Citrus Sinensis ID: 024706

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEYLEQHAAMLAAKQLS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHHHHHHHcEEEEccccccccccccccccEEEccccHHHHHHHHHHHHHccccccccccEEEccEEEEEEcccccEEEEEHHHHHcccccHHHHHHHHHcccEEEEcccccccccccHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHcccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHcHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHcccccEcccHHHHHHHHHHHHHHHcccccccccEEEEcccEEEEEcccccEEEEcHHHHccccccHHHHHHHHHHHcEEEEcccccccHccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHccccccHHHHHcccHcccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MVTDVADALILNRLFRHLFNNGVIlvstsnrapdnlyerglqrdlflPFISTLKERCVVHEIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLigeheagpqEVEVVMGRklqvplgangcayfefeelcdkplgaadyFGLFKIFHTLAlegipifglhnrTAAYRFVTLVDVMYENRARLLctaegspfqlfnkivtisdaqqmaprtssrsmrndeadlcvdnelgfakdRTISRLTEMNSKEYLEQHAAMLAAKQLS
Flexible Loop (DISEMBL)
MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQqmaprtssrsmrndeadlcvdnelgfakdrtISRLTEMNSKEYLEQHAAMLAAKQLS
Low Complexity Region (SEG)
MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEYLEQHAAMLAAKQLS
Disordered region (IsUnstruct)
****VADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTIS*********************CVDNELGF*******************************
Disordered Region (DISOPRED)
MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIG******Q**EVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDA******************LCVDNELGFAKDRTISRLTEMNSKEYLE************
Disordered Region (DISEMBL)
MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDA*************NDEADLCVDNELGFAKDRTISRLTEMNSKEYLEQHAA********
Disordered Region (DISPRO)
MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIV****************M***EADLCVDNELGFAKDRTISRLTEMNSKEYLEQHAAM*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEYLEQHAAMLAAKQLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q3V384	480	Lactation elevated protei	yes	no	0.943	0.518	0.404	1e-44
Q8WV93	481	Lactation elevated protei	yes	no	0.954	0.523	0.389	9e-44
P46441	464	Putative ATPase N2B OS=Ha	N/A	no	0.958	0.545	0.386	8e-43
Q32PX9	480	Lactation elevated protei	yes	no	0.943	0.518	0.389	3e-42
O42895	454	Uncharacterized protein C	yes	no	0.909	0.528	0.328	4e-34
Q5TYS0	503	Lactation elevated protei	no	no	0.924	0.485	0.334	3e-32
P32317	509	Protein AFG1 OS=Saccharom	yes	no	0.939	0.487	0.291	1e-24
P64612	375	Uncharacterized protein Y	N/A	no	0.840	0.592	0.299	3e-24
P64613	375	Uncharacterized protein Y	N/A	no	0.840	0.592	0.299	3e-24

>sp|Q3V384|LACE1_MOUSE Lactation elevated protein 1 OS=Mus musculus GN=Lace1 PE=2 SV=1

 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/257 (40%), Positives = 149/257 (57%), Gaps = 8/257 (3%)

Query: 2   VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
           VTD+ADA+IL +LF +LF NGV++V+TSNR P++LY+ GLQR  F+PFI+ LKE C   +
Sbjct: 217 VTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCDTLQ 276

Query: 62  IGSSVDYRKMTSAQQG--FYFVGKGSSEVMKQKFRDLIGEHE---AGPQEVEVVMGRKLQ 116
           + S VDYRK   A  G  +Y   +   E +  K  D + + +     P+ ++ V GR+L+
Sbjct: 277 LDSGVDYRKRELAPAGKLYYLTSEADVEAVVDKLFDELAQKQNDLTSPRILK-VQGRELR 335

Query: 117 VPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVD 176
           +       A   FEELC++PLGA+DY  L K F T+ +  IP F L  RT A RF+TL+D
Sbjct: 336 LNKACGSVADCTFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKRTQARRFITLID 395

Query: 177 VMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCV--DNELGFA 234
             Y+ + R++C+A      LF      S++ Q         +  D A L +    E  FA
Sbjct: 396 NFYDFKVRIICSASAPISSLFLHQHQDSESDQSRILMDDLGLSQDSAGLSMFTGEEEIFA 455

Query: 235 KDRTISRLTEMNSKEYL 251
             RTISRLTEM +++Y 
Sbjct: 456 FQRTISRLTEMQTEQYW 472

Mus musculus (taxid: 10090)

>sp|Q8WV93|LACE1_HUMAN Lactation elevated protein 1 OS=Homo sapiens GN=LACE1 PE=2 SV=2

 Score =  177 bits (448), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 101/259 (38%), Positives = 149/259 (57%), Gaps = 7/259 (2%)

Query: 2   VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
           VTD+ADA+IL +LF +LF NGV++V+TSNR P++LY+ GLQR  F+PFI+ LKE C   +
Sbjct: 217 VTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQ 276

Query: 62  IGSSVDYRK--MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEV--VMGRKLQV 117
           + S +DYRK  + +A + +Y   +   E +  K  D + + +       +  V GR+L++
Sbjct: 277 LDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRL 336

Query: 118 PLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDV 177
                  A   FEELC++PLGA+DY  L K F T+ L  IP F L NRT   RF+TL+D 
Sbjct: 337 NKACGTVADCTFEELCERPLGASDYLELSKNFDTIFLRNIPQFTLANRTQGRRFITLIDN 396

Query: 178 MYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEAD---LCVDNELGFA 234
            Y+ + R++C+A      LF      S+ +Q         +  D A+   +    E  FA
Sbjct: 397 FYDLKVRIICSASTPISSLFLHQHHDSELEQSRILMDDLGLSQDSAEGLSMFTGEEEIFA 456

Query: 235 KDRTISRLTEMNSKEYLEQ 253
             RTISRLTEM +++Y  +
Sbjct: 457 FQRTISRLTEMQTEQYWNE 475

Homo sapiens (taxid: 9606)

>sp|P46441|N2B_HAEIR Putative ATPase N2B OS=Haematobia irritans PE=2 SV=1

 Score =  174 bits (440), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 145/261 (55%), Gaps = 8/261 (3%)

Query: 2   VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
           VTD+ADA+IL  LF HLFN G++ ++TSNR P++LY+ GLQR  F+PFI  L  RC V  
Sbjct: 202 VTDIADAMILKSLFTHLFNEGIVCIATSNRHPNDLYKNGLQRSNFIPFIGVLLNRCNVAA 261

Query: 62  IGSSVDYRKMTSAQQGFYFVG--KGSSEVMKQKFRDLIGEHE--AGPQEVEVVMGRKLQV 117
           + S VDYR++  +    YFV     +   M++ F+ L  +      P+ +    GR L  
Sbjct: 262 MDSGVDYRRIAQSGDTNYFVTTQTDAKSQMERMFKILCSQENDIIRPRTI-THFGRDLTF 320

Query: 118 PLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDV 177
                      FEELC++PLG +DY  + + FHT+ +  +P   L  ++   RF+TL+D 
Sbjct: 321 QRTCGQVLDSNFEELCNRPLGGSDYIQIGQFFHTVLIHDVPQLTLLLKSQMRRFITLIDT 380

Query: 178 MYENRARLLCTAEGSPFQLF---NKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFA 234
           +Y+NR R++ +AE    QLF   +K   ++D Q+M          +  A +    E  FA
Sbjct: 381 LYDNRVRVVISAEVPLDQLFSFTDKPKDLADEQRMLMDDLKLGDTDTSASVFTGEEEMFA 440

Query: 235 KDRTISRLTEMNSKEYLEQHA 255
            DRTISRL EM  KEY EQ A
Sbjct: 441 FDRTISRLYEMQKKEYWEQWA 461

Haematobia irritans (taxid: 7368)

>sp|Q32PX9|LACE1_RAT Lactation elevated protein 1 OS=Rattus norvegicus GN=Lace1 PE=2 SV=1

 Score =  172 bits (435), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 100/257 (38%), Positives = 149/257 (57%), Gaps = 8/257 (3%)

Query: 2   VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
           VTD+ADA+IL +LF +LF NGV++V+TSNR P++LY+ GLQR  F+PFI+ LKE C   +
Sbjct: 217 VTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQ 276

Query: 62  IGSSVDYRK--MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHE---AGPQEVEVVMGRKLQ 116
           + S VDYRK  +T A + +Y   +     +  K  D + + +     P+ ++ V GR+L+
Sbjct: 277 LDSGVDYRKRELTPAGKLYYLTSEADVGTVMDKLFDELAQKQNDLTSPRILK-VQGRELR 335

Query: 117 VPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVD 176
           +       A   FEELC++PLGA+DY  L K F T+ +  IP F L  RT   RF+TL+D
Sbjct: 336 LNKACGTVADCTFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKRTQVRRFITLID 395

Query: 177 VMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCV--DNELGFA 234
             Y+ + R++C+A      LF      S++ Q         +  D A L +    E  F+
Sbjct: 396 NFYDFKVRIICSASVPISSLFVYQHQDSESDQSRVLMDDLGLSQDSAGLSMFTGEEEIFS 455

Query: 235 KDRTISRLTEMNSKEYL 251
             RT+SRLTEM +++Y 
Sbjct: 456 FQRTLSRLTEMQTEQYW 472

Rattus norvegicus (taxid: 10116)

>sp|O42895|YBQ2_SCHPO Uncharacterized protein C115.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC115.02c PE=3 SV=1

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 131/262 (50%), Gaps = 22/262 (8%)

Query: 2   VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
           VTDVADAL+L RLF  L   GV++  TSNRAP +LY+ G+QR+ F+P I  L+ R  V  
Sbjct: 200 VTDVADALLLRRLFEALMKYGVVIFITSNRAPSDLYKNGIQRESFIPCIKLLEHRLQVIC 259

Query: 62  IGSSVDYRKMTSAQQGFYFVGKGSSEVMK---QKFRDLIGEHEAGPQEVEVVMGRKLQVP 118
           + S  DYR++ S  +  Y     S EV K     F     E +   Q+   V GRK+ VP
Sbjct: 260 LDSPNDYRRLKSKTEDTYLYPANSPEVKKALENWFLCYADEKDPAHQDEVEVFGRKIIVP 319

Query: 119 LGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVM 178
             +   A+F FE+LC +P  AADY  L   +H   +  IP   + ++   +RF+T +D +
Sbjct: 320 KASGNVAWFTFEQLCGEPKSAADYLSLASRYHVFIVSDIPKLSIESKDLIHRFITFIDAL 379

Query: 179 YENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDN--------- 229
           Y+   +L+ ++E          V + +    AP     S  +  A   +++         
Sbjct: 380 YDTHGKLILSSE----------VPVQEIYPTAPSEVLSSTADPAAKGKIESHYHGAFGGI 429

Query: 230 ELGFAKDRTISRLTEMNSKEYL 251
           E  F   R +SRL+EM  + ++
Sbjct: 430 EEVFTFTRCLSRLSEMKKQSWI 451

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5TYS0|LCE1B_DANRE Lactation elevated protein 1 homolog B OS=Danio rerio GN=lace1b PE=2 SV=1

 Score =  139 bits (349), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 139/263 (52%), Gaps = 19/263 (7%)

Query: 2   VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
           V D+ADA+IL +LF  LF  GV++V+TSNR P+ LY+ GLQR  F+PFI  LKE C +  
Sbjct: 239 VVDIADAMILKQLFEGLFKCGVVVVATSNRPPEELYKNGLQRAAFVPFIGVLKEYCRIVS 298

Query: 62  IGSSVDY--RKMTSAQQGFYFVGKGSSE-VMKQKFRDL-IGEHEAGPQEVEVVMGRKLQV 117
           + + +D+  R+M  A + +Y   +  +E  +   F +L   +++     V  V GR++ +
Sbjct: 299 LDTGIDFRTREMKPAGRLYYISSEPDAENAVNALFEELAFRQNDVTRPRVLNVQGREVTL 358

Query: 118 PLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDV 177
                  A   F+ELC++PLGA DY  + + F T+ +  +P   L  +  A RF TL+D 
Sbjct: 359 SRTCGTIADCSFQELCEQPLGAGDYLEIARCFDTVIIRNVPYLQLGMKDQARRFTTLIDN 418

Query: 178 MYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRN-----DEAD----LCVD 228
            Y+ + R++  A+    +L ++       Q        R M +     DEA     L   
Sbjct: 419 FYDQKVRVVMLADAPLDRLLDQ------GQMTGEEARDRLMLDELGLTDEASKRITLFTA 472

Query: 229 NELGFAKDRTISRLTEMNSKEYL 251
           +E  FA  RT+SRL EM +++Y 
Sbjct: 473 DEEIFAFQRTVSRLAEMQTEQYW 495

Danio rerio (taxid: 7955)

>sp|P32317|AFG1_YEAST Protein AFG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AFG1 PE=1 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 135/302 (44%), Gaps = 54/302 (17%)

Query: 2   VTDVADALILNRLFRHLFNN--GVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVV 59
           VTDVADA+IL RL   L ++  GV+L +TSNR PD LY  G+QR  F+P I  +K R  V
Sbjct: 209 VTDVADAMILRRLMTALLSDDYGVVLFATSNRHPDELYINGVQRQSFIPCIELIKHRTKV 268

Query: 60  HEIGSSVDYRKMTSAQQGFYFVG-----KGSSEVMKQKFRDLIGE--------------- 99
             + S  DYRK+       Y+       K +S+  K +    I E               
Sbjct: 269 IFLNSPTDYRKIPRPVSSVYYFPSDTSIKYASKECKTRRETHIKEWYNYFAQASHTDDST 328

Query: 100 -----HEAGPQEVEVVMGRKLQVP-LGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLA 153
                H+        + GR+ +VP       A F F++LC +PL A DY  L K F    
Sbjct: 329 DSHTVHKTFYDYPLTIWGREFKVPKCTPPRVAQFTFKQLCGEPLAAGDYLTLAKNFEAFI 388

Query: 154 LEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRT 213
           +  IP   ++ R    RF+T +D +Y++  +L  T       LF +   I +  ++ P T
Sbjct: 389 VTDIPYLSIYVRDEVRRFITFLDAVYDSGGKLATTGAADFSSLFVEPEQILNDFELRPTT 448

Query: 214 SSRSMRNDEADLCVDNEL----GFAKD------------------RTISRLTEMNSKEYL 251
                  D  D  + +E+    GF+K+                  R +SRL++M+S +++
Sbjct: 449 K----EPDSVDTGMVDEMVEKHGFSKEIAKKSQMFALDEERFAFARALSRLSQMSSTDWV 504

Query: 252 EQ 253
            +
Sbjct: 505 TK 506

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P64612|YHCM_ECOLI Uncharacterized protein YhcM OS=Escherichia coli (strain K12) GN=yhcM PE=1 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 113/254 (44%), Gaps = 32/254 (12%)

Query: 2   VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
           V+D+ DA++L  L + LF  G+ LV+TSN  PD LY  GLQR  FLP I  +K+ C V  
Sbjct: 147 VSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMN 206

Query: 62  IGSSVDYRKMTSAQQGFYF--VGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPL 119
           + + VDYR  T  Q   +   +   +   M + +  L G        +E +  R L    
Sbjct: 207 VDAGVDYRLRTLTQAHLWLSPLHDETRAQMDKLWLALAGGKRENSPTLE-INHRPLATMG 265

Query: 120 GANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMY 179
             N      F  LC       DY  L ++FHT+ L  +P+      + A RF+ LVD  Y
Sbjct: 266 VENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFY 325

Query: 180 ENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTI 239
           E   +L+ +AE   ++++                               + L F   R +
Sbjct: 326 ERHVKLVVSAEVPLYEIYQ-----------------------------GDRLKFEFQRCL 356

Query: 240 SRLTEMNSKEYLEQ 253
           SRL EM S+EYL++
Sbjct: 357 SRLQEMQSEEYLKR 370

Escherichia coli (strain K12) (taxid: 83333)

>sp|P64613|YHCM_ECO57 Uncharacterized protein YhcM OS=Escherichia coli O157:H7 GN=yhcM PE=3 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 113/254 (44%), Gaps = 32/254 (12%)

Query: 2   VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
           V+D+ DA++L  L + LF  G+ LV+TSN  PD LY  GLQR  FLP I  +K+ C V  
Sbjct: 147 VSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMN 206

Query: 62  IGSSVDYRKMTSAQQGFYF--VGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPL 119
           + + VDYR  T  Q   +   +   +   M + +  L G        +E +  R L    
Sbjct: 207 VDAGVDYRLRTLTQAHLWLSPLHDETRAQMDKLWLALAGGKRENSPTLE-INHRPLATMG 265

Query: 120 GANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMY 179
             N      F  LC       DY  L ++FHT+ L  +P+      + A RF+ LVD  Y
Sbjct: 266 VENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFY 325

Query: 180 ENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTI 239
           E   +L+ +AE   ++++                               + L F   R +
Sbjct: 326 ERHVKLVVSAEVPLYEIYQ-----------------------------GDRLKFEFQRCL 356

Query: 240 SRLTEMNSKEYLEQ 253
           SRL EM S+EYL++
Sbjct: 357 SRLQEMQSEEYLKR 370

Escherichia coli O157:H7 (taxid: 83334)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
224143875	507	predicted protein [Populus trichocarpa]	1.0	0.520	0.871	1e-134
255585477	379	atpase n2b, putative [Ricinus communis]	0.992	0.691	0.862	1e-133
147798963	504	hypothetical protein VITISV_002904 [Viti	1.0	0.523	0.856	1e-132
225445752	502	PREDICTED: lactation elevated protein 1	1.0	0.525	0.856	1e-132
297743712	504	unnamed protein product [Vitis vinifera]	1.0	0.523	0.856	1e-132
449518075	502	PREDICTED: lactation elevated protein 1-	0.992	0.521	0.839	1e-127
449457857	497	PREDICTED: lactation elevated protein 1-	0.992	0.527	0.839	1e-127
79325316	473	AFG1-like protein [Arabidopsis thaliana]	1.0	0.558	0.825	1e-127
297803274	474	ATPase [Arabidopsis lyrata subsp. lyrata	1.0	0.556	0.821	1e-126
356498791	501	PREDICTED: lactation elevated protein 1-	0.992	0.522	0.801	1e-123

>gi|224143875|ref|XP_002325105.1| predicted protein [Populus trichocarpa] gi|118487180|gb|ABK95418.1| unknown [Populus trichocarpa] gi|222866539|gb|EEF03670.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 230/264 (87%), Positives = 246/264 (93%)

Query: 1   MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVH 60
           MVTDVADALILNRLFR LFNNGVILV TSNRAPDNLYERGLQRDLFLPFI+TLKERCV H
Sbjct: 224 MVTDVADALILNRLFRQLFNNGVILVVTSNRAPDNLYERGLQRDLFLPFIATLKERCVAH 283

Query: 61  EIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLG 120
           EIGS+VDYRKMTSAQ GFYFVGK SS ++KQKF+ LIGE +A PQEVEVVMGR LQVPLG
Sbjct: 284 EIGSAVDYRKMTSAQHGFYFVGKESSSLLKQKFQQLIGEEKACPQEVEVVMGRTLQVPLG 343

Query: 121 ANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYE 180
           ANGCAYF FEELCDKPLGAADYFGLF  FHTLALEG+PIFGLHNRTAAYRFVTLVDV+YE
Sbjct: 344 ANGCAYFPFEELCDKPLGAADYFGLFNNFHTLALEGVPIFGLHNRTAAYRFVTLVDVIYE 403

Query: 181 NRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTIS 240
           NRA LLCTAEGSP +LF++IVTI+DAQQMAPRTS+RS +ND++DLCVDNELGF KDRTIS
Sbjct: 404 NRAILLCTAEGSPLELFDRIVTIADAQQMAPRTSTRSRKNDDSDLCVDNELGFTKDRTIS 463

Query: 241 RLTEMNSKEYLEQHAAMLAAKQLS 264
           RLTEMNSKEYLEQHAAMLA KQLS
Sbjct: 464 RLTEMNSKEYLEQHAAMLAEKQLS 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585477|ref|XP_002533431.1| atpase n2b, putative [Ricinus communis] gi|223526719|gb|EEF28951.1| atpase n2b, putative [Ricinus communis]

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 226/262 (86%), Positives = 246/262 (93%)

Query: 1   MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVH 60
           MVTDVADALILNRLFRHLF+NGVILV+TSNRAPDNLYE GLQRDLFLPFI+TLKERCVVH
Sbjct: 105 MVTDVADALILNRLFRHLFSNGVILVATSNRAPDNLYEGGLQRDLFLPFIATLKERCVVH 164

Query: 61  EIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLG 120
           EIGSSVDYRKMTSAQQGFYF+G+  S+++K+KF++LI E  AGPQEVEVVMGR LQVPLG
Sbjct: 165 EIGSSVDYRKMTSAQQGFYFIGENLSDLLKEKFQELIVEQTAGPQEVEVVMGRTLQVPLG 224

Query: 121 ANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYE 180
           ANGCAYF+FEELCDKPLGAADYFGLFK FHTLALEGIPIFG HNRTAAYRFVTLVDVMYE
Sbjct: 225 ANGCAYFDFEELCDKPLGAADYFGLFKNFHTLALEGIPIFGQHNRTAAYRFVTLVDVMYE 284

Query: 181 NRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTIS 240
           NRARLLCTAEGSP +LF K++T+SDAQQ APRT++RS RNDEADLCVDNELGFAKDRT+S
Sbjct: 285 NRARLLCTAEGSPLELFAKVITVSDAQQRAPRTATRSRRNDEADLCVDNELGFAKDRTVS 344

Query: 241 RLTEMNSKEYLEQHAAMLAAKQ 262
           RLTEMNS+EYLEQHA  LA KQ
Sbjct: 345 RLTEMNSREYLEQHATALAEKQ 366

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798963|emb|CAN65875.1| hypothetical protein VITISV_002904 [Vitis vinifera]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/264 (85%), Positives = 245/264 (92%)

Query: 1   MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVH 60
           MVTDVADALILNRLF HLF+NG ILVSTSNRAPD LYE GLQRDLFLPFISTLKERC++H
Sbjct: 230 MVTDVADALILNRLFGHLFSNGCILVSTSNRAPDKLYEGGLQRDLFLPFISTLKERCIIH 289

Query: 61  EIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLG 120
           EIGSS+DYRKMTSA+QGF+F+ K +S ++KQKF+ LIGEH A PQEVEVVMGRKLQ+PLG
Sbjct: 290 EIGSSIDYRKMTSAEQGFFFIEKDASGLVKQKFQHLIGEHTAVPQEVEVVMGRKLQIPLG 349

Query: 121 ANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYE 180
           ANGCAYF FE+LCDKPLGAADYFGLF  FHTLALEG+PIFGLHNRTAAYRFVTLVDVMYE
Sbjct: 350 ANGCAYFPFEDLCDKPLGAADYFGLFXKFHTLALEGVPIFGLHNRTAAYRFVTLVDVMYE 409

Query: 181 NRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTIS 240
           N+ARLLCTAEGSP QLF +IVTI+DAQ MAPRTSSRS +ND+ DLCVDNELGFAKDRTIS
Sbjct: 410 NKARLLCTAEGSPLQLFERIVTIADAQNMAPRTSSRSRKNDDFDLCVDNELGFAKDRTIS 469

Query: 241 RLTEMNSKEYLEQHAAMLAAKQLS 264
           RLTEMNSKEYLEQHAAMLA KQLS
Sbjct: 470 RLTEMNSKEYLEQHAAMLAEKQLS 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445752|ref|XP_002271848.1| PREDICTED: lactation elevated protein 1 [Vitis vinifera]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/264 (85%), Positives = 245/264 (92%)

Query: 1   MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVH 60
           MVTDVADALILNRLF HLF+NG ILVSTSNRAPD LYE GLQRDLFLPFISTLKERC++H
Sbjct: 228 MVTDVADALILNRLFGHLFSNGCILVSTSNRAPDKLYEGGLQRDLFLPFISTLKERCIIH 287

Query: 61  EIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLG 120
           EIGSS+DYRKMTSA+QGF+F+ K +S ++KQKF+ LIGEH A PQEVEVVMGRKLQ+ LG
Sbjct: 288 EIGSSIDYRKMTSAEQGFFFIEKDASGLVKQKFQHLIGEHTAVPQEVEVVMGRKLQISLG 347

Query: 121 ANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYE 180
           ANGCAYF FE+LCDKPLGAADYFGLFK FHTLALEG+PIFGLHNRTAAYRFVTLVDVMYE
Sbjct: 348 ANGCAYFPFEDLCDKPLGAADYFGLFKKFHTLALEGVPIFGLHNRTAAYRFVTLVDVMYE 407

Query: 181 NRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTIS 240
           N+ARLLCTAEGSP QLF +IVTI+DAQ MAPRTSSRS +ND+ DLCVDNELGFAKDRTIS
Sbjct: 408 NKARLLCTAEGSPLQLFERIVTIADAQNMAPRTSSRSRKNDDFDLCVDNELGFAKDRTIS 467

Query: 241 RLTEMNSKEYLEQHAAMLAAKQLS 264
           RLTEMNSKEYLEQHAAMLA KQLS
Sbjct: 468 RLTEMNSKEYLEQHAAMLAEKQLS 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743712|emb|CBI36595.3| unnamed protein product [Vitis vinifera]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/264 (85%), Positives = 245/264 (92%)

Query: 1   MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVH 60
           MVTDVADALILNRLF HLF+NG ILVSTSNRAPD LYE GLQRDLFLPFISTLKERC++H
Sbjct: 230 MVTDVADALILNRLFGHLFSNGCILVSTSNRAPDKLYEGGLQRDLFLPFISTLKERCIIH 289

Query: 61  EIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLG 120
           EIGSS+DYRKMTSA+QGF+F+ K +S ++KQKF+ LIGEH A PQEVEVVMGRKLQ+ LG
Sbjct: 290 EIGSSIDYRKMTSAEQGFFFIEKDASGLVKQKFQHLIGEHTAVPQEVEVVMGRKLQISLG 349

Query: 121 ANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYE 180
           ANGCAYF FE+LCDKPLGAADYFGLFK FHTLALEG+PIFGLHNRTAAYRFVTLVDVMYE
Sbjct: 350 ANGCAYFPFEDLCDKPLGAADYFGLFKKFHTLALEGVPIFGLHNRTAAYRFVTLVDVMYE 409

Query: 181 NRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTIS 240
           N+ARLLCTAEGSP QLF +IVTI+DAQ MAPRTSSRS +ND+ DLCVDNELGFAKDRTIS
Sbjct: 410 NKARLLCTAEGSPLQLFERIVTIADAQNMAPRTSSRSRKNDDFDLCVDNELGFAKDRTIS 469

Query: 241 RLTEMNSKEYLEQHAAMLAAKQLS 264
           RLTEMNSKEYLEQHAAMLA KQLS
Sbjct: 470 RLTEMNSKEYLEQHAAMLAEKQLS 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518075|ref|XP_004166069.1| PREDICTED: lactation elevated protein 1-like [Cucumis sativus]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/262 (83%), Positives = 240/262 (91%)

Query: 1   MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVH 60
           MVTDVADALILNRLF HLF+NGVILV+TSNRAPD LYE GLQRDLFLPFISTLKERCV H
Sbjct: 228 MVTDVADALILNRLFGHLFSNGVILVATSNRAPDKLYEGGLQRDLFLPFISTLKERCVTH 287

Query: 61  EIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLG 120
           EIGS+ DYRK+TSA+QGFYFVGK SS  +KQKF+ LIG+   GPQEVEVVMGR LQVPLG
Sbjct: 288 EIGSATDYRKLTSAEQGFYFVGKDSSIFLKQKFQQLIGKSIPGPQEVEVVMGRVLQVPLG 347

Query: 121 ANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYE 180
           ANGCAYF FEELCDKPLGAADYFGLFK FHTLAL+G+PIFGLHNRTAAYRFVTLVDVMYE
Sbjct: 348 ANGCAYFPFEELCDKPLGAADYFGLFKKFHTLALDGVPIFGLHNRTAAYRFVTLVDVMYE 407

Query: 181 NRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTIS 240
           N+ARLLCTAEGSP +L  KIVTISDAQQ+APRTS+RS +ND +DLCVDNELGFAKDRTIS
Sbjct: 408 NKARLLCTAEGSPQELLEKIVTISDAQQIAPRTSTRSRKNDVSDLCVDNELGFAKDRTIS 467

Query: 241 RLTEMNSKEYLEQHAAMLAAKQ 262
           RLTE+NSKEYLEQHA ++A K+
Sbjct: 468 RLTEINSKEYLEQHAELVAEKR 489

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457857|ref|XP_004146664.1| PREDICTED: lactation elevated protein 1-like [Cucumis sativus]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/262 (83%), Positives = 240/262 (91%)

Query: 1   MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVH 60
           MVTDVADALILNRLF HLF+NGVILV+TSNRAPD LYE GLQRDLFLPFISTLKERCV H
Sbjct: 223 MVTDVADALILNRLFGHLFSNGVILVATSNRAPDKLYEGGLQRDLFLPFISTLKERCVTH 282

Query: 61  EIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLG 120
           EIGS+ DYRK+TSA+QGFYFVGK SS  +KQKF+ LIG+   GPQEVEVVMGR LQVPLG
Sbjct: 283 EIGSATDYRKLTSAEQGFYFVGKDSSIFLKQKFQQLIGKSIPGPQEVEVVMGRVLQVPLG 342

Query: 121 ANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYE 180
           ANGCAYF FEELCDKPLGAADYFGLFK FHTLAL+G+PIFGLHNRTAAYRFVTLVDVMYE
Sbjct: 343 ANGCAYFPFEELCDKPLGAADYFGLFKKFHTLALDGVPIFGLHNRTAAYRFVTLVDVMYE 402

Query: 181 NRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTIS 240
           N+ARLLCTAEGSP +L  KIVTISDAQQ+APRTS+RS +ND +DLCVDNELGFAKDRTIS
Sbjct: 403 NKARLLCTAEGSPQELLEKIVTISDAQQIAPRTSTRSRKNDVSDLCVDNELGFAKDRTIS 462

Query: 241 RLTEMNSKEYLEQHAAMLAAKQ 262
           RLTE+NSKEYLEQHA ++A K+
Sbjct: 463 RLTEINSKEYLEQHAELVAEKR 484

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79325316|ref|NP_001031737.1| AFG1-like protein [Arabidopsis thaliana] gi|53850477|gb|AAU95415.1| At4g28070 [Arabidopsis thaliana] gi|56790192|gb|AAW30013.1| At4g28070 [Arabidopsis thaliana] gi|332660035|gb|AEE85435.1| AFG1-like protein [Arabidopsis thaliana]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/264 (82%), Positives = 240/264 (90%)

Query: 1   MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVH 60
           MV DVADALILNRLFRHLFNNG+ILV+TSNRAPDNLYE GLQRDLFLPFISTLKERCVV 
Sbjct: 209 MVNDVADALILNRLFRHLFNNGIILVATSNRAPDNLYEGGLQRDLFLPFISTLKERCVVR 268

Query: 61  EIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLG 120
           EIGSSVDYRK+TSA++GFYF+GK  S ++KQKF+ L+G+  AGPQ VEVVMGRKLQVPL 
Sbjct: 269 EIGSSVDYRKLTSAEEGFYFIGKDISGLLKQKFQLLVGDQPAGPQVVEVVMGRKLQVPLA 328

Query: 121 ANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYE 180
           A+GCAYF FEELCD+PLGAADY GLFK FHTLALEG+P FGLHNRTAAYRFVTLVDVMYE
Sbjct: 329 ADGCAYFLFEELCDRPLGAADYLGLFKKFHTLALEGVPFFGLHNRTAAYRFVTLVDVMYE 388

Query: 181 NRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTIS 240
           N+ARLLCTAEGSP +L  +IVTISDAQQ+APRTSSRS ++D+ DLCVDNELGFAKDRTIS
Sbjct: 389 NKARLLCTAEGSPLELLERIVTISDAQQIAPRTSSRSRKSDDPDLCVDNELGFAKDRTIS 448

Query: 241 RLTEMNSKEYLEQHAAMLAAKQLS 264
           RLTEMNSKEYLEQH+ ML  KQ S
Sbjct: 449 RLTEMNSKEYLEQHSRMLQEKQPS 472

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803274|ref|XP_002869521.1| ATPase [Arabidopsis lyrata subsp. lyrata] gi|297315357|gb|EFH45780.1| ATPase [Arabidopsis lyrata subsp. lyrata]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/264 (82%), Positives = 239/264 (90%)

Query: 1   MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVH 60
           MV DVADALILNRLFRHLFNNG+ILV+TSNRAPDNLYE GLQRDLFLPFISTLKERCVV 
Sbjct: 210 MVNDVADALILNRLFRHLFNNGIILVATSNRAPDNLYEGGLQRDLFLPFISTLKERCVVR 269

Query: 61  EIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLG 120
           EIGSSVDYRK+TSA++GFYF+GK  S ++KQKF+ L+G+  AGPQ VEVVMGRKLQVPL 
Sbjct: 270 EIGSSVDYRKLTSAEEGFYFIGKDISGLLKQKFQLLVGDQPAGPQVVEVVMGRKLQVPLA 329

Query: 121 ANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYE 180
           A+GCAYF FEELCD+PLGAADY GLFK FHTLALEG+PIFGLHNRTAAYRFVTLVDVMYE
Sbjct: 330 ADGCAYFLFEELCDRPLGAADYLGLFKKFHTLALEGVPIFGLHNRTAAYRFVTLVDVMYE 389

Query: 181 NRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTIS 240
            +ARLLCTAEG P +L  +IVTISDAQQ+APRTSSRS ++D+ DLCVDNELGFAKDRTIS
Sbjct: 390 TKARLLCTAEGGPIELLERIVTISDAQQIAPRTSSRSRKSDDPDLCVDNELGFAKDRTIS 449

Query: 241 RLTEMNSKEYLEQHAAMLAAKQLS 264
           RLTEMNSKEYLEQH+ ML  KQ S
Sbjct: 450 RLTEMNSKEYLEQHSRMLQEKQPS 473

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498791|ref|XP_003518232.1| PREDICTED: lactation elevated protein 1-like [Glycine max]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/262 (80%), Positives = 236/262 (90%)

Query: 1   MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVH 60
           MVTDVADAL+LNRLFRHLFN G+ILV+TSNRAPDNLYE GLQRDLFLPFI+ LKERCVVH
Sbjct: 230 MVTDVADALVLNRLFRHLFNKGIILVATSNRAPDNLYEGGLQRDLFLPFIAALKERCVVH 289

Query: 61  EIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLG 120
           EIGSSVDYRKM S +QGFY VG   S  +KQKF+ LIGE  A PQEVEVVMGR L VPLG
Sbjct: 290 EIGSSVDYRKMASGEQGFYLVGTDLSGFLKQKFQQLIGEGTATPQEVEVVMGRTLHVPLG 349

Query: 121 ANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYE 180
           ANGCAYF FEELC++P+GAADYFGLF+ FHTLAL+GIPIFGLHN++AA+RFVTLVDVMYE
Sbjct: 350 ANGCAYFPFEELCERPVGAADYFGLFRKFHTLALDGIPIFGLHNKSAAHRFVTLVDVMYE 409

Query: 181 NRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTIS 240
           N+ARLLCTAEGSP  LF KI+TIS+A+ MAPRTSSRS +ND+++LCVDNELGFAKDRTIS
Sbjct: 410 NKARLLCTAEGSPQDLFEKILTISEAKNMAPRTSSRSRKNDDSNLCVDNELGFAKDRTIS 469

Query: 241 RLTEMNSKEYLEQHAAMLAAKQ 262
           RLTE+NSKEYL+ HAAMLA K+
Sbjct: 470 RLTEINSKEYLQHHAAMLAEKK 491

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:2133007	473	AT4G28070 [Arabidopsis thalian	1.0	0.558	0.825	2.4e-115
TAIR|locus:2118786	497	AT4G30490 [Arabidopsis thalian	0.965	0.513	0.812	7e-109
DICTYBASE|DDB_G0292852	527	DDB_G0292852 "putative ATPase"	0.946	0.474	0.417	7.9e-46
MGI|MGI:2148801	480	Lace1 "lactation elevated 1" [	0.935	0.514	0.404	2.8e-43
UNIPROTKB|H0Y5F4	349	LACE1 "Lactation elevated prot	0.943	0.713	0.394	5.2e-42
UNIPROTKB|Q8WV93	481	LACE1 "Lactation elevated prot	0.943	0.517	0.394	5.2e-42
UNIPROTKB|E1BQ18	480	LACE1 "Uncharacterized protein	0.943	0.518	0.394	8.4e-42
UNIPROTKB|E1C0S7	493	LACE1 "Uncharacterized protein	0.939	0.503	0.385	1.4e-41
RGD|1561501	480	Lace1 "lactation elevated 1" [	0.939	0.516	0.394	1.7e-41
UNIPROTKB|F1PD84	480	LACE1 "Uncharacterized protein	0.943	0.518	0.382	2e-40

TAIR|locus:2133007 AT4G28070 [Arabidopsis thaliana (taxid:3702)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 218/264 (82%), Positives = 240/264 (90%)

Query:     1 MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVH 60
             MV DVADALILNRLFRHLFNNG+ILV+TSNRAPDNLYE GLQRDLFLPFISTLKERCVV 
Sbjct:   209 MVNDVADALILNRLFRHLFNNGIILVATSNRAPDNLYEGGLQRDLFLPFISTLKERCVVR 268

Query:    61 EIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLG 120
             EIGSSVDYRK+TSA++GFYF+GK  S ++KQKF+ L+G+  AGPQ VEVVMGRKLQVPL 
Sbjct:   269 EIGSSVDYRKLTSAEEGFYFIGKDISGLLKQKFQLLVGDQPAGPQVVEVVMGRKLQVPLA 328

Query:   121 ANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYE 180
             A+GCAYF FEELCD+PLGAADY GLFK FHTLALEG+P FGLHNRTAAYRFVTLVDVMYE
Sbjct:   329 ADGCAYFLFEELCDRPLGAADYLGLFKKFHTLALEGVPFFGLHNRTAAYRFVTLVDVMYE 388

Query:   181 NRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTIS 240
             N+ARLLCTAEGSP +L  +IVTISDAQQ+APRTSSRS ++D+ DLCVDNELGFAKDRTIS
Sbjct:   389 NKARLLCTAEGSPLELLERIVTISDAQQIAPRTSSRSRKSDDPDLCVDNELGFAKDRTIS 448

Query:   241 RLTEMNSKEYLEQHAAMLAAKQLS 264
             RLTEMNSKEYLEQH+ ML  KQ S
Sbjct:   449 RLTEMNSKEYLEQHSRMLQEKQPS 472

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=ISS

TAIR|locus:2118786 AT4G30490 [Arabidopsis thaliana (taxid:3702)]

 Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
 Identities = 208/256 (81%), Positives = 230/256 (89%)

Query:     1 MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVH 60
             MVTDVADALILNRLF HLF+NGVILV+TSNR PD LYE GLQRDLFLPFIS+LKER VVH
Sbjct:   237 MVTDVADALILNRLFGHLFSNGVILVATSNRNPDKLYEGGLQRDLFLPFISSLKERSVVH 296

Query:    61 EIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHE-AGPQEVEVVMGRKLQVPL 119
             EIGS+VDYRK+TSA+QGFYF+GK  S ++KQKFR LIG++  A PQ VEVVMGRKLQ+PL
Sbjct:   297 EIGSAVDYRKLTSAEQGFYFIGKDLSTLLKQKFRQLIGDNVVARPQVVEVVMGRKLQIPL 356

Query:   120 GANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMY 179
             GANGCAYF FEELCD+PLGAADYFGLFK FHTLAL+ IP+FGLHNRTAAYRFVTLVDVMY
Sbjct:   357 GANGCAYFPFEELCDRPLGAADYFGLFKKFHTLALDEIPVFGLHNRTAAYRFVTLVDVMY 416

Query:   180 ENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTI 239
             ENRARLLCTAE +P +L  KI+TIS+A+ M PRTSSRS +ND  +LCVDNELGFAKDRTI
Sbjct:   417 ENRARLLCTAEANPQELLEKIITISEAKSMGPRTSSRSRKNDVTELCVDNELGFAKDRTI 476

Query:   240 SRLTEMNSKEYLEQHA 255
             SRLTEMNSKEYLE HA
Sbjct:   477 SRLTEMNSKEYLEHHA 492

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=ISS

GO:0005516 "calmodulin binding" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

DICTYBASE|DDB_G0292852 DDB_G0292852 "putative ATPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 106/254 (41%), Positives = 146/254 (57%)

Query:     2 VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
             VTDV+DA+IL RLF H+F+ G ILV+TSNRAP +LY+ GL R LF+PFI  L+ +C+VH 
Sbjct:   270 VTDVSDAMILKRLFSHMFDLGAILVTTSNRAPIDLYKNGLNRQLFIPFIHFLESKCLVHN 329

Query:    62 IGSSVDYRKM-TSAQQGFYFVGKGSSEV--MKQKFRDLIGEHEAGPQEVEVVMGRKLQVP 118
             + S VDYR   T  ++ FY+    S EV    Q F  L        +++ +  GRK+  P
Sbjct:   330 LNSGVDYRLTGTRTKKVFYYPSSSSKEVADFNQLFIQLSKGEPMESKQLVLSTGRKVNCP 389

Query:   119 LGA-NGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDV 177
                 +  A F+F ELCD  LGA DY  L K FHT+ LE IP+    ++  A RF+ LVDV
Sbjct:   390 RTVLDSIALFDFYELCDNALGADDYIELSKQFHTIFLENIPLMNESSKNQARRFIILVDV 449

Query:   178 MYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDR 237
             +YE++ +L+CTA  SP QLF    + ++   +        +  ++       E  F   R
Sbjct:   450 LYEHKVKLICTAASSPAQLFMSEGSNTNTSDVLQLADDLKLTPEQLSRFTGEEERFMFSR 509

Query:   238 TISRLTEMNSKEYL 251
              +SRL EM S EYL
Sbjct:   510 AVSRLVEMQSDEYL 523

GO:0005524 "ATP binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=ISS

MGI|MGI:2148801 Lace1 "lactation elevated 1" [Mus musculus (taxid:10090)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 104/257 (40%), Positives = 151/257 (58%)

Query:     2 VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
             VTD+ADA+IL +LF +LF NGV++V+TSNR P++LY+ GLQR  F+PFI+ LKE C   +
Sbjct:   217 VTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCDTLQ 276

Query:    62 IGSSVDYRKMTSAQQG--FYFVGKGSSEVMKQKFRDLIGEHE---AGPQEVEVVMGRKLQ 116
             + S VDYRK   A  G  +Y   +   E +  K  D + + +     P+ ++V  GR+L+
Sbjct:   277 LDSGVDYRKRELAPAGKLYYLTSEADVEAVVDKLFDELAQKQNDLTSPRILKV-QGRELR 335

Query:   117 VPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVD 176
             +       A   FEELC++PLGA+DY  L K F T+ +  IP F L  RT A RF+TL+D
Sbjct:   336 LNKACGSVADCTFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKRTQARRFITLID 395

Query:   177 VMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCV---DNELGF 233
               Y+ + R++C+A      LF      S++ Q         +  D A L +   + E+ F
Sbjct:   396 NFYDFKVRIICSASAPISSLFLHQHQDSESDQSRILMDDLGLSQDSAGLSMFTGEEEI-F 454

Query:   234 AKDRTISRLTEMNSKEY 250
             A  RTISRLTEM +++Y
Sbjct:   455 AFQRTISRLTEMQTEQY 471

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|H0Y5F4 LACE1 "Lactation elevated protein 1" [Homo sapiens (taxid:9606)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 101/256 (39%), Positives = 148/256 (57%)

Query:     2 VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
             VTD+ADA+IL +LF +LF NGV++V+TSNR P++LY+ GLQR  F+PFI+ LKE C   +
Sbjct:    85 VTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQ 144

Query:    62 IGSSVDYRK--MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEV--VMGRKLQV 117
             + S +DYRK  + +A + +Y   +   E +  K  D + + +       +  V GR+L++
Sbjct:   145 LDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRL 204

Query:   118 PLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDV 177
                    A   FEELC++PLGA+DY  L K F T+ L  IP F L NRT   RF+TL+D 
Sbjct:   205 NKACGTVADCTFEELCERPLGASDYLELSKNFDTIFLRNIPQFTLANRTQGRRFITLIDN 264

Query:   178 MYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEAD---LCVDNELGFA 234
              Y+ + R++C+A      LF      S+ +Q         +  D A+   +    E  FA
Sbjct:   265 FYDLKVRIICSASTPISSLFLHQHHDSELEQSRILMDDLGLSQDSAEGLSMFTGEEEIFA 324

Query:   235 KDRTISRLTEMNSKEY 250
               RTISRLTEM +++Y
Sbjct:   325 FQRTISRLTEMQTEQY 340

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q8WV93 LACE1 "Lactation elevated protein 1" [Homo sapiens (taxid:9606)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 101/256 (39%), Positives = 148/256 (57%)

Query:     2 VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
             VTD+ADA+IL +LF +LF NGV++V+TSNR P++LY+ GLQR  F+PFI+ LKE C   +
Sbjct:   217 VTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQ 276

Query:    62 IGSSVDYRK--MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEV--VMGRKLQV 117
             + S +DYRK  + +A + +Y   +   E +  K  D + + +       +  V GR+L++
Sbjct:   277 LDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRL 336

Query:   118 PLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDV 177
                    A   FEELC++PLGA+DY  L K F T+ L  IP F L NRT   RF+TL+D 
Sbjct:   337 NKACGTVADCTFEELCERPLGASDYLELSKNFDTIFLRNIPQFTLANRTQGRRFITLIDN 396

Query:   178 MYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEAD---LCVDNELGFA 234
              Y+ + R++C+A      LF      S+ +Q         +  D A+   +    E  FA
Sbjct:   397 FYDLKVRIICSASTPISSLFLHQHHDSELEQSRILMDDLGLSQDSAEGLSMFTGEEEIFA 456

Query:   235 KDRTISRLTEMNSKEY 250
               RTISRLTEM +++Y
Sbjct:   457 FQRTISRLTEMQTEQY 472

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1BQ18 LACE1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 101/256 (39%), Positives = 148/256 (57%)

Query:     2 VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
             VTD+ADA+IL +LF +LF NGV++V+TSNR P++LY+ GLQR  F+PFI+ LKE C   +
Sbjct:   216 VTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQ 275

Query:    62 IGSSVDYRK--MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEV--VMGRKLQV 117
             + S +DYRK  + +A + +Y   +   E +  K  D + + +       +  V GR+L++
Sbjct:   276 LDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRL 335

Query:   118 PLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDV 177
                    A   FEELC++PLGA+DY  L K F T+ L  IP F L  RT A RF+TL+D 
Sbjct:   336 NKACGTVADCTFEELCERPLGASDYLELSKNFDTVFLRNIPQFTLAKRTQARRFITLIDN 395

Query:   178 MYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEAD---LCVDNELGFA 234
              Y+ + R++C+A      LF      S+ +Q         +  D A+   +    E  FA
Sbjct:   396 FYDFKVRIICSASAPVSSLFLCDHHDSELEQSRILMDDLGLSQDSAEGLAMFTGEEEIFA 455

Query:   235 KDRTISRLTEMNSKEY 250
               RTISRLTEM +++Y
Sbjct:   456 FQRTISRLTEMQTEQY 471

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1C0S7 LACE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 99/257 (38%), Positives = 149/257 (57%)

Query:     2 VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
             VTD+ADA+IL +LF +LF NGV++V+TSNR P++LY+ GLQR  F+PFI+ LK+ C   +
Sbjct:   227 VTDIADAMILKQLFENLFQNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKKYCSTVQ 286

Query:    62 IGSSVDYRK--MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEV--VMGRKLQV 117
             + S +DYRK  + +A + +Y   +   E +  K  D + + +       +  V GR+L++
Sbjct:   287 LDSGIDYRKRVLPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRL 346

Query:   118 PLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDV 177
                    A F FEELCD+PLGA+DY  + K F T+ +  IP   +  RT A RF+TL+D 
Sbjct:   347 NKACGTIADFTFEELCDRPLGASDYLEISKHFDTVFVRDIPPLTMAKRTQARRFITLIDT 406

Query:   178 MYENRARLLCTAEGSPFQ-LFNKIVTISDAQQMAPRTSSRSMRNDEA---DLCVDNELGF 233
              YE++ R++C+A  +P Q LF       + +          +  D A    +    E  F
Sbjct:   407 FYEHKVRIICSA-ATPLQSLFVVEAGSIELEDSRVLMDDLDLSQDSAKGLSMFTGEEEIF 465

Query:   234 AKDRTISRLTEMNSKEY 250
             A  RTISRLTEM +++Y
Sbjct:   466 AFQRTISRLTEMQTEQY 482

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1561501 Lace1 "lactation elevated 1" [Rattus norvegicus (taxid:10116)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 101/256 (39%), Positives = 151/256 (58%)

Query:     2 VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
             VTD+ADA+IL +LF +LF NGV++V+TSNR P++LY+ GLQR  F+PFI+ LKE C   +
Sbjct:   217 VTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQ 276

Query:    62 IGSSVDYRK--MTSAQQGFYFVGKGS-SEVMKQKFRDLIG-EHEAGPQEVEVVMGRKLQV 117
             + S VDYRK  +T A + +Y   +     VM + F +L   +++     +  V GR+L++
Sbjct:   277 LDSGVDYRKRELTPAGKLYYLTSEADVGTVMDKLFDELAQKQNDLTSPRILKVQGRELRL 336

Query:   118 PLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDV 177
                    A   FEELC++PLGA+DY  L K F T+ +  IP F L  RT   RF+TL+D 
Sbjct:   337 NKACGTVADCTFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKRTQVRRFITLIDN 396

Query:   178 MYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCV---DNELGFA 234
              Y+ + R++C+A      LF      S++ Q         +  D A L +   + E+ F+
Sbjct:   397 FYDFKVRIICSASVPISSLFVYQHQDSESDQSRVLMDDLGLSQDSAGLSMFTGEEEI-FS 455

Query:   235 KDRTISRLTEMNSKEY 250
               RT+SRLTEM +++Y
Sbjct:   456 FQRTLSRLTEMQTEQY 471

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

UNIPROTKB|F1PD84 LACE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 98/256 (38%), Positives = 147/256 (57%)

Query:     2 VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
             VTD+ADA+IL +LF +LF NGV++V+TSNR P++LY+ GLQR  F+PFI+ LK+ C   +
Sbjct:   216 VTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKKYCNTVQ 275

Query:    62 IGSSVDYRK--MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEV--VMGRKLQV 117
             + S +DYRK  + +A + +Y   +   E +  K  D + + +       +  V GR+L++
Sbjct:   276 LDSGIDYRKRDLPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRL 335

Query:   118 PLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDV 177
                    A   FEELC++PLGA+DY  L K F T+ L  IP F L  RT A RF+TL+D 
Sbjct:   336 NKACGTVADCTFEELCERPLGASDYLELSKNFDTVFLRNIPQFTLAKRTQARRFITLIDN 395

Query:   178 MYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEAD---LCVDNELGFA 234
              Y+ + R++C+A      LF      S+ +          +  D A+   +    E  FA
Sbjct:   396 FYDFKVRVICSASTPIASLFLHQHHDSELEHSRILMDDLGLSQDSAEGLSMFTGEEEIFA 455

Query:   235 KDRTISRLTEMNSKEY 250
               RT+SRLTEM +++Y
Sbjct:   456 FQRTLSRLTEMQTEQY 471

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017116001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (502 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020593001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (276 aa)	•		•						0.600
	GSVIVG00024946001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (528 aa)	•		•						0.594
	GSVIVG00018534001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (973 aa)	•								0.544
	GSVIVG00004046001	SubName- Full=Chromosome undetermined scaffold_588, whole genome shotgun sequence; (302 aa)	•		•						0.531

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
COG1485	367	COG1485, COG1485, Predicted ATPase [General functi	6e-73
pfam03969	361	pfam03969, AFG1_ATPase, AFG1-like ATPase	8e-56

>gnl|CDD|224402 COG1485, COG1485, Predicted ATPase [General function prediction only]

 Score =  226 bits (579), Expect = 6e-73
 Identities = 88/254 (34%), Positives = 126/254 (49%), Gaps = 32/254 (12%)

Query: 2   VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
           VTD+ADA+IL RL   LF  GV+LV+TSN APDNLY+ GLQR+ FLP I  +K    V  
Sbjct: 141 VTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVN 200

Query: 62  IGSSVDYR--KMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPL 119
           +   VDYR  K+  A      +   +   + + +  L          +E + GR+++VP 
Sbjct: 201 VDGPVDYRLRKLEQAPVYLTPLDAEAEAALDKLWAALSDGAPEAAANLE-IKGREIRVPA 259

Query: 120 GANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMY 179
            A G  +F+F +LC+ P  A+DY  L + FHT+ L  +P     +R  A RF+ LVD +Y
Sbjct: 260 VAGGLLWFDFAQLCEAPRSASDYLALAERFHTVFLTDVPQMDPLDRDEARRFIALVDELY 319

Query: 180 ENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTI 239
           +   +L+ +AE    +L+                                 L F   RT+
Sbjct: 320 DRGVKLVASAEVPLNELY-----------------------------QGGRLAFEFQRTL 350

Query: 240 SRLTEMNSKEYLEQ 253
           SRL EM S+EYL  
Sbjct: 351 SRLQEMQSEEYLGI 364

Length = 367

>gnl|CDD|217821 pfam03969, AFG1_ATPase, AFG1-like ATPase

 Score =  182 bits (464), Expect = 8e-56
 Identities = 78/253 (30%), Positives = 109/253 (43%), Gaps = 32/253 (12%)

Query: 2   VTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHE 61
           V D+ DA+IL RLF  LF  GV LV+TSN AP+ LY  GL R  FLP I  L+    V  
Sbjct: 137 VDDIGDAMILGRLFEALFARGVSLVATSNTAPEQLYRNGLNRQRFLPAIDLLESHFEVVR 196

Query: 62  IGSSVDYR--KMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPL 119
           +   VDYR   +  A    Y +   +   + + +  L    E  P     V  R  +   
Sbjct: 197 VDGPVDYRLRTLEQAPLWLYPLDGAAWAALDRLWDALTLG-EPQPLSTLEVAARLARARA 255

Query: 120 GANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMY 179
                 +F F +LC  P   +DY  L + F T+ L  +P     ++  A RF+ LVD +Y
Sbjct: 256 AGGDLVWFSFADLCLAPRHPSDYLALAERFSTVFLTDVPPMTRCSQDEARRFIALVDELY 315

Query: 180 ENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTI 239
           +   +L+ +AE +                               DL     L F   RT+
Sbjct: 316 DRHVKLVASAE-AALD----------------------------DLYRGGRLAFEFQRTL 346

Query: 240 SRLTEMNSKEYLE 252
           SRL EM S++YL 
Sbjct: 347 SRLLEMQSEDYLA 359

This family of proteins contains a P-loop motif and are predicted to be ATPases. Length = 361

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
KOG2383	467	consensus Predicted ATPase [General function predi	100.0
COG1485	367	Predicted ATPase [General function prediction only	100.0
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	100.0
PRK08116	268	hypothetical protein; Validated	96.68
PRK06921	266	hypothetical protein; Provisional	94.83
PRK08116	268	hypothetical protein; Validated	94.38
PRK08181	269	transposase; Validated	94.27
PRK09183	259	transposase/IS protein; Provisional	94.21
PRK06835	329	DNA replication protein DnaC; Validated	94.05
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	93.62
PRK08181	269	transposase; Validated	93.45
PRK07952	244	DNA replication protein DnaC; Validated	93.35
PRK06526	254	transposase; Provisional	93.26
PRK05642	234	DNA replication initiation factor; Validated	92.95
PRK08939	306	primosomal protein DnaI; Reviewed	92.76
PRK12377	248	putative replication protein; Provisional	92.27
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	91.15
PRK08727	233	hypothetical protein; Validated	90.84
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	90.34
PRK06526	254	transposase; Provisional	87.87
PRK09183	259	transposase/IS protein; Provisional	86.42
PRK06835	329	DNA replication protein DnaC; Validated	86.08
PRK14086	617	dnaA chromosomal replication initiation protein; P	85.5
PRK08084	235	DNA replication initiation factor; Provisional	85.38
PRK12377	248	putative replication protein; Provisional	84.25
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	83.95
PRK08727	233	hypothetical protein; Validated	83.87
COG1484	254	DnaC DNA replication protein [DNA replication, rec	83.17
PRK08939	306	primosomal protein DnaI; Reviewed	82.36
COG1485	367	Predicted ATPase [General function prediction only	82.05
PRK06921	266	hypothetical protein; Provisional	81.26

>KOG2383 consensus Predicted ATPase [General function prediction only]

Probab=100.00  E-value=4.4e-84  Score=605.40  Aligned_cols=253  Identities=49%  Similarity=0.816  Sum_probs=227.3

Q ss_pred             CCCChhhHHHHHHHHHHHHHCCCEEEEcCCCCchhhccCCCcccchhhHHHHHHhccEEEEeCCCCCcCCC-CccCccee
Q 024706            1 MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKM-TSAQQGFY   79 (264)
Q Consensus         1 ~V~DIaDAmiL~rLf~~Lf~~GvvlVaTSN~~P~dLy~ngl~r~~FlPfI~~L~~~~~V~~ld~~~DYR~~-~~~~~~~~   79 (264)
                      |||||||||||+|||++||+.||||||||||+|+|||+|||||+.|+|||.+|+++|.|+.|||++|||+. .+...++|
T Consensus       203 QVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P~dLYknGlQR~~F~PfI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~y  282 (467)
T KOG2383|consen  203 QVTDVADAMILKRLFEHLFKNGVVLVATSNRAPEDLYKNGLQRENFIPFIALLEERCKVIQLDSGVDYRRKAKSAGENYY  282 (467)
T ss_pred             hhhhHHHHHHHHHHHHHHHhCCeEEEEeCCCChHHHhhcchhhhhhhhHHHHHHHhheEEecCCccchhhccCCCCceeE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999954 34566788


Q ss_pred             eCCc-ChHHHHHHHHHHHhCCC-CCCCCceeEEcCeeeeeeecCCCeEEeeHHHHhcCCCCcccHHHHhcccCeEEEcCC
Q 024706           80 FVGK-GSSEVMKQKFRDLIGEH-EAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGI  157 (264)
Q Consensus        80 ~~~~-~~~~~l~~~f~~~~~~~-~~~~~~~~v~~gR~l~v~~~~~~va~f~F~eLC~~p~~~~DYl~La~~f~ti~i~~V  157 (264)
                      +.++ +.+..|+++|+.+.+.+ ...++.+.+++||++.||+++++||||+|+|||++|+||+|||.||++||||+|+||
T Consensus       283 f~~~~d~~~~l~~~fk~~~~dq~d~~~~~~l~v~GR~l~vpk~cg~VA~ftFeeLC~rPlgAaDYL~lak~fhti~v~dI  362 (467)
T KOG2383|consen  283 FISETDVETVLKEWFKLLAADQNDGTRQRTLVVFGRKLIVPKACGGVADFTFEELCGRPLGAADYLGLAKNFHTIIVRDI  362 (467)
T ss_pred             ecChhhHHHHHHHHHHHHhccCCCCCCCcceeeecceEEecccCCCcccccHHHHhCCccchHHHHHHHhhcceeEeecc
Confidence            8877 88889999998877655 333555566799999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhhccccccchhhhhcccccccccc--cccccc---cccCcccc
Q 024706          158 PIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSM--RNDEAD---LCVDNELG  232 (264)
Q Consensus       158 P~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~e~~  232 (264)
                      |+|+.+++|++||||||||+|||++++|++||++|+++||..... +++....+|+++...  +.+.++   +|+|+||.
T Consensus       363 P~lsl~~r~~~rRFITliD~lYd~~~rlv~sa~~p~~~Lf~~~~~-~e~ls~s~r~~mddl~iks~~~~~~~mf~g~EE~  441 (467)
T KOG2383|consen  363 PQLSLENRDQARRFITLIDALYDNHVRLVCSAATPLEELFQFTGH-SEALSDSPRTLMDDLGIKSDSAGGSPMFSGEEEG  441 (467)
T ss_pred             chhhhHHHHHHhhHhHHHHHHhhccceEEecCCCCHHHHhcccCc-ccccccCcccchhhhcccccCccccccccchHHH
Confidence            999999999999999999999999999999999999999985432 455666667666554  455555   89999999


Q ss_pred             cccccccchHhhhCchhHHHHH
Q 024706          233 FAKDRTISRLTEMNSKEYLEQH  254 (264)
Q Consensus       233 Faf~Rt~SRL~EMqs~~y~~~~  254 (264)
                      |||+||+|||+|||+..||+.+
T Consensus       442 FAf~RtlSRL~eMqt~~y~~~~  463 (467)
T KOG2383|consen  442 FAFDRTLSRLYEMQTELYWEQP  463 (467)
T ss_pred             HHHHHHHHHHHHhhcchhcccc
Confidence            9999999999999999999753

>COG1485 Predicted ATPase [General function prediction only]

Probab=100.00  E-value=4.7e-78  Score=559.06  Aligned_cols=223  Identities=39%  Similarity=0.668  Sum_probs=211.6

Q ss_pred             CCCChhhHHHHHHHHHHHHHCCCEEEEcCCCCchhhccCCCcccchhhHHHHHHhccEEEEeCCCCCcCCCCccCcceee
Q 024706            1 MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKMTSAQQGFYF   80 (264)
Q Consensus         1 ~V~DIaDAmiL~rLf~~Lf~~GvvlVaTSN~~P~dLy~ngl~r~~FlPfI~~L~~~~~V~~ld~~~DYR~~~~~~~~~~~   80 (264)
                      +|+||||||||+|||++||++||+||||||++|++||+|||||++|||||++||++|+|+++||++|||++...+...|+
T Consensus       140 ~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~~DYR~r~l~~a~~y~  219 (367)
T COG1485         140 EVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGPVDYRLRKLEQAPVYL  219 (367)
T ss_pred             eecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecCCccccccccccCceee
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999887777776


Q ss_pred             --CCcChHHHHHHHHHHHhCCCCCCCCceeEEcCeeeeeeecCCCeEEeeHHHHhcCCCCcccHHHHhcccCeEEEcCCC
Q 024706           81 --VGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIP  158 (264)
Q Consensus        81 --~~~~~~~~l~~~f~~~~~~~~~~~~~~~v~~gR~l~v~~~~~~va~f~F~eLC~~p~~~~DYl~La~~f~ti~i~~VP  158 (264)
                        ++..+...|+++|..++++....+..+. +.||+|.+|+.+++++||+|.+||+.|+|+.|||+||++||||+|+|||
T Consensus       220 ~Pl~~~~~~~l~~~~~~ls~~~~~~~~~l~-i~gR~i~~~~~~~~~~~f~f~~Lc~~p~s~~DYl~l~~~f~tv~l~~vp  298 (367)
T COG1485         220 TPLDAEAEAALDKLWAALSDGAPEAAANLE-IKGREIRVPAVAGGLLWFDFAQLCEAPRSASDYLALAERFHTVFLTDVP  298 (367)
T ss_pred             cCCcHHHHHHHHHHHHHhccCCccCCchhh-ccCceeecccccCcchhccHHHHhhCcCCHHHHHHHHhhccEEEEcCCC
Confidence              4677788999999999987666777776 4899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhhccccccchhhhhcccccccccccccccccccCcccccccccc
Q 024706          159 IFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRT  238 (264)
Q Consensus       159 ~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~Faf~Rt  238 (264)
                      +|+..++|+|||||+|||+|||+++||++||++||++||.                             |+..+|+|+||
T Consensus       299 ~m~~~~~~~arRFI~lVD~lYD~~vkL~~Sae~~~~~Ly~-----------------------------~~~~afeF~Rt  349 (367)
T COG1485         299 QMDPLDRDEARRFIALVDELYDRGVKLVASAEVPLNELYQ-----------------------------GGRLAFEFQRT  349 (367)
T ss_pred             CCChhhhHHHHHHHHHHHHHHhcCCcEEEEccCCHHHhcc-----------------------------CchhhhHHHHH
Confidence            9999999999999999999999999999999999999997                             67789999999


Q ss_pred             cchHhhhCchhHHHH
Q 024706          239 ISRLTEMNSKEYLEQ  253 (264)
Q Consensus       239 ~SRL~EMqs~~y~~~  253 (264)
                      +|||.||||++|+..
T Consensus       350 ~SRL~EMqS~~yl~~  364 (367)
T COG1485         350 LSRLQEMQSEEYLGI  364 (367)
T ss_pred             HHHHHHHHHHHhhcc
Confidence            999999999999974

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=100.00  E-value=3e-77  Score=563.88  Aligned_cols=223  Identities=45%  Similarity=0.851  Sum_probs=208.5

Q ss_pred             CCCChhhHHHHHHHHHHHHHCCCEEEEcCCCCchhhccCCCcccchhhHHHHHHhccEEEEeCCCCCcCCCCccCcceee
Q 024706            1 MVTDVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKMTSAQQGFYF   80 (264)
Q Consensus         1 ~V~DIaDAmiL~rLf~~Lf~~GvvlVaTSN~~P~dLy~ngl~r~~FlPfI~~L~~~~~V~~ld~~~DYR~~~~~~~~~~~   80 (264)
                      ||+||||||||+|||++||++|||||+|||++|+|||+|||||++|+|||++|+++|+|++|||++|||+........|+
T Consensus       137 ~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~~DyR~~~~~~~~~~~  216 (362)
T PF03969_consen  137 QVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGGVDYRRRGAPPAPVYF  216 (362)
T ss_pred             eccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCCCchhhhccccccccc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999998776666555


Q ss_pred             --CCcChHHHHHHHHHHHhCCCCCCCCceeEEcCeeeeeeecCCCeEEeeHHHHhcCCCCcccHHHHhcccCeEEEcCCC
Q 024706           81 --VGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIP  158 (264)
Q Consensus        81 --~~~~~~~~l~~~f~~~~~~~~~~~~~~~v~~gR~l~v~~~~~~va~f~F~eLC~~p~~~~DYl~La~~f~ti~i~~VP  158 (264)
                        .+..+.+.++++|..+.+.....+.++. +.||+|.+|+++++++||+|+|||++|+|++||++||++|+||+|+|||
T Consensus       217 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-v~gR~i~v~~~~~~va~F~F~eLC~~plg~aDYlaLA~~F~ti~I~~VP  295 (362)
T PF03969_consen  217 YPLDEEADAALERLFQRLTGGEPEEPRTLE-VGGREIPVPRACGGVAWFDFDELCERPLGAADYLALAERFHTIFISDVP  295 (362)
T ss_pred             CcchHHHHHHHHHHHHHhccccCCCCceeE-EeeeEEeeecccCCEEEecHHHhhccCCCHHHHHHHHHhCCEEEEcCCC
Confidence              4566778899999999886666666676 5899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhhccccccchhhhhcccccccccccccccccccCcccccccccc
Q 024706          159 IFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRT  238 (264)
Q Consensus       159 ~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~Faf~Rt  238 (264)
                      +|+..++|+|||||+|||+|||++|+|+|+|++||++||.                             ++...|+|+||
T Consensus       296 ~l~~~~~n~arRFI~LID~LYd~~v~L~~sa~~~~~~L~~-----------------------------~~~~~~~f~RT  346 (362)
T PF03969_consen  296 VLSESDRNEARRFITLIDVLYDRKVKLIISAAAPPDELFQ-----------------------------GGRLAFEFQRT  346 (362)
T ss_pred             CcccCChhHHHHHHHHHHHHhhCCCcEEEEcCCCHHHHHh-----------------------------CCCchhhhhHH
Confidence            9999999999999999999999999999999999999997                             45668999999


Q ss_pred             cchHhhhCchhHHHH
Q 024706          239 ISRLTEMNSKEYLEQ  253 (264)
Q Consensus       239 ~SRL~EMqs~~y~~~  253 (264)
                      +|||.||||++|+++
T Consensus       347 ~SRL~Em~~~~y~~~  361 (362)
T PF03969_consen  347 ASRLSEMQSEEYLAR  361 (362)
T ss_pred             HHHHHHHhhHHHHhc
Confidence            999999999999964

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>PRK08116 hypothetical protein; Validated

Probab=96.68  E-value=0.0035  Score=57.31  Aligned_cols=76  Identities=14%  Similarity=0.103  Sum_probs=57.0

Q ss_pred             CCeEEeeHHHHhcCC---------CCcccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCC
Q 024706          122 NGCAYFEFEELCDKP---------LGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGS  192 (264)
Q Consensus       122 ~~va~f~F~eLC~~p---------~~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~  192 (264)
                      ..+++.++.+|...-         .+..+++....+.+.++|+|+-.-.. .......+..+||..|+.+.++++++..+
T Consensus       143 ~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~-t~~~~~~l~~iin~r~~~~~~~IiTsN~~  221 (268)
T PRK08116        143 VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERD-TEWAREKVYNIIDSRYRKGLPTIVTTNLS  221 (268)
T ss_pred             CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCC-CHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            346788888887542         23346777778899999999943322 22344567899999999999999999999


Q ss_pred             hhhhcc
Q 024706          193 PFQLFN  198 (264)
Q Consensus       193 ~~~Lf~  198 (264)
                      |++|-.
T Consensus       222 ~~eL~~  227 (268)
T PRK08116        222 LEELKN  227 (268)
T ss_pred             HHHHHH
Confidence            998864

>PRK06921 hypothetical protein; Provisional

Probab=94.83  E-value=0.051  Score=49.71  Aligned_cols=76  Identities=16%  Similarity=0.177  Sum_probs=53.2

Q ss_pred             CCeEEeeHHHHhcCCCC----cccHHHHhcccCeEEEcCCCCC---CCCC--hhHHHHHHHHHHHHHhcCCeEEEEecCC
Q 024706          122 NGCAYFEFEELCDKPLG----AADYFGLFKIFHTLALEGIPIF---GLHN--RTAAYRFVTLVDVMYENRARLLCTAEGS  192 (264)
Q Consensus       122 ~~va~f~F~eLC~~p~~----~~DYl~La~~f~ti~i~~VP~l---~~~~--~~~arRFI~LID~lYd~~vkL~~sa~~~  192 (264)
                      ..|+++++.+|...-..    ..+.+.-....+.++|+|+ .+   +...  .....-|-.+||.-|+++.++++++..+
T Consensus       147 ~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl-~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~  225 (266)
T PRK06921        147 VPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDL-FKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT  225 (266)
T ss_pred             ceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc-ccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            35678887776553111    1234455667899999999 33   2222  2233458899999999999999999999


Q ss_pred             hhhhcc
Q 024706          193 PFQLFN  198 (264)
Q Consensus       193 ~~~Lf~  198 (264)
                      |++|..
T Consensus       226 ~~el~~  231 (266)
T PRK06921        226 IDELLD  231 (266)
T ss_pred             HHHHhh
Confidence            999885

>PRK08116 hypothetical protein; Validated

Probab=94.38  E-value=0.077  Score=48.52  Aligned_cols=56  Identities=18%  Similarity=0.276  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHCCCEEEEcCCCCchhhccCCCcccchhhHHHHHHhccEEEEeCCCCCcCCCC
Q 024706           11 LNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKMT   72 (264)
Q Consensus        11 L~rLf~~Lf~~GvvlVaTSN~~P~dLy~ngl~r~~FlPfI~~L~~~~~V~~ld~~~DYR~~~   72 (264)
                      |-.++......|..+|.|||.+|++|-.. +.    ...++.|.+.|.++++.+ .|||...
T Consensus       200 l~~iin~r~~~~~~~IiTsN~~~~eL~~~-~~----~ri~sRl~e~~~~v~~~g-~d~R~~~  255 (268)
T PRK08116        200 VYNIIDSRYRKGLPTIVTTNLSLEELKNQ-YG----KRIYDRILEMCTPVENEG-KSYRKEI  255 (268)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHHHHH-Hh----HHHHHHHHHcCEEEEeeC-cChhHHH
Confidence            44567777778999999999999998642 11    556788888999999986 9999854

>PRK08181 transposase; Validated

Probab=94.27  E-value=0.059  Score=49.56  Aligned_cols=64  Identities=14%  Similarity=0.220  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHHHHCCCEEEEcCCCCchhhccCCCcccchhh-HHHHHHhccEEEEeCCCCCcCCCCc
Q 024706            7 DALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLP-FISTLKERCVVHEIGSSVDYRKMTS   73 (264)
Q Consensus         7 DAmiL~rLf~~Lf~~GvvlVaTSN~~P~dLy~ngl~r~~FlP-fI~~L~~~~~V~~ld~~~DYR~~~~   73 (264)
                      .+.+|-.|+....+++ -+|.|||.+|.+++. -+.-...-. .++.|-.+|.+++++| .|||+...
T Consensus       185 ~~~~Lf~lin~R~~~~-s~IiTSN~~~~~w~~-~~~D~~~a~aildRL~h~~~~i~~~g-~s~R~~~~  249 (269)
T PRK08181        185 ETSVLFELISARYERR-SILITANQPFGEWNR-VFPDPAMTLAAVDRLVHHATIFEMNV-ESYRRRTA  249 (269)
T ss_pred             HHHHHHHHHHHHHhCC-CEEEEcCCCHHHHHH-hcCCccchhhHHHhhhcCceEEecCC-ccchhHHH
Confidence            4567777888777764 789999999999986 222222323 4588999999999996 99998643

>PRK09183 transposase/IS protein; Provisional

Probab=94.21  E-value=0.13  Score=46.74  Aligned_cols=64  Identities=16%  Similarity=0.225  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHHHCCCEEEEcCCCCchhhccCCC-cccch-hhHHHHHHhccEEEEeCCCCCcCCCCc
Q 024706            7 DALILNRLFRHLFNNGVILVSTSNRAPDNLYERGL-QRDLF-LPFISTLKERCVVHEIGSSVDYRKMTS   73 (264)
Q Consensus         7 DAmiL~rLf~~Lf~~GvvlVaTSN~~P~dLy~ngl-~r~~F-lPfI~~L~~~~~V~~ld~~~DYR~~~~   73 (264)
                      .+-+|-.++....++|. +|.|||.+|.+++.- + .-... -.-++.|..+|.+++++| .|||....
T Consensus       182 ~~~~lf~li~~r~~~~s-~iiTsn~~~~~w~~~-~~~d~~~~~ai~dRl~~~~~~i~~~g-~s~R~~~~  247 (259)
T PRK09183        182 EANLFFQVIAKRYEKGS-MILTSNLPFGQWDQT-FAGDAALTSAMLDRLLHHSHVVQIKG-ESYRLKQK  247 (259)
T ss_pred             HHHHHHHHHHHHHhcCc-EEEecCCCHHHHHHH-hcCchhHHHHHHHHHhcceEEEeecC-CCCccccc
Confidence            34456667776667775 788999999999874 2 12222 235688999999999996 99998654

>PRK06835 DNA replication protein DnaC; Validated

Probab=94.05  E-value=0.095  Score=49.52  Aligned_cols=76  Identities=11%  Similarity=0.132  Sum_probs=56.5

Q ss_pred             CCeEEeeHHHHhcCCCC--------cccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCCh
Q 024706          122 NGCAYFEFEELCDKPLG--------AADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSP  193 (264)
Q Consensus       122 ~~va~f~F~eLC~~p~~--------~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~  193 (264)
                      ..|.+++..+|......        ..+.+....+++.++|+|+-... .+.....-|-.+|+..|+++.++++++..+|
T Consensus       212 ~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~-~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~  290 (329)
T PRK06835        212 KSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK-ITEFSKSELFNLINKRLLRQKKMIISTNLSL  290 (329)
T ss_pred             CeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC-CCHHHHHHHHHHHHHHHHCCCCEEEECCCCH
Confidence            45788888888664211        11125666789999999995542 2334556788999999999999999999999


Q ss_pred             hhhcc
Q 024706          194 FQLFN  198 (264)
Q Consensus       194 ~~Lf~  198 (264)
                      ++|-.
T Consensus       291 ~el~~  295 (329)
T PRK06835        291 EELLK  295 (329)
T ss_pred             HHHHH
Confidence            99864

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=93.62  E-value=0.2  Score=44.40  Aligned_cols=74  Identities=15%  Similarity=0.247  Sum_probs=56.9

Q ss_pred             CeEEeeHHHHhcC------CCCcccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhh
Q 024706          123 GCAYFEFEELCDK------PLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL  196 (264)
Q Consensus       123 ~va~f~F~eLC~~------p~~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~L  196 (264)
                      .|.+++-++++..      .-...+|+.--+.++.++|+||-.+... .....-|..++|.+++++.+++++++.+|.+|
T Consensus        66 ~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~-~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l  144 (219)
T PF00308_consen   66 RVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGK-QRTQEELFHLFNRLIESGKQLILTSDRPPSEL  144 (219)
T ss_dssp             -EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTH-HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred             cceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCc-hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence            4667776665532      2445678777889999999999888532 33468899999999999999999999999987


Q ss_pred             c
Q 024706          197 F  197 (264)
Q Consensus       197 f  197 (264)
                      =
T Consensus       145 ~  145 (219)
T PF00308_consen  145 S  145 (219)
T ss_dssp             T
T ss_pred             c
Confidence            5

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK08181 transposase; Validated

Probab=93.45  E-value=0.29  Score=44.99  Aligned_cols=75  Identities=16%  Similarity=0.175  Sum_probs=57.8

Q ss_pred             CCeEEeeHHHHhcCC------CCcccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhh
Q 024706          122 NGCAYFEFEELCDKP------LGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQ  195 (264)
Q Consensus       122 ~~va~f~F~eLC~~p------~~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~  195 (264)
                      ..|.+++..+|+..-      .+....+.-..+.+.++|+|+-.... +...+.-+..+|+..|+. ..+++++..|+.+
T Consensus       135 ~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~-~~~~~~~Lf~lin~R~~~-~s~IiTSN~~~~~  212 (269)
T PRK08181        135 WRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK-DQAETSVLFELISARYER-RSILITANQPFGE  212 (269)
T ss_pred             CceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccC-CHHHHHHHHHHHHHHHhC-CCEEEEcCCCHHH
Confidence            357788888888742      22334556667899999999966544 455677899999999997 5999999999999


Q ss_pred             hcc
Q 024706          196 LFN  198 (264)
Q Consensus       196 Lf~  198 (264)
                      +..
T Consensus       213 w~~  215 (269)
T PRK08181        213 WNR  215 (269)
T ss_pred             HHH
Confidence            885

>PRK07952 DNA replication protein DnaC; Validated

Probab=93.35  E-value=0.4  Score=43.49  Aligned_cols=75  Identities=7%  Similarity=0.045  Sum_probs=56.5

Q ss_pred             CeEEeeHHHHhcC--------CCCcccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChh
Q 024706          123 GCAYFEFEELCDK--------PLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPF  194 (264)
Q Consensus       123 ~va~f~F~eLC~~--------p~~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~  194 (264)
                      .|+..+..+|...        ..+..+.+.-..+++.++|+|+.... ....+..-|-.+||.=|+++...++++..+++
T Consensus       129 ~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~  207 (244)
T PRK07952        129 SVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNME  207 (244)
T ss_pred             eEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHH
Confidence            4566677777642        22334566666789999999998865 33345566777999999999999999999999


Q ss_pred             hhcc
Q 024706          195 QLFN  198 (264)
Q Consensus       195 ~Lf~  198 (264)
                      +|..
T Consensus       208 ~l~~  211 (244)
T PRK07952        208 EMTK  211 (244)
T ss_pred             HHHH
Confidence            9875

>PRK06526 transposase; Provisional

Probab=93.26  E-value=0.22  Score=45.31  Aligned_cols=62  Identities=19%  Similarity=0.220  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHCCCEEEEcCCCCchhhccCCCcccch-hhHHHHHHhccEEEEeCCCCCcCCCCc
Q 024706            9 LILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLF-LPFISTLKERCVVHEIGSSVDYRKMTS   73 (264)
Q Consensus         9 miL~rLf~~Lf~~GvvlVaTSN~~P~dLy~ngl~r~~F-lPfI~~L~~~~~V~~ld~~~DYR~~~~   73 (264)
                      -+|-.++..-.+++ .+|.|||.+|.+++. .+.-... -.-++.|-.+|.+++++| .|||....
T Consensus       179 ~~L~~li~~r~~~~-s~IitSn~~~~~w~~-~~~d~~~a~ai~dRl~~~~~~i~~~g-~s~R~~~~  241 (254)
T PRK06526        179 NLFFQLVSSRYERA-SLIVTSNKPFGRWGE-VFGDDVVAAAMIDRLVHHAEVISLKG-DSYRLKDR  241 (254)
T ss_pred             HHHHHHHHHHHhcC-CEEEEcCCCHHHHHH-HcCChHHHHHHHHHHhcCceEEeecC-CCcchhhh
Confidence            35666776666776 488899999999875 2222111 134689999999999996 99998643

>PRK05642 DNA replication initiation factor; Validated

Probab=92.95  E-value=0.37  Score=42.95  Aligned_cols=73  Identities=18%  Similarity=0.300  Sum_probs=56.4

Q ss_pred             CCeEEeeHHHHhcCCCCcccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhhcc
Q 024706          122 NGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFN  198 (264)
Q Consensus       122 ~~va~f~F~eLC~~p~~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~Lf~  198 (264)
                      .++.+++.+++...   ..+.+.-.+.++.++|+||-.+..... ...-|-++++.+|+++..+++++..+|.++-.
T Consensus        74 ~~v~y~~~~~~~~~---~~~~~~~~~~~d~LiiDDi~~~~~~~~-~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~  146 (234)
T PRK05642         74 EPAVYLPLAELLDR---GPELLDNLEQYELVCLDDLDVIAGKAD-WEEALFHLFNRLRDSGRRLLLAASKSPRELPI  146 (234)
T ss_pred             CcEEEeeHHHHHhh---hHHHHHhhhhCCEEEEechhhhcCChH-HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCc
Confidence            35678888888753   245666667789999999987754433 34569999999999999999999998887753

>PRK08939 primosomal protein DnaI; Reviewed

Probab=92.76  E-value=0.34  Score=45.28  Aligned_cols=61  Identities=13%  Similarity=0.055  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHCCCEEEEcCCCCchhhccC------C-CcccchhhHHHHHHhccEEEEeCCCCCcCC
Q 024706            9 LILNRLFRHLFNNGVILVSTSNRAPDNLYER------G-LQRDLFLPFISTLKERCVVHEIGSSVDYRK   70 (264)
Q Consensus         9 miL~rLf~~Lf~~GvvlVaTSN~~P~dLy~n------g-l~r~~FlPfI~~L~~~~~V~~ld~~~DYR~   70 (264)
                      .+|..+++.=...+...|.|||.+|++|...      | .....=-..++.|..+|.++++.| .|||.
T Consensus       238 ~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~~~~~g~~e~~~a~ri~dRI~~~~~~i~l~G-~s~R~  305 (306)
T PRK08939        238 EVLGVILQYRMQEELPTFFTSNFDFDELEHHLAYTQRGEDETWKAARIMERIRYLAKEVHLEG-KNRRN  305 (306)
T ss_pred             HHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHhhhccCcchhhHHHHHHHHHHHhcEEEEeec-CCCCC
Confidence            4566666665667899999999999999862      1 111112347789999999999988 99995

>PRK12377 putative replication protein; Provisional

Probab=92.27  E-value=0.48  Score=43.04  Aligned_cols=75  Identities=7%  Similarity=0.035  Sum_probs=58.7

Q ss_pred             CeEEeeHHHHhcCC-------CCcccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhh
Q 024706          123 GCAYFEFEELCDKP-------LGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQ  195 (264)
Q Consensus       123 ~va~f~F~eLC~~p-------~~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~  195 (264)
                      .|..++..+|...-       -...+++.-..+.+.++|+||-... .+..+..-|-.+||.-|+++..+++++..++++
T Consensus       131 ~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~-~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~  209 (248)
T PRK12377        131 SVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQR-ETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEA  209 (248)
T ss_pred             CeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH
Confidence            46778888887631       1234677778999999999994432 245577899999999999999999999999988


Q ss_pred             hcc
Q 024706          196 LFN  198 (264)
Q Consensus       196 Lf~  198 (264)
                      |-.
T Consensus       210 l~~  212 (248)
T PRK12377        210 MST  212 (248)
T ss_pred             HHH
Confidence            864

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=91.15  E-value=0.58  Score=40.11  Aligned_cols=75  Identities=17%  Similarity=0.181  Sum_probs=55.8

Q ss_pred             CCeEEeeHHHHhcC------CCCcccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhh
Q 024706          122 NGCAYFEFEELCDK------PLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQ  195 (264)
Q Consensus       122 ~~va~f~F~eLC~~------p~~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~  195 (264)
                      ..|.++++.+|+..      .-...+++.-..+.+.++|+|+-... .+..++.-|-.+||.-|+++ +.++++..++++
T Consensus        76 ~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~-~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~~~~  153 (178)
T PF01695_consen   76 YSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEP-LSEWEAELLFEIIDERYERK-PTIITSNLSPSE  153 (178)
T ss_dssp             --EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT--EEEEEESS-HHH
T ss_pred             cceeEeecCceeccccccccccchhhhcCccccccEecccccceee-ecccccccchhhhhHhhccc-CeEeeCCCchhh
Confidence            35788999999854      22344677777889999999996543 34567788999999999975 899999999999


Q ss_pred             hcc
Q 024706          196 LFN  198 (264)
Q Consensus       196 Lf~  198 (264)
                      |..
T Consensus       154 l~~  156 (178)
T PF01695_consen  154 LEE  156 (178)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            886

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK08727 hypothetical protein; Validated

Probab=90.84  E-value=0.81  Score=40.71  Aligned_cols=72  Identities=17%  Similarity=0.159  Sum_probs=52.9

Q ss_pred             CeEEeeHHHHhcCCCCcccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhhcc
Q 024706          123 GCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFN  198 (264)
Q Consensus       123 ~va~f~F~eLC~~p~~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~Lf~  198 (264)
                      .+.+++..+++....   +.+.-..+.+.++|+|+-.+...... ..-+..+++.+|+++..+++++..+|.++-.
T Consensus        71 ~~~y~~~~~~~~~~~---~~~~~l~~~dlLiIDDi~~l~~~~~~-~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~  142 (233)
T PRK08727         71 SSAYLPLQAAAGRLR---DALEALEGRSLVALDGLESIAGQRED-EVALFDFHNRARAAGITLLYTARQMPDGLAL  142 (233)
T ss_pred             cEEEEeHHHhhhhHH---HHHHHHhcCCEEEEeCcccccCChHH-HHHHHHHHHHHHHcCCeEEEECCCChhhhhh
Confidence            456677777765422   33444567889999999877654443 3455689999999999999999999998853

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=90.34  E-value=0.42  Score=45.78  Aligned_cols=54  Identities=17%  Similarity=0.275  Sum_probs=45.9

Q ss_pred             HHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhhcccc
Q 024706          144 GLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKI  200 (264)
Q Consensus       144 ~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~Lf~~~  200 (264)
                      +|++..+.++++..-+   .+...|.-.-.|...|+++||-||+++..+|++||.+.
T Consensus       123 ~l~~~~~lLcfDEF~V---~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~g  176 (362)
T PF03969_consen  123 ELAKESRLLCFDEFQV---TDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNG  176 (362)
T ss_pred             HHHhcCCEEEEeeeec---cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCc
Confidence            6788999999997755   45556777777899999999999999999999999753

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>PRK06526 transposase; Provisional

Probab=87.87  E-value=0.57  Score=42.60  Aligned_cols=74  Identities=14%  Similarity=0.101  Sum_probs=52.9

Q ss_pred             CeEEeeHHHHhcCC-----C-CcccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhh
Q 024706          123 GCAYFEFEELCDKP-----L-GAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL  196 (264)
Q Consensus       123 ~va~f~F~eLC~~p-----~-~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~L  196 (264)
                      .|.+++..+|+..-     . ...+.+.-..+++.++|+++..+.. +...+.-|-.+||.-|+++ .+++++..|+.++
T Consensus       128 ~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~-~~~~~~~L~~li~~r~~~~-s~IitSn~~~~~w  205 (254)
T PRK06526        128 RVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPF-EPEAANLFFQLVSSRYERA-SLIVTSNKPFGRW  205 (254)
T ss_pred             chhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCC-CHHHHHHHHHHHHHHHhcC-CEEEEcCCCHHHH
Confidence            45567777776531     1 1123444446789999999987643 3455677999999999986 5999999999988


Q ss_pred             cc
Q 024706          197 FN  198 (264)
Q Consensus       197 f~  198 (264)
                      ..
T Consensus       206 ~~  207 (254)
T PRK06526        206 GE  207 (254)
T ss_pred             HH
Confidence            75

>PRK09183 transposase/IS protein; Provisional

Probab=86.42  E-value=1.5  Score=39.74  Aligned_cols=74  Identities=12%  Similarity=0.015  Sum_probs=51.5

Q ss_pred             CeEEeeHHHHhcCC------CCcccHH-HHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhh
Q 024706          123 GCAYFEFEELCDKP------LGAADYF-GLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQ  195 (264)
Q Consensus       123 ~va~f~F~eLC~~p------~~~~DYl-~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~  195 (264)
                      .|..++..+|...-      -+....+ ......+.++|+++-.. ..+..++.-|..+||..|+++ .+++++..++.+
T Consensus       132 ~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~-~~~~~~~~~lf~li~~r~~~~-s~iiTsn~~~~~  209 (259)
T PRK09183        132 KVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL-PFSQEEANLFFQVIAKRYEKG-SMILTSNLPFGQ  209 (259)
T ss_pred             eEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC-CCChHHHHHHHHHHHHHHhcC-cEEEecCCCHHH
Confidence            45666777776321      1111222 22456789999999543 334567778999999999987 589999999999


Q ss_pred             hcc
Q 024706          196 LFN  198 (264)
Q Consensus       196 Lf~  198 (264)
                      +..
T Consensus       210 w~~  212 (259)
T PRK09183        210 WDQ  212 (259)
T ss_pred             HHH
Confidence            875

>PRK06835 DNA replication protein DnaC; Validated

Probab=86.08  E-value=1.4  Score=41.61  Aligned_cols=56  Identities=14%  Similarity=0.079  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHCCCEEEEcCCCCchhhccCCCcccchhhHHHHHHhccEEEEeCCCCCcCCC
Q 024706           10 ILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKM   71 (264)
Q Consensus        10 iL~rLf~~Lf~~GvvlVaTSN~~P~dLy~ngl~r~~FlPfI~~L~~~~~V~~ld~~~DYR~~   71 (264)
                      .|-.++.....+|--+|.|||.+|++|... +.    .+....|...|.++.+.| .|+|..
T Consensus       267 ~Lf~iin~R~~~~k~tIiTSNl~~~el~~~-~~----eri~SRL~~~~~~i~~~G-~d~R~~  322 (329)
T PRK06835        267 ELFNLINKRLLRQKKMIISTNLSLEELLKT-YS----ERISSRLLGNFTLLKFYG-EDIRIK  322 (329)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCHHHHHHH-Hh----HHHHHHHHcCCEEEEecC-cChhhH
Confidence            455667777777888999999999998541 11    245678889999999975 999974

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=85.50  E-value=2  Score=44.16  Aligned_cols=74  Identities=12%  Similarity=0.262  Sum_probs=55.0

Q ss_pred             CeEEeeHHHHhcCCC------CcccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhh
Q 024706          123 GCAYFEFEELCDKPL------GAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL  196 (264)
Q Consensus       123 ~va~f~F~eLC~~p~------~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~L  196 (264)
                      .|.+++.++++..-.      ....|..--++++.++|+||-.+..... ...-|.++++.+|+++..+++++..+|.+|
T Consensus       346 ~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~-tqeeLF~l~N~l~e~gk~IIITSd~~P~eL  424 (617)
T PRK14086        346 RVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES-TQEEFFHTFNTLHNANKQIVLSSDRPPKQL  424 (617)
T ss_pred             eEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH-HHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence            567888888774311      1224555556789999999988754332 346688999999999999999999999887


Q ss_pred             c
Q 024706          197 F  197 (264)
Q Consensus       197 f  197 (264)
                      =
T Consensus       425 ~  425 (617)
T PRK14086        425 V  425 (617)
T ss_pred             h
Confidence            3

>PRK08084 DNA replication initiation factor; Provisional

Probab=85.38  E-value=3  Score=37.09  Aligned_cols=70  Identities=16%  Similarity=0.205  Sum_probs=50.0

Q ss_pred             eEEeeHHHHhcCCCCcccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcC-CeEEEEecCChhhhc
Q 024706          124 CAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENR-ARLLCTAEGSPFQLF  197 (264)
Q Consensus       124 va~f~F~eLC~~p~~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~-vkL~~sa~~~~~~Lf  197 (264)
                      +.+.++++....   ..+.+.--++++.++|++|-.+.... ....-|-++++.+||.+ +++++++..||.++-
T Consensus        76 v~y~~~~~~~~~---~~~~~~~~~~~dlliiDdi~~~~~~~-~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~  146 (235)
T PRK08084         76 VGYVPLDKRAWF---VPEVLEGMEQLSLVCIDNIECIAGDE-LWEMAIFDLYNRILESGRTRLLITGDRPPRQLN  146 (235)
T ss_pred             EEEEEHHHHhhh---hHHHHHHhhhCCEEEEeChhhhcCCH-HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcC
Confidence            556666664332   23445555667899999998875433 33445889999999987 589999999998864

>PRK12377 putative replication protein; Provisional

Probab=84.25  E-value=2.5  Score=38.35  Aligned_cols=60  Identities=8%  Similarity=0.039  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHHHHCCCEEEEcCCCCchhhccCCCcccchhhHHHHHHhc-cEEEEeCCCCCcCCCC
Q 024706            7 DALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKER-CVVHEIGSSVDYRKMT   72 (264)
Q Consensus         7 DAmiL~rLf~~Lf~~GvvlVaTSN~~P~dLy~ngl~r~~FlPfI~~L~~~-~~V~~ld~~~DYR~~~   72 (264)
                      ..-+|-.+++.-...+.-+|.|||..+++|.+. +.    -+.++.|..+ |.++++++ .+||..-
T Consensus       181 ~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~-~~----~ri~dRl~~~~~~~v~~~g-~s~R~~~  241 (248)
T PRK12377        181 EQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTL-LG----ERVMDRMTMNGGRWVNFNW-ESWRPNV  241 (248)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHH-hh----HHHHHHHhhCCCeEEEeCC-cCccccc
Confidence            344677777777777788899999999999752 22    2467888754 79999998 9999864

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=83.95  E-value=3.9  Score=35.23  Aligned_cols=70  Identities=17%  Similarity=0.246  Sum_probs=50.8

Q ss_pred             CeEEeeHHHHhcCCCCcccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhh
Q 024706          123 GCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL  196 (264)
Q Consensus       123 ~va~f~F~eLC~~p~~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~L  196 (264)
                      .+.+++..+++..+   .+.+...+...+++|++|..++... +....+..++|.+++.+..+++++..++.++
T Consensus        68 ~~~~i~~~~~~~~~---~~~~~~~~~~~lLvIDdi~~l~~~~-~~~~~L~~~l~~~~~~~~~iIits~~~~~~~  137 (226)
T TIGR03420        68 SAIYLPLAELAQAD---PEVLEGLEQADLVCLDDVEAIAGQP-EWQEALFHLYNRVREAGGRLLIAGRAAPAQL  137 (226)
T ss_pred             cEEEEeHHHHHHhH---HHHHhhcccCCEEEEeChhhhcCCh-HHHHHHHHHHHHHHHcCCeEEEECCCChHHC
Confidence            35677777776543   3444555677899999998875432 2356777889999999889999998877654

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK08727 hypothetical protein; Validated

Probab=83.87  E-value=2.5  Score=37.54  Aligned_cols=48  Identities=23%  Similarity=0.405  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHHHCCCEEEEcCCCCchhhccCCCcccchhhHHHHHHhc---cEEEEeCC
Q 024706            7 DALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKER---CVVHEIGS   64 (264)
Q Consensus         7 DAmiL~rLf~~Lf~~GvvlVaTSN~~P~dLy~ngl~r~~FlPfI~~L~~~---~~V~~ld~   64 (264)
                      +...|-+++..+.++|.-||.|||.+|+++..          ..+-|+.+   |.++++..
T Consensus       111 ~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~----------~~~dL~SRl~~~~~~~l~~  161 (233)
T PRK08727        111 DEVALFDFHNRARAAGITLLYTARQMPDGLAL----------VLPDLRSRLAQCIRIGLPV  161 (233)
T ss_pred             HHHHHHHHHHHHHHcCCeEEEECCCChhhhhh----------hhHHHHHHHhcCceEEecC
Confidence            44556678888888899999999999999864          23455556   78888875

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=83.17  E-value=1.5  Score=39.73  Aligned_cols=100  Identities=15%  Similarity=0.142  Sum_probs=69.7

Q ss_pred             CCCeEEeeHHHHhcCCCCccc-------HHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCCh
Q 024706          121 ANGCAYFEFEELCDKPLGAAD-------YFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSP  193 (264)
Q Consensus       121 ~~~va~f~F~eLC~~p~~~~D-------Yl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~  193 (264)
                      .-.|..++..||-..-..+-+       .+..-++++.++|+|+=.... +..++-=|..+|+..|+++.. ++++..|+
T Consensus       133 g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~-~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~  210 (254)
T COG1484         133 GISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPF-SQEEADLLFQLISRRYESRSL-IITSNLSF  210 (254)
T ss_pred             CCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccC-CHHHHHHHHHHHHHHHhhccc-eeecCCCh
Confidence            456788999998876333333       355678999999998855422 233455566699999999999 99999888


Q ss_pred             hhhccccccchhhhhcccccccccccccccccccCcccccccccccchHhhhCchhHH
Q 024706          194 FQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEYL  251 (264)
Q Consensus       194 ~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~Faf~Rt~SRL~EMqs~~y~  251 (264)
                      +++-..-                           +.. . --+|.+|||.+|...-++
T Consensus       211 ~~~~~~~---------------------------~~~-~-~~e~~~dRi~~~~~~~~~  239 (254)
T COG1484         211 GEWDELF---------------------------GDD-A-LTEALLDRILHHSHVIVI  239 (254)
T ss_pred             HHHHhhc---------------------------cCc-h-hHHHHHHHHHhcceeeEe
Confidence            7766410                           000 0 125999999999977664

>PRK08939 primosomal protein DnaI; Reviewed

Probab=82.36  E-value=2.5  Score=39.54  Aligned_cols=102  Identities=10%  Similarity=0.083  Sum_probs=66.8

Q ss_pred             CeEEeeHHHHhcCC------CCcccHHHHhcccCeEEEcCCCCCCCCChhHHH-HHH-HHHHHHHhcCCeEEEEecCChh
Q 024706          123 GCAYFEFEELCDKP------LGAADYFGLFKIFHTLALEGIPIFGLHNRTAAY-RFV-TLVDVMYENRARLLCTAEGSPF  194 (264)
Q Consensus       123 ~va~f~F~eLC~~p------~~~~DYl~La~~f~ti~i~~VP~l~~~~~~~ar-RFI-~LID~lYd~~vkL~~sa~~~~~  194 (264)
                      .|.++++.+|...-      -+..+.+.-.++.+.++|+|+=.-.  ..+..+ -++ .++|.-|..+...++++..+++
T Consensus       186 ~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~--~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~  263 (306)
T PRK08939        186 SSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQ--MSSWVRDEVLGVILQYRMQEELPTFFTSNFDFD  263 (306)
T ss_pred             CEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCcc--ccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHH
Confidence            46778887765431      1335678888999999999994432  222333 243 4568889999999999999999


Q ss_pred             hhccccccchhhhhcccccccccccccccccccCcccccccccccchHhhhCch
Q 024706          195 QLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSK  248 (264)
Q Consensus       195 ~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~Faf~Rt~SRL~EMqs~  248 (264)
                      +|...-..   .    .               .|+.+.-.-+|.++||.+++..
T Consensus       264 el~~~~~~---~----~---------------~g~~e~~~a~ri~dRI~~~~~~  295 (306)
T PRK08939        264 ELEHHLAY---T----Q---------------RGEDETWKAARIMERIRYLAKE  295 (306)
T ss_pred             HHHHHHhh---h----c---------------cCcchhhHHHHHHHHHHHhcEE
Confidence            98852100   0    0               0222334456999999887643

>COG1485 Predicted ATPase [General function prediction only]

Probab=82.05  E-value=3  Score=40.04  Aligned_cols=56  Identities=14%  Similarity=0.208  Sum_probs=46.5

Q ss_pred             cHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhhccc
Q 024706          141 DYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNK  199 (264)
Q Consensus       141 DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~Lf~~  199 (264)
                      .=.+|+++++.++++..-+   .+-..|.=.-.|..+|..+||-|++++..+|++||.+
T Consensus       123 iA~~~~~~~~vLCfDEF~V---tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~d  178 (367)
T COG1485         123 IADELAAETRVLCFDEFEV---TDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKD  178 (367)
T ss_pred             HHHHHHhcCCEEEeeeeee---cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhccc
Confidence            3457889999999885533   5666677777899999999999999999999999975

>PRK06921 hypothetical protein; Provisional

Probab=81.26  E-value=2.7  Score=38.42  Aligned_cols=55  Identities=15%  Similarity=0.137  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHCCCEEEEcCCCCchhhccCCCcccchhhHHHHHHhcc--EEEEeCCCCCcCC
Q 024706            9 LILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERC--VVHEIGSSVDYRK   70 (264)
Q Consensus         9 miL~rLf~~Lf~~GvvlVaTSN~~P~dLy~ngl~r~~FlPfI~~L~~~~--~V~~ld~~~DYR~   70 (264)
                      ..|-.++..-..+|..+|.|||.+|++|..-  .    ......|.++|  .++.++| .-||.
T Consensus       202 ~~lf~iin~R~~~~k~tIitsn~~~~el~~~--~----~~l~sRi~~r~~~~~i~~~g-~s~r~  258 (266)
T PRK06921        202 EQMYSVLNYRYLNHKPILISSELTIDELLDI--D----EALGSRIVEMCKDYLVIIKG-DSFEL  258 (266)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCHHHHhhh--h----hHHHHHHHHhccCeEEEecC-ccccc
Confidence            3566777777777888899999999999863  2    13334555555  4888876 43443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.29
2qgz_A	308	Helicase loader, putative primosome component; str	96.67
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.79
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	92.57
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	91.78
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	90.31
2qgz_A	308	Helicase loader, putative primosome component; str	89.13

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.29  E-value=0.00022  Score=59.40  Aligned_cols=60  Identities=12%  Similarity=0.034  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHCCCEEEEcCCCCchhhccC-------CCcccchhhHHHHHHhccEEEEeCCCCCcC
Q 024706            9 LILNRLFRHLFNNGVILVSTSNRAPDNLYER-------GLQRDLFLPFISTLKERCVVHEIGSSVDYR   69 (264)
Q Consensus         9 miL~rLf~~Lf~~GvvlVaTSN~~P~dLy~n-------gl~r~~FlPfI~~L~~~~~V~~ld~~~DYR   69 (264)
                      .++..+++.....+..+|+|||.+|++|...       +.......++++.|..+|.+++++| .|||
T Consensus       136 ~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~~~~~~~~~~~~~~~~~~~~Rl~~~~~~~~~~g-~~~R  202 (202)
T 2w58_A          136 DVFGPILQYRMFENLPTFFTSNFDMQQLAHHLTYSQRGEEEKVKAARIMERIRYLAYPIEITG-PNRR  202 (202)
T ss_dssp             TTHHHHHHHHHHTTCCEEEEESSCHHHHHHHSCCCC-----CCHHHHHHHHHHHHEEEEECCS-CCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHhhhccCcchhHHHHHHHHHHHHhceEEeecC-CCCC
Confidence            4667777777788999999999999999762       2345568889999999999999986 9998

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.67  E-value=0.0011  Score=59.97  Aligned_cols=63  Identities=10%  Similarity=-0.012  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHCCCEEEEcCCCCchhhccC------CCcccchhhHHHHHHhccEEEEeCCCCCcCCCC
Q 024706            9 LILNRLFRHLFNNGVILVSTSNRAPDNLYER------GLQRDLFLPFISTLKERCVVHEIGSSVDYRKMT   72 (264)
Q Consensus         9 miL~rLf~~Lf~~GvvlVaTSN~~P~dLy~n------gl~r~~FlPfI~~L~~~~~V~~ld~~~DYR~~~   72 (264)
                      .+|..+++.....+..+|+|||.+|++|...      |.......+.++.|..+|.+++++| .+||+..
T Consensus       235 ~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~~~~~~g~~~~~~~~i~dRl~~~~~~i~l~g-~s~R~~~  303 (308)
T 2qgz_A          235 EVLQVILQYRMLEELPTFFTSNYSFADLERKWATIKGSDETWQAKRVMERVRYLAREFHLEG-ANRRLEH  303 (308)
T ss_dssp             TTHHHHHHHHHHHTCCEEEEESSCHHHHHTTCC--------CCCCSHHHHHHHHEEEEECCS-CCCC---
T ss_pred             HHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHhhccCccchhhhHHHHHHHHHhCEEEEecC-Ccccccc
Confidence            3677778777777889999999999999874      4344456679999999999999987 9999854

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.79  E-value=0.0078  Score=49.03  Aligned_cols=59  Identities=14%  Similarity=0.060  Sum_probs=42.4

Q ss_pred             ChhhHHHHHHHHHHHHHCCCEEEEcCCCCchhhccCCCc-----ccch-hhHHHHHHhccEEEEe
Q 024706            4 DVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQ-----RDLF-LPFISTLKERCVVHEI   62 (264)
Q Consensus         4 DIaDAmiL~rLf~~Lf~~GvvlVaTSN~~P~dLy~ngl~-----r~~F-lPfI~~L~~~~~V~~l   62 (264)
                      |......|..+++.+.+.|..+|.|||.+|++|+++|+.     ++++ ...++.|...|.++++
T Consensus       115 ~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~~~~~~~~~~~~l~~~~~~~i~~rl~~~~~~i~~  179 (180)
T 3ec2_A          115 SDWQRELISYIITYRYNNLKSTIITTNYSLQREEESSVRISADLASRLGENVVSKIYEMNELLVI  179 (180)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC---CHHHHHHHHHHHHCHHHHHHHHHHEEEECC
T ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEEcCCChhHhhhhccchhhHHHHHHHHHHHHHHHhcCeeeee
Confidence            344556788889999999999999999999998875431     2333 4456788888988875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=92.57  E-value=0.2  Score=40.42  Aligned_cols=56  Identities=11%  Similarity=-0.035  Sum_probs=43.6

Q ss_pred             cHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhhc
Q 024706          141 DYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLF  197 (264)
Q Consensus       141 DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~Lf  197 (264)
                      +.+....+.+.++|+++-.. ..+......|..+++..|+.++.+++++..+++++.
T Consensus        93 ~~~~~~~~~~llilDE~~~~-~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~~~  148 (180)
T 3ec2_A           93 KFLKTVLNSPVLVLDDLGSE-RLSDWQRELISYIITYRYNNLKSTIITTNYSLQREE  148 (180)
T ss_dssp             HHHHHHHTCSEEEEETCSSS-CCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC--
T ss_pred             HHHHHhcCCCEEEEeCCCCC-cCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhHhh
Confidence            66777778999999996432 234445567788999999999999999999998875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=91.78  E-value=0.094  Score=43.08  Aligned_cols=59  Identities=12%  Similarity=0.051  Sum_probs=41.6

Q ss_pred             ccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhhcc
Q 024706          140 ADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFN  198 (264)
Q Consensus       140 ~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~Lf~  198 (264)
                      .+.+....+.++++|++|-........+..-|-.+++..|..+.++++++..+|+++..
T Consensus       107 ~~~~~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~  165 (202)
T 2w58_A          107 NEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH  165 (202)
T ss_dssp             HHHHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHH
T ss_pred             HHHHHHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH
Confidence            34555566778999999955433332222234458999999999999999999999875

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=90.31  E-value=0.33  Score=38.79  Aligned_cols=52  Identities=15%  Similarity=0.116  Sum_probs=40.6

Q ss_pred             HHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCe-EEEEecCChhhhcc
Q 024706          144 GLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRAR-LLCTAEGSPFQLFN  198 (264)
Q Consensus       144 ~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vk-L~~sa~~~~~~Lf~  198 (264)
                      ++..+.+.++|+++-.+   .......+..+|+.+|+.+.. +++++..+|+++..
T Consensus        79 ~~~~~~~lLilDE~~~~---~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~  131 (149)
T 2kjq_A           79 DAAFEAEYLAVDQVEKL---GNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVI  131 (149)
T ss_dssp             GGGGGCSEEEEESTTCC---CSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSC
T ss_pred             HHHhCCCEEEEeCcccc---ChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccc
Confidence            34567899999997654   333377799999999999887 99999888877653

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=89.13  E-value=0.48  Score=42.41  Aligned_cols=75  Identities=11%  Similarity=0.042  Sum_probs=48.2

Q ss_pred             CCeEEeeHHHHhcC---CC---CcccHHHHhcccCeEEEcCCCCCCCCChhHHHH-HH-HHHHHHHhcCCeEEEEecCCh
Q 024706          122 NGCAYFEFEELCDK---PL---GAADYFGLFKIFHTLALEGIPIFGLHNRTAAYR-FV-TLVDVMYENRARLLCTAEGSP  193 (264)
Q Consensus       122 ~~va~f~F~eLC~~---p~---~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arR-FI-~LID~lYd~~vkL~~sa~~~~  193 (264)
                      ..+..+++.+|...   ..   ...+.+....+.++++|++|-.....  ...+. +. .+++..|..+..+++++..+|
T Consensus       182 ~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~--~~~~~~ll~~ll~~r~~~~~~~IitSN~~~  259 (308)
T 2qgz_A          182 VSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQAT--SWVRDEVLQVILQYRMLEELPTFFTSNYSF  259 (308)
T ss_dssp             CCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC--------CTTTTHHHHHHHHHHHTCCEEEEESSCH
T ss_pred             CcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCC--HHHHHHHHHHHHHHHHHCCCcEEEECCCCH
Confidence            34666776665431   11   12345566677899999999443222  12232 44 489999988999999999999


Q ss_pred             hhhcc
Q 024706          194 FQLFN  198 (264)
Q Consensus       194 ~~Lf~  198 (264)
                      ++|..
T Consensus       260 ~~l~~  264 (308)
T 2qgz_A          260 ADLER  264 (308)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            99885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	91.84

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.84  E-value=0.14  Score=41.50  Aligned_cols=58  Identities=12%  Similarity=0.325  Sum_probs=48.2

Q ss_pred             cccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhhc
Q 024706          139 AADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLF  197 (264)
Q Consensus       139 ~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~Lf  197 (264)
                      ..++...-+..+.++|+||..+... .....-|.++|+.+++.+.++++++..+|.++=
T Consensus        88 ~~~~~~~~~~~dll~iDDi~~i~~~-~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~  145 (213)
T d1l8qa2          88 INEFRNMYKSVDLLLLDDVQFLSGK-ERTQIEFFHIFNTLYLLEKQIILASDRHPQKLD  145 (213)
T ss_dssp             HHHHHHHHHTCSEEEEECGGGGTTC-HHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT
T ss_pred             hhhHHHHHhhccchhhhhhhhhcCc-hHHHHHHHHHHHHHhhccceEEEecCCcchhcc
Confidence            4567777789999999999887433 445566888999999999999999999999883