Citrus Sinensis ID: 024728

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MTSTPDPEEKLSSTLTEAPPSEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPSNNPLEPVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYRATGSAGRVGDQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHccEEEEccccccccEEEEEEcEEEEEEccccEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEEHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHEEccccccEEEEEEEEccEEEEEccccEEEEcccccEEEEEEEEEEEHHHHccccccccccccccEEEEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mtstpdpeeklsstlteappseeerkkwgthimgapavpsahpdnqkaaswnaenrqqiyhqpyveyspidkpsnnplepvihafNNWSTKAETIARNIWhnlktgpsvseaawGKVNLTAKAITEGGFESLFKQIfatdpnekLKKTFACYLstttgpvagTLYLSTARVafcsdrplcftapsgqeAWSYYKVMIPlanissvnpvtlkenasdKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEyratgsagrvgdq
Flexible Loop (DISEMBL)
mtstpdpeeklsstlteappseeERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPSNNPLEPVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLseyratgsagrvgdq
Low Complexity Region (SEG)
MTSTPDPEEKLSSTLTEAPPSEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPSNNPLEPVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYRATGSAGRVGDQ
Disordered region (IsUnstruct)
**********************************************************IYHQPYVEYS*********LEPVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSL***************
Disordered Region (DISOPRED)
***********************************************************************************AFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLA*******************KIVTVEGHEFWFMGFVNFEKATNHLL******************
Disordered Region (DISEMBL)
**************************KWGTHIMGAPAVP************NAENRQQIYHQPYVEYSPIDKPSNNPLEPVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYRA**********
Disordered Region (DISPRO)
**********************************************************IYHQPYVEYSPIDKPSNNPLEPVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEY************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSTPDPEEKLSSTLTEAPPSEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPSNNPLEPVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYRATGSAGRVGDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
Q9LYV6	272	GEM-like protein 5 OS=Ara	yes	no	0.882	0.852	0.721	1e-103
Q8S8F8	299	GLABRA2 expression modula	no	no	0.703	0.618	0.428	3e-45
Q9SE96	259	GEM-like protein 1 OS=Ara	no	no	0.703	0.714	0.443	2e-44
Q9M063	239	Putative GEM-like protein	no	no	0.623	0.686	0.390	6e-34
Q9FMW4	219	Putative GEM-like protein	no	no	0.733	0.881	0.371	1e-33
Q9FMW5	210	GEM-like protein 7 OS=Ara	no	no	0.558	0.7	0.428	2e-32
Q9FTA0	222	GEM-like protein 4 OS=Ara	no	no	0.604	0.716	0.402	3e-32
Q9FMW6	218	GEM-like protein 6 OS=Ara	no	no	0.555	0.669	0.431	4e-32
Q9M122	233	GEM-like protein 2 OS=Ara	no	no	0.737	0.832	0.364	6e-30

>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1

 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 168/233 (72%), Positives = 206/233 (88%), Gaps = 1/233 (0%)

Query: 21  SEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPS-NNPLE 79
           S  ++KKWGTH+MGAPA P AHPDNQ+AA+W A + QQ  +QPYV YSP++ P+ NNPLE
Sbjct: 32  SSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTNNPLE 91

Query: 80  PVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFAT 139
           PVI  F+ WS KAET+ARN+WHNLKTGPS+SE AWGKVNLTAKAIT+GGFESLF+QIF T
Sbjct: 92  PVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGT 151

Query: 140 DPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPL 199
           +PNE LKKTFACYLSTTTGPVAGT+YLS ARVAFCSDRPL FTAPSGQE+WSYY+V++PL
Sbjct: 152 EPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPL 211

Query: 200 ANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYR 252
           AN+++VNPV +KE   +KY+++ TV+GH+FWFMGFVN+EKAT+HLL S+S+++
Sbjct: 212 ANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSDFQ 264

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/196 (42%), Positives = 124/196 (63%), Gaps = 11/196 (5%)

Query: 63  PYVEYSPI---DKPSNNPLEPVIHAFNNW-------STKAETIARNIWHNLKTGPSVSEA 112
           PY+  SP    D    + +E V      W       + K E++A N W +L+T PS ++A
Sbjct: 97  PYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADA 156

Query: 113 AWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVA 172
           A G++  + K   EGG+E +F+Q F TDP E+L  +FACYLST+ GPV G LY+S+A++A
Sbjct: 157 AMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLA 216

Query: 173 FCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFM 232
           +CSD PL +     Q  WSYYKV+IPL  + +VNP     N ++KY+++++V+ HEFWFM
Sbjct: 217 YCSDNPLSYKN-GDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFM 275

Query: 233 GFVNFEKATNHLLNSL 248
           GF+N++ A   L +SL
Sbjct: 276 GFLNYDGAVTSLQDSL 291

Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/196 (44%), Positives = 123/196 (62%), Gaps = 11/196 (5%)

Query: 63  PYVEYSPIDKPSNNPLEPVIHAFNNW-------STKAETIARNIWHNLKTGPSVSEAAWG 115
           PYV  SP  +   N ++ V      W       + KAE +A N W +LKTGPSV++AA  
Sbjct: 66  PYVSPSPAPR---NTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVS 122

Query: 116 KVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCS 175
           ++    K + EGG+E +FKQ F   P+EKL KT+ACYLST+ GPV G +YLST ++AF S
Sbjct: 123 RIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSS 182

Query: 176 DRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFV 235
           D PL +     Q  WSYYKV++P   + +VNP T + N SDKY+++++++ HEFWFMGFV
Sbjct: 183 DNPLSYKE-GEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFV 241

Query: 236 NFEKATNHLLNSLSEY 251
            +E A   L  ++  +
Sbjct: 242 TYESAVKSLQEAVQSH 257

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2

 Score =  144 bits (363), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 77/197 (39%), Positives = 112/197 (56%), Gaps = 33/197 (16%)

Query: 63  PYVEYSPI---DKPSNNPLEPVIHAFNNW-------STKAETIARNIW-HNLKTGPSVSE 111
           PYV  +P    D      +E V      W       + KAE++A N W H L+       
Sbjct: 56  PYVARAPTETSDASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR------- 108

Query: 112 AAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARV 171
           AA G++  + K + EGG+E +F+Q F T P E+L+ +FACYLST+ GPV G LY+STA++
Sbjct: 109 AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKL 168

Query: 172 AFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWF 231
           A+CSD  L               V+IPL  + SVNP     N ++KY+++++V+ HEFWF
Sbjct: 169 AYCSDTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWF 213

Query: 232 MGFVNFEKATNHLLNSL 248
           MGF+N+E A   L ++L
Sbjct: 214 MGFLNYEGAVTSLQDTL 230

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 119/207 (57%), Gaps = 14/207 (6%)

Query: 57  QQIYHQPYVEYSPI----DKPSNNPLE-PVIHAFNNWSTKAETIARN---------IWHN 102
           QQ+   P V+ SP     D  S N L+ P    F+  + K +++ R          +   
Sbjct: 8   QQLITFPAVKTSPAGYLPDPASINKLQIPTSSKFSFLTGKGKSMLRKKKNDSFTNGVRDQ 67

Query: 103 LKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAG 162
            K GP ++E    K++L A+ +  GG E ++K++F     EKL K + CYLSTT GP+AG
Sbjct: 68  DKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAG 127

Query: 163 TLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIV 222
            L++S+ ++AFCS+R +   +P G+    +YKV IPL  I+ VN        S KY+++V
Sbjct: 128 LLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVV 187

Query: 223 TVEGHEFWFMGFVNFEKATNHLLNSLS 249
           TV+G +FWFMGF++++KA N L  +LS
Sbjct: 188 TVDGFDFWFMGFLSYQKAFNCLEQALS 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 97/147 (65%)

Query: 104 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGT 163
           K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT G +AG 
Sbjct: 61  KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGL 120

Query: 164 LYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVT 223
           L++S+ ++AFCS+R +  T+P G     +YKV IPL  I+ VN     +  S +Y+++VT
Sbjct: 121 LFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVT 180

Query: 224 VEGHEFWFMGFVNFEKATNHLLNSLSE 250
           V+ ++FWFMGFV+++KA N L  +L+E
Sbjct: 181 VDNYDFWFMGFVSYQKAFNCLEKALNE 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1

 Score =  139 bits (349), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 97/159 (61%)

Query: 91  KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFA 150
           K +     +    K  P ++E    K++L A+ +  GG E +FK++F     EKL K + 
Sbjct: 55  KTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQ 114

Query: 151 CYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTL 210
           CYLSTT GP+AG L++S+ ++AFCS+R +   +P G     +YKV IPL  I  VN    
Sbjct: 115 CYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQN 174

Query: 211 KENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLS 249
            +  S KY+++VTV+G +FWFMGF++++KA N L  +LS
Sbjct: 175 TKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKALS 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2

 Score =  138 bits (348), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 96/146 (65%)

Query: 104 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGT 163
           K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT GP+AG 
Sbjct: 69  KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGL 128

Query: 164 LYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVT 223
           L++S+ ++AFCS+R +   +P G  +  +YKV IPL  I+ VN     +  S KY++IVT
Sbjct: 129 LFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVT 188

Query: 224 VEGHEFWFMGFVNFEKATNHLLNSLS 249
           ++  +FWFMGFV+++KA N L  +L+
Sbjct: 189 IDNFDFWFMGFVSYQKAFNCLEKALN 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1

 Score =  131 bits (329), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 111/203 (54%), Gaps = 9/203 (4%)

Query: 60  YHQPYVEY-SPIDKPSNNPLEPVIHAFN-------NWSTKAETIARNIWHNLKTGPSVSE 111
           Y  PYV   SP         + V+   N       + + KAE +   +  +LK  PS+S+
Sbjct: 27  YDNPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISD 86

Query: 112 AAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARV 171
           AA  +++   K I EGG E +F++ F     EKL  +F CY+STT+GPV G +Y+S  R+
Sbjct: 87  AAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRI 146

Query: 172 AFCSDRPLCF-TAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFW 230
           AFCSD  +   ++  G    +YYKV++    ISS++  T     S++Y+ +VT +G EFW
Sbjct: 147 AFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFW 206

Query: 231 FMGFVNFEKATNHLLNSLSEYRA 253
           FMGFV++  A N L  +L   R 
Sbjct: 207 FMGFVSYIDAFNCLNKALLNSRC 229

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
255543156	252	conserved hypothetical protein [Ricinus	0.931	0.972	0.784	1e-111
225468805	285	PREDICTED: GEM-like protein 5 [Vitis vin	0.901	0.831	0.780	1e-110
327344121	232	putative PDF1-interacting protein 3, par	0.863	0.978	0.788	1e-105
270308994	261	GRAM domain-containing protein [Citrullu	0.904	0.911	0.744	1e-103
449484764	261	PREDICTED: GEM-like protein 5-like [Cucu	0.901	0.908	0.739	1e-103
147811055	264	hypothetical protein VITISV_011480 [Viti	0.882	0.878	0.742	1e-102
225425148	264	PREDICTED: GEM-like protein 5 [Vitis vin	0.882	0.878	0.742	1e-102
449468870	261	PREDICTED: GEM-like protein 5-like [Cucu	0.901	0.908	0.739	1e-102
297807337	287	hypothetical protein ARALYDRAFT_909273 [	0.893	0.818	0.725	1e-102
15240044	272	GEM-like protein 5 [Arabidopsis thaliana	0.882	0.852	0.721	1e-101

>gi|255543156|ref|XP_002512641.1| conserved hypothetical protein [Ricinus communis] gi|223548602|gb|EEF50093.1| conserved hypothetical protein [Ricinus communis]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/251 (78%), Positives = 212/251 (84%), Gaps = 6/251 (2%)

Query: 1   MTSTPDPEEKLSSTLTEAP--PSEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQ 58
           M STP      SS L + P   SEEERKKWGT+IMGAPA P  HPDNQKAASWNA   QQ
Sbjct: 1   MASTPHD----SSQLHQQPLLSSEEERKKWGTYIMGAPAAPPVHPDNQKAASWNAAEHQQ 56

Query: 59  IYHQPYVEYSPIDKPSNNPLEPVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVN 118
           IY QPY+ YSP++KPSNNP EPVIHAF  WS KAE IARNIWHNLKTGPSVSEAAWGKVN
Sbjct: 57  IYQQPYLVYSPVEKPSNNPFEPVIHAFTTWSKKAEDIARNIWHNLKTGPSVSEAAWGKVN 116

Query: 119 LTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRP 178
           LTAKAITEGGFESLFKQIF TDPNEKL KTFACYLST+TGPVAGT+YLSTARVAF SDRP
Sbjct: 117 LTAKAITEGGFESLFKQIFETDPNEKLTKTFACYLSTSTGPVAGTIYLSTARVAFSSDRP 176

Query: 179 LCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFE 238
           L F APSGQE WSYYKVMIPLA I SVNPV +KEN  +KY++I T++GHEFWFMGFVNFE
Sbjct: 177 LSFIAPSGQETWSYYKVMIPLAKIGSVNPVIMKENPPEKYIQIATIDGHEFWFMGFVNFE 236

Query: 239 KATNHLLNSLS 249
           KA +HLL+SLS
Sbjct: 237 KALHHLLDSLS 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468805|ref|XP_002263365.1| PREDICTED: GEM-like protein 5 [Vitis vinifera] gi|297738289|emb|CBI27490.3| unnamed protein product [Vitis vinifera]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/237 (78%), Positives = 211/237 (89%)

Query: 23  EERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPSNNPLEPVI 82
           E+ KKWGTH+MGAPAVP+ HPDNQKAA W A+  Q  YHQPYV+YSP++KPSNNP EPVI
Sbjct: 42  EDAKKWGTHVMGAPAVPTVHPDNQKAALWRADEHQHTYHQPYVQYSPVEKPSNNPFEPVI 101

Query: 83  HAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPN 142
           H FN+WS KAETI RNIWHNLK G SVSE AWGKVNLTAKAITEGGFESL+KQ FATDPN
Sbjct: 102 HTFNSWSRKAETIGRNIWHNLKMGHSVSETAWGKVNLTAKAITEGGFESLYKQTFATDPN 161

Query: 143 EKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANI 202
           EKLKKTFACYLST+TGPVAGTLYLSTA VAFCSDRPL FTAPSGQEAWSYYKV+IPL NI
Sbjct: 162 EKLKKTFACYLSTSTGPVAGTLYLSTACVAFCSDRPLSFTAPSGQEAWSYYKVVIPLGNI 221

Query: 203 SSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYRATGSAGR 259
            +VNPV ++EN+S+KY++I+T++GH+FWFMGFVNFEKA +HLL+S SE+RA  +A R
Sbjct: 222 GTVNPVVMRENSSEKYIQILTIDGHDFWFMGFVNFEKAVHHLLSSTSEFRAHENAVR 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327344121|gb|AEA50965.1| putative PDF1-interacting protein 3, partial [Gossypium barbadense]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/227 (78%), Positives = 202/227 (88%)

Query: 26  KKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPSNNPLEPVIHAF 85
           KKWGTH+MG+PA PSAHPDNQKAA WNA + QQIY  PYV YSP ++PS+NP EPVI+ F
Sbjct: 3   KKWGTHVMGSPAAPSAHPDNQKAALWNASDHQQIYELPYVVYSPAERPSHNPFEPVINMF 62

Query: 86  NNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKL 145
           N WS K E+IA NIWHNLKTGPSVSEAAWGK+NLTAKAITEGGFESLFKQIFATD +E+L
Sbjct: 63  NTWSRKTESIALNIWHNLKTGPSVSEAAWGKLNLTAKAITEGGFESLFKQIFATDTDERL 122

Query: 146 KKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSV 205
           KKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPL FTAPSGQE WSYYKVMIPLAN+ SV
Sbjct: 123 KKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLSFTAPSGQETWSYYKVMIPLANVGSV 182

Query: 206 NPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYR 252
           NPV +KEN  + Y+++VTV+GH+FWFMGFVNFEKA+ HLLNS+ + +
Sbjct: 183 NPVVMKENPVESYIQVVTVDGHDFWFMGFVNFEKASFHLLNSVQDSK 229

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270308994|dbj|BAI52950.1| GRAM domain-containing protein [Citrullus lanatus subsp. vulgaris]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/239 (74%), Positives = 209/239 (87%), Gaps = 1/239 (0%)

Query: 21  SEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPID-KPSNNPLE 79
           +E+E KKWGTHIMGAPA P+ HPDN KAA WNA  +QQIYH PYV+YSP+D +PS NP E
Sbjct: 23  TEDESKKWGTHIMGAPAAPNEHPDNYKAAFWNAAAQQQIYHHPYVQYSPVDHRPSTNPFE 82

Query: 80  PVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFAT 139
           PV+HAFN+WS KAE+IARNIWHNL+TGPS+S AAWGK+NLTAKAITEGGFESLFKQ FAT
Sbjct: 83  PVVHAFNSWSNKAESIARNIWHNLRTGPSMSGAAWGKLNLTAKAITEGGFESLFKQTFAT 142

Query: 140 DPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPL 199
           + NEKL K+FACYLST TGPVAGTLYLSTARV FCSDRPL FTAPSGQ +WSYYKVMIPL
Sbjct: 143 EVNEKLMKSFACYLSTATGPVAGTLYLSTARVGFCSDRPLYFTAPSGQPSWSYYKVMIPL 202

Query: 200 ANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYRATGSAG 258
           ++I++VNPVT+  N S +Y++I TV+G+EFWFMGFVNFEKAT++LLN++S + A  SA 
Sbjct: 203 SHIAAVNPVTMPGNPSARYLQIATVDGYEFWFMGFVNFEKATHYLLNAVSGHNAPPSAA 261

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484764|ref|XP_004156973.1| PREDICTED: GEM-like protein 5-like [Cucumis sativus]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/238 (73%), Positives = 209/238 (87%), Gaps = 1/238 (0%)

Query: 21  SEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPID-KPSNNPLE 79
           +E+E KKWGTH+MG PA P+ HPDNQKAA WNA ++QQI+H PYV+YSP+D +PS+NPLE
Sbjct: 23  TEDESKKWGTHVMGPPAAPTEHPDNQKAAFWNAASQQQIHHHPYVQYSPVDHRPSSNPLE 82

Query: 80  PVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFAT 139
           PV+HAFN+WS KAET ARNIWHNL+TG S+SEAAWGKVNLTAKAITEGGFESLFKQ FAT
Sbjct: 83  PVVHAFNSWSNKAETFARNIWHNLRTGQSMSEAAWGKVNLTAKAITEGGFESLFKQTFAT 142

Query: 140 DPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPL 199
           + NEKL K+FACYLST TGPVAGTLYLST RVAFCSDRPL FTAPSGQ +WSYYKVMIPL
Sbjct: 143 EVNEKLMKSFACYLSTATGPVAGTLYLSTVRVAFCSDRPLYFTAPSGQPSWSYYKVMIPL 202

Query: 200 ANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYRATGSA 257
           ++I+ VNPVT+  N S +Y+++ TV+GHEFWFMGFVNFEKAT++LL ++S + +  SA
Sbjct: 203 SHIAIVNPVTMPGNPSARYLQVTTVDGHEFWFMGFVNFEKATHNLLKAVSAHNSPPSA 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811055|emb|CAN61361.1| hypothetical protein VITISV_011480 [Vitis vinifera]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/233 (74%), Positives = 204/233 (87%), Gaps = 1/233 (0%)

Query: 21  SEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPSNNPLEP 80
           S E+ KKWGTH+MG PAVP+ HPDNQKAA W  ++ QQIYHQPY++++P++KP NNP EP
Sbjct: 31  SGEDTKKWGTHVMGPPAVPTVHPDNQKAAMWKGDH-QQIYHQPYLQFAPVEKPRNNPFEP 89

Query: 81  VIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATD 140
           VIH+FN+WS KAE IARNIWHNLK G SVSE A GKVNL AKA+T GGFESL+KQ FATD
Sbjct: 90  VIHSFNSWSRKAEIIARNIWHNLKMGHSVSETACGKVNLRAKAMTRGGFESLYKQTFATD 149

Query: 141 PNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLA 200
           PNE+LKKTFACYLST+TG VAGTLYLSTAR+AFCSDRPL FTAPSGQ AWSYYKV+IPL 
Sbjct: 150 PNERLKKTFACYLSTSTGHVAGTLYLSTARLAFCSDRPLSFTAPSGQGAWSYYKVVIPLG 209

Query: 201 NISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYRA 253
           NI +VNPVT++EN S+KY++I T++GH+FWF GFVNFEKAT HLL+ +SE+RA
Sbjct: 210 NIGTVNPVTMRENPSEKYIQIHTIDGHDFWFTGFVNFEKATQHLLSIVSEFRA 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425148|ref|XP_002263369.1| PREDICTED: GEM-like protein 5 [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/233 (74%), Positives = 203/233 (87%), Gaps = 1/233 (0%)

Query: 21  SEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPSNNPLEP 80
           S E+ KKWGTH+MG PAVP+ HPDNQKAA W  ++ QQIYHQPY++++P++KP NNP EP
Sbjct: 31  SGEDTKKWGTHVMGPPAVPTVHPDNQKAAMWKGDH-QQIYHQPYLQFAPVEKPRNNPFEP 89

Query: 81  VIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATD 140
           VIH FN+WS KAE IARNIWHNLK G SVSE A GKVNL AKA+T GGFESL+KQ FATD
Sbjct: 90  VIHTFNSWSRKAEIIARNIWHNLKMGHSVSETACGKVNLRAKAMTRGGFESLYKQTFATD 149

Query: 141 PNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLA 200
           PNE+LKKTFACYLST+TG VAGTLYLSTAR+AFCSDRPL FTAPSGQ AWSYYKV+IPL 
Sbjct: 150 PNERLKKTFACYLSTSTGHVAGTLYLSTARLAFCSDRPLSFTAPSGQGAWSYYKVVIPLG 209

Query: 201 NISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYRA 253
           NI +VNPVT++EN S+KY++I T++GH+FWF GFVNFEKAT HLL+ +SE+RA
Sbjct: 210 NIGTVNPVTMRENPSEKYIQIHTIDGHDFWFTGFVNFEKATQHLLSIVSEFRA 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468870|ref|XP_004152144.1| PREDICTED: GEM-like protein 5-like [Cucumis sativus]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/238 (73%), Positives = 208/238 (87%), Gaps = 1/238 (0%)

Query: 21  SEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPID-KPSNNPLE 79
           +E+E KKWGTH+MG PA P+ HPDNQKAA WNA ++QQI+H PYV+YSP+D +PS+NPLE
Sbjct: 23  TEDESKKWGTHVMGPPAAPTEHPDNQKAAFWNAASQQQIHHHPYVQYSPVDHRPSSNPLE 82

Query: 80  PVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFAT 139
           PV+HAFN+WS KAET ARNIWHN KTG S+SEAAWGKVNLTAKAITEGGFESLFKQ FAT
Sbjct: 83  PVVHAFNSWSNKAETFARNIWHNRKTGQSMSEAAWGKVNLTAKAITEGGFESLFKQTFAT 142

Query: 140 DPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPL 199
           + NEKL K+FACYLST TGPVAGTLYLST RVAFCSDRPL FTAPSGQ +WSYYKVMIPL
Sbjct: 143 EVNEKLMKSFACYLSTATGPVAGTLYLSTVRVAFCSDRPLYFTAPSGQPSWSYYKVMIPL 202

Query: 200 ANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYRATGSA 257
           ++I+ VNPVT+  N S +Y+++ TV+GHEFWFMGFVNFEKAT++LL ++S + +  SA
Sbjct: 203 SHIAIVNPVTMPGNPSARYLQVTTVDGHEFWFMGFVNFEKATHNLLKAVSAHNSPPSA 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807337|ref|XP_002871552.1| hypothetical protein ARALYDRAFT_909273 [Arabidopsis lyrata subsp. lyrata] gi|297317389|gb|EFH47811.1| hypothetical protein ARALYDRAFT_909273 [Arabidopsis lyrata subsp. lyrata]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/237 (72%), Positives = 205/237 (86%), Gaps = 2/237 (0%)

Query: 26  KKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPSNNPLEPVIHAF 85
           KKWGTH+MGAPA P AHPDNQ+AA+W A + QQ  +QPYV YSP++  +NNPLEPVI  F
Sbjct: 43  KKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVENHNNNPLEPVIGMF 102

Query: 86  NNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKL 145
           + WS KAET+ARN+WHNLKTGPS+SE AWGKVNLTAKAITEGGFESLF+QIF T+PNEKL
Sbjct: 103 HTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITEGGFESLFRQIFGTEPNEKL 162

Query: 146 KKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSV 205
           KKTFACYLSTTTGPVAGTLYLS ARVAFCSDRPL FTAPSGQE+WSYY+V+IPL N+++V
Sbjct: 163 KKTFACYLSTTTGPVAGTLYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVIPLGNVATV 222

Query: 206 NPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYRATGSAGRVGD 262
           NPV +KE   +KY+++ TV+GH+FWFMGFVN+EKAT+HLL S+S+ +   + G V D
Sbjct: 223 NPVVVKETPPEKYIQVTTVDGHDFWFMGFVNYEKATHHLLTSVSDSQT--AHGSVSD 277

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240044|ref|NP_196824.1| GEM-like protein 5 [Arabidopsis thaliana] gi|75181135|sp|Q9LYV6.1|GEML5_ARATH RecName: Full=GEM-like protein 5 gi|7529275|emb|CAB86627.1| ABA-responsive protein-like [Arabidopsis thaliana] gi|38454154|gb|AAR20771.1| At5g13200 [Arabidopsis thaliana] gi|46402484|gb|AAS92344.1| At5g13200 [Arabidopsis thaliana] gi|110738428|dbj|BAF01140.1| ABA-responsive protein - like [Arabidopsis thaliana] gi|332004480|gb|AED91863.1| GEM-like protein 5 [Arabidopsis thaliana]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 168/233 (72%), Positives = 206/233 (88%), Gaps = 1/233 (0%)

Query: 21  SEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPS-NNPLE 79
           S  ++KKWGTH+MGAPA P AHPDNQ+AA+W A + QQ  +QPYV YSP++ P+ NNPLE
Sbjct: 32  SSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTNNPLE 91

Query: 80  PVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFAT 139
           PVI  F+ WS KAET+ARN+WHNLKTGPS+SE AWGKVNLTAKAIT+GGFESLF+QIF T
Sbjct: 92  PVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGT 151

Query: 140 DPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPL 199
           +PNE LKKTFACYLSTTTGPVAGT+YLS ARVAFCSDRPL FTAPSGQE+WSYY+V++PL
Sbjct: 152 EPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPL 211

Query: 200 ANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYR 252
           AN+++VNPV +KE   +KY+++ TV+GH+FWFMGFVN+EKAT+HLL S+S+++
Sbjct: 212 ANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSDFQ 264

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
TAIR|locus:2183901	272	AT5G13200 "AT5G13200" [Arabido	0.912	0.882	0.710	5.2e-97
TAIR|locus:505006267	299	GEM "AT2G22475" [Arabidopsis t	0.882	0.775	0.395	5e-44
TAIR|locus:2032185	259	FIP1 "AT1G28200" [Arabidopsis	0.783	0.795	0.417	5.7e-43
TAIR|locus:2166806	219	AT5G23370 "AT5G23370" [Arabido	0.733	0.881	0.371	2.6e-31
TAIR|locus:2166791	210	AT5G23360 "AT5G23360" [Arabido	0.737	0.923	0.37	2.6e-31
TAIR|locus:2150823	222	AT5G08350 "AT5G08350" [Arabido	0.604	0.716	0.402	3e-30
TAIR|locus:2133387	233	AT4G01600 "AT4G01600" [Arabido	0.733	0.828	0.366	9.1e-29

TAIR|locus:2183901 AT5G13200 "AT5G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
 Identities = 172/242 (71%), Positives = 210/242 (86%)

Query:    17 EAPPSEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPS-N 75
             E   S  ++KKWGTH+MGAPA P AHPDNQ+AA+W A + QQ  +QPYV YSP++ P+ N
Sbjct:    28 EPSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTN 87

Query:    76 NPLEPVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQ 135
             NPLEPVI  F+ WS KAET+ARN+WHNLKTGPS+SE AWGKVNLTAKAIT+GGFESLF+Q
Sbjct:    88 NPLEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQ 147

Query:   136 IFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKV 195
             IF T+PNE LKKTFACYLSTTTGPVAGT+YLS ARVAFCSDRPL FTAPSGQE+WSYY+V
Sbjct:   148 IFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRV 207

Query:   196 MIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYR-AT 254
             ++PLAN+++VNPV +KE   +KY+++ TV+GH+FWFMGFVN+EKAT+HLL S+S+++ A 
Sbjct:   208 VVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSDFQTAH 267

Query:   255 GS 256
             GS
Sbjct:   268 GS 269

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:505006267 GEM "AT2G22475" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 96/243 (39%), Positives = 140/243 (57%)

Query:    13 STLTEAPPSEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDK 72
             ST  +AP       K   H        S  PD + A+S +A +   I   P  E S  D 
Sbjct:    53 STPVKAPSRTSSGSKKSVHWSPELVSGSQEPDQKAASSSSAGSNPYIARSP-AETS--DA 109

Query:    73 PSNNPLEPVIHAFNNW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAIT 125
                + +E V      W       + K E++A N W +L+T PS ++AA G++  + K   
Sbjct:   110 SLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFA 169

Query:   126 EGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPS 185
             EGG+E +F+Q F TDP E+L  +FACYLST+ GPV G LY+S+A++A+CSD PL +    
Sbjct:   170 EGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKN-G 228

Query:   186 GQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLL 245
              Q  WSYYKV+IPL  + +VNP     N ++KY+++++V+ HEFWFMGF+N++ A   L 
Sbjct:   229 DQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQ 288

Query:   246 NSL 248
             +SL
Sbjct:   289 DSL 291

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010482 "regulation of epidermal cell division" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2032185 FIP1 "AT1G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 93/223 (41%), Positives = 131/223 (58%)

Query:    36 PAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPSNNPLEPVIHAFNNW------- 88
             P  P   P    A +  AE+       PYV  SP  +   N ++ V      W       
Sbjct:    45 PPPPQPIPTGAAATTMPAESN------PYVSPSPAPR---NTMDSVKDTLGKWGKMAADA 95

Query:    89 STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKT 148
             + KAE +A N W +LKTGPSV++AA  ++    K + EGG+E +FKQ F   P+EKL KT
Sbjct:    96 TKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKT 155

Query:   149 FACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPV 208
             +ACYLST+ GPV G +YLST ++AF SD PL +     Q  WSYYKV++P   + +VNP 
Sbjct:   156 YACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGE-QTLWSYYKVVLPANQLKAVNPS 214

Query:   209 TLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEY 251
             T + N SDKY+++++++ HEFWFMGFV +E A   L  ++  +
Sbjct:   215 TSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAVQSH 257

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:2166806 AT5G23370 "AT5G23370" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 77/207 (37%), Positives = 119/207 (57%)

Query:    57 QQIYHQPYVEYSPI----DKPSNNPLE-PVIHAFNNWSTKAETIARN---------IWHN 102
             QQ+   P V+ SP     D  S N L+ P    F+  + K +++ R          +   
Sbjct:     8 QQLITFPAVKTSPAGYLPDPASINKLQIPTSSKFSFLTGKGKSMLRKKKNDSFTNGVRDQ 67

Query:   103 LKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAG 162
              K GP ++E    K++L A+ +  GG E ++K++F     EKL K + CYLSTT GP+AG
Sbjct:    68 DKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAG 127

Query:   163 TLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIV 222
              L++S+ ++AFCS+R +   +P G+    +YKV IPL  I+ VN        S KY+++V
Sbjct:   128 LLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVV 187

Query:   223 TVEGHEFWFMGFVNFEKATNHLLNSLS 249
             TV+G +FWFMGF++++KA N L  +LS
Sbjct:   188 TVDGFDFWFMGFLSYQKAFNCLEQALS 214

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166791 AT5G23360 "AT5G23360" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 74/200 (37%), Positives = 115/200 (57%)

Query:    57 QQIYHQPYVEYSPI----DKPSNNPLE-PVIHAFNNWSTK-AETIARNIWHNLKTGPSVS 110
             QQ+   P V  +P+    D  S N L+ P     +    K  ++         K GP ++
Sbjct:     8 QQVIAFPAVNTAPVGYLPDPASINKLQIPTSSKVSMLQKKKTDSFTNGARDQDKLGPKLT 67

Query:   111 EAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTAR 170
             E    K++L AK +  GG E ++K++F     EKL K + CYLSTT G +AG L++S+ +
Sbjct:    68 ETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKK 127

Query:   171 VAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFW 230
             +AFCS+R +  T+P G     +YKV IPL  I+ VN     +  S +Y+++VTV+ ++FW
Sbjct:   128 IAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFW 187

Query:   231 FMGFVNFEKATNHLLNSLSE 250
             FMGFV+++KA N L  +L+E
Sbjct:   188 FMGFVSYQKAFNCLEKALNE 207

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2150823 AT5G08350 "AT5G08350" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 64/159 (40%), Positives = 97/159 (61%)

Query:    91 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFA 150
             K +     +    K  P ++E    K++L A+ +  GG E +FK++F     EKL K + 
Sbjct:    55 KTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQ 114

Query:   151 CYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTL 210
             CYLSTT GP+AG L++S+ ++AFCS+R +   +P G     +YKV IPL  I  VN    
Sbjct:   115 CYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQN 174

Query:   211 KENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLS 249
              +  S KY+++VTV+G +FWFMGF++++KA N L  +LS
Sbjct:   175 TKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKALS 213

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2133387 AT4G01600 "AT4G01600" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 74/202 (36%), Positives = 110/202 (54%)

Query:    60 YHQPYVEY-SPIDKPSNNPLEPVIHAFNNW-------STKAETIARNIWHNLKTGPSVSE 111
             Y  PYV   SP         + V+   N         + KAE +   +  +LK  PS+S+
Sbjct:    27 YDNPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISD 86

Query:   112 AAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARV 171
             AA  +++   K I EGG E +F++ F     EKL  +F CY+STT+GPV G +Y+S  R+
Sbjct:    87 AAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRI 146

Query:   172 AFCSDRPLCF-TAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFW 230
             AFCSD  +   ++  G    +YYKV++    ISS++  T     S++Y+ +VT +G EFW
Sbjct:   147 AFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFW 206

Query:   231 FMGFVNFEKATNHLLNSLSEYR 252
             FMGFV++  A N L  +L   R
Sbjct:   207 FMGFVSYIDAFNCLNKALLNSR 228


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.127   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      263       263   0.00091  114 3  11 23  0.40    34
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  224 KB (2122 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.77u 0.10s 22.87t   Elapsed:  00:00:01
  Total cpu time:  22.77u 0.10s 22.87t   Elapsed:  00:00:01
  Start:  Mon May 20 18:13:51 2013   End:  Mon May 20 18:13:52 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYV6	GEML5_ARATH	No assigned EC number	0.7210	0.8821	0.8529	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	263
cd13222	127	cd13222, PH-GRAM_GEM, GLABRA 2 expression modulato	7e-87
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	2e-15
pfam02893	60	pfam02893, GRAM, GRAM domain	4e-12
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	9e-10
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	2e-07

>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  253 bits (650), Expect = 7e-87
 Identities = 78/127 (61%), Positives = 97/127 (76%)

Query: 124 ITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTA 183
           + EGG E +F+Q F   P EKL K   CYLSTT GPVAGTL++STA+VAFCSDRPL FT+
Sbjct: 1   LQEGGVEKVFRQTFGVGPGEKLLKASQCYLSTTAGPVAGTLFISTAKVAFCSDRPLSFTS 60

Query: 184 PSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNH 243
           PSGQ   SYYKV+IPL  I +VNP    +N S+KY++IVTV+G EFWFMGFVN++KA  +
Sbjct: 61  PSGQLVRSYYKVVIPLRKIKAVNPSENVKNPSEKYIQIVTVDGFEFWFMGFVNYQKAFKY 120

Query: 244 LLNSLSE 250
           L  +LS+
Sbjct: 121 LQQALSQ 127

GEM interacts with CDT1, a pre-replication complex component that is involved in DNA replication, and with TTG1 (Transparent Testa GLABRA 1), a transcriptional regulator of epidermal cell fate. GEM controls the level of histone H3K9 methylation at the promoters of the GLABRA 2 and CAPRICE (CPC) genes, which are essential for epidermis patterning. GEM also regulates cell division in different root cell types. GEM regulates proliferation-differentiation decisions by integrating DNA replication, cell division and transcriptional controls. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 127

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 68.8 bits (169), Expect = 2e-15
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 12/69 (17%)

Query: 141 PNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLA 200
             EKL   ++CYLS T GPV G LY+S  R+ F S+ P               KV+IPLA
Sbjct: 4   EEEKLIADYSCYLSRT-GPVQGRLYISNYRLCFRSNLPG-----------KLTKVVIPLA 51

Query: 201 NISSVNPVT 209
           +I+ +   T
Sbjct: 52  DITRIEKST 60

Length = 60

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 59.6 bits (145), Expect = 4e-12
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 11/69 (15%)

Query: 141 PNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLA 200
           P EKL   ++CYL     PV G LYL+  R+ F SD+        G        ++IPLA
Sbjct: 3   PEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKF-------GDLT----VLVIPLA 51

Query: 201 NISSVNPVT 209
           +I  V    
Sbjct: 52  DIERVEKEK 60

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 54.2 bits (131), Expect = 9e-10
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 19/101 (18%)

Query: 143 EKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANI 202
           EK   T+ C      GPV GTLYL+  R+ F S            E  S  ++ +PL  I
Sbjct: 2   EKKDVTYICPFHV--GPVEGTLYLTNYRLYFKSK-----------ERDSPTELDVPLGVI 48

Query: 203 SSVNPV---TLKENASDKYMKIVTVEGHEFWFMGFVNFEKA 240
           S V  V   +  EN+    ++I   +        F   + +
Sbjct: 49  SRVEKVGGSSSGENS--YGLEITCKD-MRNLRFAFKQEDHS 86

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 18/104 (17%)

Query: 133 FKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSY 192
           F++ FA   +EKL   +  YL     PV G LY+S     F S  P            + 
Sbjct: 3   FRKHFALPESEKLLAYYYAYLQRVL-PVYGKLYISDNYFCFRSLLP-----------GTR 50

Query: 193 YKVMIPLANISSVNPVTLKENASD-KYMKIV-TVEGHEFWFMGF 234
            K+++PL +I +V     KE      Y  +V  + GHE  F  F
Sbjct: 51  TKMILPLKDIENVE----KEKGFRFGYSGLVIVIRGHEELFFEF 90

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.34
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.17
PF14470	96	bPH_3: Bacterial PH domain	96.15
PF08498	67	Sterol_MT_C: Sterol methyltransferase C-terminal;	89.89
KOG4347	671	consensus GTPase-activating protein VRP [General f	80.78

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.34  E-value=7.7e-13  Score=95.52  Aligned_cols=66  Identities=30%  Similarity=0.565  Sum_probs=45.9

Q ss_pred             hhhhhccCCccchhccccceeeecCCCcceeeEEEecceEEEeeCCCeeeeCCCCCeeeeEEEEeeecCccccccc
Q 024728          132 LFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNP  207 (263)
Q Consensus       132 iFkQ~F~v~p~EkLlKa~aCYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnp  207 (263)
                      -|++.|...++|+|...|.|+|..+.+|+.|.||||+.+|+|+|+.+..-.          ++++|||..|..|..
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~----------~~~~ipl~~I~~i~k   67 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT----------CKFVIPLSDIKSIEK   67 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-----------EEEEEGGGEEEEEE
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce----------EEEEEEhHheeEEEE
Confidence            589999999999999999999999999999999999999999998765422          899999999998863

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.17  E-value=2.9e-11  Score=85.40  Aligned_cols=58  Identities=47%  Similarity=0.761  Sum_probs=50.6

Q ss_pred             CCccchhccccceeeecCCCcceeeEEEecceEEEeeCCCeeeeCCCCCeeeeEEEEeeecCccccccc
Q 024728          139 TDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNP  207 (263)
Q Consensus       139 v~p~EkLlKa~aCYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnp  207 (263)
                      ..++|+|...|.|||+ +.+|+.|.||||+.+++|+|+.+-..+          .+++|||+.|.+|+.
T Consensus         2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~----------~~~~ipl~~I~~i~k   59 (61)
T smart00568        2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT----------PKVVIPLADITRIEK   59 (61)
T ss_pred             cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee----------EEEEEEHHHeeEEEE
Confidence            4689999999999999 679999999999999999997655422          299999999999874

>PF14470 bPH_3: Bacterial PH domain

Probab=96.15  E-value=0.047  Score=40.53  Aligned_cols=94  Identities=17%  Similarity=0.174  Sum_probs=66.7

Q ss_pred             CccchhccccceeeecCCCcceeeEEEecceEEEeeCCCeeeeCCCCCeeeeEEEEeeecCccccccccccccCcCCceE
Q 024728          140 DPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYM  219 (263)
Q Consensus       140 ~p~EkLlKa~aCYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~nPseKYI  219 (263)
                      .+||+.+-...|.+-...+.-.|+|+++++||-||+-..+.     |     .....||+++|.+|+-....   -...|
T Consensus         2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~-----~-----~~~~~i~y~~I~~v~~~~g~---~~~~i   68 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG-----G-----KKFESIPYDDITSVSFKKGI---LGGKI   68 (96)
T ss_pred             cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC-----C-----ceEEEEEhhheEEEEEEccc---cccEE
Confidence            58999999999988877888999999999999999873332     1     24589999999999976433   44668


Q ss_pred             EEEEecCceeeeeecccHHHHHHHHHHHHh
Q 024728          220 KIVTVEGHEFWFMGFVNFEKATNHLLNSLS  249 (263)
Q Consensus       220 qIVTvD~~eFWFMGFvnY~KA~k~Lq~Als  249 (263)
                      .|.| ++..+=| +.+. .+-++-+-+.|+
T Consensus        69 ~i~~-~~~~~~i-~~i~-k~~~~~~~~~i~   95 (96)
T PF14470_consen   69 TIET-NGEKIKI-DNIQ-KGDVKEFYEYIK   95 (96)
T ss_pred             EEEE-CCEEEEE-EEcC-HHHHHHHHHHHh
Confidence            8888 5544444 4443 233344444443

>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []

Probab=89.89  E-value=0.21  Score=38.13  Aligned_cols=53  Identities=13%  Similarity=0.148  Sum_probs=47.8

Q ss_pred             HhhhcccchhhHHhhhhhhhccCcchhHHhhhhhhhhhHHHhccCcchhhhhh
Q 024728           84 AFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQI  136 (263)
Q Consensus        84 ~~n~~grkae~~a~~i~~hlk~gpsiseta~GKlslGaKil~eGG~ekiFkQ~  136 (263)
                      +|+++||..-...=++-|-|++.|+-+-.+..-|..+|.-|.+||-++||--.
T Consensus         6 r~t~~Gr~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPM   58 (67)
T PF08498_consen    6 RMTWLGRFITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPM   58 (67)
T ss_pred             eccHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCch
Confidence            46788888877788889999999999999999999999999999999999643

; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=80.78  E-value=1.9  Score=45.23  Aligned_cols=97  Identities=25%  Similarity=0.309  Sum_probs=74.9

Q ss_pred             hhccCCccchhccccceeeecCCC--cceeeEEEecceEEEeeCCCeeeeCCCCCeeeeEEEEeeecCcccccccccccc
Q 024728          135 QIFATDPNEKLKKTFACYLSTTTG--PVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKE  212 (263)
Q Consensus       135 Q~F~v~p~EkLlKa~aCYLSTtaG--PVaG~LfiSt~kvAFcSdrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~  212 (263)
                      -.|...  |+|.-.-.|=|-|..-  -..|-||+||..++|.||-+=.            -++++||.-|+.|.-.. ..
T Consensus        14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~------------c~~~~Pl~~vr~ve~~~-~s   78 (671)
T KOG4347|consen   14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWL------------CSFITPLLAVRSVERLD-DS   78 (671)
T ss_pred             ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCccc------------ceEeeehhhhhhhhccC-cc
Confidence            456655  9999999999999866  6899999999999999997533            46899999999998444 11


Q ss_pred             CcCCceEEEEEecCceeeeeecccHHHHHHHHHH
Q 024728          213 NASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLN  246 (263)
Q Consensus       213 nPseKYIqIVTvD~~eFWFMGFvnY~KA~k~Lq~  246 (263)
                      +--..=|-+.|-.+-.|-|-|+..=++.+.-+..
T Consensus        79 s~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~~~  112 (671)
T KOG4347|consen   79 SLFTQLISLFTSNMVGMRFGGLTERLKLLSKLHL  112 (671)
T ss_pred             ccchhhhHHhhcCcceEEecchhhHHHHHHHHhc
Confidence            2222336678889999999999877777665553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	92.77
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	91.45

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=92.77  E-value=0.36  Score=47.35  Aligned_cols=103  Identities=18%  Similarity=0.192  Sum_probs=63.1

Q ss_pred             ccCCccchhccccce--eeecCCCcceeeEEEecceEEEeeCCCeeeeCCCCCeeeeEEEEeeecCccccccccccccCc
Q 024728          137 FATDPNEKLKKTFAC--YLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENA  214 (263)
Q Consensus       137 F~v~p~EkLlKa~aC--YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~nP  214 (263)
                      |...|||.++..-.-  |+..-.|++.|+|||++.|+.|++...      + .    .+.+-|||..|..|.........
T Consensus         7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~------~-~----~~~~~iPL~~I~~vek~~~~s~~   75 (528)
T 1zsq_A            7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------D-P----PFVLDASLGVINRVEKIGGASSR   75 (528)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------S-S----CEEEEEEGGGEEEEEEECCTTCC
T ss_pred             CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC------C-c----cEEEEeeccceEEEEEcCCCCcC
Confidence            567899999865211  555557899999999999999999521      1 1    24578999888777643211111


Q ss_pred             C--CceEEEEEecCceeeeeecccHHHHHHHHHHHHhhh
Q 024728          215 S--DKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEY  251 (263)
Q Consensus       215 s--eKYIqIVTvD~~eFWFMGFvnY~KA~k~Lq~Als~~  251 (263)
                      .  --.|+|..-|- .++=.+|-.=+...+.+-++|+..
T Consensus        76 ~~~~~~l~I~CKDf-r~~~f~f~~~~~~~~~v~~~L~~~  113 (528)
T 1zsq_A           76 GENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLMKY  113 (528)
T ss_dssp             STTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHHHH
T ss_pred             CCCCceEEEEccCC-eEEEEEecCchHHHHHHHHHHHHH
Confidence            1  12477666654 444445654333344455666554

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=91.45  E-value=0.59  Score=47.18  Aligned_cols=122  Identities=16%  Similarity=0.167  Sum_probs=63.0

Q ss_pred             hhhhhHHHhccCcchhhhhhccCCccchhccccc-e-eeecCCCcceeeEEEecceEEEeeCCCeeeeCCCCCeeeeEEE
Q 024728          117 VNLTAKAITEGGFESLFKQIFATDPNEKLKKTFA-C-YLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYK  194 (263)
Q Consensus       117 lslGaKil~eGG~ekiFkQ~F~v~p~EkLlKa~a-C-YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~Gq~~~~yYK  194 (263)
                      +.+.-++|+.|-.. -=.--|...|||.+...-. . |+..-.|++.|+|||++.|+.|++...      + .    .+.
T Consensus        60 ~~~~~~~~~~~~~~-~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~------~-~----~~~  127 (657)
T 1lw3_A           60 FSPDLRVLRESNKL-AEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------D-P----PFV  127 (657)
T ss_dssp             ------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------S-S----CEE
T ss_pred             hhhhhhhhhccccc-ccCCCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC------C-c----ceE
Confidence            34444455554322 1123466799999995421 1 444446899999999999999998521      1 1    245


Q ss_pred             EeeecCccccccccccccCcCC--ceEEEEEecCceeeeeecccHHHHHHHHHHHHhhh
Q 024728          195 VMIPLANISSVNPVTLKENASD--KYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEY  251 (263)
Q Consensus       195 VvIPL~kik~Vnps~n~~nPse--KYIqIVTvD~~eFWFMGFvnY~KA~k~Lq~Als~~  251 (263)
                      +-|||..|..|..........+  -.|+|..-| +.++=.+|-.=+...+.+-++|...
T Consensus       128 ~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKD-fR~~~f~f~~~~~~~~~v~~~L~~~  185 (657)
T 1lw3_A          128 LDASLGVINRVEKIGGASSRGENSYGLETVCKD-IRNLRFAHKPEGRTRRSIFENLMKY  185 (657)
T ss_dssp             EEEEGGGEEEEEEECCTTCCSTTCSEEEEEETT-TEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred             EEecccceEEEEecCCCcccCCCCceEEEEecC-CcEEEEEeCCccchHHHHHHHHHHH
Confidence            6899988888775322111111  236666655 4444455654333234444555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	263
d1zsqa1	125	b.55.1.8 (A:74-198) Myotubularin-related protein 2	0.003

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 13/80 (16%)

Query: 141 PNEKLKKTF--ACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIP 198
           P E +K       Y+   TG V GTL ++  R+ F              E    + +   
Sbjct: 7   PGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYF-----------KSMERDPPFVLDAS 55

Query: 199 LANISSVNPVTLKENASDKY 218
           L  I+ V  +    +  +  
Sbjct: 56  LGVINRVEKIGGASSRGENS 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	96.31
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	91.29

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0029  Score=48.75  Aligned_cols=103  Identities=19%  Similarity=0.242  Sum_probs=64.7

Q ss_pred             CCccchhccc--cceeeecCCCcceeeEEEecceEEEeeCCCeeeeCCCCCeeeeEEEEeeecCccccccccccccC--c
Q 024728          139 TDPNEKLKKT--FACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKEN--A  214 (263)
Q Consensus       139 v~p~EkLlKa--~aCYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~n--P  214 (263)
                      ..|||.+.-.  -.=|+..-.||+-|+|||++-|+.|-++..      +.     .+.+-|||..|..|........  -
T Consensus         5 llpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~------~~-----~~~~~ipl~~I~~v~k~~~~~~~~~   73 (125)
T d1zsqa1           5 LLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------DP-----PFVLDASLGVINRVEKIGGASSRGE   73 (125)
T ss_dssp             CCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------SS-----CEEEEEEGGGEEEEEEECCTTCCST
T ss_pred             cCCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCC------Cc-----cEEEEeccceeeeeeecccccccCC
Confidence            3578876532  224566668999999999999999976431      11     1345799999988874433222  1


Q ss_pred             CCceEEEEEecCceeeeeecc-cHHHHHHHHHHHHhhhhhc
Q 024728          215 SDKYMKIVTVEGHEFWFMGFV-NFEKATNHLLNSLSEYRAT  254 (263)
Q Consensus       215 seKYIqIVTvD~~eFWFMGFv-nY~KA~k~Lq~Als~~~~~  254 (263)
                      .--.|+|+.-|---+=|. |. .- .--+.+.++|++.+-+
T Consensus        74 ~~~~L~I~CKDfr~~~f~-f~~e~-~~~~~v~~~L~~~a~P  112 (125)
T d1zsqa1          74 NSYGLETVCKDIRNLRFA-HKPEG-RTRRSIFENLMKYAFP  112 (125)
T ss_dssp             TCSEEEEEETTTEEEEEE-CCGGG-CCHHHHHHHHHHHSCT
T ss_pred             ccccEEEEeccCeEEEEE-EcCCc-cHHHHHHHHHHHhCcC
Confidence            223699999886655543 32 21 2235677788776543

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.33  Score=36.96  Aligned_cols=78  Identities=22%  Similarity=0.342  Sum_probs=54.7

Q ss_pred             ceeeEEEecceEEEeeCCCeeeeCCCCCeeeeEEEEeeecCccccccccccccCcCCceEEEEEecCceeeeeecccHHH
Q 024728          160 VAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEK  239 (263)
Q Consensus       160 VaG~LfiSt~kvAFcSdrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~eFWFMGFvnY~K  239 (263)
                      +.|+|||++.+|+|..+.+      +      --+|.|++..|+.-..+  .+..+.-=++||.-|+-.|=|- |.|+.-
T Consensus        20 ~~GtL~l~~d~l~W~p~~~------~------~~~v~~~~~~I~~~q~S--pe~s~Kv~Lkiv~~~~~s~~F~-Ftn~~~   84 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEGK------D------RFTISHMYADIKCQKIS--PEGKAKIQLQLVLHAGDTTNFH-FSNEST   84 (108)
T ss_dssp             CEEEEEECSSEEEEEESSC------S------SCSEEEETTTEEEEEEC--CTTCSSEEEEEEETTSCEEEEE-ECCTTT
T ss_pred             CCcEEEEEcCeEEEEcCCC------C------CceEEEEhhhhhceecC--CCCcccceeEEEEeCCCeEEEE-ECChHH
Confidence            6799999999999976532      1      13478999999876544  3445556699999998887774 888854


Q ss_pred             HH-------HHHHHHHhhhh
Q 024728          240 AT-------NHLLNSLSEYR  252 (263)
Q Consensus       240 A~-------k~Lq~Als~~~  252 (263)
                      |.       ..||++|..++
T Consensus        85 ~~~~Rd~iK~~Lq~~i~~~k  104 (108)
T d2rnrb1          85 AVKERDAVKDLLQQLLPKFK  104 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            42       34556665554