Citrus Sinensis ID: 024757

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQSFDSFNPSSDFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTIVRSDTSLSGRGRSKRSKATNSAANTTTWNWTSSESESGNSKQKRENHRQSSPIPEGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELRRQKELLRQQQLQQQQQQEEGQGQIYRHQRDFEVC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccHHHcccEEEccccccccccccccccccccHccccHHHHHHHHHHHHHccccccccHcccccccHHcccccccEEEc
Coil and Loop (DISEMBL)
mdiyglpsnntttqdlfriddlldfsndelftssssaatanttaiasdtdhlpqaqhqsfdsfnpssdftgdlcvpsddvaELEWLSQfvddscmdfpanslagtivrsdtslsgrgrskrskatnsaantttwnwtssesesgnskqkrenhrqsspipeggvrrcthcasektpqwrtgplgpktlcnacgvryksgrlvpeyrpassptfvltqhsnsHRKVLELRRQKELLRQQQLQQQQQQEEGQGQIYRHQRDFEVC
Flexible Loop (DISEMBL)
mdiyglpsnntttqdlFRIDDLLDFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQSFDSFNPSSDFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANslagtivrsdtslsgrgrskrskatnsaantttwnwtssesesgnskqkrenhrqsspipeggvrrcTHCASektpqwrtgplgpktlCNACGVRYKSGRLVPEYRPASsptfvltqhsnsHRKVLELRRQKELLRQQQLQQQQqqeegqgqiyRHQRDFEVC
Low Complexity Region (SEG)
MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFtssssaatanttaiasdtDHLPQAQHQSFDSFNPSSDFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTIVRSDTSLsgrgrskrskatnsaantttwnwtssesesGNSKQKRENHRQSSPIPEGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVlelrrqkellrqqqlqqqqqqeegqgqIYRHQRDFEVC
Disordered region (IsUnstruct)
**************DLFRIDDLLDFS******************************************FTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTIV*********************************************************************QWRTGPLGPKTLCNACGVRYKSGRLVPEY**********************************************************
Disordered Region (DISOPRED)
*DIY*********QDLFRIDDLLDFSNDE*******************************************************************************************************************************************HCASEKTPQWRTGPLGPKTLCNACGVRY******************************************************************C
Disordered Region (DISEMBL)
MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQSFDSFNPSSDFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTIVRSD********************TTTW***************************GGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELRRQKE*******************IYRHQRDFEVC
Disordered Region (DISPRO)
*DIYGLPSNNTTTQDLFRIDDLLDFS******************************************FTGDLCVPSDDVAELEWLSQFVDDSCM********************************************************************VRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHS*****V*ELRRQK*************************R*F**C
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQSFDSFNPSSDFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTIVRSDTSLSGRGRSKRSKATNSAANTTTWNWTSSESESGNSKQKRENHRQSSPIPEGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKxxxxxxxxxxxxxxxxxxxxxxxxGQGQIYRHQRDFEVC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
O49741	264	GATA transcription factor	yes	no	0.874	0.871	0.565	2e-62
O49743	240	GATA transcription factor	no	no	0.859	0.941	0.575	2e-59
O82632	308	GATA transcription factor	no	no	0.897	0.766	0.416	6e-48
P69781	331	GATA transcription factor	no	no	0.806	0.640	0.410	7e-43
O65515	238	GATA transcription factor	no	no	0.760	0.840	0.434	6e-37
Q8L4M6	269	GATA transcription factor	no	no	0.585	0.572	0.484	1e-34
Q6DBP8	303	GATA transcription factor	no	no	0.269	0.234	0.746	4e-29
Q8LAU9	274	GATA transcription factor	no	no	0.349	0.335	0.604	9e-29
Q8VZP4	308	GATA transcription factor	no	no	0.391	0.334	0.543	7e-28
Q9FH57	339	GATA transcription factor	no	no	0.262	0.203	0.739	3e-27

>sp|O49741|GATA2_ARATH GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1

 Score =  239 bits (610), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 151/267 (56%), Positives = 180/267 (67%), Gaps = 37/267 (13%)

Query: 1   MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQSF 60
           MD+YGL S +    D     DLLDFSN+++F++SSS  +   T+ +S     P  Q+ SF
Sbjct: 1   MDVYGLSSPDLLRID-----DLLDFSNEDIFSASSSGGSTAATSSSS----FPPPQNPSF 51

Query: 61  DSFN-PSS----DFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTI--VRSDTSL 113
              + PSS     F  D+CVPSDD A LEWLSQFVDDS  DFPAN L GT+  V+++TS 
Sbjct: 52  HHHHLPSSADHHSFLHDICVPSDDAAHLEWLSQFVDDSFADFPANPLGGTMTSVKTETSF 111

Query: 114 SGRGRSKRSKATNSAANTTTWNWTSSESE------SGNSKQKREN----------HRQSS 157
            G+ RSKRS+A    A T  W+    ESE      +   K K+E           H+ SS
Sbjct: 112 PGKPRSKRSRAPAPFAGT--WSPMPLESEHQQLHSAAKFKPKKEQSGGGGGGGGRHQSSS 169

Query: 158 P--IPEGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVL 215
                 GG+RRCTHCASEKTPQWRTGPLGPKTLCNACGVR+KSGRLVPEYRPASSPTFVL
Sbjct: 170 SETTEGGGMRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVL 229

Query: 216 TQHSNSHRKVLELRRQKELLRQ-QQLQ 241
           TQHSNSHRKV+ELRRQKE++RQ QQ+Q
Sbjct: 230 TQHSNSHRKVMELRRQKEVMRQPQQVQ 256

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.
Arabidopsis thaliana (taxid: 3702)

>sp|O49743|GATA4_ARATH GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1

 Score =  229 bits (584), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 134/233 (57%), Positives = 161/233 (69%), Gaps = 7/233 (3%)

Query: 1   MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQSF 60
           MD+YG+ S +    D     DLLDFSNDE+F+SSS+  ++  ++ AS  +        ++
Sbjct: 1   MDVYGMSSPDLLRID-----DLLDFSNDEIFSSSSTVTSSAASSAASSENPF-SFPSSTY 54

Query: 61  DSFNPSSDFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTIVRSDTSLSGRGRSK 120
            S    +DFT DLCVPSDD A LEWLS+FVDDS  DFPAN L  T VR + S +G+ RS+
Sbjct: 55  TSPTLLTDFTHDLCVPSDDAAHLEWLSRFVDDSFSDFPANPLTMT-VRPEISFTGKPRSR 113

Query: 121 RSKATNSAANTTTWNWTSSESESGNSKQKRENHRQSSPIPEGGVRRCTHCASEKTPQWRT 180
           RS+A   +   T    + SE     +K K +    +  +   G RRCTHCASEKTPQWRT
Sbjct: 114 RSRAPAPSVAGTWAPMSESELCHSVAKPKPKKVYNAESVTADGARRCTHCASEKTPQWRT 173

Query: 181 GPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELRRQKE 233
           GPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKV+ELRRQKE
Sbjct: 174 GPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKE 226

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O82632|GATA9_ARATH GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1

 Score =  191 bits (484), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 119/286 (41%), Positives = 157/286 (54%), Gaps = 50/286 (17%)

Query: 15  DLFRIDDLLDFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQSFDSFNPSSDFT---- 70
           D F +DDLLDFSND+           +++ +++ T           DS N SS FT    
Sbjct: 16  DSFVVDDLLDFSNDDGEVDDGLNTLPDSSTLSTGT---------LTDSSNSSSLFTDGTG 66

Query: 71  -GDLCVPSDDVAELEWLSQFVDDSCMDFPANSL-----------AGT------------- 105
             DL +P+DD+AELEWLS FV++S      + L            G+             
Sbjct: 67  FSDLYIPNDDIAELEWLSNFVEESFAGEDQDKLHLFSGLKNPQTTGSTLTHLIKPEPELD 126

Query: 106 -----IVRSDTSLSGRGRSKRSKATNSAANTTTWNWTSSESESGNSKQKRENHRQSSPIP 160
                I  S+ ++  + RSKRS++  S   +   +   S+  +   KQ+R   +  +   
Sbjct: 127 HQFIDIDESNVAVPAKARSKRSRSAASTWASRLLSLADSDETNPKKKQRRVKEQDFAGDM 186

Query: 161 E------GGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFV 214
           +      GG RRC HCA+EKTPQWRTGP+GPKTLCNACGVRYKSGRLVPEYRPASSPTFV
Sbjct: 187 DVDCGESGGGRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFV 246

Query: 215 LTQHSNSHRKVLELRRQKELLRQQQLQQQQQQEEGQGQIYRHQRDF 260
           + +HSNSHRKV+ELRRQKE +R + L  Q + E     I  +  DF
Sbjct: 247 MARHSNSHRKVMELRRQKE-MRDEHLLSQLRCENLLMDIRSNGEDF 291

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|P69781|GAT12_ARATH GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1

 Score =  174 bits (440), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 117/285 (41%), Positives = 146/285 (51%), Gaps = 73/285 (25%)

Query: 17  FRIDDLL-DFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQSFDS-FNPSSDFTGDLC 74
           F +DDLL DFSND+    +   A + TT   +D+ +   A   SF       + F+GDLC
Sbjct: 14  FAVDDLLVDFSNDDD-EENDVVADSTTTTTITDSSNFSAADLPSFHGDVQDGTSFSGDLC 72

Query: 75  VPSDDVA-ELEWLSQFVDDSCMDFPANSL------------------------AGTIVRS 109
           +PSDD+A ELEWLS  VD+S      + L                        +  I  +
Sbjct: 73  IPSDDLADELEWLSNIVDESLSPEDVHKLELISGFKSRPDPKSDTGSPENPNSSSPIFTT 132

Query: 110 DTSLSGRGRSKRSKATNSAANTTTWNWTSS------------------------------ 139
           D S+  + RSKRS+A          NW S                               
Sbjct: 133 DVSVPAKARSKRSRAA-------ACNWASRGLLKETFYDSPFTGETILSSQQHLSPPTSP 185

Query: 140 ---ESESGNSKQKRENHRQSSPI--PEGG---VRRCTHCASEKTPQWRTGPLGPKTLCNA 191
               +  G  +     HR+   +  PE G    RRC HCA++KTPQWRTGP+GPKTLCNA
Sbjct: 186 PLLMAPLGKKQAVDGGHRRKKDVSSPESGGAEERRCLHCATDKTPQWRTGPMGPKTLCNA 245

Query: 192 CGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELRRQKELLR 236
           CGVRYKSGRLVPEYRPA+SPTFVL +HSNSHRKV+ELRRQKE+ R
Sbjct: 246 CGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKEMSR 290

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O65515|GATA7_ARATH GATA transcription factor 7 OS=Arabidopsis thaliana GN=GATA7 PE=2 SV=1

 Score =  154 bits (389), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/237 (43%), Positives = 126/237 (53%), Gaps = 37/237 (15%)

Query: 17  FRIDDLLDFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQSFDS----FNPSSD---F 69
           F +DDLLD SN +    SSS+            D   + + +SF       +P  D   F
Sbjct: 11  FSVDDLLDLSNADTSLESSSSQRKE--------DEQEREKFKSFSDQSTRLSPPEDLLSF 62

Query: 70  TGDLCVPSDDVAELEWLSQFVDDS------CMDFPANSLAGTIVRSDTSLSGRGRSKRSK 123
            GD   P  D+ +LEWLS FV+DS        DFP N +A   VR    +  + RSKR +
Sbjct: 63  PGD--APVGDLEDLEWLSNFVEDSFSESYISSDFPVNPVASVEVRRQC-VPVKPRSKRRR 119

Query: 124 ATNSAANTTTWNWTS-SESESGNSKQKRENHRQSSPIPEGGV-------RRCTHCASEKT 175
                 N   W+  S S   S    ++++  RQ      GGV       R C+HC  +KT
Sbjct: 120 T-----NGRIWSMESPSPLLSTAVARRKKRGRQKVDASYGGVVQQQQLRRCCSHCGVQKT 174

Query: 176 PQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELRRQK 232
           PQWR GPLG KTLCNACGVR+KSGRL+PEYRPA SPTF    HSNSHRKVLELR  K
Sbjct: 175 PQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNEIHSNSHRKVLELRLMK 231

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4M6|GATA3_ARATH GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 105/163 (64%), Gaps = 9/163 (5%)

Query: 75  VPSDDVAELEWLSQFVDDSCMDFPANSLAGTIVRSDTSLS---GRGRSKRSKATNSAANT 131
           +P +DV ELEW+S+ VDD C     + L     ++  S S    + R+KRS+  NS   +
Sbjct: 93  LPDEDVEELEWVSRVVDD-CSSPEVSLLLTQTHKTKPSFSRIPVKPRTKRSR--NSLTGS 149

Query: 132 TTWNWTSSESESGNSKQKRENHRQSSPIPEGGVRRCTHCASEKTPQWRTGPLGPKTLCNA 191
             W   S+  +   ++Q R+  +++  + +   RRC+HC +  TPQWRTGP+GPKTLCNA
Sbjct: 150 RVWPLVSTNHQHAATEQLRKKKQETVLVFQ---RRCSHCGTNNTPQWRTGPVGPKTLCNA 206

Query: 192 CGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELRRQKEL 234
           CGVR+KSGRL PEYRPA SPTF    HSN HRKVLELR+ KEL
Sbjct: 207 CGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRKSKEL 249

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1

 Score =  128 bits (322), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 63/71 (88%)

Query: 161 EGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSN 220
           +G VR+CTHC + KTPQWR GP GPKTLCNACGVR++SGRLVPEYRPASSPTF+   HSN
Sbjct: 216 DGIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSN 275

Query: 221 SHRKVLELRRQ 231
           SHRK++E+RR+
Sbjct: 276 SHRKIIEMRRK 286

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAU9|GATA1_ARATH GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2

 Score =  127 bits (319), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 72/96 (75%), Gaps = 4/96 (4%)

Query: 136 WTSSESESGNSKQKRENHRQSSPIPEGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVR 195
           WT +E   G  ++K+     ++ +  G  R+C HC +EKTPQWR GP GPKTLCNACGVR
Sbjct: 169 WTGNEQ--GGIQKKKTMTVAAAALIMG--RKCQHCGAEKTPQWRAGPAGPKTLCNACGVR 224

Query: 196 YKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELRRQ 231
           YKSGRLVPEYRPA+SPTF    HSNSHRK++E+R+Q
Sbjct: 225 YKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQ 260

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZP4|GAT10_ARATH GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1

 Score =  124 bits (311), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 82/114 (71%), Gaps = 11/114 (9%)

Query: 126 NSAANTTTWNWTSSESESGNSKQKRE----NHRQSSPI----PEGGVRRCTHCASEKTPQ 177
           ++   + T  + SSE    ++K+KR+     H +SS +     +G VR CTHC +  TPQ
Sbjct: 174 STPGESVTEGYYSSEQ---HAKKKRKIHLITHTESSTLESSKSDGIVRICTHCETITTPQ 230

Query: 178 WRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELRRQ 231
           WR GP GPKTLCNACGVR+KSGRLVPEYRPASSPTF+ + HSNSHRK++E+R++
Sbjct: 231 WRQGPSGPKTLCNACGVRFKSGRLVPEYRPASSPTFIPSVHSNSHRKIIEMRKK 284

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH57|GATA5_ARATH GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 59/69 (85%)

Query: 165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRK 224
           R+C+HC  +KTPQWR GP+G KTLCNACGVRYKSGRL+PEYRPA SPTF    HSN HRK
Sbjct: 249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRK 308

Query: 225 VLELRRQKE 233
           V+E+RR+KE
Sbjct: 309 VIEMRRKKE 317

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
297734547	255	unnamed protein product [Vitis vinifera]	0.882	0.909	0.594	9e-71
225453508	270	PREDICTED: GATA transcription factor 2 [	0.897	0.874	0.548	2e-70
255541156	235	GATA transcription factor, putative [Ric	0.859	0.961	0.666	1e-68
15225399	264	GATA transcription factor 2 [Arabidopsis	0.874	0.871	0.565	9e-61
301133588	256	GATA type zinc finger protein [Brassica	0.882	0.906	0.578	2e-59
312282833	247	unnamed protein product [Thellungiella h	0.870	0.927	0.572	1e-58
37572447	256	AG-motif binding protein-3 [Nicotiana ta	0.942	0.968	0.505	2e-58
297824543	262	hypothetical protein ARALYDRAFT_903940 [	0.874	0.877	0.543	3e-58
15232355	240	GATA transcription factor 4 [Arabidopsis	0.859	0.941	0.575	9e-58
297817360	240	zinc finger family protein [Arabidopsis	0.790	0.866	0.591	4e-56

>gi|297734547|emb|CBI16598.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (696), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 161/271 (59%), Positives = 185/271 (68%), Gaps = 39/271 (14%)

Query: 1   MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFTSSSS---------AATANTTAIASDTDH 51
           MD+YGL      T D FRIDDLLDF+NDELF+S+++          A+ N +  AS    
Sbjct: 1   MDLYGL-----QTSDFFRIDDLLDFTNDELFSSTTTDSGNLPPPEIASGNRSLAASGNRD 55

Query: 52  LPQAQHQSFDSFNPSSDFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTIV-RSD 110
            P   H        S+DFT DLCVPSDDVAELEWLS FVDDS  DFP N LAGT++ R D
Sbjct: 56  QPNTFH--------SADFTDDLCVPSDDVAELEWLSNFVDDSFADFPENELAGTVMARPD 107

Query: 111 TSLSGRGRSKRSKATNSAANTTTWNWTSSESESGNSKQKRENHRQSSPIPEGGVRRCTHC 170
           +S  GR RSKRS+A+     +T   WTSS S S  S ++  +   +S     G R+CTHC
Sbjct: 108 SSFPGRTRSKRSRAS-----STNKVWTSSSSSSVISGERSSSSSPASS--PTGARKCTHC 160

Query: 171 ASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELRR 230
           ASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPA+SPTFVLTQHSNSHRKV+ELRR
Sbjct: 161 ASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRR 220

Query: 231 QKELLRQQQLQQQQQQEEGQGQIYRHQRDFE 261
           QKE+LRQQQ QQ         Q+Y H  DFE
Sbjct: 221 QKEILRQQQQQQ---------QLYHHHHDFE 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453508|ref|XP_002277959.1| PREDICTED: GATA transcription factor 2 [Vitis vinifera]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 163/297 (54%), Positives = 189/297 (63%), Gaps = 61/297 (20%)

Query: 1   MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFTSSSS---------AATANTTAIASDTDH 51
           MD+YGL      T D FRIDDLLDF+NDELF+S+++          A+ N +  AS    
Sbjct: 1   MDLYGL-----QTSDFFRIDDLLDFTNDELFSSTTTDSGNLPPPEIASGNRSLAASGNRD 55

Query: 52  LPQAQHQSFDSFNPSSDFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTIV-RSD 110
            P   H        S+DFT DLCVPSDDVAELEWLS FVDDS  DFP N LAGT++ R D
Sbjct: 56  QPNTFH--------SADFTDDLCVPSDDVAELEWLSNFVDDSFADFPENELAGTVMARPD 107

Query: 111 TSLSGRGRSKRSKATNSAANTTTWNWTS-----------SESESGNSKQKRENHRQSSPI 159
           +S  GR RSKRS+A+     +T   WTS           S++ S  +   ++    SS +
Sbjct: 108 SSFPGRTRSKRSRAS-----STNKVWTSLPVSEIPMIGKSKTNSNKNSIVKKESSSSSSV 162

Query: 160 PEG-------------GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYR 206
             G             G R+CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYR
Sbjct: 163 ISGERSSSSSPASSPTGARKCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYR 222

Query: 207 PASSPTFVLTQHSNSHRKVLELRRQKELLRQQQLQQQQQQEEGQGQIYRHQRDFEVC 263
           PA+SPTFVLTQHSNSHRKV+ELRRQKE+LRQQQ QQ         Q+Y H  DFEVC
Sbjct: 223 PAASPTFVLTQHSNSHRKVMELRRQKEILRQQQQQQ---------QLYHHHHDFEVC 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541156|ref|XP_002511642.1| GATA transcription factor, putative [Ricinus communis] gi|223548822|gb|EEF50311.1| GATA transcription factor, putative [Ricinus communis]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 162/243 (66%), Positives = 183/243 (75%), Gaps = 17/243 (6%)

Query: 1   MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQSF 60
           MDIYG+P     T D FRIDDLLD SND+LF+S+S+  ++   +IA+D          + 
Sbjct: 1   MDIYGIP-----TPDYFRIDDLLDLSNDDLFSSASTCTSS---SIAADIHQPLNPSIHNS 52

Query: 61  DSFNP--SSDFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTI-VRSDTSLSGRG 117
             FNP  S+DFT  L VPSDDVAELEWLSQFVDDS ++FP N L GTI VRSDTS SG+ 
Sbjct: 53  APFNPALSTDFTDHLSVPSDDVAELEWLSQFVDDSFIEFPPNLLTGTINVRSDTSFSGKA 112

Query: 118 -RSKRSKATNSAANTTTWNWTSSESESGNSKQKRE-NHRQSSPIPEGGVRRCTHCASEKT 175
            R KRSKA  + A T      +S  E G SK K+E N+R  SP  EGG+RRCTHCASEKT
Sbjct: 113 ARRKRSKAATTTATTAW----TSSPEIGQSKSKKETNNRSLSPTTEGGIRRCTHCASEKT 168

Query: 176 PQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELRRQKELL 235
           PQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPA+SPTFVLTQHSNSHRKVLELRRQKE+L
Sbjct: 169 PQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVLELRRQKEML 228

Query: 236 RQQ 238
           RQQ
Sbjct: 229 RQQ 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225399|ref|NP_182031.1| GATA transcription factor 2 [Arabidopsis thaliana] gi|62900344|sp|O49741.1|GATA2_ARATH RecName: Full=GATA transcription factor 2; Short=AtGATA-2 gi|2959732|emb|CAA74000.1| homologous to GATA-binding transcription factors [Arabidopsis thaliana] gi|24030302|gb|AAN41321.1| putative GATA-type zinc finger transcription factor [Arabidopsis thaliana] gi|222423708|dbj|BAH19820.1| AT2G45050 [Arabidopsis thaliana] gi|225898595|dbj|BAH30428.1| hypothetical protein [Arabidopsis thaliana] gi|330255406|gb|AEC10500.1| GATA transcription factor 2 [Arabidopsis thaliana]

 Score =  239 bits (610), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 151/267 (56%), Positives = 180/267 (67%), Gaps = 37/267 (13%)

Query: 1   MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQSF 60
           MD+YGL S +    D     DLLDFSN+++F++SSS  +   T+ +S     P  Q+ SF
Sbjct: 1   MDVYGLSSPDLLRID-----DLLDFSNEDIFSASSSGGSTAATSSSS----FPPPQNPSF 51

Query: 61  DSFN-PSS----DFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTI--VRSDTSL 113
              + PSS     F  D+CVPSDD A LEWLSQFVDDS  DFPAN L GT+  V+++TS 
Sbjct: 52  HHHHLPSSADHHSFLHDICVPSDDAAHLEWLSQFVDDSFADFPANPLGGTMTSVKTETSF 111

Query: 114 SGRGRSKRSKATNSAANTTTWNWTSSESE------SGNSKQKREN----------HRQSS 157
            G+ RSKRS+A    A T  W+    ESE      +   K K+E           H+ SS
Sbjct: 112 PGKPRSKRSRAPAPFAGT--WSPMPLESEHQQLHSAAKFKPKKEQSGGGGGGGGRHQSSS 169

Query: 158 P--IPEGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVL 215
                 GG+RRCTHCASEKTPQWRTGPLGPKTLCNACGVR+KSGRLVPEYRPASSPTFVL
Sbjct: 170 SETTEGGGMRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVL 229

Query: 216 TQHSNSHRKVLELRRQKELLRQ-QQLQ 241
           TQHSNSHRKV+ELRRQKE++RQ QQ+Q
Sbjct: 230 TQHSNSHRKVMELRRQKEVMRQPQQVQ 256

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301133588|gb|ADK63416.1| GATA type zinc finger protein [Brassica rapa]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 148/256 (57%), Positives = 184/256 (71%), Gaps = 24/256 (9%)

Query: 1   MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQSF 60
           MD+YGL     ++QDL R+DDLLDFSN+++F++SSS +TA T+  +    + P   H   
Sbjct: 1   MDVYGL-----SSQDLLRVDDLLDFSNEDIFSASSSTSTAATSPSSFPPQN-PNYHHHHL 54

Query: 61  DSFNPSSDFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTI--VRSDTSLSGRGR 118
            S +    F  D+CVPSDD A LEWLSQFVDDS  DFPAN L GT+  V+++TS +G+ R
Sbjct: 55  PS-SADHSFLHDICVPSDDAAHLEWLSQFVDDSFADFPANPLGGTMTSVKTETSFTGKPR 113

Query: 119 SKRSKATNSAANTTTWNWTSSESE----SGNSKQKREN------HRQSSP-IPEG-GVRR 166
           SKRSK  ++   T  W   S   +    +G SK K+E+      H+ SS    EG G+RR
Sbjct: 114 SKRSKPPSTLVGT--WAPMSETDQNIHVAGRSKPKKEHSGGGGRHQSSSAETAEGAGLRR 171

Query: 167 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVL 226
           CTHCA++KTPQWRTGPLGPKTLCNACGVR+KSGRLVPEYRPASSPTFVLTQHSNSHRKV+
Sbjct: 172 CTHCATDKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVM 231

Query: 227 ELRRQKELLRQ-QQLQ 241
           ELRRQKE++RQ  Q+Q
Sbjct: 232 ELRRQKEVMRQPHQVQ 247

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282833|dbj|BAJ34282.1| unnamed protein product [Thellungiella halophila]

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 138/241 (57%), Positives = 165/241 (68%), Gaps = 12/241 (4%)

Query: 1   MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFTSSSSAATANTTAIASDTD--HLPQAQHQ 58
           MD+YGL S +    D     DLLDFSNDE+F+SSS+  ++  ++ AS  +  + P +   
Sbjct: 1   MDVYGLSSPDLLRID-----DLLDFSNDEIFSSSSTVTSSAASSAASSENPFNFPSSASN 55

Query: 59  SFDSFNPS--SDFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTIVRSDTSLSGR 116
           SF +  P   +DFT D CVPSDD A LEWLS+FVDDS  D+PAN L  T VR + S +G+
Sbjct: 56  SFHTSPPPLLTDFTHDFCVPSDDAAHLEWLSRFVDDSFSDYPANPLTMT-VRPEMSFTGK 114

Query: 117 GRSKRSKATNSAANTTTWNWTSSESESGNSKQKRENHRQSSPIPE--GGVRRCTHCASEK 174
            RS+RS+A       T      SE     +K K     ++ P+    GG RRCTHCASEK
Sbjct: 115 PRSRRSRAPAPPVAGTWAPMPESELCYSVAKTKPNKKFEAEPMAADGGGARRCTHCASEK 174

Query: 175 TPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELRRQKEL 234
           TPQWRTGPLGPKTLCNACGVR+KSGRLVPEYRPASSPTFVLTQHSNSHRKV+ELRRQKE 
Sbjct: 175 TPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKEQ 234

Query: 235 L 235
           L
Sbjct: 235 L 235

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37572447|dbj|BAC98493.1| AG-motif binding protein-3 [Nicotiana tabacum]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 137/271 (50%), Positives = 176/271 (64%), Gaps = 23/271 (8%)

Query: 1   MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQS- 59
           MD+YG+     +  DLFRIDDLLDFSNDE+F+ +S++++   T  +    H P + + S 
Sbjct: 1   MDVYGV-----SAPDLFRIDDLLDFSNDEIFSINSNSSSTTATPDSQHHHHQPHSDNSSA 55

Query: 60  -----FDSFNP--SSDFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTIVRSDTS 112
                +D+  P  S DFT +LCVPSDDVAELEWLS FV+DS  +FP NS+ GT+  S  S
Sbjct: 56  ATANYYDALLPNCSDDFTDNLCVPSDDVAELEWLSNFVEDSFSNFPTNSITGTMNLSSNS 115

Query: 113 LSGRGRSKRSKATNSAANTTTWNWTSSESESGNSKQKRENHRQSSPIPEGGVRRCTHCAS 172
            +    S+     + + ++ T +  +  +   N +       +SS + +   RRCTHCAS
Sbjct: 116 -TASFHSRSRSKRSRSTSSWTSSLQNPNTTMKNKEISVHTRERSSSMDDDVPRRCTHCAS 174

Query: 173 EKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELRRQK 232
           EKTPQWRTGPLGPKTLCNACGVR+KSGRLVPEYRPA+SPTFVLTQHSNSHRKV+ELRRQK
Sbjct: 175 EKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQK 234

Query: 233 ELLRQQQLQQQQQQEEGQGQIYRHQRDFEVC 263
           E++     QQ    EEG      +   F VC
Sbjct: 235 EMVH----QQPPPTEEGM-----YGNHFRVC 256

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824543|ref|XP_002880154.1| hypothetical protein ARALYDRAFT_903940 [Arabidopsis lyrata subsp. lyrata] gi|297325993|gb|EFH56413.1| hypothetical protein ARALYDRAFT_903940 [Arabidopsis lyrata subsp. lyrata]

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 144/265 (54%), Positives = 175/265 (66%), Gaps = 35/265 (13%)

Query: 1   MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQSF 60
           MD+YGL S +    D     DLLDFSN+++F++SSS  +   T+ +S     P  Q+ +F
Sbjct: 1   MDVYGLSSPDLLRID-----DLLDFSNEDIFSASSSGGSTAATSSSS----FPPPQNPNF 51

Query: 61  DSFN-PSS----DFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTI--VRSDTSL 113
              + PSS     F  D+CVPSDD A LEWLSQFVDDS  DFPAN L GT+   +++TS 
Sbjct: 52  HHHHLPSSADHHSFLHDICVPSDDAAHLEWLSQFVDDSFADFPANPLGGTMTSAKTETSF 111

Query: 114 SGRGRSKRSKATNSAANTTTWNWTSSESE------SGNSKQKRENHRQSSPIPEGG---- 163
            G+ RSKRS+A    A T  W+   +ESE      +   K K+E+               
Sbjct: 112 PGKPRSKRSRAPAPFAGT--WSPMPTESEHHQLHSAAKFKPKKEHSGGGGGGRHQSSSSE 169

Query: 164 ------VRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQ 217
                 +RRCTHCASEKTPQWRTGPLGPKTLCNACGVR+KSGRLVPEYRPASSPTFVLTQ
Sbjct: 170 SAEGGGMRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQ 229

Query: 218 HSNSHRKVLELRRQKELLRQ-QQLQ 241
           HSNSHRKV+ELRRQKE++RQ QQ+Q
Sbjct: 230 HSNSHRKVMELRRQKEVMRQPQQVQ 254

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232355|ref|NP_191612.1| GATA transcription factor 4 [Arabidopsis thaliana] gi|62900345|sp|O49743.1|GATA4_ARATH RecName: Full=GATA transcription factor 4; Short=AtGATA-4 gi|14190407|gb|AAK55684.1|AF378881_1 AT3g60530/T8B10_190 [Arabidopsis thaliana] gi|2959736|emb|CAA74002.1| homologous to GATA-binding transcription factors [Arabidopsis thaliana] gi|7288001|emb|CAB81839.1| GATA transcription factor 4 [Arabidopsis thaliana] gi|14517395|gb|AAK62588.1| AT3g60530/T8B10_190 [Arabidopsis thaliana] gi|15215891|gb|AAK91489.1| AT3g60530/T8B10_190 [Arabidopsis thaliana] gi|332646554|gb|AEE80075.1| GATA transcription factor 4 [Arabidopsis thaliana]

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 134/233 (57%), Positives = 161/233 (69%), Gaps = 7/233 (3%)

Query: 1   MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFTSSSSAATANTTAIASDTDHLPQAQHQSF 60
           MD+YG+ S +    D     DLLDFSNDE+F+SSS+  ++  ++ AS  +        ++
Sbjct: 1   MDVYGMSSPDLLRID-----DLLDFSNDEIFSSSSTVTSSAASSAASSENPF-SFPSSTY 54

Query: 61  DSFNPSSDFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTIVRSDTSLSGRGRSK 120
            S    +DFT DLCVPSDD A LEWLS+FVDDS  DFPAN L  T VR + S +G+ RS+
Sbjct: 55  TSPTLLTDFTHDLCVPSDDAAHLEWLSRFVDDSFSDFPANPLTMT-VRPEISFTGKPRSR 113

Query: 121 RSKATNSAANTTTWNWTSSESESGNSKQKRENHRQSSPIPEGGVRRCTHCASEKTPQWRT 180
           RS+A   +   T    + SE     +K K +    +  +   G RRCTHCASEKTPQWRT
Sbjct: 114 RSRAPAPSVAGTWAPMSESELCHSVAKPKPKKVYNAESVTADGARRCTHCASEKTPQWRT 173

Query: 181 GPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELRRQKE 233
           GPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKV+ELRRQKE
Sbjct: 174 GPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKE 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817360|ref|XP_002876563.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297322401|gb|EFH52822.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 126/213 (59%), Positives = 149/213 (69%), Gaps = 5/213 (2%)

Query: 25  FSNDELFTSSSSAATANTTAIASDTDHLP-QAQHQSFDSFNPSSDFTGDLCVPSDDVAEL 83
           FSNDE+F+SS+S+   ++ A ++ +   P      ++ S    +DFT DLCVPSDD A L
Sbjct: 15  FSNDEIFSSSTSSTVTSSAASSAGSSENPFNFPSSAYTSPPLLTDFTHDLCVPSDDAAHL 74

Query: 84  EWLSQFVDDSCMDFPANSLAGTIVRSDTSLSGRGRSKRSKATNSAANTTTWNWTSSESES 143
           EWLS+FVDDS  DFPAN L  T VR + S +G+ RS+RS+A   +   T      SE   
Sbjct: 75  EWLSRFVDDSFSDFPANPLTMT-VRPEISFTGKPRSRRSRAPAPSVAGTWAPMPESELCH 133

Query: 144 GNSKQKRENHRQSSPIPE---GGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGR 200
             +K K +    +  I     GG RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGR
Sbjct: 134 SVAKPKPKKVYNAESITADVGGGARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGR 193

Query: 201 LVPEYRPASSPTFVLTQHSNSHRKVLELRRQKE 233
           LVPEYRPASSPTFVLTQHSNSHRKV+ELRRQKE
Sbjct: 194 LVPEYRPASSPTFVLTQHSNSHRKVMELRRQKE 226

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
TAIR|locus:2055589	264	GATA2 "GATA transcription fact	0.288	0.287	0.842	9.9e-56
TAIR|locus:2103346	240	GATA4 "GATA transcription fact	0.828	0.908	0.52	8.9e-54
TAIR|locus:2145259	331	GATA12 "GATA transcription fac	0.277	0.220	0.769	2e-41
TAIR|locus:2123738	308	GATA9 "GATA transcription fact	0.243	0.207	0.890	5.2e-41
TAIR|locus:2155056	339	GATA5 "GATA transcription fact	0.231	0.179	0.754	2.2e-36
TAIR|locus:2080828	312	GATA6 "GATA transcription fact	0.300	0.253	0.617	2.1e-34
TAIR|locus:2122214	238	GATA7 "GATA transcription fact	0.296	0.327	0.623	5.5e-32
TAIR|locus:2082637	322	BME3 "BLUE MICROPYLAR END 3" [	0.235	0.192	0.758	5.3e-30
TAIR|locus:2139594	269	GATA3 "GATA transcription fact	0.231	0.226	0.770	4.7e-29
TAIR|locus:2205100	303	GATA11 "GATA transcription fac	0.247	0.214	0.769	6.6e-26

TAIR|locus:2055589 GATA2 "GATA transcription factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
 Identities = 64/76 (84%), Positives = 66/76 (86%)

Query:   150 RENHRQSSPIPEGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAS 209
             R     S     GG+RRCTHCASEKTPQWRTGPLGPKTLCNACGVR+KSGRLVPEYRPAS
Sbjct:   164 RHQSSSSETTEGGGMRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAS 223

Query:   210 SPTFVLTQHSNSHRKV 225
             SPTFVLTQHSNSHRKV
Sbjct:   224 SPTFVLTQHSNSHRKV 239

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2103346 GATA4 "GATA transcription factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 117/225 (52%), Positives = 130/225 (57%)

Query:     1 MDIYGLPSNNTTTQDLFRIDDLLDFSNDELFXXXXXXXXXXXXXXXXXXDHLPQAQHQSF 60
             MD+YG+ S      DL RIDDLLDFSNDE+F                  +        ++
Sbjct:     1 MDVYGMSS-----PDLLRIDDLLDFSNDEIFSSSSTVTSSAASSAASSENPF-SFPSSTY 54

Query:    61 DSFNPSSDFTGDLCVPSDDVAELEWLSQFVDDSCMDFPANSLAGTIVRSDTSLXXXXXXX 120
              S    +DFT DLCVPSDD A LEWLS+FVDDS  DFPAN L  T VR + S        
Sbjct:    55 TSPTLLTDFTHDLCVPSDDAAHLEWLSRFVDDSFSDFPANPLTMT-VRPEISFTGKPRSR 113

Query:   121 XXXXXXXXXXXXXXXXXXXXXXXGNSKQKRENHRQSSPIPEGGVRRCTHCASEKTPQWRT 180
                                      +K K +    +  +   G RRCTHCASEKTPQWRT
Sbjct:   114 RSRAPAPSVAGTWAPMSESELCHSVAKPKPKKVYNAESVTADGARRCTHCASEKTPQWRT 173

Query:   181 GPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKV 225
             GPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKV
Sbjct:   174 GPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKV 218

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2145259 GATA12 "GATA transcription factor 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
 Identities = 60/78 (76%), Positives = 67/78 (85%)

Query:   153 HRQSSPI--PE-GGV--RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRP 207
             HR+   +  PE GG   RRC HCA++KTPQWRTGP+GPKTLCNACGVRYKSGRLVPEYRP
Sbjct:   202 HRRKKDVSSPESGGAEERRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRP 261

Query:   208 ASSPTFVLTQHSNSHRKV 225
             A+SPTFVL +HSNSHRKV
Sbjct:   262 AASPTFVLAKHSNSHRKV 279

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2123738 GATA9 "GATA transcription factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 57/64 (89%), Positives = 61/64 (95%)

Query:   162 GGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNS 221
             GG RRC HCA+EKTPQWRTGP+GPKTLCNACGVRYKSGRLVPEYRPASSPTFV+ +HSNS
Sbjct:   194 GGGRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNS 253

Query:   222 HRKV 225
             HRKV
Sbjct:   254 HRKV 257

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2155056 GATA5 "GATA transcription factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
 Identities = 46/61 (75%), Positives = 51/61 (83%)

Query:   165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRK 224
             R+C+HC  +KTPQWR GP+G KTLCNACGVRYKSGRL+PEYRPA SPTF    HSN HRK
Sbjct:   249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRK 308

Query:   225 V 225
             V
Sbjct:   309 V 309

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2080828 GATA6 "GATA transcription factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
 Identities = 50/81 (61%), Positives = 58/81 (71%)

Query:   147 KQKR--ENHRQSSPIPEGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPE 204
             K+K+  +N  Q+    +   R+C HC  +KTPQWR GPLG KTLCNACGVRYKSGRL+PE
Sbjct:   201 KKKKVWKNAGQTQTQTQTQTRQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPE 260

Query:   205 YRPASSPTFVLTQHSNSHRKV 225
             YRPA SPTF    HSN H KV
Sbjct:   261 YRPACSPTFSSELHSNHHSKV 281

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2122214 GATA7 "GATA transcription factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
 Identities = 53/85 (62%), Positives = 61/85 (71%)

Query:   148 QKRENHRQSSPIPEGGV------RRC-THCASEKTPQWRTGPLGPKTLCNACGVRYKSGR 200
             ++++  RQ      GGV      RRC +HC  +KTPQWR GPLG KTLCNACGVR+KSGR
Sbjct:   140 RRKKRGRQKVDASYGGVVQQQQLRRCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGR 199

Query:   201 LVPEYRPASSPTFVLTQHSNSHRKV 225
             L+PEYRPA SPTF    HSNSHRKV
Sbjct:   200 LLPEYRPACSPTFTNEIHSNSHRKV 224

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2082637 BME3 "BLUE MICROPYLAR END 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
 Identities = 47/62 (75%), Positives = 52/62 (83%)

Query:   164 VRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHR 223
             +R+C HC   KTPQWR GP+GPKTLCNACGVRYKSGRL PEYRPA+SPTF    HSNSH+
Sbjct:   228 LRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHK 287

Query:   224 KV 225
             KV
Sbjct:   288 KV 289

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2139594 GATA3 "GATA transcription factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
 Identities = 47/61 (77%), Positives = 51/61 (83%)

Query:   165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRK 224
             RRC+HC +  TPQWRTGP+GPKTLCNACGVR+KSGRL PEYRPA SPTF    HSN HRK
Sbjct:   180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRK 239

Query:   225 V 225
             V
Sbjct:   240 V 240

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2205100 GATA11 "GATA transcription factor 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 50/65 (76%), Positives = 57/65 (87%)

Query:   161 EGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSN 220
             +G VR+CTHC + KTPQWR GP GPKTLCNACGVR++SGRLVPEYRPASSPTF+   HSN
Sbjct:   216 DGIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSN 275

Query:   221 SHRKV 225
             SHRK+
Sbjct:   276 SHRKI 280

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49741	GATA2_ARATH	No assigned EC number	0.5655	0.8745	0.8712	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	263
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	4e-14
pfam00320	36	pfam00320, GATA, GATA zinc finger	2e-13
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	3e-12

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 64.7 bits (158), Expect = 4e-14
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 162 GGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFV 214
           G  R C++C + +TP WR GP G KTLCNACG+ YK    +   RP S     
Sbjct: 1   GSGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLK--RPLSLKKDG 51

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 62.3 bits (152), Expect = 2e-13
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 167 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLV 202
           C++C + KTP WR GP G +TLCNACG+ Y+   L 
Sbjct: 1   CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 59.7 bits (145), Expect = 3e-12
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 166 RCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTF 213
            C++C +  TP WR GP G  TLCNACG+ +K        RP S    
Sbjct: 1   ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRKK 45

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.52
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.5
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.38
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.99
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.37
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	89.88
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	86.94

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.52  E-value=5.1e-15  Score=106.94  Aligned_cols=44  Identities=45%  Similarity=0.974  Sum_probs=39.4

Q ss_pred             ccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCCCCC
Q 024757          166 RCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPT  212 (263)
Q Consensus       166 ~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~spt  212 (263)
                      .|+||++++||+||+||.|..+|||||||||++.   ...||+..+.
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~---~~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKH---GVMRPLSKRK   44 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhc---CCCCCcccCc
Confidence            4999999999999999988899999999999954   4778887766

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.50  E-value=1.4e-14  Score=103.63  Aligned_cols=47  Identities=49%  Similarity=0.960  Sum_probs=39.0

Q ss_pred             CCcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCCCC
Q 024757          163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSP  211 (263)
Q Consensus       163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~sp  211 (263)
                      ..+.|+||+++.||+||+||.|...|||||||||++.+..  +||+...
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~--~rp~~~~   48 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGL--KRPLSLK   48 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCC--CCccccc
Confidence            4578999999999999999999889999999999974332  4665544

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.38  E-value=6.3e-14  Score=93.50  Aligned_cols=34  Identities=56%  Similarity=1.256  Sum_probs=27.0

Q ss_pred             cccCCCCCCCccccCCCCCccccchhhhhhhcCC
Q 024757          167 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGR  200 (263)
Q Consensus       167 C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~gr  200 (263)
                      |.||++++||+||+||.|..+||||||++|++.+
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~   34 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYG   34 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhC
Confidence            8999999999999999998889999999999743

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.99  E-value=3.2e-10  Score=95.04  Aligned_cols=49  Identities=65%  Similarity=1.359  Sum_probs=43.7

Q ss_pred             CcccccCCCCCCCccccCCCCCccccchhhhhhhcC---CCCCCCCCCCCCC
Q 024757          164 VRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSG---RLVPEYRPASSPT  212 (263)
Q Consensus       164 ~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~g---rl~p~~RP~~spt  212 (263)
                      ...|.+|++..||+||+++.|++.+|||||++|+++   +.++.++....+.
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~~~~~~  250 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRPASSPR  250 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcCccccccccCcccccc
Confidence            589999999999999999999999999999999997   6777777766655

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.37  E-value=1.6e-07  Score=93.39  Aligned_cols=54  Identities=33%  Similarity=0.623  Sum_probs=48.3

Q ss_pred             CCcccccCCCCCCCccccCCCC----CccccchhhhhhhcCCCCCCCC-CCCCCCccccccc
Q 024757          163 GVRRCTHCASEKTPQWRTGPLG----PKTLCNACGVRYKSGRLVPEYR-PASSPTFVLTQHS  219 (263)
Q Consensus       163 ~~r~C~~Cgt~~TP~WRrGP~G----~~~LCNACGl~yk~grl~p~~R-P~~spt~~~~~hs  219 (263)
                      ....|.||.+..||+|||+..+    .-+|||||||+|+   +|...| |+.+++.++..|.
T Consensus       157 ~~~vc~Nc~t~stPlwrR~~~~~s~~~n~lcnaCgl~~k---lhg~~r~P~t~ks~~~ks~~  215 (498)
T COG5641         157 QPHVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLK---LHGSPRAPISLKSDSIKSRS  215 (498)
T ss_pred             ccchhccccccCCccccccccccccCCcccccccccccc---ccCCcCCCcccccccccccc
Confidence            3458999999999999999993    3899999999999   899999 9999999988776

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=89.88  E-value=0.17  Score=51.49  Aligned_cols=39  Identities=31%  Similarity=0.651  Sum_probs=32.9

Q ss_pred             CCcccccCCCCCCCcc--ccCCCCCccccchhhhhhhc-CCC
Q 024757          163 GVRRCTHCASEKTPQW--RTGPLGPKTLCNACGVRYKS-GRL  201 (263)
Q Consensus       163 ~~r~C~~Cgt~~TP~W--RrGP~G~~~LCNACGl~yk~-grl  201 (263)
                      .++.|-+|++++.-+|  .-+|+..+.||-.|-+|||| |+|
T Consensus       385 ~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKygGL  426 (693)
T KOG3554|consen  385 DGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKYGGL  426 (693)
T ss_pred             CCCcccccccccccceeccCCCCccchhhHHHHHHHHHhcCc
Confidence            4689999999999999  55666667899999999998 444

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=86.94  E-value=0.42  Score=48.48  Aligned_cols=43  Identities=26%  Similarity=0.363  Sum_probs=33.3

Q ss_pred             CcccccCCC-CCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCC
Q 024757          164 VRRCTHCAS-EKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAS  209 (263)
Q Consensus       164 ~r~C~~Cgt-~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~  209 (263)
                      ...|.+|++ +.||.||+...-.-++|||||++.+   +...++|+.
T Consensus       297 ~~~~s~~~~~~~tp~~~r~~~~~s~~~n~~~~~~~---~~~~~~p~~  340 (498)
T COG5641         297 DKKRSTLTTSTATPLWRRTSDKSSFSCNASGSALK---PPGSKRPLL  340 (498)
T ss_pred             hcCcccccccccCcccccccccccccccccccccC---CcccccccC
Confidence            457888887 7899999988777999999999998   444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	263
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	3e-12
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	3e-10
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	3e-08
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	2e-06
3dfx_A	63	Trans-acting T-cell-specific transcription factor	5e-06

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 59.5 bits (144), Expect = 3e-12
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAS 209
            +C++C+  +T +WR         CNAC +  +      + RP +
Sbjct: 9   FQCSNCSVTETIRWRNIRSKEGIQCNACFIYQR---KYNKTRPVT 50

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 53.2 bits (128), Expect = 3e-10
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYK 197
           R C +C +  TP WR    G   LCNACG+ +K
Sbjct: 5   RECVNCGATATPLWRRDRTG-HYLCNACGLYHK 36

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAS 209
             CT+C ++ TP WR  P G + LCNACG+  K   L    RP S
Sbjct: 2   TTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPLS 42

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 161 EGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAS 209
           + G   CT+C ++ TP WR  P G + LCNACG+  K   L    RP S
Sbjct: 6   QNGPTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPLS 50

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 42.3 bits (99), Expect = 5e-06
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 160 PEGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYK 197
                  C +C +  T  WR    G   +CNACG+ YK
Sbjct: 3   ARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYK 39

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.69
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.67
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.62
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.61
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.53
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.52
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.27

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.69  E-value=6.9e-18  Score=124.83  Aligned_cols=55  Identities=27%  Similarity=0.567  Sum_probs=47.0

Q ss_pred             CCCcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCCCCCcccccccc
Q 024757          162 GGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSN  220 (263)
Q Consensus       162 ~~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~spt~~~~~hsn  220 (263)
                      .....|.||+++.||+||+||.|+ +|||||||||++.   ..+||+.+.+++|+.+.+
T Consensus         5 ~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~---~~~RP~~~~~~~i~~R~R   59 (63)
T 3dfx_A            5 RAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLH---NINRPLTMKKEGIQTRNR   59 (63)
T ss_dssp             CTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHH---SSCCCGGGCCSSCCCCC-
T ss_pred             CCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHc---CCCCCcCcCCCccccccC
Confidence            455789999999999999999996 9999999999954   457999999888876543

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.67  E-value=7.9e-18  Score=125.43  Aligned_cols=57  Identities=40%  Similarity=0.767  Sum_probs=49.5

Q ss_pred             CCCCcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCCCCCccccccccc
Q 024757          161 EGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNS  221 (263)
Q Consensus       161 ~~~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~spt~~~~~hsns  221 (263)
                      .+..+.|.||++++||+||+||.|. +|||||||||+   ++...||+.+++++|+++.+.
T Consensus         6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~---~~~~~RP~~~k~~~ik~R~R~   62 (66)
T 4gat_A            6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLK---LHGVVRPLSLKTDVIKKRNRN   62 (66)
T ss_dssp             SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHH---HHCSCCCGGGCCSCCCCCCCS
T ss_pred             CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHH---HcCCCCchhhccccccccccC
Confidence            4667899999999999999999995 99999999999   556679999999888766543

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.62  E-value=2.2e-16  Score=110.30  Aligned_cols=43  Identities=40%  Similarity=0.803  Sum_probs=37.4

Q ss_pred             CCcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCC
Q 024757          163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAS  209 (263)
Q Consensus       163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~  209 (263)
                      ..+.|.||++++||+||+||.|+ +|||||||||++   +...||+.
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~---~~~~RP~~   45 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKM---NGQNRPLI   45 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHH---TCSCCCCC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHH---cCCCCCCC
Confidence            45789999999999999999995 999999999994   55667763

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.61  E-value=1.3e-16  Score=110.05  Aligned_cols=41  Identities=46%  Similarity=0.913  Sum_probs=35.9

Q ss_pred             cccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCC
Q 024757          165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAS  209 (263)
Q Consensus       165 r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~  209 (263)
                      +.|++|++++||+||+||.|+ +|||||||||++   +...||++
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~---~~~~RP~~   42 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKL---HGVVRPLS   42 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHH---HSSCCCCC
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHH---hCCCCCCC
Confidence            579999999999999999996 999999999995   44557764

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.53  E-value=2.7e-15  Score=121.67  Aligned_cols=54  Identities=30%  Similarity=0.617  Sum_probs=47.5

Q ss_pred             CCCcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCCCCCccccccc
Q 024757          162 GGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHS  219 (263)
Q Consensus       162 ~~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~spt~~~~~hs  219 (263)
                      .....|+||+++.||+||+||+| .+|||||||||+   ++...||+.+.++.|+.+.
T Consensus        57 ~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~---~~~~~rp~~~~~~~i~~r~  110 (115)
T 4hc9_A           57 RAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYK---LHNINRPLTMKKEGIQTRN  110 (115)
T ss_dssp             CTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHH---HHSSCCCGGGCCSSCCCCC
T ss_pred             cccccCCCcCCCCcceeEECCCC-CCcchHHHHHHH---HhCCCCCccccccchhhcc
Confidence            45689999999999999999999 999999999999   5556699999998887654

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.52  E-value=7.7e-16  Score=116.25  Aligned_cols=47  Identities=23%  Similarity=0.463  Sum_probs=37.0

Q ss_pred             CCCcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCCCC
Q 024757          162 GGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSP  211 (263)
Q Consensus       162 ~~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~sp  211 (263)
                      .....|+||++++||+||+|+.+..+|||||||||+   ++..+||+.+.
T Consensus         6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~---~~~~~RP~~~~   52 (71)
T 2kae_A            6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQR---KYNKTRPVTAV   52 (71)
T ss_dssp             --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHH---HHHSCCCTHHH
T ss_pred             CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHH---HhCCCCCcccc
Confidence            455789999999999999954444599999999999   45567887543

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.27  E-value=8.8e-13  Score=106.90  Aligned_cols=45  Identities=40%  Similarity=0.821  Sum_probs=37.5

Q ss_pred             CCcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCCCC
Q 024757          163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSP  211 (263)
Q Consensus       163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~sp  211 (263)
                      ..+.|.||+++.||+||+|+.| .+|||||||||+   ++...||+..+
T Consensus         4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~K---l~G~nRP~~Kp   48 (115)
T 4hc9_A            4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHK---MNGQNRPLIKP   48 (115)
T ss_dssp             --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHH---HHSSCCCCSSC
T ss_pred             CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhh---hcccccccccc
Confidence            4588999999999999999999 899999999998   55566776544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	263
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	8e-12
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	2e-09
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	1e-07

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (136), Expect = 8e-12
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYK 197
           R C +C +  TP WR    G   LCNACG+ +K
Sbjct: 3   RECVNCGATATPLWRRDRTG-HYLCNACGLYHK 34

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 49.8 bits (119), Expect = 2e-09
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 167 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAS 209
           CT+C ++ TP WR  P G + LCNACG+  K   L    RP S
Sbjct: 3   CTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPLS 41

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.4 bits (107), Expect = 1e-07
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRK 224
             C++C +  T  WR  P+G   +CNACG+ YK  ++    RP +     +      +RK
Sbjct: 5   TVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV---NRPLTMRKDGIQTR---NRK 57

Query: 225 VLELRRQKE 233
           V    +++ 
Sbjct: 58  VSSKGKKRR 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.69
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.65
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.62
d1neea2	37	Zinc-binding domain of translation initiation fact	80.35

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.69  E-value=1.5e-18  Score=117.84  Aligned_cols=41  Identities=49%  Similarity=0.961  Sum_probs=37.9

Q ss_pred             ccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCCC
Q 024757          166 RCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASS  210 (263)
Q Consensus       166 ~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~s  210 (263)
                      .|.||++++||+||+||.| ++|||||||||+   ++..+||+++
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k---~~g~~RP~sl   42 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPLSL   42 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHH---HHSSCCCCCC
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHH---HcCCCCCCCC
Confidence            5999999999999999999 899999999999   7788899864

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.65  E-value=3.1e-18  Score=126.04  Aligned_cols=53  Identities=32%  Similarity=0.716  Sum_probs=45.7

Q ss_pred             CcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCCCCCcccccccc
Q 024757          164 VRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSN  220 (263)
Q Consensus       164 ~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~spt~~~~~hsn  220 (263)
                      +..|+||+++.||+||+||.| .+|||||||||+   ++...||+.+....|+.+..
T Consensus         4 g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~---~~~~~RP~~~~~~~i~~r~r   56 (66)
T d3gata_           4 GTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYK---LHQVNRPLTMRKDGIQTRNR   56 (66)
T ss_dssp             TCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHH---HHCSCCCGGGCCSSCCCCSC
T ss_pred             CCCCCCCCCCCCcccccCCCC-CcccchhHHHHH---HhCCcCCccccccccccccC
Confidence            467999999999999999999 799999999999   55668998888777765544

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=4.1e-17  Score=109.22  Aligned_cols=34  Identities=44%  Similarity=0.983  Sum_probs=32.1

Q ss_pred             CcccccCCCCCCCccccCCCCCccccchhhhhhhc
Q 024757          164 VRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKS  198 (263)
Q Consensus       164 ~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~  198 (263)
                      .++|.||++++||+||+||.| ++|||||||||+.
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~   35 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTG-HYLCNACGLYHKM   35 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHH
T ss_pred             cCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHH
Confidence            578999999999999999999 7999999999994

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=80.35  E-value=0.28  Score=31.11  Aligned_cols=29  Identities=31%  Similarity=0.711  Sum_probs=23.6

Q ss_pred             ccccCCCCCCCccccCCCCCccccchhhhh
Q 024757          166 RCTHCASEKTPQWRTGPLGPKTLCNACGVR  195 (263)
Q Consensus       166 ~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~  195 (263)
                      .|..|+.+.|-+-|.+-.- -.-|+|||-.
T Consensus         3 ~C~~C~spDT~l~ke~R~~-~l~C~aCGa~   31 (37)
T d1neea2           3 ICHECNRPDTRIIREGRIS-LLKCEACGAK   31 (37)
T ss_dssp             HHTCCSSCSSCCEEETTTT-EEECSTTSCC
T ss_pred             ECCCCCCCCCEEEEcCCEE-EEEeccCCCC
Confidence            5999999999999976433 4689999964