Citrus Sinensis ID: 024767
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 263 | ||||||
| 224075359 | 304 | predicted protein [Populus trichocarpa] | 0.726 | 0.628 | 0.748 | 2e-82 | |
| 118488282 | 325 | unknown [Populus trichocarpa] | 0.726 | 0.587 | 0.748 | 5e-82 | |
| 255574454 | 304 | molybdopterin cofactor sulfurase, putati | 0.726 | 0.628 | 0.748 | 7e-82 | |
| 225423585 | 311 | PREDICTED: MOSC domain-containing protei | 0.722 | 0.610 | 0.742 | 7e-81 | |
| 15221559 | 318 | molybdenum cofactor sulfurase-like prote | 0.722 | 0.597 | 0.721 | 9e-79 | |
| 297846066 | 318 | molybdenum cofactor sulfurase family pro | 0.722 | 0.597 | 0.710 | 1e-77 | |
| 449433473 | 301 | PREDICTED: MOSC domain-containing protei | 0.703 | 0.614 | 0.718 | 3e-76 | |
| 226493836 | 321 | mo-molybdopterin cofactor sulfurase [Zea | 0.722 | 0.591 | 0.689 | 5e-74 | |
| 356530109 | 316 | PREDICTED: MOSC domain-containing protei | 0.714 | 0.594 | 0.7 | 7e-74 | |
| 238009102 | 321 | unknown [Zea mays] | 0.722 | 0.591 | 0.684 | 1e-73 |
| >gi|224075359|ref|XP_002304601.1| predicted protein [Populus trichocarpa] gi|222842033|gb|EEE79580.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 143/191 (74%), Positives = 169/191 (88%)
Query: 1 MEAAGKVTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALV 60
MEA KV+SIF+YP+KSCRGIS+SQAPLTPTGFRWDR W+V+N +GRAYTQR EPKLALV
Sbjct: 1 MEATAKVSSIFIYPVKSCRGISLSQAPLTPTGFRWDRNWLVVNYRGRAYTQRVEPKLALV 60
Query: 61 QIELPNEAFLEGWEPTGSSYMVIRAPGMQALKIPMSKPCDIADGVSVWEWSGSALDEGAE 120
+IELP+EAF EGWEPT +S+M I+APGM LKI + KP ++A+GVSVWEWSGSALDEGAE
Sbjct: 61 EIELPDEAFSEGWEPTKNSFMKIKAPGMSVLKISLMKPSEVAEGVSVWEWSGSALDEGAE 120
Query: 121 ASNWFTNYLGKSSRLVRYNAESETRPVDPEYAAGQITMFSDGYPFMLLSQGSLDALNKLL 180
A+ WF++YLGK S+LVR+NA SETR +DP YA G TMFSD +PFML+SQGSLDALN+LL
Sbjct: 121 AAKWFSDYLGKPSQLVRFNAASETRLIDPNYAPGHKTMFSDLFPFMLISQGSLDALNQLL 180
Query: 181 KEPVPINRFRP 191
+EPVPINRFRP
Sbjct: 181 REPVPINRFRP 191
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118488282|gb|ABK95960.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255574454|ref|XP_002528139.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] gi|223532437|gb|EEF34230.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|225423585|ref|XP_002273557.1| PREDICTED: MOSC domain-containing protein 1, mitochondrial [Vitis vinifera] gi|297738033|emb|CBI27234.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|15221559|ref|NP_174376.1| molybdenum cofactor sulfurase-like protein [Arabidopsis thaliana] gi|9755390|gb|AAF98197.1|AC000107_20 F17F8.22 [Arabidopsis thaliana] gi|26452771|dbj|BAC43466.1| unknown protein [Arabidopsis thaliana] gi|29824153|gb|AAP04037.1| unknown protein [Arabidopsis thaliana] gi|332193171|gb|AEE31292.1| molybdenum cofactor sulfurase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297846066|ref|XP_002890914.1| molybdenum cofactor sulfurase family protein [Arabidopsis lyrata subsp. lyrata] gi|297336756|gb|EFH67173.1| molybdenum cofactor sulfurase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|449433473|ref|XP_004134522.1| PREDICTED: MOSC domain-containing protein 2, mitochondrial-like [Cucumis sativus] gi|449527406|ref|XP_004170702.1| PREDICTED: MOSC domain-containing protein 2, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|226493836|ref|NP_001148545.1| mo-molybdopterin cofactor sulfurase [Zea mays] gi|195620298|gb|ACG31979.1| mo-molybdopterin cofactor sulfurase [Zea mays] gi|414590195|tpg|DAA40766.1| TPA: mo-molybdopterin cofactor sulfurase [Zea mays] | Back alignment and taxonomy information |
|---|
| >gi|356530109|ref|XP_003533626.1| PREDICTED: MOSC domain-containing protein 1, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|238009102|gb|ACR35586.1| unknown [Zea mays] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 263 | ||||||
| TAIR|locus:2015746 | 318 | AT1G30910 [Arabidopsis thalian | 0.722 | 0.597 | 0.721 | 4.5e-75 | |
| TAIR|locus:2156369 | 308 | AT5G44720 [Arabidopsis thalian | 0.726 | 0.620 | 0.670 | 6.3e-69 | |
| MGI|MGI:1914497 | 338 | Marc2 "mitochondrial amidoxime | 0.680 | 0.529 | 0.326 | 2.4e-21 | |
| RGD|621257 | 338 | Marc2 "mitochondrial amidoxime | 0.676 | 0.526 | 0.325 | 1e-20 | |
| UNIPROTKB|O88994 | 338 | Marc2 "MOSC domain-containing | 0.676 | 0.526 | 0.325 | 1e-20 | |
| UNIPROTKB|G3X6L2 | 335 | MOSC2 "Uncharacterized protein | 0.680 | 0.534 | 0.325 | 4.4e-20 | |
| UNIPROTKB|Q1LZH1 | 336 | MARC2 "MOSC domain-containing | 0.680 | 0.532 | 0.325 | 4.4e-20 | |
| MGI|MGI:1913362 | 340 | Marc1 "mitochondrial amidoxime | 0.684 | 0.529 | 0.301 | 3.1e-19 | |
| UNIPROTKB|G5E6I5 | 343 | MOSC1 "Uncharacterized protein | 0.680 | 0.521 | 0.315 | 4e-19 | |
| UNIPROTKB|Q969Z3 | 335 | MARC2 "MOSC domain-containing | 0.680 | 0.534 | 0.3 | 1.4e-18 |
| TAIR|locus:2015746 AT1G30910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 137/190 (72%), Positives = 161/190 (84%)
Query: 2 EAAGKVTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQ 61
E A +V+S+FVYPIKSCRGIS+SQA LTPTGFRWDR W+++N+KGR TQR EPKL+L++
Sbjct: 16 EVAARVSSLFVYPIKSCRGISLSQAALTPTGFRWDRNWLIVNSKGRGLTQRVEPKLSLIE 75
Query: 62 IELPNEAFLEGWEPTGSSYMVIRAPGMQALKIPMSKPCDIADGVSVWEWSGSALDEGAEA 121
+E+P AF E WEP SS MV+RAPGM ALK+ ++KP IADGVSVWEWSGSALDEG EA
Sbjct: 76 VEMPKHAFGEDWEPEKSSNMVVRAPGMDALKVSLAKPDKIADGVSVWEWSGSALDEGEEA 135
Query: 122 SNWFTNYLGKSSRLVRYNAESETRPVDPEYAAGQITMFSDGYPFMLLSQGSLDALNKLLK 181
S WFTN++GK RLVR+N+ ETRPVDP YA G I MFSD YPF+L+SQGSLD+LNKLLK
Sbjct: 136 SQWFTNFVGKPCRLVRFNSAYETRPVDPNYAPGHIAMFSDMYPFLLISQGSLDSLNKLLK 195
Query: 182 EPVPINRFRP 191
EPVPINRFRP
Sbjct: 196 EPVPINRFRP 205
|
|
| TAIR|locus:2156369 AT5G44720 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1914497 Marc2 "mitochondrial amidoxime reducing component 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|621257 Marc2 "mitochondrial amidoxime reducing component 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O88994 Marc2 "MOSC domain-containing protein 2, mitochondrial" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G3X6L2 MOSC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q1LZH1 MARC2 "MOSC domain-containing protein 2, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1913362 Marc1 "mitochondrial amidoxime reducing component 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G5E6I5 MOSC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q969Z3 MARC2 "MOSC domain-containing protein 2, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 263 | |||
| pfam03476 | 118 | pfam03476, MOSC_N, MOSC N-terminal beta barrel dom | 9e-47 | |
| COG3217 | 270 | COG3217, COG3217, Uncharacterized Fe-S protein [Ge | 4e-27 | |
| PLN02724 | 805 | PLN02724, PLN02724, Molybdenum cofactor sulfurase | 1e-22 |
| >gnl|CDD|217584 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 9e-47
Identities = 52/128 (40%), Positives = 76/128 (59%), Gaps = 11/128 (8%)
Query: 5 GKVTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQIEL 64
+V+S+FVYPIKSCRG S+S+A LTP G RWDR+WMV+++ G+ T R P+L L++ L
Sbjct: 2 ARVSSLFVYPIKSCRGESLSRAELTPAGLRWDRRWMVVDSDGKFITARRHPRLVLIRTTL 61
Query: 65 PNEAFLEGWEPTGSSYMVIRAPGMQALKIPMSKPCDIADGVSVWEWSGSALDEGAEASNW 124
+ + APGM L +P++ GV VW S S D G A++W
Sbjct: 62 DE-----------DGGLTLTAPGMPPLSVPLAANKFQLVGVLVWGLSFSGRDCGDAAADW 110
Query: 125 FTNYLGKS 132
F+++LG+
Sbjct: 111 FSDFLGEP 118
|
This domain is found to the N-terminus of pfam03473. The function of this domain is unknown, however it is predicted to adopt a beta barrel fold. Length = 118 |
| >gnl|CDD|225758 COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 263 | |||
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| COG3217 | 270 | Uncharacterized Fe-S protein [General function pre | 100.0 | |
| KOG2362 | 336 | consensus Uncharacterized Fe-S protein [General fu | 100.0 | |
| PF03476 | 120 | MOSC_N: MOSC N-terminal beta barrel domain; InterP | 100.0 | |
| PF03473 | 133 | MOSC: MOSC domain; InterPro: IPR005302 Molybdenum | 99.71 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 98.99 | |
| PRK14499 | 308 | molybdenum cofactor biosynthesis protein MoaC/MOSC | 96.79 | |
| COG2258 | 210 | Uncharacterized protein conserved in bacteria [Fun | 86.5 |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-58 Score=461.62 Aligned_cols=239 Identities=32% Similarity=0.534 Sum_probs=211.6
Q ss_pred CceEEeeeeecccCCCCceeeceeeeeccccccCceeEEEecCCceEecCCCCceeEEEEeccCcccccCCCCCCCceEE
Q 024767 3 AAGKVTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEPTGSSYMV 82 (263)
Q Consensus 3 ~~~~V~~L~~yPIKS~~g~~v~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~L~ 82 (263)
..++|++|||||||||+|++|++|++++.||.|||+|||+|++|+|+|||++|+|++|++.++.+ ++.|+
T Consensus 516 ~~~~v~~l~iYPVKS~~g~~v~~a~~~~~Gl~~DR~~~lvd~~g~~~t~r~~p~l~~i~~~~~~~----------~~~l~ 585 (805)
T PLN02724 516 DSHRLKSITVYPIKSCAGFSVERWPLSETGLLYDREWMIQSLTGEILTQKKVPEMCLITTFIDLE----------SGKLV 585 (805)
T ss_pred CCCEEEEEEEeccccCCCceeeEEEEecccccccceEEEEcCCCcEEEcccCceEEEEEeEEecC----------CCeEE
Confidence 45689999999999999999999999999999999999999999999999999999999999642 57899
Q ss_pred EEeCCCc-eeEEcCCCCC--CCcccEEEecccccccccchhHHHHHHHhhCCceEEEEecCCCCCCCCC-----cCCC--
Q 024767 83 IRAPGMQ-ALKIPMSKPC--DIADGVSVWEWSGSALDEGAEASNWFTNYLGKSSRLVRYNAESETRPVD-----PEYA-- 152 (263)
Q Consensus 83 l~~pg~~-~l~v~l~~~~--~~~~~~~vw~~~~~~~d~g~~~~~wlS~~Lg~~~rLv~~~~~~~~r~~~-----~~~~-- 152 (263)
+++|+++ ++.|++++.. ....++++|++.+.+++||+++++|||++||++|+|++.++... |... +.+.
T Consensus 586 l~~~~~~~~l~v~l~~~~~~~~~~~v~v~~~~~~~~~~g~~~~~w~S~~lg~~~~Lv~~~~~~~-r~~~~~~~~~~~~~~ 664 (805)
T PLN02724 586 VRAPRCDHKLEIPLESDSQHEESGEVILCGNRAESMSYGTEINEWFTNALGRRCTLVRKSSSNT-RVCRNRNPSHSPCGD 664 (805)
T ss_pred EEcCCCCccEEEeCCCcccccccceeEEeCCcceeEecchhHHHHHHHHhCCceEEEEeCCccc-ccccccccccccccC
Confidence 9999987 6999998653 23567899999999999999999999999999999999976543 4332 1111
Q ss_pred CCCeeeeccCCceeeeeHHHHHHHHHHcCC-------CCCCCcccccEEEec------CccceeeEecceeeeEEEecCC
Q 024767 153 AGQITMFSDGYPFMLLSQGSLDALNKLLKE-------PVPINRFRPKYNSKI------RIMQYLSIIGQHTNFFYKIASS 219 (263)
Q Consensus 153 ~~~~~~f~D~~pi~lis~aSl~~L~~~l~~-------~v~~~RFRpNIvv~g------d~w~~l~iIG~~~~~l~v~~~c 219 (263)
.+.+++|+|.+||||+|++||++||+++++ +++++||||||||+| |.|++|+ ||++ .|++++||
T Consensus 665 ~~~~~~faD~~p~llis~aSl~~Ln~~l~~~~~~~~~~v~~~RFRpNiVv~g~~~f~ED~W~~l~-IG~~--~~~~~~~C 741 (805)
T PLN02724 665 DESRLSFANEGQFLLISEASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGGEAYAEDEWQSLS-IGDA--EFTVLGGC 741 (805)
T ss_pred cCCceeecCCCceEEecHHHHHHHHHHhccccccccCCCcHHHccceEEECCCCCccccCceEEE-ECCE--EEEEeccc
Confidence 234589999999999999999999999973 699999999999998 6899999 8987 89999999
Q ss_pred Ccccceee--ccCCC--C-hhhHHHHhCCCCCCCceeEEecc
Q 024767 220 LHCSLLEL--CFGLV--E-EPILIIASYPDSFCLDIFYGISS 256 (263)
Q Consensus 220 ~RC~~~~v--~tg~~--~-~~l~~L~~~R~~~~g~~~fG~~~ 256 (263)
.||.|||+ +||++ + |||+||++||+.. |++.||++.
T Consensus 742 ~RC~~~tvDp~tg~~~~~~epl~tL~~~R~~~-~~~~FG~~~ 782 (805)
T PLN02724 742 NRCQMINIDQETGLVNPSNEPLATLASYRRVK-GKILFGILL 782 (805)
T ss_pred CCCCCCcCCcccCccCCCCChHHHHHHHhCcC-CCCCcccee
Confidence 99999999 48974 3 9999999999998 999999974
|
|
| >COG3217 Uncharacterized Fe-S protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2362 consensus Uncharacterized Fe-S protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO) | Back alignment and domain information |
|---|
| >PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form | Back alignment and domain information |
|---|
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >COG2258 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 263 | ||||
| 2exn_A | 136 | Solution Structure For The Protein Coded By Gene Lo | 3e-06 |
| >pdb|2EXN|A Chain A, Solution Structure For The Protein Coded By Gene Locus Bb0938 Of Bordetella Bronchiseptica. Northeast Structural Genomics Target Bor11 Length = 136 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 263 | |||
| 2exn_A | 136 | Hypothetical protein BOR11; beta barrel containing | 5e-45 |
| >2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 5e-45
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 22/151 (14%)
Query: 7 VTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQIELPN 66
+++ PI C + S+ + ++W+V N+ G+ + P+LA V +EL
Sbjct: 1 MSTTAYQPIAECGATTQSE------AAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELRM 54
Query: 67 EAFLEGWEPTGSSYMVIRAPGMQALKIPMSKPCD---IADGVSVWEWSGSALDEGAEASN 123
Y+V++APGM L IP+ D + + V E + +DEG A+
Sbjct: 55 G------------YLVLKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAA 102
Query: 124 WFTNYLGKSSRLVRYNAE-SETRPVDPEYAA 153
W +N+ G R+++ + + +E R E+
Sbjct: 103 WISNHAGVPCRILKVHPDMAEVRWPSLEHHH 133
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 263 | |||
| 2exn_A | 136 | Hypothetical protein BOR11; beta barrel containing | 100.0 | |
| 1oru_A | 195 | YUAD protein; structural genomics, cytosolic hypot | 99.42 | |
| 1o65_A | 246 | Hypothetical protein YIIM; structural genomics, un | 98.11 |
| >2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=234.01 Aligned_cols=125 Identities=28% Similarity=0.502 Sum_probs=112.7
Q ss_pred EeeeeecccCCCCceeeceeeeeccccccCceeEEEecCCceEecCCCCceeEEEEeccCcccccCCCCCCCceEEEEeC
Q 024767 7 VTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEPTGSSYMVIRAP 86 (263)
Q Consensus 7 V~~L~~yPIKS~~g~~v~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~L~l~~p 86 (263)
|++||+||||||+|++|+++. .|||+|||+|++|+|+|||++|+|++|++.++. +.|+|++|
T Consensus 1 v~~L~iYPIKSc~g~~l~~a~------~~DR~wmlvd~~G~~lt~r~~P~Lali~~~~~~------------~~L~l~~p 62 (136)
T 2exn_A 1 MSTTAYQPIAECGATTQSEAA------AYQKRWLVANDAGQWLNRDLCPRLAEVSVELRM------------GYLVLKAP 62 (136)
T ss_dssp CCCCCEEEETTTEEECCGGGG------GTCCSEEEEETTSCEECTTTCGGGGCCEEEECS------------SEEEEECS
T ss_pred CceEEEeccccCCceecCccC------ccCCcEEEEeCCCCEEEccCCccccEEEEEecC------------CEEEEEeC
Confidence 579999999999999999987 999999999999999999999999999999963 68999999
Q ss_pred CCceeEEcCCCCC---CCcccEEEecccccccccchhHHHHHHHhhCCceEEEEecCCCCCCCCCcC
Q 024767 87 GMQALKIPMSKPC---DIADGVSVWEWSGSALDEGAEASNWFTNYLGKSSRLVRYNAESETRPVDPE 150 (263)
Q Consensus 87 g~~~l~v~l~~~~---~~~~~~~vw~~~~~~~d~g~~~~~wlS~~Lg~~~rLv~~~~~~~~r~~~~~ 150 (263)
|++++.+++++.. .....++||++.+.+++||+++++|||++||.|++|++++++. .|.+++.
T Consensus 63 g~~~l~vpl~~~~~~~~~~~~v~vw~~~~~a~d~g~~~~~W~S~~Lg~p~rLv~~~~~~-~R~~~~~ 128 (136)
T 2exn_A 63 GMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDM-AEVRWPS 128 (136)
T ss_dssp SSCEEEEESSCCCSSCSCEEEEEETTEEEEEEECCHHHHHHHHHHTCSSEEEEEECTTT-CCCCCCC
T ss_pred CCceEEEECCCccccccCceeEEEeCCcceeEeccHHHHHHHHHHhCCCeEEEEcCCCC-ccccCcc
Confidence 9999999998654 2456799999999999999999999999999999999998765 3555544
|
| >1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2 | Back alignment and structure |
|---|
| >1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 263 | ||||
| d2exna1 | 128 | b.165.1.1 (A:1-128) Hypothetical protein BB0938 {B | 8e-37 |
| >d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: MOSC N-terminal domain-like superfamily: MOSC N-terminal domain-like family: MOSC N-terminal domain-like domain: Hypothetical protein BB0938 species: Bordetella bronchiseptica [TaxId: 518]
Score = 125 bits (314), Expect = 8e-37
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 7 VTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQIELPN 66
+++ PI C + S+ + ++W+V N+ G+ + P+LA V +EL
Sbjct: 1 MSTTAYQPIAECGATTQSE------AAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELRM 54
Query: 67 EAFLEGWEPTGSSYMVIRAPGMQALKIPMSKPCD---IADGVSVWEWSGSALDEGAEASN 123
Y+V++APGM L IP+ D + + V E + +DEG A+
Sbjct: 55 G------------YLVLKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAA 102
Query: 124 WFTNYLGKSSRLVRYNAESETR 145
W +N+ G R+++ + +
Sbjct: 103 WISNHAGVPCRILKVHPDMAEV 124
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 263 | |||
| d2exna1 | 128 | Hypothetical protein BB0938 {Bordetella bronchisep | 100.0 | |
| d1orua_ | 182 | Hypothetical protein YuaD {Bacillus subtilis [TaxI | 98.16 | |
| d1o65a_ | 233 | Hypothetical protein YiiM {Escherichia coli [TaxId | 95.92 | |
| d1orua_ | 182 | Hypothetical protein YuaD {Bacillus subtilis [TaxI | 91.76 |
| >d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: MOSC N-terminal domain-like superfamily: MOSC N-terminal domain-like family: MOSC N-terminal domain-like domain: Hypothetical protein BB0938 species: Bordetella bronchiseptica [TaxId: 518]
Probab=100.00 E-value=3.3e-35 Score=231.69 Aligned_cols=118 Identities=28% Similarity=0.517 Sum_probs=107.5
Q ss_pred EeeeeecccCCCCceeeceeeeeccccccCceeEEEecCCceEecCCCCceeEEEEeccCcccccCCCCCCCceEEEEeC
Q 024767 7 VTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEPTGSSYMVIRAP 86 (263)
Q Consensus 7 V~~L~~yPIKS~~g~~v~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~L~l~~p 86 (263)
|+.|++||||||+|++++ .||.|||+|||+|++|+|+|||++|+|++|++.++ ++.|+|++|
T Consensus 1 ~s~~~~~PIKsc~g~~~~------~gl~~DR~wmlvd~~G~fltqR~~P~La~i~~~~~------------~~~L~l~~p 62 (128)
T d2exna1 1 MSTTAYQPIAECGATTQS------EAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELR------------MGYLVLKAP 62 (128)
T ss_dssp CCCCCEEEETTTEEECCG------GGGGTCCSEEEEETTSCEECTTTCGGGGCCEEEEC------------SSEEEEECS
T ss_pred CcceeeecccccCCcccc------chhhhceeEEEECCCCCEEEcccCCcEEEEEEEEe------------CCEEEEEec
Confidence 478999999999999985 59999999999999999999999999999999985 478999999
Q ss_pred CCceeEEcCCCCC---CCcccEEEecccccccccchhHHHHHHHhhCCceEEEEecCCC
Q 024767 87 GMQALKIPMSKPC---DIADGVSVWEWSGSALDEGAEASNWFTNYLGKSSRLVRYNAES 142 (263)
Q Consensus 87 g~~~l~v~l~~~~---~~~~~~~vw~~~~~~~d~g~~~~~wlS~~Lg~~~rLv~~~~~~ 142 (263)
|++++.||++... .....+.+|++.+++++||+++++|||++||.+|+|+++.|+.
T Consensus 63 g~~~l~vpL~~~~~~~~~~~~v~vw~~~~~a~~~g~~~~~WfS~~LG~~~rLv~~~p~~ 121 (128)
T d2exna1 63 GMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDM 121 (128)
T ss_dssp SSCEEEEESSCCCSSCSCEEEEEETTEEEEEEECCHHHHHHHHHHTCSSEEEEEECTTT
T ss_pred CCCceeeccccccccccceEEEEEcCCeeEEEECChHHHHHHHHHhCCceEEEEECCCC
Confidence 9999999986542 2346789999999999999999999999999999999998764
|
| >d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|