Citrus Sinensis ID: 024770

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQVEGSKTHGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEccccccEEEEEEEEEccccccEEEEEccccccEEEEcccccEEccccEEEEEEEEccccccccccccccccccEEEEEEEEEcccccccHHHHccccccccEEEEEEEEEEcccccccHHHHHHHHHccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccEEEEcccHHcccccccccEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEcccccccHHHHccccccEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEcEEEEHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
maiadrksasdskgwgffklpfrqsgnssnttstsssashqhqnqsnqqvegskthgsssvsSVARsllpkrrrlkldpanklyfpyeagKQVRSAIKIKNtskshvafkfqttapkscfmrppgailapgeSLIATVFKFvelpennekpmyqksRDKFKIISMKVkadvdyvpelfdeQKDQTAAEQILRVVflnperpepALEKLKRQLADADAAVAarkkppedtgpriigeglvIDEWKERRERYLARQQVEGVDSV
Flexible Loop (DISEMBL)
maiadrksasdskgwgfFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQqvegskthgsssvssvarsllpkrrrlkldpanklyfpyeagkqvrSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVelpennekpmyqksrdkFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVaarkkppedtgpriigeglvidewKERRERYlarqqvegvdsv
Low Complexity Region (SEG)
MAIADRKSASDSKGWGFFKLPFRqsgnssnttstsssashqhqnqsnqqVEGSKTHGsssvssvArsllpkrrrlklDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLadadaavaaRKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
Disordered region (IsUnstruct)
**************WGFFK************************************************************ANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELP*************KFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL************************************IIGEGLVIDEWKE*****************
Disordered Region (DISOPRED)
***************************************************************************KLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE*N*****QKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF*******************************************VIDEWKERRERYLARQ*VE*****
Disordered Region (DISEMBL)
***********SKGWGFFKLPFRQ******************************************SLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQ***************EDTGPRIIGEGLVIDEWKERRERYL***********
Disordered Region (DISPRO)
***********SKGWGFFKLPFRQ********************************************LPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQVEGSKTHGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q8VYN2	295	Vesicle-associated protei	yes	no	1.0	0.888	0.644	1e-101
Q1ECE0	266	Vesicle-associated protei	no	no	0.977	0.962	0.660	2e-84
Q8LPQ7	287	Vesicle-associated protei	no	no	0.992	0.905	0.630	6e-84
Q9LVU1	220	Vesicle-associated protei	no	no	0.435	0.518	0.330	5e-09
Q8VZ95	256	Vesicle-associated protei	no	no	0.465	0.476	0.292	6e-09
Q9SHC8	239	Vesicle-associated protei	no	no	0.465	0.510	0.3	9e-09
Q84WW5	239	Vesicle-associated protei	no	no	0.450	0.493	0.296	3e-08
B9DHD7	386	Vesicle-associated protei	no	no	0.442	0.300	0.314	3e-06
Q9SYC9	571	Vesicle-associated protei	no	no	0.461	0.211	0.282	3e-06
P40075	244	Vesicle-associated membra	yes	no	0.267	0.286	0.4	3e-05

>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1

 Score =  369 bits (948), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/295 (64%), Positives = 216/295 (73%), Gaps = 33/295 (11%)

Query: 1   MAIADRKSASDSKG-WGFFKLPFRQSGNSSNTTSTSSSA--------------------- 38
           M + + K  SD KG WGFFK+PFR S    N  S+++++                     
Sbjct: 1   MTMTEEKPTSDGKGGWGFFKIPFRNSSGHRNAASSAATSPFPSGASSSSTSSHLHNHHQH 60

Query: 39  ---------SHQHQNQSNQQVEGSKTHG--SSSVSSVARSLLPKRRRLKLDPANKLYFPY 87
                         N  +    G   H   S SVSSVA+S LP +RRLKLDP+ KLYFPY
Sbjct: 61  HHQHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFLPTKRRLKLDPSEKLYFPY 120

Query: 88  EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 147
           E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFVE PEN
Sbjct: 121 EPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPEN 180

Query: 148 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEK 207
           NEKPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PER  PALEK
Sbjct: 181 NEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSNPALEK 240

Query: 208 LKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 262
           LKRQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 241 LKRQLAEADAAVEARKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGEGADSV 295

May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1

 Score =  311 bits (798), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 179/271 (66%), Positives = 214/271 (78%), Gaps = 15/271 (5%)

Query: 1   MAIADRKSASDSKGWGFFKL-PFRQSGNSSNTTSTSSSASHQHQNQSNQQVEGSKTHGSS 59
           M I DR++ S  K    F+L PF Q        ST+SS+S Q+ NQ+ +   G++    S
Sbjct: 1   MPIGDRQNPSVEKKKNLFRLCPFWQR------RSTTSSSSTQNPNQNYRSRHGNRNTDIS 54

Query: 60  SVS-------SVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQ 112
           +VS       SVARSLLP RRRL+LDP++ LYFPYE GKQVRSAIK+KNTSKSH AFKFQ
Sbjct: 55  AVSKPPLTMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQ 114

Query: 113 TTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK-PMYQKSRDKFKIISMKVKADV 171
           TTAPKSC+MRPPG +LAPGES+ ATVFKFVE PENNEK P+ QKS+ KFKI+S+KVK  V
Sbjct: 115 TTAPKSCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGV 174

Query: 172 DYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGP 231
           +YVPELFDEQKDQ A EQ+LRV+F++ +RP  ALEKLKRQL +A+AAV ARKKPP +TGP
Sbjct: 175 EYVPELFDEQKDQVAVEQVLRVIFIDADRPSAALEKLKRQLDEAEAAVEARKKPPPETGP 234

Query: 232 RIIGEGLVIDEWKERRERYLARQQVEGVDSV 262
           R++GEGLVIDEWKERRE+YLARQQVE VDS+
Sbjct: 235 RVVGEGLVIDEWKERREKYLARQQVESVDSL 265

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43 PE=2 SV=1

 Score =  310 bits (794), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 181/287 (63%), Positives = 211/287 (73%), Gaps = 27/287 (9%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSAS---------HQHQNQSNQQ-- 49
           MA+ + KS SD + WG FKLPFR S + + + S+SSS +         H +QN  +Q   
Sbjct: 1   MALTEDKSDSDGRRWGKFKLPFRNSNSQAPSASSSSSMATSSSSVTSSHLNQNYIHQSRH 60

Query: 50  --------VEG-SKTHGSS-----SVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRS 95
                   VEG  + H  S     S+SSVARSLLP +RRLKLDP+ KLYFPYE GKQVRS
Sbjct: 61  FQYHGPPVVEGLGQNHHQSAATIPSMSSVARSLLPTKRRLKLDPSAKLYFPYEPGKQVRS 120

Query: 96  AIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQK 155
           AIKIKNTSKSHVAFKFQTT PKSCFMRP GAILAPGE +IATVFKFVE PENNEKPM QK
Sbjct: 121 AIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFVEPPENNEKPMEQK 180

Query: 156 SRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADA 215
           S  KFKI+S+K+K   DY+PELF+EQKD  + EQ++RVVFL+PE P   +EKLK QLA+A
Sbjct: 181 SGVKFKIMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLDPENPNSMMEKLKSQLAEA 240

Query: 216 DAAVAARKKPPED-TGPRIIGEGLVIDEWKERRERYLARQQVEGVDS 261
           DAA  ARKK  E   GP+ IGEGLVIDEWK+RRERYLA+QQ  GVD+
Sbjct: 241 DAADEARKKASEGIVGPKPIGEGLVIDEWKQRRERYLAQQQ-GGVDA 286

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 7/121 (5%)

Query: 81  NKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140
           ++L F +E  KQ    +K+ N ++++VAFK +TT+PK  F+RP   ++ P +S I     
Sbjct: 15  DELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIR--- 71

Query: 141 FVELPENNEKPMYQKSRDKFKIISMKV--KADVDYVPE-LFDEQKDQTAAEQILRVVFLN 197
            V L    E P   + +DKF + S  V    DVD +P+  F +   +T  E  L+V ++ 
Sbjct: 72  -VTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYIT 130

Query: 198 P 198
           P
Sbjct: 131 P 131

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L ++P + L FP+E  KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P    
Sbjct: 23  LTVEPLD-LQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR--- 78

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQIL 191
            +T    V +    E P   + +DKF +  +     V   +  PE+F ++      E  L
Sbjct: 79  -STCEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKL 137

Query: 192 RVVFLNPERP 201
           RV ++ P RP
Sbjct: 138 RVTYVAPPRP 147

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 8/130 (6%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L +DP + L FP+E  KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P  S 
Sbjct: 6   LTIDPVD-LQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSS 64

Query: 135 IATVFKFVELPENNEKPMYQKSRDKF---KIISMKVKADVDYVPELFDEQKDQTAAEQIL 191
                  V +    E P   + +DKF    +++       D   E+F ++      E  L
Sbjct: 65  EV----LVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKL 120

Query: 192 RVVFLNPERP 201
           RVV++ P RP
Sbjct: 121 RVVYVAPPRP 130

Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 10/128 (7%)

Query: 82  KLYFPYEAGKQVRSAIKIKN-TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140
           +L FP+E  KQ   ++++ N T+   VAFK +TT P+   +RP   ++ PG+S   T   
Sbjct: 13  ELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVT--- 69

Query: 141 FVELPENNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFL- 196
            V +    E P+  + +DKF + ++ V       + + E+F+++  +   +  LRVV++ 
Sbjct: 70  -VTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIP 128

Query: 197 -NPERPEP 203
            NP  P P
Sbjct: 129 ANPPSPVP 136

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 8/124 (6%)

Query: 83  LYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 142
           L F  +  KQ    +++ NT+  +VAFK +TT+PK   +RP   ++AP  +   TV    
Sbjct: 13  LQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVI--- 69

Query: 143 ELPENNEKPMYQKSRDKFKIISMKVKA---DVDYVPELFDEQKDQTAAEQILRVVFLNP- 198
            +    E P     +DKF I S  V A   D D    +F + + +   E  LRV  + P 
Sbjct: 70  -MQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPS 128

Query: 199 ERPE 202
           + PE
Sbjct: 129 DSPE 132

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 10/131 (7%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L +DP + + FP E  K+V  ++ + N ++++VAFK +TT  K  ++RP   ++ P  S 
Sbjct: 177 LIIDPVD-VQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSC 235

Query: 135 IATVFKFVELPENNEKPMYQKSRDKF----KIISMKVKADVDYVPELFDEQKDQTAAEQI 190
              V     +    E P   + RDK     K++  +  A  D   E+F ++    A E  
Sbjct: 236 EVLVI----MQALKEAPADMQCRDKLLFQCKVVEPETTAK-DVTSEMFSKEAGHPAEETR 290

Query: 191 LRVVFLNPERP 201
           L+V+++ P +P
Sbjct: 291 LKVMYVTPPQP 301

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS2 PE=1 SV=3

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 5/75 (6%)

Query: 99  IKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ-KSR 157
           I N S   +AFK +TTAPK   +RP  A++APGE++   V  F+ L    E+P    K R
Sbjct: 27  ISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVI-FLGL---TEEPAADFKCR 82

Query: 158 DKFKIISMKVKADVD 172
           DKF +I++    D++
Sbjct: 83  DKFLVITLPSPYDLN 97

Targets proteins containing a FFAT motif to endoplasmic reticulum membranes. Regulates phospholipid biosynthesis by modulating the subcellular localization of the transcriptional repressor OPI1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
224116236	235	predicted protein [Populus trichocarpa]	0.816	0.910	0.870	1e-104
255567425	281	structural molecule, putative [Ricinus c	1.0	0.932	0.740	1e-102
359495700	264	PREDICTED: vesicle-associated protein 4-	0.992	0.984	0.793	1e-102
297804004	300	vesicle-associated membrane family prote	1.0	0.873	0.636	1e-100
18415696	295	vesicle-associated membrane family prote	1.0	0.888	0.644	1e-100
357475961	266	Vesicle-associated membrane protein-asso	0.992	0.977	0.735	1e-99
147801604	278	hypothetical protein VITISV_011094 [Viti	0.992	0.935	0.753	4e-99
356521293	269	PREDICTED: vesicle-associated protein 4-	0.988	0.962	0.735	8e-98
363806814	268	uncharacterized protein LOC100801956 [Gl	0.992	0.970	0.714	4e-97
449433896	256	PREDICTED: vesicle-associated protein 4-	0.973	0.996	0.749	6e-97

>gi|224116236|ref|XP_002317246.1| predicted protein [Populus trichocarpa] gi|222860311|gb|EEE97858.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/216 (87%), Positives = 199/216 (92%), Gaps = 2/216 (0%)

Query: 49  QVEGSKT--HGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSH 106
           Q+EGS    H S+SVSSVARSLLP RRRLKLDPA+KLYFPYE GKQVRSAI+IKNTSKSH
Sbjct: 20  QIEGSSNPPHPSNSVSSVARSLLPTRRRLKLDPASKLYFPYEPGKQVRSAIRIKNTSKSH 79

Query: 107 VAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMK 166
           VAFKFQTTAPKSCFMRPPGAILAPGES+IATVFKFVELPENNEKPM QKS+ KFKI+S+K
Sbjct: 80  VAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVELPENNEKPMEQKSKVKFKIMSLK 139

Query: 167 VKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPP 226
           VK  +DYVPELFDEQKDQ A EQILRV+FL+PERP PALEKLKRQLADADAAV ARKKPP
Sbjct: 140 VKGVMDYVPELFDEQKDQVAIEQILRVIFLDPERPSPALEKLKRQLADADAAVEARKKPP 199

Query: 227 EDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 262
           ED GPRIIGEGLVIDEWKERRERYLARQQ EGVDSV
Sbjct: 200 EDAGPRIIGEGLVIDEWKERRERYLARQQGEGVDSV 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567425|ref|XP_002524692.1| structural molecule, putative [Ricinus communis] gi|223536053|gb|EEF37711.1| structural molecule, putative [Ricinus communis]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/281 (74%), Positives = 225/281 (80%), Gaps = 19/281 (6%)

Query: 1   MAIADR----KSASDS-------------KGWGFFKLPFRQS-GNSSNTTSTSSSASHQH 42
           MAIAD     KS SD              K WGFFKLPFR S GN+  ++S +SS+S  H
Sbjct: 1   MAIADHHSNNKSPSDYNNNSYGNSNSNNNKVWGFFKLPFRGSNGNTVPSSSYTSSSSSTH 60

Query: 43  QNQSNQQVEGSKTHGSSSVSSVARS-LLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKN 101
           Q+ +  Q+EGS  H SS+  S     LLP RRRLKLDPA KLYFPYE GKQVRSAIKIKN
Sbjct: 61  QHSNTAQIEGSNLHASSNSVSSVARSLLPTRRRLKLDPATKLYFPYEPGKQVRSAIKIKN 120

Query: 102 TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFK 161
           TSKSHVAFKFQTTAPKSCFMRPPGAILAPGES+IATVFKFVE PENNEKP+ QKS+ KFK
Sbjct: 121 TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEHPENNEKPVEQKSKVKFK 180

Query: 162 IISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAA 221
           I+S+KV   +DYVPELF+EQKDQ A EQILRVVFL+PERP PALEKLKRQLADADAAV A
Sbjct: 181 IMSLKVNGMMDYVPELFEEQKDQIAMEQILRVVFLDPERPSPALEKLKRQLADADAAVEA 240

Query: 222 RKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 262
           RKKPPED GPRIIGEGLVIDEWKE RERYLARQQVEGVDSV
Sbjct: 241 RKKPPEDAGPRIIGEGLVIDEWKEGRERYLARQQVEGVDSV 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495700|ref|XP_002275178.2| PREDICTED: vesicle-associated protein 4-2 [Vitis vinifera] gi|297745648|emb|CBI40859.3| unnamed protein product [Vitis vinifera]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/266 (79%), Positives = 231/266 (86%), Gaps = 6/266 (2%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQ----NQSNQQVEGSKTH 56
           MA+ D++S SD K WGFFKLPFR  GN++ T S+SS++   H     NQSN QVEGS  H
Sbjct: 1   MAVPDQRSHSDGKVWGFFKLPFR--GNNTITMSSSSTSHSSHLQHHHNQSNMQVEGSNLH 58

Query: 57  GSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP 116
            S SVSSVARSLLP RRRL+LDP+NKLYFPYE GKQVRSAI+IKNTSKSHVAFKFQTTAP
Sbjct: 59  PSGSVSSVARSLLPTRRRLRLDPSNKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAP 118

Query: 117 KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPE 176
           KSCFMRPPGAILAPGESLIATVFKFVE PENNEKPM QKS+ KFKI+S+KVK  +DYVPE
Sbjct: 119 KSCFMRPPGAILAPGESLIATVFKFVEHPENNEKPMEQKSKVKFKIMSLKVKGPMDYVPE 178

Query: 177 LFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGE 236
           +FDE KDQ A EQILRVVFL+ ERP PAL+KLKRQLA+A+AAV ARKKPPED GPRIIGE
Sbjct: 179 MFDELKDQVAVEQILRVVFLDVERPSPALDKLKRQLAEAEAAVEARKKPPEDAGPRIIGE 238

Query: 237 GLVIDEWKERRERYLARQQVEGVDSV 262
           GLVIDEWKERRERYLARQQVEGVDSV
Sbjct: 239 GLVIDEWKERRERYLARQQVEGVDSV 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804004|ref|XP_002869886.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297315722|gb|EFH46145.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/300 (63%), Positives = 217/300 (72%), Gaps = 38/300 (12%)

Query: 1   MAIADRKSASDSKG-WGFFKLPFRQSGNSSNTTSTSSSASHQHQ---------------- 43
           M + + K  SD KG WGFFK+PFR S    N  S+++++                     
Sbjct: 1   MTMTEEKPTSDGKGGWGFFKIPFRNSSGHGNAASSAATSPFPSGASSSSTSSHLHNHHQH 60

Query: 44  -------------------NQSNQQVEGSKTHG--SSSVSSVARSLLPKRRRLKLDPANK 82
                              N  +    G   H   S SVSSVA+S LP +RRLKLDP+ K
Sbjct: 61  QHQQHHHHHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFLPTKRRLKLDPSEK 120

Query: 83  LYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 142
           LYFPYE GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFV
Sbjct: 121 LYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFV 180

Query: 143 ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 202
           E PENNEKPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PERP 
Sbjct: 181 EPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERPN 240

Query: 203 PALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 262
           PAL+KLKRQLA+ADAAV ARKKPPE+TGP+IIGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 241 PALDKLKRQLAEADAAVEARKKPPEETGPKIIGEGLVIDEWKERRERYLAQQQGEGADSV 300

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415696|ref|NP_567627.1| vesicle-associated membrane family protein [Arabidopsis thaliana] gi|75161506|sp|Q8VYN2.1|VAP42_ARATH RecName: Full=Vesicle-associated protein 4-2; AltName: Full=Plant VAP homolog 4-2; Short=AtPVA42; AltName: Full=VAMP-associated protein 4-2 gi|17979373|gb|AAL49912.1| putative membrane associated protein [Arabidopsis thaliana] gi|20465773|gb|AAM20375.1| putative membrane associated protein [Arabidopsis thaliana] gi|21592907|gb|AAM64857.1| putative membrane associated protein [Arabidopsis thaliana] gi|332659054|gb|AEE84454.1| vesicle-associated membrane family protein [Arabidopsis thaliana]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/295 (64%), Positives = 216/295 (73%), Gaps = 33/295 (11%)

Query: 1   MAIADRKSASDSKG-WGFFKLPFRQSGNSSNTTSTSSSA--------------------- 38
           M + + K  SD KG WGFFK+PFR S    N  S+++++                     
Sbjct: 1   MTMTEEKPTSDGKGGWGFFKIPFRNSSGHRNAASSAATSPFPSGASSSSTSSHLHNHHQH 60

Query: 39  ---------SHQHQNQSNQQVEGSKTHG--SSSVSSVARSLLPKRRRLKLDPANKLYFPY 87
                         N  +    G   H   S SVSSVA+S LP +RRLKLDP+ KLYFPY
Sbjct: 61  HHQHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFLPTKRRLKLDPSEKLYFPY 120

Query: 88  EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 147
           E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFVE PEN
Sbjct: 121 EPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPEN 180

Query: 148 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEK 207
           NEKPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PER  PALEK
Sbjct: 181 NEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSNPALEK 240

Query: 208 LKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 262
           LKRQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 241 LKRQLAEADAAVEARKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGEGADSV 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475961|ref|XP_003608266.1| Vesicle-associated membrane protein-associated protein A [Medicago truncatula] gi|87240479|gb|ABD32337.1| Major sperm protein [Medicago truncatula] gi|355509321|gb|AES90463.1| Vesicle-associated membrane protein-associated protein A [Medicago truncatula]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/268 (73%), Positives = 222/268 (82%), Gaps = 8/268 (2%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQ-----VEGSKT 55
           MA+A+ K  S+ K W FFKLPFR S  SS  T++SS  ++ H +  +       +EGS +
Sbjct: 1   MAVAEPKLHSEPKVWNFFKLPFRNSNTSSTNTTSSSVNNNLHHHHHHNPNSNTPLEGSTS 60

Query: 56  HGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA 115
           H S+SVSSVARSLLP RRRLKLDP+NKLYFPYE GKQVRSAI+IKNTSKS+VAFKFQTTA
Sbjct: 61  HTSNSVSSVARSLLPTRRRLKLDPSNKLYFPYEPGKQVRSAIRIKNTSKSNVAFKFQTTA 120

Query: 116 PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVP 175
           PKSCFMRPPGAILAPGES+IATVFKFVE PENNEKP  +KS  KFKI+S+KVK  +DYVP
Sbjct: 121 PKSCFMRPPGAILAPGESIIATVFKFVEQPENNEKP--EKSGLKFKIMSLKVKGSIDYVP 178

Query: 176 ELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIG 235
           ELFDEQKDQ A EQILRVVFL+PERP P LEKLKRQLADADAA+  RKKP ED GP+IIG
Sbjct: 179 ELFDEQKDQVAVEQILRVVFLDPERPSPILEKLKRQLADADAALEERKKPAEDAGPKIIG 238

Query: 236 EGLVIDEWKERRERYLARQQVE-GVDSV 262
           EGLVIDEWKERRERYLA+QQ +  VDSV
Sbjct: 239 EGLVIDEWKERRERYLAKQQGDVVVDSV 266

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801604|emb|CAN74544.1| hypothetical protein VITISV_011094 [Vitis vinifera]

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 211/280 (75%), Positives = 231/280 (82%), Gaps = 20/280 (7%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQ----NQSNQQVEGSKTH 56
           MA+ D++S SD K WGFFKLPFR  GN++ T S+SS++   H     NQSN QVEGS  H
Sbjct: 1   MAVPDQRSHSDGKVWGFFKLPFR--GNNTITMSSSSTSHSSHLQHHHNQSNMQVEGSNLH 58

Query: 57  GSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP 116
            S SVSSVARSLLP RRRL+LDP+NKLYFPYE GKQVRSAI+IKNTSKSHVAFKFQTTAP
Sbjct: 59  PSGSVSSVARSLLPTRRRLRLDPSNKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAP 118

Query: 117 KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPE 176
           KSCFMRPPGAILAPGESLIATVFKFVE PENNEKPM QKS+ KFKI+S+KVK  +DYVPE
Sbjct: 119 KSCFMRPPGAILAPGESLIATVFKFVEHPENNEKPMEQKSKVKFKIMSLKVKGPMDYVPE 178

Query: 177 LFDEQKDQTAAEQILRVVFLNPERPEP--------------ALEKLKRQLADADAAVAAR 222
           +FDE KDQ A EQILRVVFL+ ERP P              AL+KLKRQLA+A+AAV AR
Sbjct: 179 MFDELKDQVAVEQILRVVFLDVERPSPRMPIYEIXPLYPVKALDKLKRQLAEAEAAVEAR 238

Query: 223 KKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 262
           KKPPED GPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
Sbjct: 239 KKPPEDAGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521293|ref|XP_003529291.1| PREDICTED: vesicle-associated protein 4-2-like [Glycine max]

 Score =  362 bits (929), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 200/272 (73%), Positives = 223/272 (81%), Gaps = 13/272 (4%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQV---------E 51
           MA+AD K  S+ K W FFKLPFR S  ++NTT +S++  H H + ++            E
Sbjct: 1   MAVADPKPHSEPKVWNFFKLPFRHSA-ATNTTPSSANLHHLHHHHNHHHHHHNPNNLPLE 59

Query: 52  GSKTHGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKF 111
           GS +H S+SVSSVARSLLP RRRLKLDP+NKLYFPYE GKQVRSAI+IKNTSKS VAFKF
Sbjct: 60  GSTSHTSNSVSSVARSLLPTRRRLKLDPSNKLYFPYEPGKQVRSAIRIKNTSKSSVAFKF 119

Query: 112 QTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADV 171
           QTTAPKSCFMRPPGAILAPGES+IATVFKFVE PENNEKP  +KS  KFKI+S+KVK  +
Sbjct: 120 QTTAPKSCFMRPPGAILAPGESIIATVFKFVEQPENNEKP--EKSGLKFKIMSLKVKGSI 177

Query: 172 DYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGP 231
           DYVPELFDEQKDQ A EQILRVVFL+PERP PALEKL RQLADADAA+ ARKKP ED GP
Sbjct: 178 DYVPELFDEQKDQVAVEQILRVVFLDPERPCPALEKLNRQLADADAALEARKKPAEDAGP 237

Query: 232 RIIGEGLVIDEWKERRERYLARQQVE-GVDSV 262
           +IIGEGLVIDEWKERRERYLA+QQ E  VDSV
Sbjct: 238 KIIGEGLVIDEWKERRERYLAKQQGEVVVDSV 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806814|ref|NP_001242542.1| uncharacterized protein LOC100801956 [Glycine max] gi|255640215|gb|ACU20398.1| unknown [Glycine max]

 Score =  360 bits (923), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 193/270 (71%), Positives = 221/270 (81%), Gaps = 10/270 (3%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQ-------VEGS 53
           MA+AD K  S+ K W FFKLPFR S  ++ T S+++     H + ++         +EGS
Sbjct: 1   MAVADPKPHSEPKVWNFFKLPFRHSATTNTTPSSANLHHLHHHHHNHHHDPNNNLPLEGS 60

Query: 54  KTHGSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT 113
            ++ S+SVSSVARSLLP RRRLKLDP+NKLYFPYE GKQVRSAI+IKNTSKS+VAFKFQT
Sbjct: 61  TSNTSNSVSSVARSLLPTRRRLKLDPSNKLYFPYEPGKQVRSAIRIKNTSKSNVAFKFQT 120

Query: 114 TAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDY 173
           TAPKSCFMRPPGAILAPGES+IATVFKFVE PENNEKP  +K+  KFK++S+KVK  +DY
Sbjct: 121 TAPKSCFMRPPGAILAPGESIIATVFKFVEQPENNEKP--EKTGLKFKVMSLKVKGLIDY 178

Query: 174 VPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRI 233
           VPELFDEQKDQ A EQILRVVFL+PERP PALEKL RQLADA AA+ ARKKP ED GP+I
Sbjct: 179 VPELFDEQKDQVAVEQILRVVFLDPERPCPALEKLNRQLADAGAALEARKKPAEDAGPKI 238

Query: 234 IGEGLVIDEWKERRERYLARQQVE-GVDSV 262
           IGEGLVIDEWKERRERYLA+QQ E  VDSV
Sbjct: 239 IGEGLVIDEWKERRERYLAKQQGEVAVDSV 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433896|ref|XP_004134732.1| PREDICTED: vesicle-associated protein 4-2-like [Cucumis sativus]

 Score =  359 bits (922), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 197/263 (74%), Positives = 226/263 (85%), Gaps = 8/263 (3%)

Query: 1   MAIADRKSASDSKGWGFFKLPFRQSGNSSNTTSTSSSASHQHQNQSNQQVEGSKTHGSSS 60
           MA+ D+KS SD K WGF K  F+   +S+   +TSS  SHQ    ++  VEG+  H S+S
Sbjct: 1   MAVEDQKSTSDGKVWGFLKQTFK---HSTGGATTSSRTSHQ----THPPVEGTNPHTSAS 53

Query: 61  VSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCF 120
           VSSVARSLLP RRRLKLDP+NKL+FPYE GKQVRSAI IKNTSKS+VAFKFQTTAPKSCF
Sbjct: 54  VSSVARSLLPTRRRLKLDPSNKLFFPYEPGKQVRSAIGIKNTSKSYVAFKFQTTAPKSCF 113

Query: 121 MRPPGAILAPGESLIATVFKFVELPENNEKPMYQK-SRDKFKIISMKVKADVDYVPELFD 179
           MRPPGAILAPGES+IATVFKFVE+PE+NEKP+ QK +R KFKI+S+KVK  +DYVPELFD
Sbjct: 114 MRPPGAILAPGESIIATVFKFVEVPESNEKPVDQKNNRVKFKIMSLKVKGQMDYVPELFD 173

Query: 180 EQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLV 239
           EQKDQ + EQILRVVFL+PERP  ALEKLKRQLA+ADAA+ ARKKPPE++GP+IIGEGLV
Sbjct: 174 EQKDQVSIEQILRVVFLDPERPNAALEKLKRQLAEADAALEARKKPPEESGPKIIGEGLV 233

Query: 240 IDEWKERRERYLARQQVEGVDSV 262
           IDEWKERRERYLA+QQVEGVDSV
Sbjct: 234 IDEWKERRERYLAKQQVEGVDSV 256

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
UNIPROTKB|Q6YZ10	233	P0473D02.15 "cDNA clone:001-01	0.702	0.789	0.777	7.3e-75
TAIR|locus:2166582	266	MAMI "membrane-associated mann	0.706	0.695	0.741	1.8e-74
TAIR|locus:2138401	287	AT4G05060 [Arabidopsis thalian	0.698	0.637	0.713	1.2e-71
TAIR|locus:2171594	220	AT5G47180 [Arabidopsis thalian	0.465	0.554	0.317	4.5e-11
TAIR|locus:2055557	239	PVA12 "plant VAP homolog 12" [	0.473	0.518	0.308	1.8e-09
TAIR|locus:2101766	256	VAP27-1 "VAMP/SYNAPTOBREVIN-AS	0.438	0.449	0.295	6.2e-09
TAIR|locus:2126921	239	AT4G00170 [Arabidopsis thalian	0.450	0.493	0.296	9.8e-09
UNIPROTKB|Q5F419	151	VAPA "Uncharacterized protein"	0.477	0.827	0.284	2.1e-08
TAIR|locus:2008231	637	AT1G51270 [Arabidopsis thalian	0.469	0.193	0.283	6.7e-07
TAIR|locus:2025585	386	VAP27-2 "vamp/synaptobrevin-as	0.442	0.300	0.314	1.4e-06

UNIPROTKB|Q6YZ10 P0473D02.15 "cDNA clone:001-014-D04, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 143/184 (77%), Positives = 159/184 (86%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP +KL+FPYE GKQVRSA+KIKN SKSHVAFKFQTTAPKSCFMRPPG ILAPGES+IAT
Sbjct:    49 DPPSKLFFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIAT 108

Query:   138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLN 197
             VFKFVE PENNEKP+ QK + KFKI+S+KVK  ++YVPELFDEQK+Q A EQILRVVFL+
Sbjct:   109 VFKFVEHPENNEKPLDQKCKVKFKIVSLKVKGPMEYVPELFDEQKNQVAVEQILRVVFLD 168

Query:   198 PERPEPALEKLKRQLXXXXXXXXXRKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVE 257
              ER  P ++KLKRQL         RKKPPEDTGPRI+GEGLVIDEWKERRERYLARQQ+E
Sbjct:   169 AERQTPQMDKLKRQLAEAEAALEARKKPPEDTGPRIVGEGLVIDEWKERRERYLARQQIE 228

Query:   258 GVDS 261
             GVDS
Sbjct:   229 GVDS 232

GO:0009739 "response to gibberellin stimulus" evidence=IMP

TAIR|locus:2166582 MAMI "membrane-associated mannitol-induced" [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
 Identities = 138/186 (74%), Positives = 159/186 (85%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP++ LYFPYE GKQVRSAIK+KNTSKSH AFKFQTTAPKSC+MRPPG +LAPGES+ AT
Sbjct:    80 DPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAPGESVFAT 139

Query:   138 VFKFVELPENNEK-PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL 196
             VFKFVE PENNEK P+ QKS+ KFKI+S+KVK  V+YVPELFDEQKDQ A EQ+LRV+F+
Sbjct:   140 VFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPELFDEQKDQVAVEQVLRVIFI 199

Query:   197 NPERPEPALEKLKRQLXXXXXXXXXRKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQV 256
             + +RP  ALEKLKRQL         RKKPP +TGPR++GEGLVIDEWKERRE+YLARQQV
Sbjct:   200 DADRPSAALEKLKRQLDEAEAAVEARKKPPPETGPRVVGEGLVIDEWKERREKYLARQQV 259

Query:   257 EGVDSV 262
             E VDS+
Sbjct:   260 ESVDSL 265

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006970 "response to osmotic stress" evidence=IEP

TAIR|locus:2138401 AT4G05060 [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
 Identities = 132/185 (71%), Positives = 148/185 (80%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP+ KLYFPYE GKQVRSAIKIKNTSKSHVAFKFQTT PKSCFMRP GAILAPGE +IAT
Sbjct:   103 DPSAKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIAT 162

Query:   138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLN 197
             VFKFVE PENNEKPM QKS  KFKI+S+K+K   DY+PELF+EQKD  + EQ++RVVFL+
Sbjct:   163 VFKFVEPPENNEKPMEQKSGVKFKIMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLD 222

Query:   198 PERPEPALEKLKRQLXXXXXXXXXRKKPPED-TGPRIIGEGLVIDEWKERRERYLARQQV 256
             PE P   +EKLK QL         RKK  E   GP+ IGEGLVIDEWK+RRERYLA+QQ 
Sbjct:   223 PENPNSMMEKLKSQLAEADAADEARKKASEGIVGPKPIGEGLVIDEWKQRRERYLAQQQ- 281

Query:   257 EGVDS 261
              GVD+
Sbjct:   282 GGVDA 286

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 41/129 (31%), Positives = 68/129 (52%)

Query:    81 NKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140
             ++L F +E  KQ    +K+ N ++++VAFK +TT+PK  F+RP   ++ P +S I  V  
Sbjct:    15 DELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRV-- 72

Query:   141 FVELPENNEKPMYQKSRDKFKIISMKVK--ADVDYVPE-LFDEQKDQTAAEQILRVVFLN 197
                L    E P   + +DKF + S  V    DVD +P+  F +   +T  E  L+V ++ 
Sbjct:    73 --TLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYIT 130

Query:   198 PERPEPALE 206
             P   + + E
Sbjct:   131 PSTTQRSSE 139

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 41/133 (30%), Positives = 66/133 (49%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP + L FP+E  KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P  S  + 
Sbjct:     9 DPVD-LQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSS--SE 65

Query:   138 VFKFVELPENNEKPMYQKSRDKFK---IISMKVKADVDYVPELFDEQKDQTAAEQILRVV 194
             V   V +    E P   + +DKF    +++       D   E+F ++      E  LRVV
Sbjct:    66 VL--VTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVV 123

Query:   195 FLNPERP-EPALE 206
             ++ P RP  P  E
Sbjct:   124 YVAPPRPPSPVRE 136

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006605 "protein targeting" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 36/122 (29%), Positives = 60/122 (49%)

Query:    83 LYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 142
             L FP+E  KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P     +T    V
Sbjct:    30 LQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR----STCEVLV 85

Query:   143 ELPENNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFLNPE 199
              +    E P   + +DKF +  +     V   +  PE+F ++      E  LRV ++ P 
Sbjct:    86 TMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPP 145

Query:   200 RP 201
             RP
Sbjct:   146 RP 147

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006886 "intracellular protein transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 9.8e-09, P = 9.8e-09
 Identities = 38/128 (29%), Positives = 68/128 (53%)

Query:    82 KLYFPYEAGKQVRSAIKIKN-TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140
             +L FP+E  KQ   ++++ N T+   VAFK +TT P+   +RP   ++ PG+S   TV  
Sbjct:    13 ELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTV-- 70

Query:   141 FVELPENNEKPMYQKSRDKFKIISMKVK---ADVDYVPELFDEQKDQTAAEQILRVVFL- 196
                +    E P+  + +DKF + ++ V       + + E+F+++  +   +  LRVV++ 
Sbjct:    71 --TMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIP 128

Query:   197 -NPERPEP 203
              NP  P P
Sbjct:   129 ANPPSPVP 136

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q5F419 VAPA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 128 (50.1 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 37/130 (28%), Positives = 61/130 (46%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP   L F       V + +K++N S   V FK +TTAP+   +RP   I+ PG S+I +
Sbjct:    17 DPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSSVIVS 76

Query:   138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLN 197
             V     L   +  P  +KS+ KF + ++    ++  +  ++ E K     +  LR VF  
Sbjct:    77 VM----LQPFDYDPN-EKSKHKFMVQTIYAPPNISDMEAVWKEAKPDELMDSKLRCVFEM 131

Query:   198 PERPEPALEK 207
             P   +  + K
Sbjct:   132 PNENDKLVSK 141

GO:0005198 "structural molecule activity" evidence=IEA

TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 38/134 (28%), Positives = 66/134 (49%)

Query:    78 DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
             DP + + FP E  K+V  ++ + N ++++VAFK +TT  K  ++RP   ++ P  S    
Sbjct:   180 DPVD-VQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSCEVL 238

Query:   138 VFKFVELPENNEKPMYQKSRDKF----KIISMKVKADVDYVPELFDEQKDQTAAEQILRV 193
             V     +    E P   + RDK     K++  +  A  D   E+F ++    A E  L+V
Sbjct:   239 VI----MQALKEAPADMQCRDKLLFQCKVVEPETTAK-DVTSEMFSKEAGHPAEETRLKV 293

Query:   194 VFLNPERP-EPALE 206
             +++ P +P  P  E
Sbjct:   294 MYVTPPQPPSPVQE 307

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 39/124 (31%), Positives = 59/124 (47%)

Query:    83 LYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 142
             L F  +  KQ    +++ NT+  +VAFK +TT+PK   +RP   ++AP  +   TV    
Sbjct:    13 LQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVI--- 69

Query:   143 ELPENNEKPMYQKSRDKFKIISMKVKA---DVDYVPELFDEQKDQTAAEQILRVVFLNP- 198
              +    E P     +DKF I S  V A   D D    +F + + +   E  LRV  + P 
Sbjct:    70 -MQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPS 128

Query:   199 ERPE 202
             + PE
Sbjct:   129 DSPE 132

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VYN2	VAP42_ARATH	No assigned EC number	0.6440	1.0	0.8881	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
pfam00635	109	pfam00635, Motile_Sperm, MSP (Major sperm protein)	1e-26
COG5066	242	COG5066, SCS2, VAMP-associated protein involved in	2e-05

>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain

 Score = 99.4 bits (248), Expect = 1e-26
 Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 5/110 (4%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L +DP + L+F     KQ  S + + N S   VAFK +TT PK   +RP   IL PGES+
Sbjct: 2   LTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGESV 61

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 184
             T+ +    P + E    +K  DKF I   +   D     E F      
Sbjct: 62  TITITR---QPFDKEPGDPKK--DKFVIQYTEAPDDAKDAKEAFKRAWKN 106

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109

>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           +++ P  +  F      + +    ++N S   V FK +TTAPK   +RP   ++ P  ++
Sbjct: 3   VEISP--QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTV 60

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKAD 170
              V   +      E     K RDKF I S +    
Sbjct: 61  EVEV---ILQGLTEEPAPDFKCRDKFLIQSYRFDWR 93

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
KOG0439	218	consensus VAMP-associated protein involved in inos	99.97
COG5066	242	SCS2 VAMP-associated protein involved in inositol	99.93
PF00635	109	Motile_Sperm: MSP (Major sperm protein) domain; In	99.88
PF14874	102	PapD-like: Flagellar-associated PapD-like	98.32
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	96.2
PF14646	426	MYCBPAP: MYCBP-associated protein family	92.97
PRK09918	230	putative fimbrial chaperone protein; Provisional	92.2
PF07610	45	DUF1573: Protein of unknown function (DUF1573); In	89.97
PRK09926	246	putative chaperone protein EcpD; Provisional	88.86
PRK15299	227	fimbrial chaperone protein StiB; Provisional	87.49
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	87.34
PRK15295	226	fimbrial assembly chaperone SthB; Provisional	87.04
PRK15249	253	fimbrial chaperone protein StbB; Provisional	85.79
PRK11385	236	putativi pili assembly chaperone; Provisional	85.28
PRK15211	229	fimbrial chaperone protein PefD; Provisional	83.82
PRK15192	234	fimbrial chaperone BcfG; Provisional	83.4
PRK15188	228	fimbrial chaperone protein BcfB; Provisional	82.22

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.3e-30  Score=229.03  Aligned_cols=188  Identities=35%  Similarity=0.501  Sum_probs=164.2

Q ss_pred             CCCCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCC
Q 024770           69 LPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENN  148 (262)
Q Consensus        69 l~~~~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~  148 (262)
                      +..+.+|.|+|..+|.|.++..+++.+.|+|+|+++.+||||||||+|++|||||+.|+|.||+++.|.|.+   +| ..
T Consensus         3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~---q~-~~   78 (218)
T KOG0439|consen    3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTH---QP-FE   78 (218)
T ss_pred             ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEe---cc-Cc
Confidence            356788999998899999999999999999999999999999999999999999999999999999999988   66 44


Q ss_pred             CCCCCCCCCCeEEEEEEEeCCC-CCchhhhhhccC--CCcceeEEEEEEEeCCCCCChHHHHH---HhhhhhHHHHHHHh
Q 024770          149 EKPMYQKSRDKFKIISMKVKAD-VDYVPELFDEQK--DQTAAEQILRVVFLNPERPEPALEKL---KRQLADADAAVAAR  222 (262)
Q Consensus       149 e~p~~~k~kDKFlVqS~~v~~~-~d~~~elfk~~~--~~~i~e~kLrVvf~~p~~psp~~e~l---~~~l~ea~~~~~a~  222 (262)
                      ..|.+++|+|||+||++.++.+ .....++|+..+  +..+.+.+++|.|+.|..+..+.+..   .++.++.++...+.
T Consensus        79 ~~P~d~~~r~kF~v~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (218)
T KOG0439|consen   79 KSPPDFKSRHKFLIQSLKAPPPTTRDVVDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKLQKAKKKEAEKEAFGEAT  158 (218)
T ss_pred             cCchhhcccceEEEEEEecCCccccchhhhccccccccccccceeeEEEeeCCCCCcccccccccccccCCccccccccc
Confidence            5578899999999999999875 667899999988  78899999999999988776665555   66777778888888


Q ss_pred             cCCCCCC---CCcccccccchhhH------------------HHHHHHHHHHhhccccC
Q 024770          223 KKPPEDT---GPRIIGEGLVIDEW------------------KERRERYLARQQVEGVD  260 (262)
Q Consensus       223 k~~~~~~---~p~~~~e~~~i~~~------------------~~~r~~~~~~~~~~~~~  260 (262)
                      +......   .+...++.+++++|                  +++++++++.+|.+...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (218)
T KOG0439|consen  159 KEASDGEVCVKSKEFGEKLELKEELKAFKLKANKVDEERLLKKKKEGRLLAELQAELVI  217 (218)
T ss_pred             cccCcccccchhhhhhccccchhhhhccccccccccccchhhhhhhHHHHHhhhhhhcc
Confidence            8776654   36678899999999                  88999999999987654

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

Probab=99.93  E-value=8.1e-26  Score=200.25  Aligned_cols=118  Identities=22%  Similarity=0.324  Sum_probs=108.7

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ  154 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~p~~~  154 (262)
                      |.|+|  .+.|+-++....++.+.|.|++..+|+||||||+|+.||||||.|+|+|++++.|.|+|   ++..+|+-+|.
T Consensus         3 veisp--~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVil---q~l~eEpapdf   77 (242)
T COG5066           3 VEISP--QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVIL---QGLTEEPAPDF   77 (242)
T ss_pred             eEecC--ceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEe---eccccCCCCCc
Confidence            67888  48888888999999999999999999999999999999999999999999999999999   88889998999


Q ss_pred             CCCCeEEEEEEEeCCCC--CchhhhhhccCCCcceeEEEEEEEeC
Q 024770          155 KSRDKFKIISMKVKADV--DYVPELFDEQKDQTAAEQILRVVFLN  197 (262)
Q Consensus       155 k~kDKFlVqS~~v~~~~--d~~~elfk~~~~~~i~e~kLrVvf~~  197 (262)
                      +|+||||||++..+.+.  .+..++|....+.-+.++||||+|..
T Consensus        78 KCrdKFLiqs~~~~~~l~g~d~ad~wt~~sk~~i~~rkIrcvyse  122 (242)
T COG5066          78 KCRDKFLIQSYRFDWRLSGSDFADHWTSSSKKPIWTRKIRCVYSE  122 (242)
T ss_pred             cccceeEEEEeccChhhccchHHHHHHhhccccchhhheeEEeec
Confidence            99999999999997654  45699999998888999999999974

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm

Probab=99.88  E-value=2.3e-22  Score=157.43  Aligned_cols=102  Identities=28%  Similarity=0.457  Sum_probs=81.6

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ  154 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~p~~~  154 (262)
                      |.|+|.+.|.|.++.++...+.|+|+|+++.+||||||||+|.+|+|+|+.|+|+||+++.|.|++   +|.....  ..
T Consensus         2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~---~~~~~~~--~~   76 (109)
T PF00635_consen    2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITF---QPFDFEP--SN   76 (109)
T ss_dssp             CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE----SSSTTT--TS
T ss_pred             eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEE---EecccCC--CC
Confidence            789999999999999999999999999999999999999999999999999999999999999998   5543322  12


Q ss_pred             CCCCeEEEEEEEeCCCCC----chhhhhhcc
Q 024770          155 KSRDKFKIISMKVKADVD----YVPELFDEQ  181 (262)
Q Consensus       155 k~kDKFlVqS~~v~~~~d----~~~elfk~~  181 (262)
                      ..+|||+|+++.++++..    .+..+|++.
T Consensus        77 ~~~dkf~I~~~~~~~~~~~~~~~~~~~~~~~  107 (109)
T PF00635_consen   77 KKKDKFLIQSIVVPDNATDPKKDFKQIWKNG  107 (109)
T ss_dssp             TSSEEEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred             CCCCEEEEEEEEcCCCccchhhhHHHHHhcc
Confidence            239999999999977653    345666654

These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=98.32  E-value=6.3e-06  Score=64.01  Aligned_cols=66  Identities=27%  Similarity=0.427  Sum_probs=58.5

Q ss_pred             cEEecCCCceEeecC-CCCeEEEEEEEEcCCCCeEEEEEeecC--CCceeecCCceeeCCCCeEEEEEEe
Q 024770           74 RLKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTA--PKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        74 lL~IdP~~~L~F~~e-~~k~~~s~LtL~N~S~~~VAFKVKTTa--Pk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      .|.++|. .|.|-.= .|......|+|+|.+..+..|+|+.-.  ...|.|.|..|+|+||+++.|.|.+
T Consensus         3 ~l~v~P~-~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~   71 (102)
T PF14874_consen    3 TLEVSPK-ELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTF   71 (102)
T ss_pred             EEEEeCC-EEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEE
Confidence            5899997 9999754 477889999999999999999997643  5689999999999999999999998

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=96.20  E-value=0.11  Score=41.67  Aligned_cols=62  Identities=21%  Similarity=0.391  Sum_probs=51.0

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecC----C-----CceeecCCceeeCCCCeEEEEEEe
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA----P-----KSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTa----P-----k~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      |.|+|. .+.|....   ....++|+|.++.++.+.+....    +     .-|.|-|+.-.|+||++..|.|..
T Consensus         2 i~i~~t-rii~~~~~---~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~   72 (122)
T PF00345_consen    2 IQISPT-RIIFNESQ---RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR   72 (122)
T ss_dssp             EEESSS-EEEEETTS---SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE
T ss_pred             EEEccE-EEEEeCCC---CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe
Confidence            678886 78887532   36899999999999999987654    1     268999999999999999999954

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

>PF14646 MYCBPAP: MYCBP-associated protein family

Probab=92.97  E-value=2.2  Score=41.78  Aligned_cols=118  Identities=14%  Similarity=0.294  Sum_probs=78.2

Q ss_pred             EEecCCCceEeecCCCCeEEEEEE-EEcCCCCeEEEEEeec------------CCCceeecCCceeeCCCCeEEEEEEee
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIK-IKNTSKSHVAFKFQTT------------APKSCFMRPPGAILAPGESLIATVFKF  141 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~Lt-L~N~S~~~VAFKVKTT------------aPk~Y~VRPn~GiI~Pgesv~I~Vtl~  141 (262)
                      ..+.+.-.|.|...++......|. |.|.+...|-|.-+--            ....|+.....|+|.||++..|.|+. 
T Consensus       231 ~~~~~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F-  309 (426)
T PF14646_consen  231 PEVSISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMF-  309 (426)
T ss_pred             CccCcceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEE-
Confidence            445555589999999987777777 9999999999984332            24568899999999999999999997 


Q ss_pred             ccCCCCCCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCCCCChHHHHHHhhhh
Q 024770          142 VELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLA  213 (262)
Q Consensus       142 v~qp~~~e~p~~~k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVvf~~p~~psp~~e~l~~~l~  213 (262)
                        +|...     .-.+....+..-         +.+|.    ......+|+.+-++|..-....+.+++.|+
T Consensus       310 --~s~~~-----Gif~E~W~L~t~---------P~l~~----~~~l~v~L~G~~~~~~~~~~~~~~~~~~l~  361 (426)
T PF14646_consen  310 --KSRKV-----GIFKERWELRTF---------PPLFG----GASLTVRLHGVCTPPDEYLDKRKMLEEELA  361 (426)
T ss_pred             --eCCCc-----eEEEEEEEEEEe---------ccccC----CCceEEEEEEEEcCchHhHHHHHHHHHHHH
Confidence              45321     223444444442         22333    222466777777666444444555555443

>PRK09918 putative fimbrial chaperone protein; Provisional

Probab=92.20  E-value=2.6  Score=38.10  Aligned_cols=63  Identities=17%  Similarity=0.214  Sum_probs=48.4

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCC-----CceeecCCceeeCCCCeEEEEEEe
Q 024770           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP-----KSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        74 lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaP-----k~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      -|.+.|. .+.|....   ...+|+|+|.++.++...+.....     .-|.|-|+.-.|+||+...|.|.+
T Consensus        25 ~v~l~~t-Rvi~~~~~---~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~   92 (230)
T PRK09918         25 GMVPETS-VVIVEESD---GEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFIL   92 (230)
T ss_pred             eEEEccE-EEEEECCC---CeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEE
Confidence            3778886 77777533   358999999998876665543221     249999999999999999999987

>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini

Probab=89.97  E-value=1.2  Score=30.23  Aligned_cols=42  Identities=26%  Similarity=0.184  Sum_probs=33.9

Q ss_pred             EEEEcCCCCeE-EEEEeecCCCceeecCCceeeCCCCeEEEEEE
Q 024770           97 IKIKNTSKSHV-AFKFQTTAPKSCFMRPPGAILAPGESLIATVF  139 (262)
Q Consensus        97 LtL~N~S~~~V-AFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vt  139 (262)
                      ++|+|.++.++ ..+|+|+ =+-..+......|.||++..|.|+
T Consensus         2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~   44 (45)
T PF07610_consen    2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVT   44 (45)
T ss_pred             EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEE
Confidence            67999998654 5667665 577778888899999999999986

>PRK09926 putative chaperone protein EcpD; Provisional

Probab=88.86  E-value=8.8  Score=35.07  Aligned_cols=63  Identities=6%  Similarity=0.185  Sum_probs=48.6

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCC----------ceeecCCceeeCCCCeEEEEEEe
Q 024770           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPK----------SCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        74 lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk----------~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      -|.|+|. .+.|....   -..+|+|.|.++.++.--.-....+          -|.|-|+.-.|+||+...|.|.+
T Consensus        26 ~i~l~~T-RvI~~~~~---~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~   98 (246)
T PRK09926         26 DIVISGT-RIIYKSDQ---KDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMY   98 (246)
T ss_pred             eEEeCce-EEEEeCCC---ceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEe
Confidence            4888886 78887533   3589999999988766554332211          29999999999999999999997

>PRK15299 fimbrial chaperone protein StiB; Provisional

Probab=87.49  E-value=15  Score=33.04  Aligned_cols=63  Identities=14%  Similarity=0.266  Sum_probs=46.6

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecC--------CCceeecCCceeeCCCCeEEEEEEe
Q 024770           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA--------PKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        74 lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTa--------Pk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      -|.|+|. .+.|....   -..+|+|.|.++.++.-..-...        ..-|.|-|+.-.|+||+...|.|..
T Consensus        23 ~i~l~~T-Rvi~~~~~---~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~   93 (227)
T PRK15299         23 GINIGTT-RVIFHGDA---KDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIR   93 (227)
T ss_pred             eEEECce-EEEEeCCC---cEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEE
Confidence            3778886 77776542   36899999998876544432211        1239999999999999999999987

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=87.34  E-value=1.8  Score=34.50  Aligned_cols=67  Identities=15%  Similarity=0.274  Sum_probs=38.8

Q ss_pred             EEecCCCceEee-cCCCC-eEEEEEEEEcCCCCeEEEEEeecCCCceee-cCCce-eeCCCCeEEEEEEee
Q 024770           75 LKLDPANKLYFP-YEAGK-QVRSAIKIKNTSKSHVAFKFQTTAPKSCFM-RPPGA-ILAPGESLIATVFKF  141 (262)
Q Consensus        75 L~IdP~~~L~F~-~e~~k-~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~V-RPn~G-iI~Pgesv~I~Vtl~  141 (262)
                      +.|-+..-..|. -..|. .-.-.|+|.|.+..+..|.|+...+..+.+ .|... -|+||++..+.|++.
T Consensus        13 ~~V~rdr~~ly~~~~dg~I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~   83 (118)
T PF11614_consen   13 LNVLRDRGPLYRELSDGSIRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVT   83 (118)
T ss_dssp             EEEEE-SS---------SEEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEE
T ss_pred             EEEEecCCCcEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEE
Confidence            444444333344 33333 445799999999999999999988888888 66555 499999999988873

>PRK15295 fimbrial assembly chaperone SthB; Provisional

Probab=87.04  E-value=11  Score=34.12  Aligned_cols=60  Identities=18%  Similarity=0.273  Sum_probs=45.6

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEee--c--C-----CCceeecCCceeeCCCCeEEEEEEe
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT--T--A-----PKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKT--T--a-----Pk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      |.+++. .+.|....   -..+|+|.|.++.+  |=|++  .  .     ..-|.|-|+.=.|+||+...|.|..
T Consensus        21 i~l~~T-RvI~~~~~---~~~si~i~N~~~~p--~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~   89 (226)
T PRK15295         21 IVVGGT-RLVFDGNN---DESSINVENKDSKA--NLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIR   89 (226)
T ss_pred             EEeCce-EEEEeCCC---ceeEEEEEeCCCCc--EEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEE
Confidence            778886 77777533   35899999998875  44553  1  1     1249999999999999999999987

>PRK15249 fimbrial chaperone protein StbB; Provisional

Probab=85.79  E-value=8.1  Score=35.53  Aligned_cols=62  Identities=15%  Similarity=0.251  Sum_probs=46.8

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecC------C-----CceeecCCceeeCCCCeEEEEEEe
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA------P-----KSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTa------P-----k~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      |.|+|. .+.|....   -..+|+|.|.++.++....-+.+      |     .-|.|-|+.--|+||+...|.|.+
T Consensus        30 l~l~~T-Rviy~~~~---~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~  102 (253)
T PRK15249         30 VTILGS-RIIYPSTA---SSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIY  102 (253)
T ss_pred             EEeCce-EEEEeCCC---cceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEE
Confidence            788886 77776433   35799999998876555442211      1     139999999999999999999997

>PRK11385 putativi pili assembly chaperone; Provisional

Probab=85.28  E-value=17  Score=33.18  Aligned_cols=63  Identities=19%  Similarity=0.362  Sum_probs=45.8

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeec------------CCCceeecCCceeeCCCCeEEEEEEe
Q 024770           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT------------APKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        74 lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTT------------aPk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      -|.+++. -+.|+..   ....+|+|.|.++.++.=-....            ...-|.|-|+.=-|+||+...|.|.+
T Consensus        27 ~v~l~~T-RvIy~~~---~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~  101 (236)
T PRK11385         27 GVVVGGT-RFIFPAD---RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLR  101 (236)
T ss_pred             eEEeCce-EEEEcCC---CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEE
Confidence            3677775 6777653   23689999999988643333111            11249999999999999999999997

>PRK15211 fimbrial chaperone protein PefD; Provisional

Probab=83.82  E-value=11  Score=34.39  Aligned_cols=62  Identities=13%  Similarity=0.161  Sum_probs=45.6

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecC------CCceeecCCceeeCCCCeEEEEEEe
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA------PKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTa------Pk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      |.+++. -+.|+...   -..+|+|.|.++.++.-......      .--|.|.|+.=.|+||+...|.|.+
T Consensus        24 v~l~~T-RvIy~~~~---~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~   91 (229)
T PRK15211         24 FVLNGT-RFIYDEGR---KNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMK   91 (229)
T ss_pred             EEECce-EEEEcCCC---ceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence            677775 67776533   36899999999876443332211      1249999999999999999999997

>PRK15192 fimbrial chaperone BcfG; Provisional

Probab=83.40  E-value=21  Score=32.65  Aligned_cols=60  Identities=12%  Similarity=0.189  Sum_probs=44.7

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeec----------C----CCceeecCCceeeCCCCeEEEEEEe
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT----------A----PKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTT----------a----Pk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      |.++.. -+.|+..   .-..+|+|.|.++.+  |=|++.          .    ..-|.|-|+.-.|+||+...|.|..
T Consensus        24 i~l~~T-RvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~   97 (234)
T PRK15192         24 VVIGGT-RFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVY   97 (234)
T ss_pred             EEeCce-EEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEE
Confidence            566664 6666653   235799999999875  555551          1    1139999999999999999999997

>PRK15188 fimbrial chaperone protein BcfB; Provisional

Probab=82.22  E-value=33  Score=31.28  Aligned_cols=63  Identities=16%  Similarity=0.331  Sum_probs=44.9

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEEEE--EeecCC---CceeecCCceeeCCCCeEEEEEEe
Q 024770           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFK--FQTTAP---KSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        74 lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~-~VAFK--VKTTaP---k~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      -|.+++. .+.|+..   .-..+|+|+|.+++ +..-.  |.....   .-|.|.|+.-.|+||+...|.|..
T Consensus        28 gi~l~~T-RvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~   96 (228)
T PRK15188         28 GIALGAT-RVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMY   96 (228)
T ss_pred             eEEECcE-EEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence            4778886 7777753   23689999999864 33322  111111   249999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	262
2rr3_A	130	Solution Structure Of The Complex Between Human Vap		6e-05
3ikk_A	127	Crystal Structure Analysis Of Msp Domain Length = 1		8e-05
2cri_A	147	Solution Structure Of The Msp Domain Of Mouse Vamp-		8e-05
1z9o_A	128	1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp		2e-04
1z9l_A	128	1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp		3e-04

>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 78  DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
           DP   L F       V + +K++N S   V FK +TTAP+   +RP   I+ PG ++  +
Sbjct: 13  DPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVS 72
Query: 138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLN 197
           V     L   +  P  +KS+ KF + ++    +   +  ++ E K     +  LR VF  
Sbjct: 73  VM----LQPFDYDP-NEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRCVFEM 127
Query: 198 PE 199
           P 
Sbjct: 128 PN 129

>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 78  DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
           +P ++L F       V + +K+ N +  +V FK +TTAP+   +RP   I+  G S+  +
Sbjct: 13  EPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVS 72
Query: 138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 195
           V     L   +  P  +KS+ KF + SM    D   +  ++ E K +   +  LR VF
Sbjct: 73  VM----LQPFDYDP-NEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVF 125

>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 78  DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
           DP + L F       V + +K++N S   V FK +TTAP+   +RP   I+ PG  +  +
Sbjct: 18  DPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVS 77
Query: 138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLN 197
           V     L   +  P  +KS+ KF + ++    ++  +  ++ E K     +  LR VF  
Sbjct: 78  VM----LQPFDYDP-NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEM 132
Query: 198 PE 199
           P 
Sbjct: 133 PN 134

>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 78  DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
           DP + L F       V + +K++N S   V FK +TTAP+   +RP   ++ PG  +  +
Sbjct: 14  DPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVS 73
Query: 138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 195
           V     L   +  P  +KS+ KF + ++    ++  +  ++ E K     +  LR VF
Sbjct: 74  VM----LQPFDYDP-NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVF 126

>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 78  DPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 137
           DP + L F       V + +K++N S   V FK +TTAP+   +RP   ++ PG   I T
Sbjct: 14  DPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGS--IVT 71
Query: 138 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 195
           V   V L   +  P  +KS+ KF + ++    ++     ++ E K     +  LR VF
Sbjct: 72  V--SVXLQPFDYDPN-EKSKHKFXVQTIFAPPNISDXEAVWKEAKPDELXDSKLRCVF 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
2cri_A	147	Vesicle-associated membrane protein-associated pro	6e-35
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	3e-31
1z9l_A	128	Vesicle-associated membrane protein-associated pro	6e-31
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	3e-22
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	2e-11
1row_A	109	SSP-19, MSP-domain protein like family member; bet	4e-08
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	4e-04

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147

 Score =  121 bits (305), Expect = 6e-35
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 5/148 (3%)

Query: 62  SSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFM 121
           SS +  +    + L LDP + L F       V + +K++N S   V FK +TTAP+   +
Sbjct: 2   SSGSSGMAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCV 61

Query: 122 RPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQ 181
           RP   I+ PG            + +  +    +KS+ KF + ++    ++  +  ++ E 
Sbjct: 62  RPNSGIIDPGSI-----VTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEA 116

Query: 182 KDQTAAEQILRVVFLNPERPEPALEKLK 209
           K     +  LR VF  P   +   +   
Sbjct: 117 KPDELMDSKLRCVFEMPNENDKLNDSGP 144

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152

 Score =  112 bits (281), Expect = 3e-31
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 12/151 (7%)

Query: 57  GSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP 116
           GSS  S      + K   L + PA +LYF      + ++ I + N +K+ VAFK +TTAP
Sbjct: 1   GSSGSSGKKPLSVFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAP 60

Query: 117 KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVP- 175
           +   ++P  +   PG S        +++  +    +   ++D+F I++ +++      P 
Sbjct: 61  EKYRVKPSNSSCDPGAS--------IDIIVSPHGGLTVSAQDRFLIMAAEMEQSSGTGPA 112

Query: 176 ---ELFDEQKDQTAAEQILRVVFLNPERPEP 203
              + + E       E  LR   +   +P  
Sbjct: 113 ELSQFWKEVPRNKVMEHRLRCHTVESSKPNS 143

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128

 Score =  110 bits (277), Expect = 6e-31
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 70  PKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILA 129
              + L LDP + L F       V + +K++N S   V FK +TTAP+   +RP   ++ 
Sbjct: 6   KHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVID 65

Query: 130 PGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQ 189
           PG  +  +V       +  +    +KS+ KF + ++    ++  +  ++ E K     + 
Sbjct: 66  PGSIVTVSVM-----LQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDS 120

Query: 190 ILRVVF 195
            LR VF
Sbjct: 121 KLRCVF 126

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126

 Score = 88.0 bits (218), Expect = 3e-22
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 11/133 (8%)

Query: 65  ARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPP 124
           A+S+ P    +   P+ K+ F      +    IKI N     + +  +TT  +   + PP
Sbjct: 1   AQSVPPGD--INTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPP 58

Query: 125 GAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKV--KADVDYVPELFDEQK 182
             +L P E ++  V          +      + D+  I        A   +  E F  Q 
Sbjct: 59  CGVLDPKEKVLMAVSCDTFNAATED-----LNNDRITIEWTNTPDGAAKQFRREWF--QG 111

Query: 183 DQTAAEQILRVVF 195
           D     + L + +
Sbjct: 112 DGMVRRKNLPIEY 124

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116

 Score = 58.7 bits (142), Expect = 2e-11
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 14/110 (12%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           + +DP     +P   G        I + S S +AFK +++  +   +RP    +      
Sbjct: 11  INVDPP-TGNYPATGGNST---HNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 66

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 184
              + +          P      DK  I   +V A+       F     Q
Sbjct: 67  KLDINR---------LPG-PPKEDKIVIQYAEVPAEETDPMAPFKAGAQQ 106

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109

 Score = 49.5 bits (118), Expect = 4e-08
 Identities = 18/110 (16%), Positives = 28/110 (25%), Gaps = 14/110 (12%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L  DP      P        S  K+ N     + FK +++      + P    + P  S 
Sbjct: 3   LTADPPA-CTVPAAGVS---STHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 58

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 184
              + +              K  DK  +      AD       F      
Sbjct: 59  DVVITR---------TAGAPK-EDKLVVHFASAPADATDAQAAFVAVAPA 98

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 122

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 74  RLKLDPANKLYFPYEAGKQVRSA-IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE 132
           R  LD  +KL F     K      + ++N    +  F  +T  P S    P    L  GE
Sbjct: 23  RAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRPFSIE--PAIGTLNVGE 80

Query: 133 SLIATV 138
           S+   V
Sbjct: 81  SMQLEV 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
2cri_A	147	Vesicle-associated membrane protein-associated pro	100.0
1z9l_A	128	Vesicle-associated membrane protein-associated pro	100.0
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	100.0
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	99.97
1row_A	109	SSP-19, MSP-domain protein like family member; bet	99.95
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	99.95
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	98.03
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	97.83
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	97.63
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	97.34
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	95.47
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	94.64
3q48_A	257	Chaperone CUPB2; IG fold, periplasmic chaperone; 2	90.66
2co7_B	221	SAFB chaperone, putative fimbriae assembly chapero	86.06
4djm_A	239	DRAB; chaperone, PILI; 2.52A {Escherichia coli}	83.33
2xg5_A	218	PAPD, chaperone protein PAPD; chaperone, chaperone	82.51

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=100.00  E-value=9.2e-35  Score=242.94  Aligned_cols=126  Identities=28%  Similarity=0.448  Sum_probs=115.0

Q ss_pred             CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 024770           71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK  150 (262)
Q Consensus        71 ~~~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~  150 (262)
                      .+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|+|   ++...  
T Consensus        11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l---~~~~~--   85 (147)
T 2cri_A           11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVML---QPFDY--   85 (147)
T ss_dssp             CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEE---CCCCC--
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEE---CCCcC--
Confidence            4678999998899999999999999999999999999999999999999999999999999999999999   66533  


Q ss_pred             CCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCCCC
Q 024770          151 PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERP  201 (262)
Q Consensus       151 p~~~k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVvf~~p~~p  201 (262)
                      +++++|+|||+||++.++++.+++.++|++..+..++++||||+|+.|..+
T Consensus        86 ~p~~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~p~~~  136 (147)
T 2cri_A           86 DPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNEN  136 (147)
T ss_dssp             CTTCCSCCCEEEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred             CccccCCCEEEEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEEEecCCCC
Confidence            245789999999999999887778999999988899999999999887543

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A

Probab=100.00  E-value=6.1e-34  Score=232.10  Aligned_cols=121  Identities=27%  Similarity=0.457  Sum_probs=111.4

Q ss_pred             CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 024770           71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK  150 (262)
Q Consensus        71 ~~~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~  150 (262)
                      .+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|++   ++.... 
T Consensus         7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~---~~~~~~-   82 (128)
T 1z9l_A            7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVML---QPFDYD-   82 (128)
T ss_dssp             CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEE---CCCCCC-
T ss_pred             CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEE---CcCcCC-
Confidence            4678999998899999999999999999999999999999999999999999999999999999999999   665332 


Q ss_pred             CCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEe
Q 024770          151 PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL  196 (262)
Q Consensus       151 p~~~k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVvf~  196 (262)
                       ++++|+|||+||++.++++.+++.++|++..+..++++||||+|.
T Consensus        83 -p~~~~~dkF~V~s~~~~~~~~~~~~~w~~~~~~~i~e~kLrv~f~  127 (128)
T 1z9l_A           83 -PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFE  127 (128)
T ss_dssp             -TTCCCCCEEEEEEEECCTTCSCHHHHHHSCCGGGCEEEEEEEEEE
T ss_pred             -cccccCCEEEEEEEECCCCcchHHHHhhcCCCCceEEEEEEEEEe
Confidence             357899999999999998877789999999888999999999995

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2

Probab=100.00  E-value=3.6e-34  Score=241.23  Aligned_cols=128  Identities=24%  Similarity=0.363  Sum_probs=113.6

Q ss_pred             CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 024770           71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK  150 (262)
Q Consensus        71 ~~~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~  150 (262)
                      ++++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|||||+.|+|+||++++|.|+|   ++...  
T Consensus        15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~l---q~~~~--   89 (152)
T 1wic_A           15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGGLT--   89 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSSSC--
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEe---cCccc--
Confidence            5678999998899999999999999999999999999999999999999999999999999999999999   55432  


Q ss_pred             CCCCCCCCeEEEEEEEeC--CCC--CchhhhhhccCCCcceeEEEEEEEeCC-CCCChHHH
Q 024770          151 PMYQKSRDKFKIISMKVK--ADV--DYVPELFDEQKDQTAAEQILRVVFLNP-ERPEPALE  206 (262)
Q Consensus       151 p~~~k~kDKFlVqS~~v~--~~~--d~~~elfk~~~~~~i~e~kLrVvf~~p-~~psp~~e  206 (262)
                         .+|+|||+||++.++  ++.  +++.++|++..+..++++||||+|+.+ +++|++.+
T Consensus        90 ---~~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~  147 (152)
T 1wic_A           90 ---VSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLS  147 (152)
T ss_dssp             ---CCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCC
T ss_pred             ---CCCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEEECCCCCCCCcccc
Confidence               378999999999998  443  457899999988899999999999875 45565543

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A

Probab=99.97  E-value=1.1e-29  Score=207.68  Aligned_cols=119  Identities=16%  Similarity=0.222  Sum_probs=101.9

Q ss_pred             CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 024770           71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK  150 (262)
Q Consensus        71 ~~~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~  150 (262)
                      ....|.++|.++|.|++++++++++.|+|+|+|+.+||||||||+|++|||||++|+|+||+++.|.|+|   ++....+
T Consensus         5 ~~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~---q~~~~~~   81 (126)
T 1msp_A            5 PPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSC---DTFNAAT   81 (126)
T ss_dssp             CCCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEE---CCCCGGG
T ss_pred             CCCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEe---cCCCCCC
Confidence            3457999999999999999999999999999999999999999999999999999999999999999999   6655332


Q ss_pred             CCCCCCCCeEEEEEEEeCCCC--CchhhhhhccCCCcceeEEEEEEEe
Q 024770          151 PMYQKSRDKFKIISMKVKADV--DYVPELFDEQKDQTAAEQILRVVFL  196 (262)
Q Consensus       151 p~~~k~kDKFlVqS~~v~~~~--d~~~elfk~~~~~~i~e~kLrVvf~  196 (262)
                       . ...+|||+||++.++++.  |+ .+.|.... ..+..++|+|.|.
T Consensus        82 -~-~~~kDKf~Vq~~~~p~~~~~~~-~~~wf~~d-~~~~~k~L~V~Yn  125 (126)
T 1msp_A           82 -E-DLNNDRITIEWTNTPDGAAKQF-RREWFQGD-GMVRRKNLPIEYN  125 (126)
T ss_dssp             -S-CCSSCEEEEEEEECCTTCCSSC-CTHHHHSS-SCCEEEEEEEEEE
T ss_pred             -C-ccCCCEEEEEEEECCCCcchhh-hHHhhcCC-CceEEEEEEEEec
Confidence             2 345999999999999876  45 45555443 3578999999995

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.95  E-value=6.3e-28  Score=193.57  Aligned_cols=104  Identities=16%  Similarity=0.190  Sum_probs=91.5

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ  154 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~p~~~  154 (262)
                      |.|+|. +|.|.++.+   .+.|+|+|+++.+||||||||+|++|||||+.|+|+||++++|.|++   ++.       .
T Consensus         3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~---q~~-------~   68 (109)
T 1row_A            3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------A   68 (109)
T ss_dssp             CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------C
T ss_pred             EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEe---CCC-------C
Confidence            789998 699998843   69999999999999999999999999999999999999999999999   553       2


Q ss_pred             CCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEE
Q 024770          155 KSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV  194 (262)
Q Consensus       155 k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVv  194 (262)
                      .++|||+||++.++++..++.++|++....  .+.+|++.
T Consensus        69 ~~~dKflvq~~~~~~~~~d~~~~fk~~~~~--g~~~i~l~  106 (109)
T 1row_A           69 PKEDKLVVHFASAPADATDAQAAFVAVAPA--GTVTIPMS  106 (109)
T ss_dssp             CEEEEEEEEEEECCTTCSCHHHHHTTCCCC--EEEEEEEE
T ss_pred             CCCCEEEEEEEECCCCCCCHHHHhhcCCCC--ceEEEEEE
Confidence            379999999999988877789999987653  56677664

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.95  E-value=4.8e-27  Score=190.75  Aligned_cols=105  Identities=22%  Similarity=0.318  Sum_probs=93.1

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCC
Q 024770           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMY  153 (262)
Q Consensus        74 lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~p~~  153 (262)
                      ++.++|. +|.|+++.+   ++.|+|+|+++.+||||||||+|++|||||+.|+|+||++++|.|++   ++.       
T Consensus        10 ~~~~~p~-~l~F~~~gg---~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~---q~~-------   75 (116)
T 1m1s_A           10 MINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG-------   75 (116)
T ss_dssp             SEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC-------
T ss_pred             eeecCCC-eEEEecCCC---EEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEe---CCC-------
Confidence            5899997 999998854   89999999999999999999999999999999999999999999999   553       


Q ss_pred             CCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEE
Q 024770          154 QKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV  194 (262)
Q Consensus       154 ~k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVv  194 (262)
                      ..++|||+||++.++++..++.++|++..+  ..+.+|++.
T Consensus        76 ~~k~DKflVq~~~~~~d~~d~~~~fk~~~~--~g~~~i~l~  114 (116)
T 1m1s_A           76 PPKEDKIVIQYAEVPAEETDPMAPFKAGAQ--QGEIIVKLI  114 (116)
T ss_dssp             CSCEEEEEEEEEEECTTCCCTTHHHHTTCC--CEEEEEEEE
T ss_pred             CCCCCEEEEEEEECCCCCCCHHHHHhcCCC--CceEEEEEE
Confidence            136999999999999877667999999765  477788764

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.03  E-value=2.8e-05  Score=61.58  Aligned_cols=62  Identities=23%  Similarity=0.339  Sum_probs=53.8

Q ss_pred             EEecCCCceEeecC-CCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEe
Q 024770           75 LKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        75 L~IdP~~~L~F~~e-~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      |.+ | +.|.|..- .+......|.|+|.++.++.|++++.  .-|.|.|..|.|+||+++.|.|+.
T Consensus        26 l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F   88 (122)
T 2ys4_A           26 LDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEF   88 (122)
T ss_dssp             CCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEE
T ss_pred             ECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEE
Confidence            444 5 48888665 36678899999999999999999985  469999999999999999999998

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=97.83  E-value=9.3e-05  Score=60.72  Aligned_cols=69  Identities=17%  Similarity=0.224  Sum_probs=57.7

Q ss_pred             CcEEecCCCceEeecC-CCCeEEEEEEEEcCCCCeEEEEEeec------CCCceeecCCceeeCCCCeEEEEEEeec
Q 024770           73 RRLKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFKFV  142 (262)
Q Consensus        73 ~lL~IdP~~~L~F~~e-~~k~~~s~LtL~N~S~~~VAFKVKTT------aPk~Y~VRPn~GiI~Pgesv~I~Vtl~v  142 (262)
                      .-+.|++. .|.|--- ++...+..|+|+|++.-+..|++.-.      .+.-+.|.|..|.|.||+++.|.|++++
T Consensus        25 P~i~v~~~-~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v  100 (140)
T 3qbt_B           25 PSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV  100 (140)
T ss_dssp             CCEEESCC-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred             CceEeeee-eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence            45778886 9999743 57778999999999999999999753      3345889999999999999999999854

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.63  E-value=0.00019  Score=55.09  Aligned_cols=67  Identities=10%  Similarity=0.128  Sum_probs=56.4

Q ss_pred             CcEEecCCCceEeecC-CCCeEEEEEEEEcCCCCeEEEEEeecCC---CceeecCCceeeCCCCeEEEEEEe
Q 024770           73 RRLKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTAP---KSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        73 ~lL~IdP~~~L~F~~e-~~k~~~s~LtL~N~S~~~VAFKVKTTaP---k~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      ..+.+++. .|.|-.- .+...+..++|+|+++.++.|++.....   ..|.+.|..|.|+||++..|.|++
T Consensus         8 P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f   78 (112)
T 2e6j_A            8 PKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISF   78 (112)
T ss_dssp             CSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEE
T ss_pred             CEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEE
Confidence            45888886 7888654 4677889999999999999999964221   459999999999999999999998

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=97.34  E-value=0.00075  Score=63.16  Aligned_cols=70  Identities=17%  Similarity=0.237  Sum_probs=57.4

Q ss_pred             CCcEEecCCCceEeec-CCCCeEEEEEEEEcCCCCeEEEEEeecCCC-c-----eeecCCceeeCCCCeEEEEEEeec
Q 024770           72 RRRLKLDPANKLYFPY-EAGKQVRSAIKIKNTSKSHVAFKFQTTAPK-S-----CFMRPPGAILAPGESLIATVFKFV  142 (262)
Q Consensus        72 ~~lL~IdP~~~L~F~~-e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk-~-----Y~VRPn~GiI~Pgesv~I~Vtl~v  142 (262)
                      ..-+.|++. .|.|-- .++...+..|+|+|++.-++.|++.....+ .     +.|.|..|+|.||+++.|.|++++
T Consensus        27 ~P~v~v~~~-~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v  103 (366)
T 3qis_A           27 LPSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV  103 (366)
T ss_dssp             -CCEEESCS-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred             CCeEEEecC-eEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence            345888886 999953 367789999999999999999999764222 2     569999999999999999999864

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=95.47  E-value=0.051  Score=46.84  Aligned_cols=64  Identities=17%  Similarity=0.199  Sum_probs=55.4

Q ss_pred             EEecCCCceEeecC-CCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEe
Q 024770           75 LKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        75 L~IdP~~~L~F~~e-~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      |+++|. .+.|.-- .|......++++|+++.++-++.... |..+..++..+.|+||++..|.|++
T Consensus         3 i~~~~~-~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~   67 (220)
T 2qsv_A            3 LQVSNA-RLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSL   67 (220)
T ss_dssp             EEESCS-EEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEE
T ss_pred             eEEecC-eeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEE
Confidence            889996 9999764 35566779999999999999997644 8888889999999999999999998

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=94.64  E-value=0.14  Score=44.16  Aligned_cols=66  Identities=18%  Similarity=0.253  Sum_probs=56.1

Q ss_pred             CCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEE-EEeecCCCceeecCCceeeCCCCeEEEEEEe
Q 024770           72 RRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAF-KFQTTAPKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        72 ~~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAF-KVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      ...|.++ . .+.|-.-.+......++|+|+++.++.+ +|+|++ +...+.++.+.|.||++..|.|++
T Consensus       117 ~~~i~~~-~-~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~  183 (220)
T 2qsv_A          117 TGVMELS-T-YLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAV  183 (220)
T ss_dssp             CCCEECC-C-EEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEE
T ss_pred             CCEEEEE-e-EEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEE
Confidence            4458888 5 8888743477888999999999998888 888775 688888999999999999999998

>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}

Probab=90.66  E-value=3.8  Score=36.45  Aligned_cols=108  Identities=16%  Similarity=0.202  Sum_probs=65.4

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecC------C----CceeecCCceeeCCCCeEEEEEEeeccC
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA------P----KSCFMRPPGAILAPGESLIATVFKFVEL  144 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTa------P----k~Y~VRPn~GiI~Pgesv~I~Vtl~v~q  144 (262)
                      |.|+|. .+.|+....   ..+|+|+|.++.++.--+-..+      |    .-|.|-|+.-.|+||+...|.|.+   .
T Consensus        30 v~i~~T-RvIy~~~~k---~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~---~  102 (257)
T 3q48_A           30 LIAQGT-RVVFPASER---EVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAY---L  102 (257)
T ss_dssp             -CCSCS-EEEEETTCS---EEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEE---C
T ss_pred             EEEcce-EEEEeCCCc---EEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEE---C
Confidence            677776 777775432   4899999999887665543221      1    139999999999999999999986   1


Q ss_pred             CCCCCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCC
Q 024770          145 PENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP  198 (262)
Q Consensus       145 p~~~e~p~~~k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVvf~~p  198 (262)
                      ..  ..|.|...  -|-+....+++..+.     ....=......+|++-|-+.
T Consensus       103 ~~--~LP~DrES--lf~lnv~eIPp~~~~-----~~n~Lqiair~rIKLFyRP~  147 (257)
T 3q48_A          103 KA--PLPTDRES--LFWLNILEVPPRDED-----ENNALQFSFRSRFKLFFRPS  147 (257)
T ss_dssp             CC--CCCSSSCE--EEEEEEEEECCC--------------CCEEEEEEEEEECT
T ss_pred             CC--CCCCCcee--EEEEEeeecCCCCCC-----CCceEEEEEEEEEEEEEecc
Confidence            11  12334433  455555555443211     11112345678888887654

>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B

Probab=86.06  E-value=6.1  Score=34.22  Aligned_cols=62  Identities=13%  Similarity=0.270  Sum_probs=46.8

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecC-----CCceeecCCceeeCCCCeEEEEEEe
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA-----PKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTa-----Pk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      |.|++. .+.|+....   ..+|+|.|.++.++.--+-..+     ..-|.|-|+.-.|+||+...|.|.+
T Consensus        14 v~i~~T-RvIy~~~~k---~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~   80 (221)
T 2co7_B           14 VKLGAT-RVIYHAGTA---GATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR   80 (221)
T ss_dssp             CEESCS-EEEEETTSS---CEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEE
T ss_pred             EEEcce-EEEEcCCCC---EEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEE
Confidence            567776 777775433   4799999999887655543211     1249999999999999999999987

>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}

Probab=83.33  E-value=7.8  Score=34.09  Aligned_cols=62  Identities=13%  Similarity=0.222  Sum_probs=45.7

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeec-----CCCceeecCCceeeCCCCeEEEEEEe
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTT-----aPk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      |.|++. -+.|+....   ..+|+|+|.++.++.--+-..     ...-|.|-|+.-.|+||+...|.|.+
T Consensus        24 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~   90 (239)
T 4djm_A           24 LHLGAT-RVVYNPASS---GETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVR   90 (239)
T ss_dssp             CEESCS-EEEECTTSS---CEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEE
T ss_pred             EEEcce-EEEEeCCCC---EEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence            667776 677765433   479999999887755433211     12249999999999999999999986

>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A

Probab=82.51  E-value=12  Score=32.24  Aligned_cols=62  Identities=18%  Similarity=0.232  Sum_probs=47.0

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEEEEEeecC-------CCceeecCCceeeCCCCeEEEEEEe
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKFQTTA-------PKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~-~VAFKVKTTa-------Pk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      |.|++. -+.|+....   ..+|+|+|.++. ++.--+-..+       ..-|.|-|+.-.|+||+...|.|.+
T Consensus         2 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~   71 (218)
T 2xg5_A            2 VSLDRT-RAVFDGSEK---SMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLST   71 (218)
T ss_dssp             EEESCS-EEEEETTSS---EEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEE
T ss_pred             cEeCce-EEEEeCCCC---EEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEe
Confidence            567775 777776543   579999999887 7665543321       2349999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1wica_	152	b.1.11.2 (A:) MSP domain containing protein 2, Mos	1e-27
d1grwa_	124	b.1.11.2 (A:) Major sperm protein, MSP {Nematode (	6e-20
d1m1sa_	109	b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan	3e-19
d1rowa_	107	b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele	2e-17

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (253), Expect = 1e-27
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 13/155 (8%)

Query: 57  GSSSVSSVARSLLPKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAP 116
           GSS  S      + K   L + PA +LYF      + ++ I + N +K+ VAFK +TTAP
Sbjct: 1   GSSGSSGKKPLSVFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAP 60

Query: 117 KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVP- 175
           +   ++P  +   PG S+   V     L           ++D+F I++ +++      P 
Sbjct: 61  EKYRVKPSNSSCDPGASIDIIVSPHGGLT--------VSAQDRFLIMAAEMEQSSGTGPA 112

Query: 176 ---ELFDEQKDQTAAEQILRVVFLNPERP-EPALE 206
              + + E       E  LR   +   +P    L 
Sbjct: 113 ELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLS 147

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 80.7 bits (199), Expect = 6e-20
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           ++  P  K+ F      +    IK+ N+S   + +  +TT  K   + PP  +L P E++
Sbjct: 7   IQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAV 66

Query: 135 IATVF--KFVELPENNEKPMYQKSRDKFKIISMKV--KADVDYVPELFDEQKDQTAAEQI 190
           +  V    F    E+        + D+  +        A   +  E F  Q D     + 
Sbjct: 67  LLAVSCDAFAFGQED-------TNNDRITVEWTNTPDGAAKQFRREWF--QGDGMVRRKN 117

Query: 191 LRVVFL 196
           L + + 
Sbjct: 118 LPIEYN 123

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 78.3 bits (193), Expect = 3e-19
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 14/110 (12%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           + +DP     +P   G    S   I + S S +AFK +++  +   +RP    +      
Sbjct: 4   INVDP-PTGNYPATGGN---STHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 59

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 184
              + +                 DK  I   +V A+       F     Q
Sbjct: 60  KLDINRLPG----------PPKEDKIVIQYAEVPAEETDPMAPFKAGAQQ 99

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.3 bits (180), Expect = 2e-17
 Identities = 20/116 (17%), Positives = 31/116 (26%), Gaps = 17/116 (14%)

Query: 75  LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134
           L  DP      P      V S  K+ N     + FK +++      + P    + P  S 
Sbjct: 1   LTADPPA-CTVP---AAGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 56

Query: 135 IATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQI 190
              + +              K  DK  +      AD       F        A  +
Sbjct: 57  DVVITR---------TAGAPK-EDKLVVHFASAPADATDAQAAF---VAVAPAGTV 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1wica_	152	MSP domain containing protein 2, Mospd2 {Mouse (Mu	99.97
d1grwa_	124	Major sperm protein, MSP {Nematode (Caenorhabditis	99.96
d1m1sa_	109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	99.92
d1rowa_	107	SSP-19 {Nematode (Caenorhabditis elegans) [TaxId:	99.91
d2co7b1	128	Periplasmic chaperone SafB {Salmonella typhimurium	94.99
d1p5va1	141	Chaperone protein Caf1m {Yersinia pestis [TaxId: 6	93.98
d2j2za1	124	Pilus chaperone PapD, N-domain {Escherichia coli [	90.62
d3bwuc1	121	Periplasmic chaperone FimC {Escherichia coli [TaxI	85.52
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	80.86

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.2e-31  Score=220.67  Aligned_cols=127  Identities=24%  Similarity=0.376  Sum_probs=111.3

Q ss_pred             CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 024770           71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK  150 (262)
Q Consensus        71 ~~~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~  150 (262)
                      .+.+|.|+|.++|.|.++.++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|++   ++.    
T Consensus        15 ~~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~---~~~----   87 (152)
T d1wica_          15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGG----   87 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSS----
T ss_pred             CCCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEE---CCC----
Confidence            3668999998889999999999999999999999999999999999999999999999999999999998   332    


Q ss_pred             CCCCCCCCeEEEEEEEeCCCC----CchhhhhhccCCCcceeEEEEEEEeCCCC-CChHH
Q 024770          151 PMYQKSRDKFKIISMKVKADV----DYVPELFDEQKDQTAAEQILRVVFLNPER-PEPAL  205 (262)
Q Consensus       151 p~~~k~kDKFlVqS~~v~~~~----d~~~elfk~~~~~~i~e~kLrVvf~~p~~-psp~~  205 (262)
                       ..++|+|||+|+++.+++..    +++.++|+...+..++++||||+|+.+.. ++++.
T Consensus        88 -~~~~~kdKFli~~~~v~~~~~~~~~d~~~~wk~~~~~~i~~~kLkv~~~~~~~p~s~~~  146 (152)
T d1wica_          88 -LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLML  146 (152)
T ss_dssp             -SCCCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCC
T ss_pred             -CcccCCCcEEEEEEEeCCCCCCCccCHHHHhhcCCcCcEEEEEEEEEEeCCCCCCCccc
Confidence             34778999999999997554    24689999988889999999999998654 44443

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=8.8e-29  Score=200.36  Aligned_cols=118  Identities=15%  Similarity=0.183  Sum_probs=103.3

Q ss_pred             cEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCC
Q 024770           74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMY  153 (262)
Q Consensus        74 lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~p~~  153 (262)
                      .|.++|.++|.|++++++.+++.|+|+|+++.+||||||||+|++|+|||++|+|+||+++.|.|+|   ++...  .++
T Consensus         6 ~l~i~P~~~L~F~~p~~~~~~~~l~l~N~s~~~vafKvktt~p~~y~v~P~~G~i~p~~~~~i~V~~---~~~~~--~~~   80 (124)
T d1grwa_           6 DIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSC---DAFAF--GQE   80 (124)
T ss_dssp             CEEEESSSCEEEESCCSSCEEEEEEEEECSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CCCCG--GGS
T ss_pred             ceEECCCCeEEEecCCCcEEEEEEEEECCCCCeEEEEEEeCCCceEEEECCCCEECCCCEEEEEEEE---ecCCC--CCc
Confidence            5999999999999999999999999999999999999999999999999999999999999999999   55432  345


Q ss_pred             CCCCCeEEEEEEEeCCCC-CchhhhhhccCCCcceeEEEEEEEeC
Q 024770          154 QKSRDKFKIISMKVKADV-DYVPELFDEQKDQTAAEQILRVVFLN  197 (262)
Q Consensus       154 ~k~kDKFlVqS~~v~~~~-d~~~elfk~~~~~~i~e~kLrVvf~~  197 (262)
                      .+++|||+|+++.++++. +.....|+... ..+.+++|+|.|.+
T Consensus        81 ~~~~dkF~v~~~~~p~~~~~~~~~~w~~~~-~~~~~~~l~V~Y~p  124 (124)
T d1grwa_          81 DTNNDRITVEWTNTPDGAAKQFRREWFQGD-GMVRRKNLPIEYNP  124 (124)
T ss_dssp             CCTTCEEEEEEEECCSSCCSSCCGGGGTSS-SCCEEEEEEEEEEC
T ss_pred             ccCCceEEEEEEECCCccHHHHHHHHhccC-CceEEEEEEEEeCC
Confidence            789999999999997553 44567777654 46789999999974

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=6.4e-25  Score=173.99  Aligned_cols=105  Identities=23%  Similarity=0.314  Sum_probs=90.9

Q ss_pred             CcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCC
Q 024770           73 RRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM  152 (262)
Q Consensus        73 ~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~p~  152 (262)
                      .+|.|+|. +|.|++++|   .+.++|+|.|+.+||||||||+|++|+|+|++|+|+||+++.|.|++   ++..     
T Consensus         2 ~~L~i~P~-~l~F~~~~g---~~~~~l~N~s~~~vafKiktt~~~~y~V~P~~G~I~P~~~~~i~I~~---~~~~-----   69 (109)
T d1m1sa_           2 SMINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPGP-----   69 (109)
T ss_dssp             CSEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSCC-----
T ss_pred             ceEEEeCC-EEEeecCCC---cEEEEEECCCCCcEEEEEEcCCCCeEEEeCCeeEECCCCeEEEEEEe---CCCC-----
Confidence            37999997 999998765   57899999999999999999999999999999999999999999998   4432     


Q ss_pred             CCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEE
Q 024770          153 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRV  193 (262)
Q Consensus       153 ~~k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrV  193 (262)
                        ..+|||+|+++.++++.+++.++|+..+..  .+..+++
T Consensus        70 --~~~DKf~I~~~~~~~~~~d~~~~fk~~~~~--~~~~ikl  106 (109)
T d1m1sa_          70 --PKEDKIVIQYAEVPAEETDPMAPFKAGAQQ--GEIIVKL  106 (109)
T ss_dssp             --SCEEEEEEEEEEECTTCCCTTHHHHTTCCC--EEEEEEE
T ss_pred             --CCCCEEEEEEEECCCCCcCHHHHHhcCCCC--CcEEEEE
Confidence              258999999999998887789999987665  3444543

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=1.4e-24  Score=171.78  Aligned_cols=104  Identities=17%  Similarity=0.211  Sum_probs=89.6

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ  154 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~p~~~  154 (262)
                      |.++|. +|.|+...   ..+.|+|+|.|+.+||||||||+|.+|+|+|+.|+|+||+++.|.|++   +|.       .
T Consensus         1 l~~dP~-~~~f~~~~---g~~~~~l~N~s~~~vafKvKtt~~~~y~V~P~~G~i~P~~~~~I~I~~---~~~-------~   66 (107)
T d1rowa_           1 LTADPP-ACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------A   66 (107)
T ss_dssp             CEEESS-SEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------C
T ss_pred             CeeCCC-cceeeCCC---CeEEEEEEcCCCCeEEEEEEcCCCCeEEEECCEEEECCCCEEEEEEEe---CCC-------C
Confidence            679998 89998764   468999999999999999999999999999999999999999999998   553       2


Q ss_pred             CCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEE
Q 024770          155 KSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV  194 (262)
Q Consensus       155 k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVv  194 (262)
                      ..+|||+||++.++++.+++.++|+.....  .+..|++.
T Consensus        67 ~~~DKf~I~~~~~~~~~~d~~~~fk~~~~~--~~~~ikl~  104 (107)
T d1rowa_          67 PKEDKLVVHFASAPADATDAQAAFVAVAPA--GTVTIPMS  104 (107)
T ss_dssp             CEEEEEEEEEEECCTTCSCHHHHHTTCCCC--EEEEEEEE
T ss_pred             CCCCEEEEEEEECCCCCcCHHHHhhcCCCC--CcEEEEEE
Confidence            358999999999999988889999986554  34455544

>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone SafB
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.99  E-value=0.19  Score=38.20  Aligned_cols=62  Identities=11%  Similarity=0.261  Sum_probs=47.9

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeec-----CCCceeecCCceeeCCCCeEEEEEEe
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTT-----aPk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      |.|+.. -+.|....   -...|+|+|.++.++-..+...     ...-|.|-|+.-.|+||+...|.|..
T Consensus         7 v~l~~T-Rvi~~~~~---~~~sv~l~N~~~~p~lvQ~~v~~~~~~~~~~fivtPPl~rl~p~~~q~vRI~~   73 (128)
T d2co7b1           7 VKLGAT-RVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR   73 (128)
T ss_dssp             CEESCS-EEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEE
T ss_pred             EEECCe-EEEEcCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEeCceeEECCCCceEEEEEe
Confidence            567776 77776533   3578999999988776665432     22359999999999999999999986

>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Chaperone protein Caf1m
species: Yersinia pestis [TaxId: 632]

Probab=93.98  E-value=0.69  Score=35.63  Aligned_cols=62  Identities=15%  Similarity=0.259  Sum_probs=48.5

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCC-------ceeecCCceeeCCCCeEEEEEEe
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPK-------SCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk-------~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      |.|+.. -+.|+...   -...|+|+|.++.++...+.....+       -|.|-|+.-.|+||+...|.|..
T Consensus         8 v~l~~T-RvIy~~~~---~~~s~~v~N~~~~p~lvQ~wv~~~~~~~~~~~pfivtPPl~rl~p~~~~~lRI~~   76 (141)
T d1p5va1           8 VTIGES-RIIYPLDA---AGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQ   76 (141)
T ss_dssp             EEESCS-EEEEETTC---SCEEEEEEECSSSCEEEEEEECC---------CEEEESSEEEECTTCEEEEEEEE
T ss_pred             eEeCcc-EEEEcCCC---cEEEEEEEeCCCCCEEEEEEEEcCCCCcCCCCCeEEcCCeEEECCCCceEEEEEe
Confidence            567775 67777532   2568999999999988887654321       29999999999999999999986

>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Pilus chaperone PapD, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.62  E-value=1.8  Score=32.35  Aligned_cols=62  Identities=18%  Similarity=0.229  Sum_probs=43.5

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEEEEEeec--C-----CCceeecCCceeeCCCCeEEEEEEe
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKFQTT--A-----PKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~-~VAFKVKTT--a-----Pk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      +.|+.. -+.|....   -...++|+|.+++ ++--.....  .     ..-|.|.|+.-.|+||+...|.|.+
T Consensus         2 i~l~~T-RvI~~~~~---~~~~i~v~N~~~~~p~LvQswv~~~~~~~~~~~~fivtPPl~rl~p~~~~~vRI~~   71 (124)
T d2j2za1           2 VSLDRT-RAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLST   71 (124)
T ss_dssp             EEESCS-EEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEESSSSEEEECSEEEECTTCEEEEEEEE
T ss_pred             eEeCCc-EEEEeCCC---CEEEEEEEeCCCCccEEEEEEEecCCCCccccCCeEECCCeEEECCCCcceEEEEE
Confidence            456665 67776532   3589999998764 443333222  1     1239999999999999999999997

>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone FimC
species: Escherichia coli [TaxId: 562]

Probab=85.52  E-value=5.4  Score=29.38  Aligned_cols=62  Identities=8%  Similarity=0.203  Sum_probs=43.7

Q ss_pred             EEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEEEEE-----eecCCCceeecCCceeeCCCCeEEEEEEe
Q 024770           75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKF-----QTTAPKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~-~VAFKV-----KTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      |.++.. -+.|....   -...++|.|.+++ ++..-+     ..+....|.|.|+.-.|+||+...|.|.+
T Consensus         2 i~l~~T-RvI~~~~~---~~~~~~i~N~~~~~~~lvq~wv~~~d~~~~~~fivtPPl~rl~p~~~q~vRI~~   69 (121)
T d3bwuc1           2 VALGAT-RVIYPAGQ---KQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILD   69 (121)
T ss_dssp             EEESCS-EEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCCCSSEEEESSEEEEESSEEEEEEEEE
T ss_pred             eeECce-EEEEcCCC---ceEEEEEEECCCCccEEEEEEEEcCCCCcCCCeeECCCcEEeCCCCeeEEEEEe
Confidence            445554 66676433   3589999998754 433222     12334459999999999999999999987

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=80.86  E-value=2.2  Score=31.00  Aligned_cols=54  Identities=24%  Similarity=0.238  Sum_probs=44.9

Q ss_pred             cCCCCeEEEEEEEEcCCCCeEE-EEEeecCCCceeecCCceeeCCCCeEEEEEEe
Q 024770           87 YEAGKQVRSAIKIKNTSKSHVA-FKFQTTAPKSCFMRPPGAILAPGESLIATVFK  140 (262)
Q Consensus        87 ~e~~k~~~s~LtL~N~S~~~VA-FKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl  140 (262)
                      .++|......++|+|.....+. .++--+.|.-..+.|..--|+||++..+.+.+
T Consensus        13 v~pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~~L~pG~s~~~~~~V   67 (103)
T d1w8oa1          13 LEPGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVEPLMPGRQAKGQVTI   67 (103)
T ss_dssp             ECTTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEECCBCTTCEEEEEEEE
T ss_pred             eCCCCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcceeeCCCCcEEEEEEE
Confidence            3457888999999999876543 46666789999999988889999999999987