=15%  Similarity=0.204  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 024699          116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA  195 (264)
Q Consensus       116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa  195 (264)
                      ++.++.++.+++..+.+..+...++++....++.|.+.=.++--..+.|++..+.++.-..+.+              ..
T Consensus        97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~--------------~~  162 (370)
T PRK11578         97 AENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQAQI--------------GT  162 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH--------------HH
Confidence            3344444444444444444455555555555555554433333334455555544443333322              23


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccc
Q 024699          196 MENNLISMAREIEKLRAELLNTERRAC  222 (264)
Q Consensus       196 MEknlismarEvEKLRaElanae~ra~  222 (264)
                      ++..+-.....++.++..+.+..-+|+
T Consensus       163 ~~~~l~~~~~~l~~~~~~l~~~~I~AP  189 (370)
T PRK11578        163 IDAQIKRNQASLDTAKTNLDYTRIVAP  189 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCEEECC
Confidence            333444445556666666766666664

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=80.93  E-value=41  Score=30.10  Aligned_cols=92  Identities=28%  Similarity=0.339  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 024699          119 EVVQLRAEVQKLNSSRQE---LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA  195 (264)
Q Consensus       119 El~q~raE~q~L~~~RQe---L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa  195 (264)
                      ++..+++=+.+|.+.+.+   +......+.+.+....++.+++-.-.++|+.-=-||++..+.+.          +...+
T Consensus        87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~----------~~ke~  156 (190)
T PF05266_consen   87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLK----------EKKEA  156 (190)
T ss_pred             ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence            344455556666666663   33444446666666666666666666666665556665554444          34455


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhc
Q 024699          196 MENNLISMAREIEKLRAELLNTERR  220 (264)
Q Consensus       196 MEknlismarEvEKLRaElanae~r  220 (264)
                      +.+.+..|..++++|-.++.|++-+
T Consensus       157 ~~~ei~~lks~~~~l~~~~~~~e~~  181 (190)
T PF05266_consen  157 KDKEISRLKSEAEALKEEIENAELE  181 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888888888888888654

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=80.87  E-value=23  Score=27.13  Aligned_cols=41  Identities=24%  Similarity=0.320  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 024699          135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA  175 (264)
Q Consensus       135 QeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~  175 (264)
                      |++..+++.++.++..+.+..+++-.-..+++....||..+
T Consensus         1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l   41 (106)
T PF01920_consen    1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKL   41 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34444444455554444444444444444444455555443

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=80.81  E-value=46  Score=30.60  Aligned_cols=30  Identities=17%  Similarity=0.037  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 024699          193 KQAMENNLISMAREIEKLRAELLNTERRAC  222 (264)
Q Consensus       193 ~qaMEknlismarEvEKLRaElanae~ra~  222 (264)
                      ....+.++-+.-..++.....+.++.-+++
T Consensus       181 ~~~~~~~~~~~~~~l~~a~~~l~~~~i~AP  210 (327)
T TIGR02971       181 VDLAQAEVKSALEAVQQAEALLELTYVKAP  210 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCEEECC
Confidence            344555666666677777777777777765

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=80.79  E-value=43  Score=30.24  Aligned_cols=156  Identities=21%  Similarity=0.253  Sum_probs=75.9

Q ss_pred             HHHHHHHhhHHHHHHHhhhhhH---hhhhhHHHHHHHHHhhhhhHHhhhhch----hHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           66 HLQRELTASKDEIHRLGQIIPK---LRADKEAHTRELFDRGLKLEVELRASE----PVRAEVVQLRAEVQKLNSSRQELT  138 (264)
Q Consensus        66 aLrqeLaaaq~Elqrl~~~~~~---l~ae~e~q~R~l~ek~~KmEAelra~e----~lk~El~q~raE~q~L~~~RQeL~  138 (264)
                      .|+.+|-.+++.+..+...+..   -...-|.++..|-.|+.-||.+|...+    .+..-|..+...+......++.|-
T Consensus         5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE   84 (237)
T PF00261_consen    5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLE   84 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666666666666655544332   233445666677777777777665553    233445555555555444554444


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHH-----------HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH----
Q 024699          139 TQIKGLTKDVNRLEAENKQLIAMRADI-----------DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISM----  203 (264)
Q Consensus       139 ~qvq~l~qeL~r~~ad~qqipal~aEi-----------e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlism----  203 (264)
                      .........+..+...++.+...-.+.           ..+.++|.++-.-++-=-....++=+.++.+..||-++    
T Consensus        85 ~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~  164 (237)
T PF00261_consen   85 NREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE  164 (237)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence            444443333333333333333333333           33444444443333333333444444455555555332    


Q ss_pred             ----------HHHHHHHHHHHhhhhhcc
Q 024699          204 ----------AREIEKLRAELLNTERRA  221 (264)
Q Consensus       204 ----------arEvEKLRaElanae~ra  221 (264)
                                -..|..|...|.+++.|+
T Consensus       165 ~~~~~re~~~e~~i~~L~~~lkeaE~Ra  192 (237)
T PF00261_consen  165 EKASEREDEYEEKIRDLEEKLKEAENRA  192 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      111555555566666554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.77  E-value=47  Score=30.64  Aligned_cols=51  Identities=18%  Similarity=0.362  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 024699          118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE  171 (264)
Q Consensus       118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqE  171 (264)
                      .||.|++.|+..|.+.-..+..+-......+.++..+   +--|+.+||.+|.|
T Consensus        53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ee---y~~Lk~~in~~R~e  103 (230)
T PF10146_consen   53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEE---YKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            5666777777776666555555555555555555532   23455666666666

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=80.41  E-value=57  Score=31.41  Aligned_cols=30  Identities=17%  Similarity=0.334  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 024699          144 LTKDVNRLEAENKQLIAMRADIDGIRSELV  173 (264)
Q Consensus       144 l~qeL~r~~ad~qqipal~aEie~lrqElq  173 (264)
                      |..||---+.-+-.+--|+.|--.|||||+
T Consensus       152 LESELdEke~llesvqRLkdEardlrqela  181 (333)
T KOG1853|consen  152 LESELDEKEVLLESVQRLKDEARDLRQELA  181 (333)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444334444444455555566666664

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=80.02  E-value=46  Score=33.58  Aligned_cols=52  Identities=15%  Similarity=0.204  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699          129 KLNSSRQELTTQIKGLTKDVNRLE----AENKQLIAMRADIDGIRSELVEARRAFE  180 (264)
Q Consensus       129 ~L~~~RQeL~~qvq~l~qeL~r~~----ad~qqipal~aEie~lrqElqr~Raa~E  180 (264)
                      .+...-..|.+++..+.-+|.-+.    .+.-+|+.++++|..|+++|...|+-+-
T Consensus       283 ~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~  338 (434)
T PRK15178        283 AIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS  338 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence            333444444445555555555443    3578899999999999999998887774

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=80.02  E-value=60  Score=31.43  Aligned_cols=44  Identities=18%  Similarity=0.298  Sum_probs=26.6

Q ss_pred             HHHHHHHHhhHHHHHHHhhhhhHh--hhhhHHHHHHHHHhhhhhHH
Q 024699           65 THLQRELTASKDEIHRLGQIIPKL--RADKEAHTRELFDRGLKLEV  108 (264)
Q Consensus        65 vaLrqeLaaaq~Elqrl~~~~~~l--~ae~e~q~R~l~ek~~KmEA  108 (264)
                      -.+.+.|....+++..+...-..+  .++.+..|-+||+..-+++.
T Consensus       264 d~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~  309 (388)
T PF04912_consen  264 DSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDP  309 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHH
Confidence            345566666666666655443333  34556777777777777775

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	8e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	9e-05

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 62.2 bits (151), Expect = 3e-11
 Identities = 30/187 (16%), Positives = 76/187 (40%), Gaps = 3/187 (1%)

Query: 39   LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
            +++++     ++    +  +    +      ++   +D+I  +     KL  +++     
Sbjct: 953  MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012

Query: 99   LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
            + D    L  E   ++ +     +  + + +L    ++     + L K   +LE E+  L
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072

Query: 159  IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL---L 215
                A++    +EL       E E +A   ++E + + +NN +   RE+E   ++L   L
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132

Query: 216  NTERRAC 222
             +E+ A 
Sbjct: 1133 ESEKAAR 1139

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.4 bits (149), Expect = 6e-11
 Identities = 33/186 (17%), Positives = 74/186 (39%), Gaps = 4/186 (2%)

Query: 38   TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
            T + +I+    ++  +  +N     +   L+  ++     +    +    L   K  H  
Sbjct: 980  TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039

Query: 98   ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157
             + +  ++L+ E ++ + +     +L  E   L+    EL  QI  L   + + E E + 
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099

Query: 158  LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA----MENNLISMAREIEKLRAE 213
             +A   D    ++  ++  R  E      +E +E ++A     E     ++ E+E L+ E
Sbjct: 1100 ALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159

Query: 214  LLNTER 219
            L +T  
Sbjct: 1160 LEDTLD 1165

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 27/176 (15%), Positives = 73/176 (41%)

Query: 39   LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
             +E  +    E+  +  ++    ++   LQ +L A  +      ++  +L A K+     
Sbjct: 869  TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928

Query: 99   LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
            L +   ++E E   S+ ++AE  +++ ++  L    +E     + L  +    + + K++
Sbjct: 929  LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988

Query: 159  IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214
                  ++   ++L + R+  E         + +++    NL  +  + E + +EL
Sbjct: 989  EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 31/179 (17%), Positives = 71/179 (39%)

Query: 39   LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
            L+E+++ +                    L+  L   +  I    +   +L+A+K+   ++
Sbjct: 897  LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956

Query: 99   LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
            + D   +LE E  A + ++ E V    +++K+      +  Q   LTK+   LE     L
Sbjct: 957  MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDL 1016

Query: 159  IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217
                A+ +     L + +   E      E ++++++     L  + R++E   ++L   
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 24/164 (14%), Positives = 63/164 (38%), Gaps = 7/164 (4%)

Query: 41   EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELF 100
             E E + + + ++ +++   I +     ++   S+ E+ ++ + +    +D      EL 
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080

Query: 101  DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA 160
             +  +L+ +L   E    E+    A ++   S +     +I+ L   ++ L+ + +   A
Sbjct: 1081 AQIAELKAQLAKKE---EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA 1137

Query: 161  MRADIDGIRS----ELVEARRAFEFEKKANEEQIEQKQAMENNL 200
             R   +  +     EL   +   E        Q E + +   + 
Sbjct: 1138 ARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 11/159 (6%)

Query: 67   LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE 126
               EL  +K+   +    + +L         E      KL+ E      + AE  ++R  
Sbjct: 862  KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETE----LYAEAEEMRV- 916

Query: 127  VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA----MRADIDGIRSELVEARRAFEFE 182
              +L + +QEL   +  +   +   E  ++QL A    M+  +  +  +L E   A +  
Sbjct: 917  --RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974

Query: 183  KKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRA 221
            +        + + ME++++ M  +  KL  E    E R 
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 35/187 (18%), Positives = 70/187 (37%), Gaps = 20/187 (10%)

Query: 40   EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTREL 99
             ++++I+ R + R    +    +    LQR++     E   L + +  L       T +L
Sbjct: 906  LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965

Query: 100  FDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLI 159
                      LR SE           E +   +    L  +I  L K++++ + E K + 
Sbjct: 966  R----SDVERLRMSE----------EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011

Query: 160  ----AMRADIDGIRSELVEARRAFEFEKKANEEQIEQ--KQAMENNLISMAREIEKLRAE 213
                  + + + + SEL E     + EK+    +I    K+  E     +  E ++L  +
Sbjct: 1012 EWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELD 1071

Query: 214  LLNTERR 220
            L +   R
Sbjct: 1072 LNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 7/187 (3%)

Query: 32   MHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD 91
            M    + L+  +          +    H         R   A       L  I+      
Sbjct: 838  MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCY 897

Query: 92   KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151
            +    +       KL++E R+ E  +   + L  ++ +L     E   + K L + +N L
Sbjct: 898  RRMMAKRELK---KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL 954

Query: 152  EAENKQLIA-MRADIDGIRSELVEARRAFEFEKKANEE---QIEQKQAMENNLISMAREI 207
            E         +R+D++ +R    EA+ A        EE     ++    +    ++    
Sbjct: 955  EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014

Query: 208  EKLRAEL 214
            +K + E 
Sbjct: 1015 DKYKHET 1021

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 15/135 (11%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 87  KLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146
                 +        + + ++  +R           L+A V      R+ +        +
Sbjct: 851 GYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMM------AKR 904

Query: 147 DVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE 206
           ++ +L+ E + +   +    G+ +++++ +R  + + K  +  +E+   +E    +   +
Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964

Query: 207 IEKLRAELLNTERRA 221
           +      L  +E  A
Sbjct: 965 LRSDVERLRMSEEEA 979

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 5e-06
 Identities = 42/243 (17%), Positives = 80/243 (32%), Gaps = 65/243 (26%)

Query: 33  HFHPMTLE-EEIEIQRREMHRIISENRHAI--D-DNTHLQ------------RELTASKD 76
           H H M  E  E + Q ++   I+S    A   + D   +Q              +  SKD
Sbjct: 3   HHHHMDFETGEHQYQYKD---ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59

Query: 77  EIHRLGQIIPKLRADKEAHTRELFDRGL---------KLEVELRASEPVRAEVVQLRAEV 127
            +    ++   L + +E   ++  +  L          ++ E R    +    ++ R  +
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 128 Q-------KLNSSRQELTTQIKGLTKDVNRLEAEN-----------KQLIAMRADIDGIR 169
                   K N SR +   +++   + +  L               K  +A    +D   
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLR---QALLELRPAKNVLIDGVLGSGKTWVA----LDVCL 172

Query: 170 SELVEARRAFE-F-----EKKANEEQIEQKQA----MENNLISMAREIE--KLRAELLNT 217
           S  V+ +  F+ F        + E  +E  Q     ++ N  S +      KLR   +  
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 218 ERR 220
           E R
Sbjct: 233 ELR 235

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 26/183 (14%), Positives = 70/183 (38%), Gaps = 3/183 (1%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
             E ++  + ++     +   A  D   L R +   ++E+ R  + +       E   + 
Sbjct: 60  YSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKA 119

Query: 99  LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
             +    ++V    ++    ++     ++++     ++   + + + + +  +E++ ++ 
Sbjct: 120 ADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERA 179

Query: 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218
                  +G  +EL E  +      K+ E Q E+    E+       EI+ L  +L   E
Sbjct: 180 EERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKY---EEEIKVLSDKLKEAE 236

Query: 219 RRA 221
            RA
Sbjct: 237 TRA 239

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 25/172 (14%), Positives = 48/172 (27%), Gaps = 6/172 (3%)

Query: 45   IQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGL 104
            I+R           + ID       +      E  R+     K  A        +  + L
Sbjct: 840  IKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKK-L 898

Query: 105  KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR-LEAENKQLIAMRA 163
            +     ++      E       VQ    + +    + + L    N  L +   QL  +  
Sbjct: 899  ENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNY 958

Query: 164  DIDGIRSELVEAR-RAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214
            +      EL E +   F  +    +   E  +      +   ++IE L    
Sbjct: 959  NGV---PELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHH 1007

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.93
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.9
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.81
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.9
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.86
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	95.59
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.5
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.46
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	94.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.93
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	93.93
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.21
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	92.95
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	92.39
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	92.3
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	91.91
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	91.55
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	91.54
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	91.34
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	90.98
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	90.78
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	90.49
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	90.12
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	89.45
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	89.26
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	89.06
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	88.98
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	88.74
3plt_A	234	Sphingolipid long chain base-responsive protein L;	88.69
1jcd_A	52	Major outer membrane lipoprotein; protein folding,	88.32
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	87.13
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	86.47
2w6b_A	56	RHO guanine nucleotide exchange factor 7; X-RAY cr	86.02
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	85.51
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	85.37
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	85.32
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	85.13
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	84.75
3lay_A	175	Zinc resistance-associated protein; salmonella typ	84.46
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	84.35
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	84.34
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	83.83
4e61_A	106	Protein BIM1; EB1-like motif, coiled-coil, spindle	82.98
1use_A	45	VAsp, vasodilator-stimulated phosphoprotein; signa	82.23
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	82.17
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	81.96
2xnx_M	146	M protein, M1-BC1; cell adhesion, virulence factor	81.75
3bas_A	89	Myosin heavy chain, striated muscle/general contro	81.35
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	80.86

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.93  E-value=0.026  Score=59.72  Aligned_cols=122  Identities=11%  Similarity=0.092  Sum_probs=44.1

Q ss_pred             cccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 024699           54 ISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSS  133 (264)
Q Consensus        54 l~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~  133 (264)
                      ...|..|-..-..|++.|.....+...|...+..+....+.++-+|       +.++...+....|+.++...+..|...
T Consensus       920 ~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L-------~~~l~~le~~~~e~~~~~~~v~~L~~e  992 (1080)
T 2dfs_A          920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL-------RSDVERLRMSEEEAKNATNRVLSLQEE  992 (1080)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445444445555555444454444444444443334444444       333333333444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHhhhhhhh
Q 024699          134 RQELTTQIKGLTKDVNRLEAENKQL-IAMRADIDGIRSELVEARRAFEFE  182 (264)
Q Consensus       134 RQeL~~qvq~l~qeL~r~~ad~qqi-pal~aEie~lrqElqr~Raa~EyE  182 (264)
                      -.+|..+++.+.+|...++...+++ ..|...+..|..|.+.+|..++.-
T Consensus       993 ~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A          993 IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555444444443333 244455666777777777665543

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.90  E-value=0.094  Score=46.37  Aligned_cols=120  Identities=13%  Similarity=0.142  Sum_probs=74.7

Q ss_pred             cccchHHHHHHHHhhHHHHHHHhhhhhHhhhh---hHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 024699           60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRAD---KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQE  136 (264)
Q Consensus        60 LaathvaLrqeLaaaq~Elqrl~~~~~~l~ae---~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQe  136 (264)
                      |...-..|..+++..+..+..+...+.+++.+   .+..+-.+-.++.+.+..+-++-.- .|+..+..|+..+....+.
T Consensus        30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~-kE~~aL~kEie~~~~~i~~  108 (256)
T 3na7_A           30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSE-RELRSLNIEEDIAKERSNQ  108 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS-SHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555555555444444433   3466777777777777777655543 6788888888888877777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 024699          137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK  183 (264)
Q Consensus       137 L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEK  183 (264)
                      |..++..+...+...+.++   ..+.++++.++.++...++.++-+-
T Consensus       109 lE~eile~~e~ie~~~~~l---~~~~~~l~~~~~~l~~~~~~~~~~~  152 (256)
T 3na7_A          109 ANREIENLQNEIKRKSEKQ---EDLKKEMLELEKLALELESLVENEV  152 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777665554   3445556666666666665555443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.81  E-value=0.069  Score=47.24  Aligned_cols=58  Identities=16%  Similarity=0.284  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 024699          115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV  173 (264)
Q Consensus       115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElq  173 (264)
                      .++.++..+..++.++...-.++.+++....+.|.... +++.+-+|..||+.+..++.
T Consensus        50 ~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~  107 (256)
T 3na7_A           50 NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSN  107 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444443222 44444455555544444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.90  E-value=0.051  Score=51.88  Aligned_cols=28  Identities=14%  Similarity=0.109  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699          192 QKQAMENNLISMAREIEKLRAELLNTER  219 (264)
Q Consensus       192 q~qaMEknlismarEvEKLRaElanae~  219 (264)
                      +.+.|.+.+..+.+|+.++++|+...+.
T Consensus       552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~~  579 (597)
T 3oja_B          552 QLDNKRAKQAELRQETSLKRQKVKQLEA  579 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444455666666666655443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.86  E-value=0.033  Score=58.94  Aligned_cols=82  Identities=15%  Similarity=0.195  Sum_probs=38.9

Q ss_pred             HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT  145 (264)
Q Consensus        66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~  145 (264)
                      .|+++|...+..+..+...+.    +-+.++..|-+...+++.++.   ..+.++..+..++..|....++|..+++.+.
T Consensus       861 ~L~~eL~el~~~L~~le~~l~----ele~~l~~Le~e~~~l~~~L~---~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele  933 (1184)
T 1i84_S          861 AKDEELQRTKERQQKAEAELK----ELEQKHTQLCEEKNLLQEKLQ---AETELYAEAEEMRVRLAAKKQELEEILHEME  933 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555444433332    233344444444444444333   2334444445555555555555555555555


Q ss_pred             HHHHHHHHh
Q 024699          146 KDVNRLEAE  154 (264)
Q Consensus       146 qeL~r~~ad  154 (264)
                      .++.....+
T Consensus       934 ~elee~ee~  942 (1184)
T 1i84_S          934 ARIEEEEER  942 (1184)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            555444443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.50  E-value=0.52  Score=55.31  Aligned_cols=59  Identities=10%  Similarity=0.165  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699          161 MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTER  219 (264)
Q Consensus       161 l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~  219 (264)
                      +++++..+..++..+.+....=++.=.+.-+.++.++.++-...+|.++|..|+..+++
T Consensus      2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~ 2070 (3245)
T 3vkg_A         2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKN 2070 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555554444444455555556666666666666666666555443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.46  E-value=0.71  Score=39.66  Aligned_cols=33  Identities=30%  Similarity=0.339  Sum_probs=19.5

Q ss_pred             hhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHH
Q 024699           90 ADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRA  125 (264)
Q Consensus        90 ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~ra  125 (264)
                      +-.|..+|+|-+++..+++   ..+.|-+|+.++++
T Consensus        44 ~~~E~~~rELq~~~~~L~~---~k~~Leke~~~LQa   76 (168)
T 3o0z_A           44 SQLESLNRELQERNRILEN---SKSQTDKDYYQLQA   76 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            4445566666666666666   55555555555555

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=94.94  E-value=0.15  Score=38.90  Aligned_cols=79  Identities=18%  Similarity=0.305  Sum_probs=60.4

Q ss_pred             HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT  145 (264)
Q Consensus        66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~  145 (264)
                      -||+.|..+..|-.+|...+..++.       .+-+=-.|.|.|+.....+-.|+.-++-++..+.-.|-+|-++|++|+
T Consensus         4 eLr~qi~~l~~e~~~l~~e~dn~~~-------~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~   76 (86)
T 3swk_A            4 ELRRQVDQLTNDKARVEVERDNLAE-------DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ   76 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3666666666665555555554442       222335688999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 024699          146 KDVNRL  151 (264)
Q Consensus       146 qeL~r~  151 (264)
                      .||.=+
T Consensus        77 eEl~fL   82 (86)
T 3swk_A           77 EEIAFL   82 (86)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.93  E-value=0.54  Score=44.76  Aligned_cols=36  Identities=8%  Similarity=0.195  Sum_probs=21.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 024699          157 QLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ  192 (264)
Q Consensus       157 qipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq  192 (264)
                      ++-+.+.+++.+++|..+.+..++..|+.-.++-++
T Consensus       531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e  566 (597)
T 3oja_B          531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQE  566 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence            344455666666666666666666666655555444

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=93.93  E-value=2.9  Score=36.36  Aligned_cols=92  Identities=21%  Similarity=0.277  Sum_probs=41.7

Q ss_pred             HHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD  147 (264)
Q Consensus        68 rqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qe  147 (264)
                      ++.+..++.|+.-+...-..+.+|-|.++-.+=.+...+..   ...-++.|+...+.   ++.....+...++..|..+
T Consensus        23 ~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~---~~~~L~~E~e~~k~---K~~~~~~e~~~~~~~Lq~e   96 (189)
T 2v71_A           23 KQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA---DNQRLKYEVEALKE---KLEHQYAQSYKQVSVLEDD   96 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555444444444443333   22333444444443   3333444444444444444


Q ss_pred             HHHHHHhhhhhHHHHHHH
Q 024699          148 VNRLEAENKQLIAMRADI  165 (264)
Q Consensus       148 L~r~~ad~qqipal~aEi  165 (264)
                      +..++..+.++-.=..+|
T Consensus        97 l~~l~~~~~~l~~~ireL  114 (189)
T 2v71_A           97 LSQTRAIKEQLHKYVREL  114 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.21  E-value=6.8  Score=46.30  Aligned_cols=50  Identities=10%  Similarity=0.192  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          161 MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKL  210 (264)
Q Consensus       161 l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKL  210 (264)
                      ++++|..+...|..+.+.|+.-.+-...+-.++..+++.|..-.+=|..|
T Consensus      2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A         2033 IVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444444444444444444433344444445555555544433333333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=92.95  E-value=3  Score=33.48  Aligned_cols=110  Identities=21%  Similarity=0.318  Sum_probs=53.2

Q ss_pred             HHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024699           95 HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE  174 (264)
Q Consensus        95 q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr  174 (264)
                      +|+.+-+.+.+|+..+...+..+.+|..-   ..+|...+..|..++++-+.-++-+.--...+..-+.+++.--.|+  
T Consensus        14 E~~~~~eel~~lke~l~k~e~~r~ele~~---~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el--   88 (129)
T 2fxo_A           14 EMASMKEEFTRLKEALEKSEARRKELEEK---MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM--   88 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--
Confidence            33444444444444444444444444322   2244444444444444444444434333344444444444333333  


Q ss_pred             HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          175 ARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKL  210 (264)
Q Consensus       175 ~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKL  210 (264)
                       -+-++.+...+.++....+-|+.++-.+-.+|+-|
T Consensus        89 -~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           89 -NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             45566666667777777666666665555555544

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=92.39  E-value=3.4  Score=32.71  Aligned_cols=77  Identities=12%  Similarity=0.208  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699          117 RAEVVQLRAEVQKLNSSRQELTTQIKGLT-KDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK  193 (264)
Q Consensus       117 k~El~q~raE~q~L~~~RQeL~~qvq~l~-qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~  193 (264)
                      -+.|-..+.....+...+++|..+++.+. +-..+++..+.+|-.|+.||+.=..|++++..+++--...+..+..+.
T Consensus        14 ~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~   91 (107)
T 2no2_A           14 TKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEF   91 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555556666677788888888765 334567888889999999999999999998887776666666666665

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=92.30  E-value=1.3  Score=44.08  Aligned_cols=41  Identities=17%  Similarity=0.350  Sum_probs=19.4

Q ss_pred             HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          174 EARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL  214 (264)
Q Consensus       174 r~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEl  214 (264)
                      -+|.-|.|-|..=..++.+.+++++||.....+|.||..+|
T Consensus       114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI  154 (562)
T 3ghg_A          114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI  154 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444555555555555555555554443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=91.91  E-value=5.9  Score=34.46  Aligned_cols=80  Identities=19%  Similarity=0.266  Sum_probs=65.2

Q ss_pred             HHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHH
Q 024699           94 AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE-NKQLIAMRADIDGIRSEL  172 (264)
Q Consensus        94 ~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad-~qqipal~aEie~lrqEl  172 (264)
                      ...-++.+-|.-||+      .|-+||.++..-+..|...-..|..+++.....+..++++ +.++..|..||..++.+.
T Consensus        31 ~El~EFqesSrELE~------ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~  104 (189)
T 2v71_A           31 DELVEFQEGSRELEA------ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIK  104 (189)
T ss_dssp             HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445577788889998      4567888888888888888888888888888888888877 667888889998888888


Q ss_pred             HHHhhhh
Q 024699          173 VEARRAF  179 (264)
Q Consensus       173 qr~Raa~  179 (264)
                      ..+...|
T Consensus       105 ~~l~~~i  111 (189)
T 2v71_A          105 EQLHKYV  111 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777766

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=91.55  E-value=2.5  Score=34.11  Aligned_cols=81  Identities=16%  Similarity=0.298  Sum_probs=47.3

Q ss_pred             HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT  145 (264)
Q Consensus        66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~  145 (264)
                      -|+..|..|+.=|.-....|..++.           .+.++++++-.+.-|++-+.--+.|-..=-+.|..+.++.+.|.
T Consensus        28 ~L~~~L~~AEeaL~~Kq~~idelk~-----------ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~   96 (110)
T 2v4h_A           28 DLRQQLQQAEEALVAKQELIDKLKE-----------EAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ   96 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHH
Confidence            4566677776666665566666653           33334455545555555555555555555566666666666666


Q ss_pred             HHHHHHHHhhhh
Q 024699          146 KDVNRLEAENKQ  157 (264)
Q Consensus       146 qeL~r~~ad~qq  157 (264)
                      .+|..++..+++
T Consensus        97 ~ql~~Lq~q~~~  108 (110)
T 2v4h_A           97 EQLEQLQREFNK  108 (110)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            666666655543

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=91.54  E-value=1.5  Score=35.35  Aligned_cols=87  Identities=17%  Similarity=0.262  Sum_probs=52.0

Q ss_pred             HHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL  144 (264)
Q Consensus        65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l  144 (264)
                      +-|+.+|.....|-..|......-+.|.-.||-+|.+++..-|..|.   .|+.-..|+..+++.   .-+.|+..-..+
T Consensus        16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~---~Lqq~fsq~q~~vq~---qL~~Lt~~Re~V   89 (112)
T 1x79_B           16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLE---ELQQGLSQAKRDVQE---QMAVLMQSREQV   89 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            45677777777777777777777888888999999999999998443   455555555555443   223344444445


Q ss_pred             HHHHHHHHHhhhh
Q 024699          145 TKDVNRLEAENKQ  157 (264)
Q Consensus       145 ~qeL~r~~ad~qq  157 (264)
                      ..+|.+++.||..
T Consensus        90 ~~eL~rLQ~eNd~  102 (112)
T 1x79_B           90 SEELVRLQKDNDS  102 (112)
T ss_dssp             HTC----------
T ss_pred             HHHHHHHHhhccc
Confidence            5555566655543

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=91.34  E-value=3.9  Score=32.92  Aligned_cols=94  Identities=18%  Similarity=0.204  Sum_probs=64.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK  193 (264)
Q Consensus       114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~  193 (264)
                      +.|-.++.|++-++.++...|++|....+.-+.|-      ..||..|..-+++-.+.|.-+|.+|.--|.   +-.+|+
T Consensus         9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~------k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~---~vq~qL   79 (112)
T 1x79_B            9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDS------SHQISALVLRAQASEILLEELQQGLSQAKR---DVQEQM   79 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            56777889999999999999999999866655553      367778888888888888888888865544   455667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 024699          194 QAMENNLISMAREIEKLRAELLN  216 (264)
Q Consensus       194 qaMEknlismarEvEKLRaElan  216 (264)
                      +..-..-=.+..|+.+|.+|=.+
T Consensus        80 ~~Lt~~Re~V~~eL~rLQ~eNd~  102 (112)
T 1x79_B           80 AVLMQSREQVSEELVRLQKDNDS  102 (112)
T ss_dssp             HHHHHHHHHHHTC----------
T ss_pred             HHHHHHHHHHHHHHHHHHhhccc
Confidence            77777777777777887776444

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=90.98  E-value=3.4  Score=33.00  Aligned_cols=23  Identities=35%  Similarity=0.671  Sum_probs=12.6

Q ss_pred             HHHHhhHHHHHHHhhhhhHhhhh
Q 024699           69 RELTASKDEIHRLGQIIPKLRAD   91 (264)
Q Consensus        69 qeLaaaq~Elqrl~~~~~~l~ae   91 (264)
                      .+|..++.||..|+..+.+++.|
T Consensus        29 ~~l~~~k~Ei~elrr~iq~L~~e   51 (129)
T 3tnu_B           29 DDLRNTKHEISEMNRMIQRLRAE   51 (129)
T ss_dssp             -----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777777776644

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=90.78  E-value=4.5  Score=33.19  Aligned_cols=64  Identities=11%  Similarity=0.159  Sum_probs=34.4

Q ss_pred             hHhhhhhHHHHHHHHHh--hhhhHHhhhhc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           86 PKLRADKEAHTRELFDR--GLKLEVELRAS---EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN  149 (264)
Q Consensus        86 ~~l~ae~e~q~R~l~ek--~~KmEAelra~---e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~  149 (264)
                      ..+...-|.+|+++-.+  .-.+..+--++   -.+=.|+.+++.++..|...-+++..++..|..+|.
T Consensus        31 ~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~   99 (138)
T 3hnw_A           31 QRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELI   99 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444556677777744  66665543333   334467777776666655544444444444444443

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=90.49  E-value=1.2  Score=34.27  Aligned_cols=42  Identities=21%  Similarity=0.288  Sum_probs=30.8

Q ss_pred             hhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699          104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT  145 (264)
Q Consensus       104 ~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~  145 (264)
                      .-||+||++-..+..||-+++++.+.+.+--+|--.+-+.|.
T Consensus        17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~   58 (81)
T 1wt6_A           17 EALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLE   58 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999988887654444444444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=90.12  E-value=6.2  Score=31.57  Aligned_cols=88  Identities=19%  Similarity=0.303  Sum_probs=70.9

Q ss_pred             hhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 024699          103 GLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE  182 (264)
Q Consensus       103 ~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyE  182 (264)
                      +.+-+.+++   .+..++.++...+.+....|++|..+...+.++...++..++.--.+-++.+.+..-|..-+..++..
T Consensus         8 ~~~~e~E~~---~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~   84 (129)
T 2fxo_A            8 SAEREKEMA---SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAK   84 (129)
T ss_dssp             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            345556555   46789999999999999999999999999999999999999999999999999999888888776655


Q ss_pred             hhhhHHHHHHH
Q 024699          183 KKANEEQIEQK  193 (264)
Q Consensus       183 Kk~~~e~~Eq~  193 (264)
                      =+.-.+.++..
T Consensus        85 l~el~~rleee   95 (129)
T 2fxo_A           85 VKEMNKRLEDE   95 (129)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=89.45  E-value=6.3  Score=32.17  Aligned_cols=17  Identities=29%  Similarity=0.458  Sum_probs=10.5

Q ss_pred             HHHHHHhhHHHHHHHhh
Q 024699           67 LQRELTASKDEIHRLGQ   83 (264)
Q Consensus        67 LrqeLaaaq~Elqrl~~   83 (264)
                      |+++|..+|+-|+.--+
T Consensus        30 Lq~qLTqAQe~l~~~ea   46 (121)
T 3mq7_A           30 LQQELTEAQKGFQDVEA   46 (121)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            56667777666655543

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=89.06  E-value=4.6  Score=32.36  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=8.4

Q ss_pred             HHHHhhHHHHHHHhhhhhHhhhh
Q 024699           69 RELTASKDEIHRLGQIIPKLRAD   91 (264)
Q Consensus        69 qeLaaaq~Elqrl~~~~~~l~ae   91 (264)
                      .+|..++.||..|+..|.++.+|
T Consensus        31 ~~l~~~k~Ei~elrr~iq~L~~e   53 (131)
T 3tnu_A           31 ELVQSGKSEISELRRTMQNLEIE   53 (131)
T ss_dssp             ----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677777776666666644

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=88.98  E-value=7.9  Score=31.18  Aligned_cols=64  Identities=19%  Similarity=0.335  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 024699          138 TTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIE  208 (264)
Q Consensus       138 ~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvE  208 (264)
                      ..++..|.+++.+...++-+||.|++.++--+.....-|+       ++-.+-+-...++..|-++-+++.
T Consensus        44 q~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERa-------dREkl~~eKe~L~~ql~~Lq~q~~  107 (110)
T 2v4h_A           44 QELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERH-------AREKLVEKKEYLQEQLEQLQREFN  107 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchh-------hHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3445567778888888888888888887776655554444       444444444444444444444443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=88.74  E-value=11  Score=32.37  Aligned_cols=118  Identities=14%  Similarity=0.128  Sum_probs=82.3

Q ss_pred             hhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 024699           82 GQIIPKLRADKEAHTRELFDRGLKLEVELRAS-EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA  160 (264)
Q Consensus        82 ~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~-e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipa  160 (264)
                      .-....+++|.|.     ..|..|.-+|++.. -.+-.-+.-++.=+..|...|.+|-.++..|...|..-+.+-.+...
T Consensus        16 ~E~n~kLk~EsE~-----~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se   90 (168)
T 3o0z_A           16 EEANDLLRTESDT-----AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSE   90 (168)
T ss_dssp             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345667777765     45667777877643 33333333344556677788888888888888888888888888777


Q ss_pred             HHHHH----HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 024699          161 MRADI----DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMA  204 (264)
Q Consensus       161 l~aEi----e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisma  204 (264)
                      +.+|+    .+|..|+.+.+....-=...+-.+.|.+-.+||--.+|-
T Consensus        91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77765    778999999988776666667777777777887665554

>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}

Probab=88.69  E-value=4.7  Score=36.19  Aligned_cols=93  Identities=22%  Similarity=0.279  Sum_probs=62.3

Q ss_pred             hhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 024699           91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS  170 (264)
Q Consensus        91 e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrq  170 (264)
                      .+--++|..+..+...|.   ++.+.|.--..+..+|++|..-. =-+.++..|.+||.++.+++.   .--+.|.++..
T Consensus        87 ~~~d~yR~~LK~IR~~E~---svqp~R~~R~~l~~~I~kLk~k~-P~s~kl~~LeqELvraEae~l---vaEAqL~n~kR  159 (234)
T 3plt_A           87 DKYDQYRVTLKSIRNIEA---SVQPSRDRKEKITDEIAHLKYKD-PQSTKIPVLEQELVRAEAESL---VAEAQLSNITR  159 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHhh---HHHHHHHHhHH
Confidence            344678888888888887   66677777777778887776432 235667778888887777762   22356666665


Q ss_pred             HHHHHhhhhhhhhhhhHHHHHH
Q 024699          171 ELVEARRAFEFEKKANEEQIEQ  192 (264)
Q Consensus       171 Elqr~Raa~EyEKk~~~e~~Eq  192 (264)
                        +.+|.+|.+.=++-.|.-|.
T Consensus       160 --~~lKEa~~~~f~Al~E~aEK  179 (234)
T 3plt_A          160 --EKLKAAYSYMFDSLRELSEK  179 (234)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHH
Confidence              45677777776666665554

>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A

Probab=88.32  E-value=1.9  Score=30.38  Aligned_cols=42  Identities=10%  Similarity=0.214  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699          136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE  180 (264)
Q Consensus       136 eL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E  180 (264)
                      +|+.+|+.|+.++..+++|+   .+++.++...+.|-.|+-.-|+
T Consensus         8 ~Lss~V~~L~~kVdqLssdV---~al~~~v~~ak~eA~RAN~RlD   49 (52)
T 1jcd_A            8 QASSDAQTANAKADQASNDA---NAARSDAQAAKDDAARANQRAD   49 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhh
Confidence            34445555555554444433   3555666677777776655443

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=87.13  E-value=2.5  Score=34.22  Aligned_cols=44  Identities=16%  Similarity=0.216  Sum_probs=33.2

Q ss_pred             HHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhch
Q 024699           71 LTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE  114 (264)
Q Consensus        71 Laaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e  114 (264)
                      |...+.||.+|...+..|+.|.-..|..|-.++..||+||-...
T Consensus        17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r   60 (120)
T 3i00_A           17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ   60 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44466677777777777788888888899999999998765543

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=86.47  E-value=4.2  Score=31.95  Aligned_cols=78  Identities=17%  Similarity=0.310  Sum_probs=35.9

Q ss_pred             HHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699           67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK  146 (264)
Q Consensus        67 LrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~q  146 (264)
                      |...|..|..=|......|..++           +.+.++++++-.+.-|++-+.--..|.+.=-+.|..+.++.+.|..
T Consensus         7 L~~~L~~aEeaL~~kq~~id~lk-----------e~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~   75 (94)
T 3jsv_C            7 LRQQLQQAEEALVAKQELIDKLK-----------EEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQE   75 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            45555555555555444455544           3444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHhh
Q 024699          147 DVNRLEAEN  155 (264)
Q Consensus       147 eL~r~~ad~  155 (264)
                      +|..++..+
T Consensus        76 ql~~lq~q~   84 (94)
T 3jsv_C           76 QLEQLQREF   84 (94)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHH
Confidence            444444433

>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}

Probab=86.02  E-value=3.3  Score=29.68  Aligned_cols=41  Identities=12%  Similarity=0.328  Sum_probs=33.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 024699          156 KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAM  196 (264)
Q Consensus       156 qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaM  196 (264)
                      .-+=+|+.|+..|+||..+...++|.|.+++-++-.=+.-|
T Consensus        10 DtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~   50 (56)
T 2w6b_A           10 DTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV   50 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34788999999999999999999999999987664444444

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=85.51  E-value=6.3  Score=31.85  Aligned_cols=82  Identities=23%  Similarity=0.343  Sum_probs=39.9

Q ss_pred             hhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 024699           88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG  167 (264)
Q Consensus        88 l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~  167 (264)
                      ...++|.+|..|+-          .++.+|.|+..+..|.|..+   -.|.++|-.|..||.-.+...|+   ...|.+.
T Consensus         9 ~~d~rD~~Ie~Lkr----------eie~lk~ele~l~~E~q~~v---~ql~~~i~~Le~eL~e~r~~~q~---a~~e~e~   72 (120)
T 3i00_A            9 NKDEKDHLIERLYR----------EISGLKAQLENMKTESQRVV---LQLKGHVSELEADLAEQQHLRQQ---AADDCEF   72 (120)
T ss_dssp             -CCTHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred             CCCcHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            45566665554432          23455666666666666533   24666666677777665543332   3455666


Q ss_pred             HHHHHHHHh-----------hhhhhhhhh
Q 024699          168 IRSELVEAR-----------RAFEFEKKA  185 (264)
Q Consensus       168 lrqElqr~R-----------aa~EyEKk~  185 (264)
                      |+.|+..++           ...|.|+|+
T Consensus        73 Lr~e~~~l~~~~~~~~~~q~~~~e~E~kA  101 (120)
T 3i00_A           73 LRAELDELRRQREDTEKAQRSLSEIERKA  101 (120)
T ss_dssp             HHHHHHHHHTTCC----------------
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            666666553           245666665

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=85.37  E-value=9.5  Score=38.09  Aligned_cols=87  Identities=10%  Similarity=0.168  Sum_probs=53.1

Q ss_pred             HHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699           78 IHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ  157 (264)
Q Consensus        78 lqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qq  157 (264)
                      |+.....+.+-..+.+..++.+++             .||..+.|..-.-.....+-+||.-+++.|..+|.   ..+++
T Consensus        69 LKnqLEdlsKnsKdseqy~k~~~E-------------~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVd---nQlsn  132 (562)
T 3ghg_A           69 LKNSLFEYQKNNKDSHSLTTNIME-------------ILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVI---EKVQH  132 (562)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHH-------------TTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---HHHHH
T ss_pred             HHHHHHHHHhhchhHHHHHHHHHH-------------HHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            333333334445555555555544             34444444442222344444567777777776655   44588


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhh
Q 024699          158 LIAMRADIDGIRSELVEARRAFE  180 (264)
Q Consensus       158 ipal~aEie~lrqElqr~Raa~E  180 (264)
                      |-+|+.=|+.++.+|||+=.+|+
T Consensus       133 IrvLQsnLedq~~kIQRLEvDId  155 (562)
T 3ghg_A          133 IQLLQKNVRAQLVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887765

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=85.32  E-value=19  Score=35.59  Aligned_cols=57  Identities=21%  Similarity=0.219  Sum_probs=44.9

Q ss_pred             HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHH
Q 024699           66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRA  125 (264)
Q Consensus        66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~ra  125 (264)
                      .-+-+|++-|.||-|+....++++++-|.-+.+.-.+...++||   .+++|+.=.++.+
T Consensus         6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~ae---NeaikkrNa~aka   62 (497)
T 3iox_A            6 DYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAE---NTAIKKRNADAKA   62 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHH
Confidence            45678999999999999999999999999999998888888884   4445444443333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=84.75  E-value=11  Score=31.89  Aligned_cols=35  Identities=17%  Similarity=0.310  Sum_probs=19.0

Q ss_pred             HHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 024699           99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQE  136 (264)
Q Consensus        99 l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQe  136 (264)
                      -|++..-||-+|   -..|.+|...+.-++.|...|.+
T Consensus        11 Ain~qs~LeD~L---~~~R~el~~~~~ri~~lE~~r~~   45 (154)
T 2ocy_A           11 SVDKQSHLEEQL---NKSLKTIASQKAAIENYNQLKED   45 (154)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHhhccHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666532   34555666556555555555544

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=84.46  E-value=5.3  Score=34.08  Aligned_cols=26  Identities=15%  Similarity=0.333  Sum_probs=15.6

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHhhh
Q 024699          153 AENKQLIAMRADIDGIRSELVEARRA  178 (264)
Q Consensus       153 ad~qqipal~aEie~lrqElqr~Raa  178 (264)
                      .|-.+|.+|..||..+++++...|..
T Consensus       110 ~DeakI~aL~~Ei~~Lr~qL~~~R~k  135 (175)
T 3lay_A          110 PDTAKINAVAKEMESLGQKLDEQRVK  135 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666666666666666555543

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=84.35  E-value=12  Score=28.60  Aligned_cols=84  Identities=11%  Similarity=0.150  Sum_probs=54.5

Q ss_pred             HHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 024699           67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKL---NSSRQELTTQIKG  143 (264)
Q Consensus        67 LrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L---~~~RQeL~~qvq~  143 (264)
                      ..++...+..+|......++.+..|.   -.   ..+..+|..+-   -...=|.|...|++.+   .+.|..+.++|..
T Consensus         6 YE~df~~~~~~i~~~l~~~~~~~ge~---Rk---~~i~~ie~~ld---EA~ell~qMelE~~~~~~p~~~R~~~~~klr~   76 (97)
T 3onj_A            6 YESDFKTTLEQAKASLAEAPSQPLSQ---RN---TTLKHVEQQQD---ELFDLLDQMDVEVNNSIGDASERATYKAKLRE   76 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGSCHHH---HH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccChHH---HH---HHHHHHHHHHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45677777777777666666554331   11   11223333222   2223367888888888   2579999999999


Q ss_pred             HHHHHHH-HHHhhhhhH
Q 024699          144 LTKDVNR-LEAENKQLI  159 (264)
Q Consensus       144 l~qeL~r-~~ad~qqip  159 (264)
                      ..+||.+ ++.+++++-
T Consensus        77 Yk~dl~~~lk~~lk~l~   93 (97)
T 3onj_A           77 WKKTIQSDIKRPLQSLV   93 (97)
T ss_dssp             HHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            9999998 888887764

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=84.34  E-value=3.8  Score=31.29  Aligned_cols=42  Identities=17%  Similarity=0.285  Sum_probs=32.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699          113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE  154 (264)
Q Consensus       113 ~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad  154 (264)
                      .+.++.++.+++.++.+|...+.++.+++..+.+.+.-+..+
T Consensus         5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~   46 (112)
T 1l8d_A            5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA   46 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            345667778888888888888888888888888888777653

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=83.83  E-value=9.1  Score=29.24  Aligned_cols=60  Identities=23%  Similarity=0.267  Sum_probs=38.4

Q ss_pred             HHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699           93 EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN  155 (264)
Q Consensus        93 e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~  155 (264)
                      |..|...+|.|..|..   -++.+|.+-..+..+++.+.+.|..|..+.+.|.+|..--+.-+
T Consensus        12 E~KIq~avdtI~lLqm---EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl   71 (81)
T 2jee_A           12 EAKVQQAIDTITLLQM---EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL   71 (81)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666665555   23567777777777777777777777777777777765444433

>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}

Probab=82.98  E-value=7.8  Score=30.97  Aligned_cols=57  Identities=14%  Similarity=0.144  Sum_probs=45.3

Q ss_pred             hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 024699          110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV  173 (264)
Q Consensus       110 lra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElq  173 (264)
                      |-+..++.+||.+.+.++..|...-++|...++.|.+|=.=.-+-+       ..||-|.|+.+
T Consensus         3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KL-------RdIEiLcQe~~   59 (106)
T 4e61_A            3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKL-------RDIEILVHTTQ   59 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence            3466788999999999999999999999999999988866666677       55666666544

>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A

Probab=82.23  E-value=3.2  Score=28.64  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024699          142 KGLTKDVNRLEAENKQLIAMRADIDGIRSELVE  174 (264)
Q Consensus       142 q~l~qeL~r~~ad~qqipal~aEie~lrqElqr  174 (264)
                      +.+.+||++++-|.         ||++++|+.+
T Consensus        18 ~E~RkElqK~K~EI---------IeAi~~El~~   41 (45)
T 1use_A           18 EEVKKELQKVKEEI---------IEAFVQELRK   41 (45)
T ss_dssp             HHHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---------HHHHHHHHHh
Confidence            34566777666666         5777777765

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=82.17  E-value=5.8  Score=28.98  Aligned_cols=44  Identities=27%  Similarity=0.491  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699          115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL  158 (264)
Q Consensus       115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi  158 (264)
                      .+|.-|....+-||.|..+-..|+.++..|.++++++++++-++
T Consensus        17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L   60 (63)
T 2w6a_A           17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence            46777888889999999999999999999999999999988544

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=81.96  E-value=1.8  Score=27.59  Aligned_cols=26  Identities=35%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             hHHHHHHHHhhHHHHHHHhhhhhHhh
Q 024699           64 NTHLQRELTASKDEIHRLGQIIPKLR   89 (264)
Q Consensus        64 hvaLrqeLaaaq~Elqrl~~~~~~l~   89 (264)
                      ..+|+||+++.+.||-.|.--|..++
T Consensus         4 iaalkqeiaalkkeiaalkfeiaalk   29 (33)
T 4dzn_A            4 IAALKQEIAALKKEIAALKFEIAALK   29 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999888887777665

>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}

Probab=81.75  E-value=13  Score=31.23  Aligned_cols=63  Identities=24%  Similarity=0.248  Sum_probs=32.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF  179 (264)
Q Consensus       114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~  179 (264)
                      ..++.++...+...+.+.+.-+.|++++..++.+++++..++|-..+.+   .+|+.+|.-.|.+-
T Consensus        69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASR---qgLrRDLeASReAK  131 (146)
T 2xnx_M           69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASR---QSLRRDLDASREAK  131 (146)
T ss_dssp             TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC---------------------
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHH
Confidence            4455666666666666666666677777888888888888887555554   67777887777775

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=81.35  E-value=15  Score=27.67  Aligned_cols=64  Identities=17%  Similarity=0.225  Sum_probs=43.9

Q ss_pred             hhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699          104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR  177 (264)
Q Consensus       104 ~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Ra  177 (264)
                      .+.|.+++   .+..|+.++...+.+....|.+|..+...+.++-..+...       -+|++.++..|...+.
T Consensus        10 ~~~eeEm~---~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~   73 (89)
T 3bas_A           10 ARQEEEMK---EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNY   73 (89)
T ss_dssp             CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred             chhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHH
Confidence            44455444   3667888888888888888888888888888887766655       3666666655544443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=80.86  E-value=35  Score=31.52  Aligned_cols=38  Identities=16%  Similarity=0.246  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 024699          143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK  183 (264)
Q Consensus       143 ~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEK  183 (264)
                      +|.++..+.+   +.|-.+..||-.+-++|+.+|+.|+.-|
T Consensus       433 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (471)
T 3mq9_A          433 SLDAEKAQGQ---KKVEELEGEITTLNHKLQDASAEVERLR  470 (471)
T ss_dssp             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444444322   4778888888888888888888887544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	80.39

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=80.39  E-value=11  Score=33.01  Aligned_cols=54  Identities=22%  Similarity=0.344  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 024699          133 SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN  186 (264)
Q Consensus       133 ~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~  186 (264)
                      ...+|..+...++........-+.++-.++.+|+.++.++..+....+|++-+.
T Consensus       290 el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A~r~gd~e~Aae  343 (387)
T d1qvra2         290 EIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAE  343 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            333444455556666666666777777888888888888888777777777544