Citrus Sinensis ID: 024726

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
MAVAVCGNKRSFFEDLPSSPPVSKRVRCGSASPSKFTPPPPPTTTAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCSRSDQERLGFKEELGTNSAAGEETAAASDSSSDPSGFPQNGAEWVELFVKEMTSATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQSSSIPGRFHPDVF
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
ccEEEEcccccHHHccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHcccHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
mavavcgnkrsffedlpssppvskrvrcgsaspskftppppptttapqLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCSRSDQERLgfkeelgtnsaageetaaasdsssdpsgfpqngAEWVELFVKEMTSATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLkqaqqsssipgrfhpdvf
mavavcgnkrsffedlpssppvsKRVRCGSaspskftppppptTTAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCSRSDQERLGFKEELGTNSAAGEETAaasdsssdpsgfPQNGAEWVELFVKEMTsatsmddaRARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAiqherqkdyenrnREVEYQKHMVSQYQEQLRTLEINNYALSMHLKqaqqsssipgrfHPDVF
MAVAVCGNKRSFFEDLPSSPPVSKRVRCGSASPSKFtppppptttapQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCSRSDQERLGFKEELgtnsaageetaaasdsssdPSGFPQNGAEWVELFVKEMTSATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQSSSIPGRFHPDVF
***************************************************RLRAFFPQLEPQLLERALEECNADL*****************************************************EWVELFVK*************************************************ETVIRENSILKRAVAI************************YQEQLRTLEINNYAL**********************
MAVAVCGNKRSFFE*********************************QLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNEL*****************************************GAEWVELFVKEMTSATSMDDARARASRVLEILEKSI*************************VIRENSILKRAVAIQH*****************HMVSQYQEQLRTLEINNYALSMH*******************
MAVAVCGNKRSFFED****************************TTAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCSRSDQERLGFKEELGTN********************PQNGAEWVELFVKEMTSATSMDDARARASRVLEILEKSIMAR**********KENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHL********IPGRFHPDVF
********KRSFFEDLP***************************TAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCSRS**************************************AEWVELFVKEMTSATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQ****PGRFH****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAVAVCGNKRSFFEDLPSSPPVSKRVRCGSASPSKFTPPPPPTTTAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCSRSDQERLGFKEELGTNSAAGEETAAASDSSSDPSGFPQNGAEWVELFVKEMTSATSMDDARARASRVLEILEKSIMARASDEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQSSSIPGRFHPDVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query263
359484221276 PREDICTED: uncharacterized protein LOC10 0.984 0.938 0.621 3e-88
225445591283 PREDICTED: uncharacterized protein LOC10 0.980 0.911 0.625 1e-87
449443051278 PREDICTED: uncharacterized protein LOC10 0.961 0.910 0.572 1e-79
224144158270 predicted protein [Populus trichocarpa] 0.954 0.929 0.549 1e-77
118483552286 unknown [Populus trichocarpa] 0.969 0.891 0.527 6e-76
449468932258 PREDICTED: uncharacterized protein LOC10 0.969 0.988 0.567 8e-76
255553235257 conserved hypothetical protein [Ricinus 0.942 0.964 0.569 8e-76
147819091255 hypothetical protein VITISV_039445 [Viti 0.965 0.996 0.541 3e-75
225442920255 PREDICTED: uncharacterized protein LOC10 0.965 0.996 0.541 3e-75
358248110260 uncharacterized protein LOC100813137 [Gl 0.965 0.976 0.550 1e-74
>gi|359484221|ref|XP_003633082.1| PREDICTED: uncharacterized protein LOC100250952 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  330 bits (847), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 174/280 (62%), Positives = 209/280 (74%), Gaps = 21/280 (7%)

Query: 1   MAVAVCGNKRSFFEDLPSSPPVSKRVRCGSASPSKFTPP----PPPT---TTAPQ--LLD 51
           M+  VCG KRSFFEDLP++PPVSKR+RC S+SP +F+PP      P+   +TA Q  +LD
Sbjct: 1   MSAIVCG-KRSFFEDLPTTPPVSKRIRCSSSSPVRFSPPRSISASPSQSQSTASQASVLD 59

Query: 52  RLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCSRSDQERLGFKEELGTNSAAGEET 111
            LRA FP ++ Q LE+ALEEC  DLDSTIK LNEL   S Q  LGF    GT S  G ET
Sbjct: 60  HLRALFPDMDKQFLEKALEECGNDLDSTIKSLNELRLGSAQNNLGFGA--GT-SDVGLET 116

Query: 112 --------AAASDSSSDPSGFPQNGAEWVELFVKEMTSATSMDDARARASRVLEILEKSI 163
                     +S+  S P     +GAEWVELFV+EM SA++MDDARARASR LE+LEKSI
Sbjct: 117 KVQLQSQEVVSSEDPSAPKNLSMDGAEWVELFVREMMSASNMDDARARASRALEVLEKSI 176

Query: 164 MARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHM 223
            ARAS EAAQSF +EN  LKEQ+E +++EN ILKRAV+IQHERQK+ E RN+E+++ K +
Sbjct: 177 CARASAEAAQSFHQENLMLKEQVEALLQENIILKRAVSIQHERQKESEERNQELQHLKQV 236

Query: 224 VSQYQEQLRTLEINNYALSMHLKQAQQSSSIPGRFHPDVF 263
           V+QYQEQLRTLE+NNYALSMHL+QAQQSSSIPG FHPDVF
Sbjct: 237 VTQYQEQLRTLEVNNYALSMHLRQAQQSSSIPGHFHPDVF 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225445591|ref|XP_002285400.1| PREDICTED: uncharacterized protein LOC100250952 isoform 1 [Vitis vinifera] gi|297738994|emb|CBI28239.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449443051|ref|XP_004139294.1| PREDICTED: uncharacterized protein LOC101217268 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224144158|ref|XP_002325204.1| predicted protein [Populus trichocarpa] gi|222866638|gb|EEF03769.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118483552|gb|ABK93674.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449468932|ref|XP_004152175.1| PREDICTED: uncharacterized protein LOC101208593 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255553235|ref|XP_002517660.1| conserved hypothetical protein [Ricinus communis] gi|223543292|gb|EEF44824.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|147819091|emb|CAN67646.1| hypothetical protein VITISV_039445 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442920|ref|XP_002264846.1| PREDICTED: uncharacterized protein LOC100250980 [Vitis vinifera] gi|297743476|emb|CBI36343.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|358248110|ref|NP_001240071.1| uncharacterized protein LOC100813137 [Glycine max] gi|255636562|gb|ACU18619.1| unknown [Glycine max] gi|255646062|gb|ACU23518.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query263
TAIR|locus:2181738179 AT5G02510 "AT5G02510" [Arabido 0.505 0.743 0.391 6.8e-24
TAIR|locus:2181738 AT5G02510 "AT5G02510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 54/138 (39%), Positives = 92/138 (66%)

Query:   127 NGAEWVELFVKEMTSATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQI 186
             +GA+WV+  V EMT A ++DD R R + +LE LE  I  + +  A++    E A++KE +
Sbjct:    46 DGAKWVDRLVSEMTKAINIDDMRRRVAVILEALESII--KKNTNASKKL--EYASMKESL 101

Query:   187 ETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLK 246
             +++I +N ILKR +A QH+R  + E + ++V + + +V QYQEQ+  LE++NYA+ +HL+
Sbjct:   102 QSLINDNQILKRVIANQHQRSSENEEKAKQVLHLRGVVGQYQEQVHKLELSNYAMKLHLQ 161

Query:   247 QAQQS-SSIPGRFHPDVF 263
             ++QQ  +S  G   PD++
Sbjct:   162 RSQQQQTSFSGNLPPDIY 179


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.128   0.355    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      263       233   0.00086  113 3  11 22  0.43    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  170 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.29u 0.11s 26.40t   Elapsed:  00:00:01
  Total cpu time:  26.29u 0.11s 26.40t   Elapsed:  00:00:01
  Start:  Mon May 20 18:12:43 2013   End:  Mon May 20 18:12:44 2013
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
pfam0284542 pfam02845, CUE, CUE domain 0.002
>gnl|CDD|202430 pfam02845, CUE, CUE domain Back     alignment and domain information 
 Score = 34.7 bits (81), Expect = 0.002
 Identities = 10/40 (25%), Positives = 23/40 (57%)

Query: 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNEL 86
           ++L+ L+  FP L+ +++   L+  N ++++ I  L E 
Sbjct: 2  EEMLETLKEMFPDLDEEVIRAVLQASNGNVEAAIDALLEG 41

CUE domains have been shown to bind ubiquitin. It has been suggested that CUE domains are related to pfam00627 and this has been confirmed by the structure of the domain. CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Length = 42

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 263
PF14817 632 HAUS5: HAUS augmin-like complex subunit 5 99.0
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 98.31
smart0054643 CUE Domain that may be involved in binding ubiquit 98.27
PF0347439 DMA: DMRTA motif; InterPro: IPR005173 This region 97.46
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 96.1
COG307479 Uncharacterized protein conserved in bacteria [Fun 95.69
PRK1542279 septal ring assembly protein ZapB; Provisional 95.66
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 94.78
PF09744158 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte 94.53
cd0019438 UBA Ubiquitin Associated domain. The UBA domain is 93.33
smart0016537 UBA Ubiquitin associated domain. Present in Rad23, 93.23
PF10205102 KLRAQ: Predicted coiled-coil domain-containing pro 93.15
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 92.87
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 91.98
PRK10884206 SH3 domain-containing protein; Provisional 91.87
PF15058200 Speriolin_N: Speriolin N terminus 91.56
PHA02047101 phage lambda Rz1-like protein 91.55
PRK09413121 IS2 repressor TnpA; Reviewed 89.9
PF05010207 TACC: Transforming acidic coiled-coil-containing p 89.32
PF13851201 GAS: Growth-arrest specific micro-tubule binding 89.23
PLN02678 448 seryl-tRNA synthetase 89.11
KOG1853 333 consensus LIS1-interacting protein NUDE [Cytoskele 88.18
PRK05431 425 seryl-tRNA synthetase; Provisional 87.9
PRK11637 428 AmiB activator; Provisional 87.24
KOG4005 292 consensus Transcription factor XBP-1 [Transcriptio 87.23
PF1374789 DUF4164: Domain of unknown function (DUF4164) 87.11
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 86.97
TIGR00414 418 serS seryl-tRNA synthetase. This model represents 86.69
PF04111 314 APG6: Autophagy protein Apg6; InterPro: IPR007243 86.52
PF15058 200 Speriolin_N: Speriolin N terminus 86.49
PF10211189 Ax_dynein_light: Axonemal dynein light chain; Inte 86.28
TIGR03495135 phage_LysB phage lysis regulatory protein, LysB fa 85.68
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 84.95
PF11932 251 DUF3450: Protein of unknown function (DUF3450); In 83.89
KOG0971 1243 consensus Microtubule-associated protein dynactin 83.42
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 80.86
PF10828110 DUF2570: Protein of unknown function (DUF2570); In 80.8
PF10226195 DUF2216: Uncharacterized conserved proteins (DUF22 80.34
PRK13182175 racA polar chromosome segregation protein; Reviewe 80.33
>PF14817 HAUS5: HAUS augmin-like complex subunit 5 Back     alignment and domain information 
Probab=99.00  E-value=5.4e-09  Score=106.30  Aligned_cols=122  Identities=25%  Similarity=0.306  Sum_probs=105.6

Q ss_pred             ChhhHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024726          127 NGAEWVELFVKEMTS-ATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHE  205 (263)
Q Consensus       127 ~g~eWVEl~V~EM~~-Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQhe  205 (263)
                      .|-.+|.-||.|... -....+...|..+.++..|+.+...+..++. .+..|..++|..++.|..+.+.|+++++++++
T Consensus       308 e~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al-~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e  386 (632)
T PF14817_consen  308 EQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREAL-ALELEVAGLKASLNALRSECQRLKEAAAERQE  386 (632)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666555544 4458888899999999999998777665544 56779999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726          206 RQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQ  249 (263)
Q Consensus       206 R~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~  249 (263)
                      ...+++.+.++++++++++.+||+|||+|...||++..||.+.+
T Consensus       387 ~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~  430 (632)
T PF14817_consen  387 ALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSP  430 (632)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhCh
Confidence            99999999999999999999999999999999999999999855

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO [] Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans Back     alignment and domain information
>cd00194 UBA Ubiquitin Associated domain Back     alignment and domain information
>smart00165 UBA Ubiquitin associated domain Back     alignment and domain information
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF15058 Speriolin_N: Speriolin N terminus Back     alignment and domain information
>PHA02047 phage lambda Rz1-like protein Back     alignment and domain information
>PRK09413 IS2 repressor TnpA; Reviewed Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG4005 consensus Transcription factor XBP-1 [Transcription] Back     alignment and domain information
>PF13747 DUF4164: Domain of unknown function (DUF4164) Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF15058 Speriolin_N: Speriolin N terminus Back     alignment and domain information
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility Back     alignment and domain information
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT Back     alignment and domain information
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain Back     alignment and domain information
>PRK13182 racA polar chromosome segregation protein; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
2dhy_A67 CUE domain-containing protein 1; structural genomi 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 55.2 bits (132), Expect = 6e-09
 Identities = 44/301 (14%), Positives = 83/301 (27%), Gaps = 99/301 (32%)

Query: 44  TTAPQLLDRLRAFFPQLEPQLLERALEECNA--DLDSTIKKLNELCSRSDQER-L----- 95
            +   +L+ L+    Q++P    R+    N    + S   +L  L      E  L     
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 96  --------GFKEELG------------TNSAAGEETAAASDSSSDPSGFPQNGAEWVELF 135
                    F   L             T+  +   T   S              E   L 
Sbjct: 253 VQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTP--DEVKSLL 307

Query: 136 VK-----------EMTS---------ATSMDDARAR--------ASRVLEILEKSIMARA 167
           +K           E+ +         A S+ D  A           ++  I+E S+    
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 168 SDEAAQSFQK-----ENA-----TLK----EQIETVIRE--NSILKRAVAIQ-------- 203
             E  + F +      +A      L     + I++ +    N + K ++  +        
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 204 -HERQKDYENRNREVEYQKH--MVSQYQ-------EQLRTLEINNYA---LSMHLKQAQQ 250
                 + + +    EY  H  +V  Y        + L    ++ Y    +  HLK  + 
Sbjct: 428 IPSIYLELKVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 251 S 251
            
Sbjct: 487 P 487
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 67 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query263
2dhy_A67 CUE domain-containing protein 1; structural genomi 99.02
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 99.0
1p3q_Q54 VPS9P, vacuolar protein sorting-associated protein 97.91
1otr_A49 Protein CUE2; protein-protein complex, cell cycle; 97.66
2di0_A71 Activating signal cointegrator 1 complex subunit 2 96.31
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 95.87
1vej_A74 Riken cDNA 4931431F19; UBA domain, three helix bun 95.21
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 95.17
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 95.04
2jy5_A52 Ubiquilin-1; UBA, alternative splicing, cytoplasm, 94.67
2g3q_A43 Protein YBL047C; endocytosis, solution structure, 93.94
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 93.79
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 93.37
2knz_A53 Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc 93.34
2dae_A75 KIAA0733 protein; mitogen-activated protein kinase 92.84
2cpw_A64 CBL-interacting protein STS-1 variant; ubiquitin a 92.61
2dah_A54 Ubiquilin-3; UBA domain, structural genomics, NPPS 91.95
2ejs_A58 Autocrine motility factor receptor, isoform 2; CUE 91.63
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 91.52
2bwb_A46 Ubiquitin-like protein DSK2; UBA, signaling protei 91.24
1wji_A63 Tudor domain containing protein 3; UBA domain, str 90.88
1wj7_A104 Hypothetical protein (RSGI RUH-015); UBA domain, u 89.81
1wr1_B58 Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu 89.49
2dak_A63 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 89.2
2ekf_A61 Ancient ubiquitous protein 1; CUE, ubiquitin ligas 88.92
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 88.68
1veg_A83 NEDD8 ultimate buster-1; ubiquitin associated doma 88.32
4g3o_A58 E3 ubiquitin-protein ligase AMFR; all-helical stru 88.15
2dag_A74 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 87.68
2cp9_A64 EF-TS, EF-TSMT, elongation factor TS, mitochondria 87.6
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 87.53
1whc_A64 RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain 87.34
1wiv_A73 UBP14, ubiquitin-specific protease 14; ubiquitin a 86.04
1dv0_A47 DNA repair protein HHR23A; helical bundle, DNA bin 85.96
2dai_A83 Ubadc1, ubiquitin associated domain containing 1; 84.61
2ekk_A47 UBA domain from E3 ubiquitin-protein ligase HUWE1; 84.33
2dkl_A85 Trinucleotide repeat containing 6C protein; TNRC6C 83.72
2oqq_A42 Transcription factor HY5; homodimer leucine zipper 83.41
2dq0_A 455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 81.17
1ses_A 421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 81.07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 80.85
2crn_A64 Ubash3A protein; compact three-helix bundle, struc 80.49
2dna_A67 Unnamed protein product; ubiquitin associated doma 80.02
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
Probab=99.02  E-value=5.4e-10  Score=83.31  Aligned_cols=44  Identities=25%  Similarity=0.489  Sum_probs=41.5

Q ss_pred             chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcccc
Q 024726           47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCSRS   90 (263)
Q Consensus        47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~~   90 (263)
                      +..+++|+.+||+||+++|+.+|++||+|+|+||++|.++...+
T Consensus        19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~   62 (67)
T 2dhy_A           19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLES   62 (67)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCC
Confidence            67799999999999999999999999999999999999998755
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A Back     alignment and structure
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4 Back     alignment and structure
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B Back     alignment and structure
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} Back     alignment and structure
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A Back     alignment and structure
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens} Back     alignment and structure
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A Back     alignment and structure
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query263
d1wgla_59 Toll-interacting protein {Human (Homo sapiens) [Ta 98.32
d1mn3a_54 Vacuolar protein sorting-associated protein vps9 { 98.23
d2di0a163 Activating signal cointegrator 1 complex subunit 2 95.82
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 92.98
d1seta1110 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 91.4
d1xb2b156 Elongation factor Ts (EF-Ts), N-terminal domain {C 89.93
d1aipc152 Elongation factor Ts (EF-Ts), N-terminal domain {T 87.93
d1wjia_63 Tudor domain containing protein 3, TDRD3 {Human (H 87.48
d1efub354 Elongation factor Ts (EF-Ts), N-terminal domain {E 87.36
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 84.54
d2cpwa151 Cbl-interacting protein p70, STS1 {Human (Homo sap 84.42
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 84.21
d1wgna_63 Ubiquitin-associated protein 1, UBAP1 {Human (Homo 83.2
d2dnaa150 Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus 81.13
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 80.38
d2py8a1120 RuBisCo chaperone RbcX {Synechocystis sp., strain 80.17
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3e-07  Score=65.45  Aligned_cols=42  Identities=19%  Similarity=0.438  Sum_probs=39.0

Q ss_pred             chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726           47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCS   88 (263)
Q Consensus        47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L   88 (263)
                      +..+..|..+||+||+.+|+.+|++|+.++|.||..|.++.-
T Consensus        10 Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~Msd   51 (59)
T d1wgla_          10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE   51 (59)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence            666999999999999999999999999999999999988643
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]} Back     information, alignment and structure