Citrus Sinensis ID: 024771

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MESLDLQVCCIDDLLDFNINDDECGKPTKRPRNALSSVNRNGCDFDVFEAGDDTDRLFPECAEEELEWLSNFPTVETFVDISSNPNILKQQSPNSVLENSNSSSSTSTNGSTITNGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQMMGIELGVLGVKPVDKG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHEEHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccHHHcccEEEcccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
mesldlqvcciddlldfninddecgkptkrprnalssvnrngcdfdvfeagddtdrlfPECAEEELEwlsnfptvetfvdissnpnilkqqspnsvlensnsssststngstitngnnnsnsIIMNccgnlrvpvrarSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGrkcqhcgaektpqwragpmgpktlcnacgvrfksgrlvpeyrpansptfsselhsnsHRKVVEMRRQKQMMGielgvlgvkpvdkg
Flexible Loop (DISEMBL)
MESLDLQVCCIDDLLdfninddecgkptkrprnalssvnrngCDFDVFEAGDDTDRLFPECAEEELEWLSNFPTVETFVDISSNPNILKQQSPNSVLENSNSSSSTSTNGSTITNGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELlnqeawwgsvhgsvkaAKPVVSKVIIGRKCQHCGAEktpqwragpmgPKTLCNACGVRFKSGRLVPEYRPansptfsselhsnshRKVVEMRRQKQmmgielgvlgvkpvdkg
Low Complexity Region (SEG)
MESLDLQVCCiddlldfninddECGKPTKRPRNALSSVNRNGCDFDVFEAGDDTDRLFPECAEEELEWLSNFPTVETFVDISSNPNILKQQSPNSVLEnsnsssststngstitngnnnsnsiiMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGsvkaakpvvskvIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQMMGIELGVLGVKPVDKG
Disordered region (IsUnstruct)
****DLQVCCIDDLLDFNINDDE***************NRNGCDFDVFEAGDDTDRLFPECAEEELEWLSNFPTVETFVDI****************************************SIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV************************************LGV*********
Disordered Region (DISOPRED)
****DLQVCCIDDLLDFNIND***********************************LFPECAEEELEWLSNFP***********************************************************************************************************HCGAEKTPQWRAGPMGPKTLCNACGVR*******************************************************
Disordered Region (DISEMBL)
MESLDLQVCCIDDLLDFNINDDECGKPTKRPRNALSSVNRNGCDFDVFEAGDDTDRLFPECAEEELEWLSNFPTVETFVDISSNPNILKQ*********************TITNGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQMMGIELGVLGVKPVDKG
Disordered Region (DISPRO)
***LDLQVCCIDDLLDFNI**********************************TDRLFPECAEEELEWLSNFPTV****************************************************************************************************GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSE**********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESLDLQVCCIDDLLDFNINDDECGKPTKRPRNALSSVNRNGCDFDVFEAGDDTDRLFPECAEEELEWLSNFPTVETFVDISSNPNILKQQSPNSVLENSNSSSSTSTNGSTITNGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQMMGIELGVLGVKPVDKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q8LAU9	274	GATA transcription factor	yes	no	0.870	0.832	0.448	5e-44
O82632	308	GATA transcription factor	no	no	0.847	0.720	0.403	5e-33
Q9FH57	339	GATA transcription factor	no	no	0.263	0.203	0.840	8e-31
Q8L4M6	269	GATA transcription factor	no	no	0.484	0.472	0.510	2e-30
P69781	331	GATA transcription factor	no	no	0.637	0.504	0.422	5e-30
O49741	264	GATA transcription factor	no	no	0.270	0.268	0.788	2e-29
Q9SD38	312	GATA transcription factor	no	no	0.263	0.221	0.797	2e-29
O49743	240	GATA transcription factor	no	no	0.267	0.291	0.771	1e-28
Q6DBP8	303	GATA transcription factor	no	no	0.534	0.462	0.420	4e-28
O65515	238	GATA transcription factor	no	no	0.522	0.575	0.392	2e-27

>sp|Q8LAU9|GATA1_ARATH GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2

 Score =  177 bits (450), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/263 (44%), Positives = 160/263 (60%), Gaps = 35/263 (13%)

Query: 11  IDDLLDFNI--NDDECGKPTKRPRNALSSVN--RNGCDFDVFEAGDDTDRLFPECAEEEL 66
           +DDLL+F++   +++  + T+ PRN        R    F +F   D          EE+L
Sbjct: 7   MDDLLNFSVPEEEEDDDEHTQPPRNITRRKTGLRPTDSFGLFNTDD-----LGVVEEEDL 61

Query: 67  EWLSN---FPTVETFVDISSNPNI------------LKQQSPNSVLENSNSSSSTSTNGS 111
           EW+SN   FP +ETFV +  + +             +KQ SP SVLE S+ SS+T+T+ S
Sbjct: 62  EWISNKNAFPVIETFVGVLPSEHFPITSLLEREATEVKQLSPVSVLETSSHSSTTTTSNS 121

Query: 112 TITNGNNNSNSI------IMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKA 165
           +  +  + + +       IM+CC   + P +ARSK R         +  W G+  G ++ 
Sbjct: 122 SGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRRRT--GRRDLRVLWTGNEQGGIQK 179

Query: 166 AKPV---VSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANS 222
            K +    + +I+GRKCQHCGAEKTPQWRAGP GPKTLCNACGVR+KSGRLVPEYRPANS
Sbjct: 180 KKTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANS 239

Query: 223 PTFSSELHSNSHRKVVEMRRQKQ 245
           PTF++ELHSNSHRK+VEMR+Q Q
Sbjct: 240 PTFTAELHSNSHRKIVEMRKQYQ 262

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.
Arabidopsis thaliana (taxid: 3702)

>sp|O82632|GATA9_ARATH GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1

 Score =  141 bits (355), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 136/263 (51%), Gaps = 41/263 (15%)

Query: 10  CIDDLLDFNINDDEC--GKPTKRPRNALSS--VNRNGCDFDVFEAGDD-TDRLFPECAEE 64
            +DDLLDF+ +D E   G  T    + LS+  +  +     +F  G   +D   P     
Sbjct: 19  VVDDLLDFSNDDGEVDDGLNTLPDSSTLSTGTLTDSSNSSSLFTDGTGFSDLYIPNDDIA 78

Query: 65  ELEWLSNFPTVETFVDISSNPNILKQQSPNSVLENSNSSSSTSTNGSTITNGNNNSNSII 124
           ELEWLSNF   E+F     +   L      S L+N  ++ ST T+   I       +  I
Sbjct: 79  ELEWLSNF-VEESFAGEDQDKLHLF-----SGLKNPQTTGSTLTH--LIKPEPELDHQFI 130

Query: 125 MNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSV---------KAAKPVVSKVII 175
                N+ VP +ARSK R+R      +  + W S   S+         K  + V  +   
Sbjct: 131 DIDESNVAVPAKARSK-RSR------SAASTWASRLLSLADSDETNPKKKQRRVKEQDFA 183

Query: 176 G------------RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSP 223
           G            R+C HC  EKTPQWR GPMGPKTLCNACGVR+KSGRLVPEYRPA+SP
Sbjct: 184 GDMDVDCGESGGGRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSP 243

Query: 224 TFSSELHSNSHRKVVEMRRQKQM 246
           TF    HSNSHRKV+E+RRQK+M
Sbjct: 244 TFVMARHSNSHRKVMELRRQKEM 266

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH57|GATA5_ARATH GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1

 Score =  134 bits (336), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 58/69 (84%), Positives = 64/69 (92%)

Query: 177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 236
           RKC HCG +KTPQWRAGPMG KTLCNACGVR+KSGRL+PEYRPA SPTFSSELHSN HRK
Sbjct: 249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRK 308

Query: 237 VVEMRRQKQ 245
           V+EMRR+K+
Sbjct: 309 VIEMRRKKE 317

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4M6|GATA3_ARATH GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 87/139 (62%), Gaps = 12/139 (8%)

Query: 132 RVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSK------VIIGRKCQHCGAE 185
           R+PV+ R+K   R R  L     W         AA   + K      ++  R+C HCG  
Sbjct: 132 RIPVKPRTK---RSRNSLTGSRVWPLVSTNHQHAATEQLRKKKQETVLVFQRRCSHCGTN 188

Query: 186 KTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 245
            TPQWR GP+GPKTLCNACGVRFKSGRL PEYRPA+SPTFS+E+HSN HRKV+E+R+ K+
Sbjct: 189 NTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRKSKE 248

Query: 246 MMGIELGVLGVK--PVDKG 262
            +G E G    K  PV  G
Sbjct: 249 -LGEETGEASTKSDPVKFG 266

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|P69781|GAT12_ARATH GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/225 (42%), Positives = 115/225 (51%), Gaps = 58/225 (25%)

Query: 64  EELEWLSNFPTVETFVDISSNPNILKQQSPNSVLE-NSNSSSSTSTNGSTITNGNNNSNS 122
           +ELEWLSN       VD S +P  + +      LE  S   S       T +  N NS+S
Sbjct: 80  DELEWLSNI------VDESLSPEDVHK------LELISGFKSRPDPKSDTGSPENPNSSS 127

Query: 123 IIMNCCGNLRVPVRARSKLRTRC------RRELLNQEAWWGS------------------ 158
            I     ++ VP +ARSK R+R        R LL +E ++ S                  
Sbjct: 128 PIFTT--DVSVPAKARSK-RSRAAACNWASRGLL-KETFYDSPFTGETILSSQQHLSPPT 183

Query: 159 --------------VHGSVKAAKPVVSKVIIG---RKCQHCGAEKTPQWRAGPMGPKTLC 201
                         V G  +  K V S    G   R+C HC  +KTPQWR GPMGPKTLC
Sbjct: 184 SPPLLMAPLGKKQAVDGGHRRKKDVSSPESGGAEERRCLHCATDKTPQWRTGPMGPKTLC 243

Query: 202 NACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQM 246
           NACGVR+KSGRLVPEYRPA SPTF    HSNSHRKV+E+RRQK+M
Sbjct: 244 NACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKEM 288

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O49741|GATA2_ARATH GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 64/71 (90%)

Query: 177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 236
           R+C HC +EKTPQWR GP+GPKTLCNACGVRFKSGRLVPEYRPA+SPTF    HSNSHRK
Sbjct: 179 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRK 238

Query: 237 VVEMRRQKQMM 247
           V+E+RRQK++M
Sbjct: 239 VMELRRQKEVM 249

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SD38|GATA6_ARATH GATA transcription factor 6 OS=Arabidopsis thaliana GN=GATA6 PE=2 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 63/69 (91%)

Query: 177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 236
           R+C HCG +KTPQWRAGP+G KTLCNACGVR+KSGRL+PEYRPA SPTFSSELHSN H K
Sbjct: 221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHSK 280

Query: 237 VVEMRRQKQ 245
           V+EMRR+K+
Sbjct: 281 VIEMRRKKE 289

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O49743|GATA4_ARATH GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 62/70 (88%)

Query: 176 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHR 235
            R+C HC +EKTPQWR GP+GPKTLCNACGVR+KSGRLVPEYRPA+SPTF    HSNSHR
Sbjct: 157 ARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHR 216

Query: 236 KVVEMRRQKQ 245
           KV+E+RRQK+
Sbjct: 217 KVMELRRQKE 226

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1

 Score =  125 bits (313), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 95/188 (50%), Gaps = 48/188 (25%)

Query: 87  ILKQQSPNSVLENSNSSSSTSTNGSTITNGNNNSNSIIMNCCGNLRVPV---RARSKLRT 143
           + +  SP SVLENS  S ST  NGS                   L  PV   R++ K  T
Sbjct: 116 LFQSLSPVSVLENSYGSLSTHNNGSQ-----------------RLAFPVKGMRSKRKRPT 158

Query: 144 RCRRELL----------------NQEAWWGS-VHGSVKAAKPVVSKVI-----------I 175
             R   L                  E ++ S  H   K    + ++ +           I
Sbjct: 159 TLRLSYLFPSEPRKPEKSTPGKPESECYFSSEQHAKKKRKIHLTTRTVSSTLEASNSDGI 218

Query: 176 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHR 235
            RKC HC   KTPQWR GP GPKTLCNACGVRF+SGRLVPEYRPA+SPTF   +HSNSHR
Sbjct: 219 VRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHR 278

Query: 236 KVVEMRRQ 243
           K++EMRR+
Sbjct: 279 KIIEMRRK 286

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O65515|GATA7_ARATH GATA transcription factor 7 OS=Arabidopsis thaliana GN=GATA7 PE=2 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/204 (39%), Positives = 103/204 (50%), Gaps = 67/204 (32%)

Query: 64  EELEWLSNFPTVETFVDISSNPNILKQQSPNSVLENSNSSSSTSTNGSTITNGNNNSNSI 123
           E+LEWLSNF                        +E+S S S  S++       N  ++  
Sbjct: 72  EDLEWLSNF------------------------VEDSFSESYISSDFPV----NPVASVE 103

Query: 124 IMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRK----- 178
           +   C    VPV+ RSK      R   N   W      S+++  P++S  +  RK     
Sbjct: 104 VRRQC----VPVKPRSK------RRRTNGRIW------SMESPSPLLSTAVARRKKRGRQ 147

Query: 179 ------------------CQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPA 220
                             C HCG +KTPQWR GP+G KTLCNACGVRFKSGRL+PEYRPA
Sbjct: 148 KVDASYGGVVQQQQLRRCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPA 207

Query: 221 NSPTFSSELHSNSHRKVVEMRRQK 244
            SPTF++E+HSNSHRKV+E+R  K
Sbjct: 208 CSPTFTNEIHSNSHRKVLELRLMK 231

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
224057660	258	predicted protein [Populus trichocarpa]	0.927	0.941	0.563	5e-62
255554246	205	GATA transcription factor, putative [Ric	0.740	0.946	0.642	3e-56
449465254	287	PREDICTED: GATA transcription factor 1-l	0.694	0.634	0.544	7e-50
225433393	251	PREDICTED: GATA transcription factor 1-l	0.870	0.908	0.513	3e-49
37572445	289	AG-motif binding protein-2 [Nicotiana ta	0.694	0.629	0.535	1e-45
15229571	274	GATA transcription factor 1 [Arabidopsis	0.870	0.832	0.448	3e-42
21593190	268	GATA transcription factor 1 (AtGATA-1) [	0.870	0.850	0.444	7e-42
297835478	270	hypothetical protein ARALYDRAFT_479930 [	0.870	0.844	0.467	4e-41
357481109	331	GATA transcription factor [Medicago trun	0.835	0.661	0.447	3e-40
110743205	134	GATA transcription factor 1 [Arabidopsis	0.454	0.888	0.620	3e-35

>gi|224057660|ref|XP_002299291.1| predicted protein [Populus trichocarpa] gi|222846549|gb|EEE84096.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 156/277 (56%), Positives = 185/277 (66%), Gaps = 34/277 (12%)

Query: 1   MESLDLQVC-CIDDLLDF------NINDDECGKPTKRPRNALSSVNRNG---CDFDVFEA 50
           MESLD   C  +DDLLDF        + +E  + +K+ R AL S+N N      F+V E 
Sbjct: 1   MESLDTAACFMVDDLLDFCSDIGEEEDGEEHQRNSKKSRRALPSLNPNALHPASFNVLEH 60

Query: 51  GDDTDRLFPECAEEELEWLSN---FPTVET-FVDISSNP-NILKQQSPNSVLENSNSSSS 105
                 L PE AEEELEWLSN   FPTVET F  +S  P +I K  SP SVLENS +SS+
Sbjct: 61  S-----LLPEFAEEELEWLSNKDAFPTVETCFGSLSGEPGSIPKHHSPVSVLENSTTSST 115

Query: 106 TSTNGSTITNGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKA 165
           +++  S+       +++IIM+ C  LRVPV+ARSK   R  RE+  QE WW   +   + 
Sbjct: 116 SNSGNSS-------NSNIIMSYC-RLRVPVKARSKRHHRHPREIQEQECWWSQENFITR- 166

Query: 166 AKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTF 225
            KP VS   +GRKCQHCG EKTPQWRAGP GPKTLCNACGVR+KSGRLVPEYRPANSPTF
Sbjct: 167 -KPAVSVAKLGRKCQHCGVEKTPQWRAGPDGPKTLCNACGVRYKSGRLVPEYRPANSPTF 225

Query: 226 SSELHSNSHRKVVEMRRQKQMMGIELGVLGVKPVDKG 262
           SS+LHSNSHRKVVEMRRQKQM G+    L  KP+DKG
Sbjct: 226 SSKLHSNSHRKVVEMRRQKQMTGL----LVAKPMDKG 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554246|ref|XP_002518163.1| GATA transcription factor, putative [Ricinus communis] gi|223542759|gb|EEF44296.1| GATA transcription factor, putative [Ricinus communis]

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 135/210 (64%), Positives = 157/210 (74%), Gaps = 16/210 (7%)

Query: 58  FPECAEEELEWLSN---FPTVETFVDI-SSNPNIL-KQQSPNSVLENSNSSSSTSTNGST 112
           + E AEEELEWLSN   FP+VETFVDI + NP  L K +SP SVLENS +SS++++  S 
Sbjct: 7   YREFAEEELEWLSNKDAFPSVETFVDILTENPGSLQKHRSPVSVLENSTTSSTSNSGHS- 65

Query: 113 ITNGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSK 172
              G N+S  +IMN C +L VPV+ARSK   R RR+L  Q+ WW S     K      S 
Sbjct: 66  ---GTNDS--VIMNYCRSLHVPVKARSKPHRRRRRDLGGQQCWW-SQENLKKVKVVKSSS 119

Query: 173 VIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSN 232
             IGRKCQHCGAEKTPQWRAGP+GPKTLCNACGVR+KSGRLVPEYRPA+SPTFSS LHSN
Sbjct: 120 STIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFSSVLHSN 179

Query: 233 SHRKVVEMRRQKQMMGIELGVLGVKPVDKG 262
           SHRKV+EMRRQKQMMGI    + VKP++KG
Sbjct: 180 SHRKVLEMRRQKQMMGI----MVVKPMEKG 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465254|ref|XP_004150343.1| PREDICTED: GATA transcription factor 1-like [Cucumis sativus] gi|449514819|ref|XP_004164489.1| PREDICTED: GATA transcription factor 1-like [Cucumis sativus]

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 144/226 (63%), Gaps = 44/226 (19%)

Query: 68  WLSN---FPTVETFVDISSNP------------NILKQQSPNSVLENSNSSSSTSTNGST 112
           WLSN   FP VETFVDI S+             ++ KQ SP SVLE    S+S S++G T
Sbjct: 75  WLSNEDAFPAVETFVDILSDHHHHHAPQPPPLPSVSKQNSPVSVLE----STSISSHGET 130

Query: 113 ITNGNN---NSNSIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPV 169
              GN    +S+SI+M+CCG+L+VP +ARSK R   R   ++          S K  K V
Sbjct: 131 TNGGNKTSVHSSSILMSCCGSLKVPSKARSKRR---RGRHISGHHLLFKQQPSSKNLKQV 187

Query: 170 V-------------SKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPE 216
           V                 IGRKC HCGAEKTPQWRAGP GPKTLCNACGVRFKSGRLVPE
Sbjct: 188 VPTTATAAVVAATTGTAGIGRKCLHCGAEKTPQWRAGPFGPKTLCNACGVRFKSGRLVPE 247

Query: 217 YRPANSPTFSSELHSNSHRKVVEMRRQKQMMGIELGVLGVKPVDKG 262
           YRPA+SPTFS+ELHSNSHRKV+EMRRQKQ     LG++ V P+DKG
Sbjct: 248 YRPASSPTFSAELHSNSHRKVMEMRRQKQ-----LGMV-VNPMDKG 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433393|ref|XP_002285624.1| PREDICTED: GATA transcription factor 1-like [Vitis vinifera]

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/259 (51%), Positives = 162/259 (62%), Gaps = 31/259 (11%)

Query: 1   MESLDLQVCCIDDLLDFNINDDECGKPTKRPRNALSSVNRNGCDFDVFEAGDDTDRLFPE 60
           MESLD   C +DDLLDF+ +  E      + R   SS             G  +  L   
Sbjct: 1   MESLDPAACFVDDLLDFSSDIGEDDDDDHKRRTRSSSS---------LLVGGHSRSLPDP 51

Query: 61  CAEEELEWLSN--FPTVETFVDI--SSNPNILKQQSPNSVLENSNSSSSTSTNGSTITNG 116
             EEELEWL+   FP VETF+D   +S  NI KQQSP SVLENS+ SSS++ + S+ T  
Sbjct: 52  PVEEELEWLNKDVFPGVETFLDYLPTSVENIPKQQSPISVLENSSHSSSSNNSNSSTTT- 110

Query: 117 NNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLN---QEAWWGSVHGSVKA-------A 166
                  IM+CC N RVP RARSK R R  ++  +   Q  WW S  G+  A       +
Sbjct: 111 -------IMSCCENFRVPSRARSKRRRRRHKDFSDIPGQPWWWWSSQGNTNANHSSPTNS 163

Query: 167 KPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFS 226
           K  ++   IGRKCQHC AEKTPQWRAGP+GPKTLCNACGVR+KSGRLV EYRPA+SPTFS
Sbjct: 164 KQTITSSTIGRKCQHCQAEKTPQWRAGPLGPKTLCNACGVRYKSGRLVAEYRPASSPTFS 223

Query: 227 SELHSNSHRKVVEMRRQKQ 245
           S++HSNSHRK++EMR+ KQ
Sbjct: 224 SKVHSNSHRKIMEMRKLKQ 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37572445|dbj|BAC98492.1| AG-motif binding protein-2 [Nicotiana tabacum]

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 136/211 (64%), Gaps = 29/211 (13%)

Query: 59  PECAEEELEWLSN---FPTVETFVDISSNPNI-LKQQSPNSVLENSNSSSSTSTNGSTIT 114
           PEC EEELEWLSN   FP VE F  ++ NP+I     SP SVLENS+S+ ++S NGS   
Sbjct: 74  PECVEEELEWLSNKDAFPAVE-FGILADNPSIVFDHHSPVSVLENSSSTCNSSGNGSANA 132

Query: 115 NGNNNSNSIIMNCCGNLRVPV-RARSKLRTRCRRELLNQEAWWGSVH---------GSVK 164
           N         M+CC +L+VPV         R RR      A   S H          SVK
Sbjct: 133 NA-------YMSCCASLKVPVNYPVRARSKRRRRRQRGSFADLPSEHCMSVNKPSFKSVK 185

Query: 165 AAKPVVSKVI-------IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEY 217
             +P++S  +       IGR+CQHCGA+KTPQWRAGP+GPKTLCNACGVR+KSGRL+PEY
Sbjct: 186 QREPLLSLPLNSAKSASIGRRCQHCGADKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEY 245

Query: 218 RPANSPTFSSELHSNSHRKVVEMRRQKQMMG 248
           RPANSPTFS  +HSNSHRKV+EMR+QK  +G
Sbjct: 246 RPANSPTFSPTVHSNSHRKVLEMRKQKIGVG 276

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229571|ref|NP_189047.1| GATA transcription factor 1 [Arabidopsis thaliana] gi|62900367|sp|Q8LAU9.2|GATA1_ARATH RecName: Full=GATA transcription factor 1; Short=AtGATA-1 gi|2959730|emb|CAA73999.1| homologous to GATA-binding transcription factors [Arabidopsis thaliana] gi|9294674|dbj|BAB03023.1| protein homologous to GATA-binding transcription factors [Arabidopsis thaliana] gi|87116628|gb|ABD19678.1| At3g24050 [Arabidopsis thaliana] gi|332643327|gb|AEE76848.1| GATA transcription factor 1 [Arabidopsis thaliana]

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/263 (44%), Positives = 160/263 (60%), Gaps = 35/263 (13%)

Query: 11  IDDLLDFNI--NDDECGKPTKRPRNALSSVN--RNGCDFDVFEAGDDTDRLFPECAEEEL 66
           +DDLL+F++   +++  + T+ PRN        R    F +F   D          EE+L
Sbjct: 7   MDDLLNFSVPEEEEDDDEHTQPPRNITRRKTGLRPTDSFGLFNTDD-----LGVVEEEDL 61

Query: 67  EWLSN---FPTVETFVDISSNPNI------------LKQQSPNSVLENSNSSSSTSTNGS 111
           EW+SN   FP +ETFV +  + +             +KQ SP SVLE S+ SS+T+T+ S
Sbjct: 62  EWISNKNAFPVIETFVGVLPSEHFPITSLLEREATEVKQLSPVSVLETSSHSSTTTTSNS 121

Query: 112 TITNGNNNSNSI------IMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKA 165
           +  +  + + +       IM+CC   + P +ARSK R         +  W G+  G ++ 
Sbjct: 122 SGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRRRT--GRRDLRVLWTGNEQGGIQK 179

Query: 166 AKPV---VSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANS 222
            K +    + +I+GRKCQHCGAEKTPQWRAGP GPKTLCNACGVR+KSGRLVPEYRPANS
Sbjct: 180 KKTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANS 239

Query: 223 PTFSSELHSNSHRKVVEMRRQKQ 245
           PTF++ELHSNSHRK+VEMR+Q Q
Sbjct: 240 PTFTAELHSNSHRKIVEMRKQYQ 262

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593190|gb|AAM65139.1| GATA transcription factor 1 (AtGATA-1) [Arabidopsis thaliana]

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 117/263 (44%), Positives = 160/263 (60%), Gaps = 35/263 (13%)

Query: 11  IDDLLDFNI--NDDECGKPTKRPRNALSSVN--RNGCDFDVFEAGDDTDRLFPECAEEEL 66
           +DDLL+F++   +++  + T+ PRN        R    F +F   D          EE+L
Sbjct: 1   MDDLLNFSVPEEEEDDDEHTQPPRNITRRKTGLRPTDSFGLFNTDD-----LGVVEEEDL 55

Query: 67  EWLSN---FPTVETFVDISSNPNI------------LKQQSPNSVLENSNSSSSTSTNGS 111
           +W+SN   FP +ETFV +  + +             +KQ SP SVLE S+ SS+T+T+ S
Sbjct: 56  QWISNKNAFPVIETFVGVLPSEHFPITSLLEREATEVKQLSPVSVLETSSHSSTTTTSNS 115

Query: 112 TITNGNNNSNSI------IMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKA 165
           +  +  + + +       IM+CC   + P +ARSK R         +  W G+  G ++ 
Sbjct: 116 SGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRRRT--GRRDLRVLWTGNEQGGIQK 173

Query: 166 AKPV---VSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANS 222
            K +    + +I+GRKCQHCGAEKTPQWRAGP GPKTLCNACGVR+KSGRLVPEYRPANS
Sbjct: 174 KKTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANS 233

Query: 223 PTFSSELHSNSHRKVVEMRRQKQ 245
           PTF++ELHSNSHRK+VEMR+Q Q
Sbjct: 234 PTFTAELHSNSHRKIVEMRKQYQ 256

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835478|ref|XP_002885621.1| hypothetical protein ARALYDRAFT_479930 [Arabidopsis lyrata subsp. lyrata] gi|297331461|gb|EFH61880.1| hypothetical protein ARALYDRAFT_479930 [Arabidopsis lyrata subsp. lyrata]

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 122/261 (46%), Positives = 159/261 (60%), Gaps = 33/261 (12%)

Query: 11  IDDLLDFNINDDECGKP--TKRPRNALSSVN--RNGCDFDVFEAGDDTDRLFPECAEEEL 66
           +DDLL+F++ ++E      T+ PRN        R    F +F   D          EE+L
Sbjct: 7   MDDLLNFSVPEEEEDDEENTQPPRNITRRKTGIRQTDSFGLFNTDD-----LGVVEEEDL 61

Query: 67  EWLSN---FPTVETFVDI-----SSNPNILKQQSPNSVLENSNSSSSTSTNGSTITNGNN 118
           EW+SN   FP +ETFV +            KQ SP SVLE S+ SS+T+T  ++ ++G +
Sbjct: 62  EWISNKNAFPVIETFVGVLPLSPEREATEGKQLSPVSVLETSSHSSTTTTATTSNSSGGS 121

Query: 119 NSNSI----------IMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAK- 167
           N ++           IM+CC   + P +ARSK R   RR+L     W G+    ++  K 
Sbjct: 122 NGSTAVATTATTTTTIMSCCVGFKAPAKARSKRRRTGRRDL--GVLWTGNEQVGIQKRKT 179

Query: 168 ---PVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPT 224
                 + +I+GRKCQHCGAEKTPQWRAGP GPKTLCNACGVR+KSGRLVPEYRPANSPT
Sbjct: 180 PSVAAAAAMIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPT 239

Query: 225 FSSELHSNSHRKVVEMRRQKQ 245
           F++ELHSNSHRK+VEMR+Q Q
Sbjct: 240 FTAELHSNSHRKIVEMRKQYQ 260

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481109|ref|XP_003610840.1| GATA transcription factor [Medicago truncatula] gi|355512175|gb|AES93798.1| GATA transcription factor [Medicago truncatula]

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/259 (44%), Positives = 154/259 (59%), Gaps = 40/259 (15%)

Query: 1   MESLDLQVCCIDDLLDF--NINDDECGKPTKRPRNALSSVNRNGCDFDVFEAGDDTDRLF 58
           ME+LD     +DDL  F  +I +D+  K     R A  SV+            DDT+  F
Sbjct: 1   MEALD----SVDDLWGFLSDIGEDDYDKS----RKAFPSVDL-----------DDTNHSF 41

Query: 59  PECAEEELEWLSN---FPTVETFVDISS-NPNILKQQSPNSVLENSNSSSSTSTNGSTIT 114
            E A E+LEWLSN   FP VETFVD S   P+I + Q    ++ENS SSS+++ + ++IT
Sbjct: 42  SEFAVEDLEWLSNKDAFPAVETFVDFSCIQPDISQNQKIAPIVENSTSSSNSNNSSNSIT 101

Query: 115 NGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLN----QEAWWGSVHGSVKAAKPVV 170
                    +++   +++ PVRARSK R++ R  + +    Q AW    + + K      
Sbjct: 102 ---------LLSGYNHVKFPVRARSKSRSKPRLGISDTWNHQFAWKQPNNKTSKEQAKQT 152

Query: 171 SKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELH 230
           S   IGR+C HCGA+ TP WR GP GPKTLCNACGVR++SGRLVPEYRPA SPTF + +H
Sbjct: 153 S--TIGRQCHHCGADNTPLWRTGPGGPKTLCNACGVRYRSGRLVPEYRPAKSPTFCNNVH 210

Query: 231 SNSHRKVVEMRRQKQMMGI 249
           SNSHRKVVE+   K  +GI
Sbjct: 211 SNSHRKVVEIILSKPHLGI 229

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110743205|dbj|BAE99493.1| GATA transcription factor 1 [Arabidopsis thaliana]

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/124 (62%), Positives = 93/124 (75%), Gaps = 5/124 (4%)

Query: 125 MNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPV---VSKVIIGRKCQH 181
           M+CC   + P +ARSK R         +  W G+  G ++  K +    + +I+GRKCQH
Sbjct: 1   MSCCVGFKAPAKARSKRRRT--GRRDLRVLWTGNEQGGIQKKKTMTVAAAALIMGRKCQH 58

Query: 182 CGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMR 241
           CGAEKTPQWRAGP GPKTLCNACGVR+KSGRLVPEYRPANSPTF++ELHSNSHRK+VEMR
Sbjct: 59  CGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMR 118

Query: 242 RQKQ 245
           +Q Q
Sbjct: 119 KQYQ 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2076191	274	GATA1 "GATA transcription fact	0.595	0.569	0.520	6e-46
TAIR|locus:2123738	308	GATA9 "GATA transcription fact	0.270	0.230	0.802	2.8e-36
TAIR|locus:2155056	339	GATA5 "GATA transcription fact	0.263	0.203	0.840	7.1e-34
TAIR|locus:2055589	264	GATA2 "GATA transcription fact	0.270	0.268	0.788	3.8e-33
TAIR|locus:2139594	269	GATA3 "GATA transcription fact	0.484	0.472	0.496	7.9e-33
TAIR|locus:2080828	312	GATA6 "GATA transcription fact	0.263	0.221	0.797	1.3e-32
TAIR|locus:2103346	240	GATA4 "GATA transcription fact	0.263	0.287	0.782	4.3e-32
TAIR|locus:2145259	331	GATA12 "GATA transcription fac	0.267	0.211	0.785	3.8e-31
TAIR|locus:2122214	238	GATA7 "GATA transcription fact	0.259	0.285	0.764	2e-30
TAIR|locus:2082637	322	BME3 "BLUE MICROPYLAR END 3" [	0.259	0.211	0.764	2.9e-29

TAIR|locus:2076191 GATA1 "GATA transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 87/167 (52%), Positives = 100/167 (59%)

Query:    88 LKQQSPNSVLEXXXXXXXXXXXXXX------XXXXXXXXXXXXMNCCGNLRVPVRARSKL 141
             +KQ SP SVLE                                M+CC   + P +ARSK 
Sbjct:    98 VKQLSPVSVLETSSHSSTTTTSNSSGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKR 157

Query:   142 RTRCRRELLNQEAWWGSVHGXXX---XXXXXXXXXIIGRKCQHCGAEKTPQWRAGPMGPK 198
             R   RR+L  +  W G+  G               I+GRKCQHCGAEKTPQWRAGP GPK
Sbjct:   158 RRTGRRDL--RVLWTGNEQGGIQKKKTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPK 215

Query:   199 TLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 245
             TLCNACGVR+KSGRLVPEYRPANSPTF++ELHSNSHRK+VEMR+Q Q
Sbjct:   216 TLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQYQ 262

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2123738 GATA9 "GATA transcription factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
 Identities = 57/71 (80%), Positives = 63/71 (88%)

Query:   176 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHR 235
             GR+C HC  EKTPQWR GPMGPKTLCNACGVR+KSGRLVPEYRPA+SPTF    HSNSHR
Sbjct:   196 GRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHR 255

Query:   236 KVVEMRRQKQM 246
             KV+E+RRQK+M
Sbjct:   256 KVMELRRQKEM 266

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2155056 GATA5 "GATA transcription factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 58/69 (84%), Positives = 64/69 (92%)

Query:   177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 236
             RKC HCG +KTPQWRAGPMG KTLCNACGVR+KSGRL+PEYRPA SPTFSSELHSN HRK
Sbjct:   249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRK 308

Query:   237 VVEMRRQKQ 245
             V+EMRR+K+
Sbjct:   309 VIEMRRKKE 317

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2055589 GATA2 "GATA transcription factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 56/71 (78%), Positives = 64/71 (90%)

Query:   177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 236
             R+C HC +EKTPQWR GP+GPKTLCNACGVRFKSGRLVPEYRPA+SPTF    HSNSHRK
Sbjct:   179 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRK 238

Query:   237 VVEMRRQKQMM 247
             V+E+RRQK++M
Sbjct:   239 VMELRRQKEVM 249

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2139594 GATA3 "GATA transcription factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
 Identities = 69/139 (49%), Positives = 84/139 (60%)

Query:   132 RVPVRARSKLRTRCRRELLNQEAW----WGSVHGXXXXXXXXXXXXII--GRKCQHCGAE 185
             R+PV+ R+K   R R  L     W        H             ++   R+C HCG  
Sbjct:   132 RIPVKPRTK---RSRNSLTGSRVWPLVSTNHQHAATEQLRKKKQETVLVFQRRCSHCGTN 188

Query:   186 KTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 245
              TPQWR GP+GPKTLCNACGVRFKSGRL PEYRPA+SPTFS+E+HSN HRKV+E+R+ K+
Sbjct:   189 NTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRKSKE 248

Query:   246 MMGIELGVLGVK--PVDKG 262
             + G E G    K  PV  G
Sbjct:   249 L-GEETGEASTKSDPVKFG 266

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2080828 GATA6 "GATA transcription factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 55/69 (79%), Positives = 63/69 (91%)

Query:   177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 236
             R+C HCG +KTPQWRAGP+G KTLCNACGVR+KSGRL+PEYRPA SPTFSSELHSN H K
Sbjct:   221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHSK 280

Query:   237 VVEMRRQKQ 245
             V+EMRR+K+
Sbjct:   281 VIEMRRKKE 289

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2103346 GATA4 "GATA transcription factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 54/69 (78%), Positives = 62/69 (89%)

Query:   177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 236
             R+C HC +EKTPQWR GP+GPKTLCNACGVR+KSGRLVPEYRPA+SPTF    HSNSHRK
Sbjct:   158 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRK 217

Query:   237 VVEMRRQKQ 245
             V+E+RRQK+
Sbjct:   218 VMELRRQKE 226

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2145259 GATA12 "GATA transcription factor 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 55/70 (78%), Positives = 61/70 (87%)

Query:   177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 236
             R+C HC  +KTPQWR GPMGPKTLCNACGVR+KSGRLVPEYRPA SPTF    HSNSHRK
Sbjct:   219 RRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRK 278

Query:   237 VVEMRRQKQM 246
             V+E+RRQK+M
Sbjct:   279 VMELRRQKEM 288

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2122214 GATA7 "GATA transcription factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
 Identities = 52/68 (76%), Positives = 60/68 (88%)

Query:   177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 236
             R C HCG +KTPQWR GP+G KTLCNACGVRFKSGRL+PEYRPA SPTF++E+HSNSHRK
Sbjct:   164 RCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNEIHSNSHRK 223

Query:   237 VVEMRRQK 244
             V+E+R  K
Sbjct:   224 VLELRLMK 231

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2082637 BME3 "BLUE MICROPYLAR END 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 52/68 (76%), Positives = 57/68 (83%)

Query:   177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 236
             RKC HC   KTPQWR GPMGPKTLCNACGVR+KSGRL PEYRPA SPTF+  LHSNSH+K
Sbjct:   229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKK 288

Query:   237 VVEMRRQK 244
             V EMR ++
Sbjct:   289 VAEMRNKR 296

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LAU9	GATA1_ARATH	No assigned EC number	0.4486	0.8702	0.8321	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	6e-13
pfam00320	36	pfam00320, GATA, GATA zinc finger	9e-13
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	2e-11

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 61.7 bits (150), Expect = 6e-13
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 175 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSS 227
            GR C +CG  +TP WR GP G KTLCNACG+ +K    +   RP +      
Sbjct: 2   SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLK--RPLSLKKDGI 52

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 60.8 bits (148), Expect = 9e-13
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 179 CQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV 214
           C +CG  KTP WR GP G +TLCNACG+ ++   L 
Sbjct: 1   CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 178 KCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFS 226
            C +CG   TP WR GP G  TLCNACG+ +K        RP +     
Sbjct: 1   ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRKKD 46

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.54
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.52
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.47
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	99.15
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.08

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.54  E-value=3.8e-15  Score=107.51  Aligned_cols=44  Identities=45%  Similarity=0.998  Sum_probs=38.5

Q ss_pred             ccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCCCCCCCCCCCC
Q 024771          178 KCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPT  224 (262)
Q Consensus       178 ~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rllp~yrpa~sPt  224 (262)
                      .|+||++++||+||+||.|..+|||||||||++++   .+||...+.
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~---~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRK   44 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC---CCCCcccCc
Confidence            59999999999999999888999999999999876   567766544

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.52  E-value=8e-15  Score=104.80  Aligned_cols=40  Identities=53%  Similarity=1.136  Sum_probs=36.4

Q ss_pred             CCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCC
Q 024771          175 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV  214 (262)
Q Consensus       175 ~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rll  214 (262)
                      ..+.|+||++++||+||+||.|.++|||||||+|++++.+
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~   41 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGL   41 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCC
Confidence            4578999999999999999999889999999999976654

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.47  E-value=8.5e-15  Score=97.65  Aligned_cols=35  Identities=54%  Similarity=1.216  Sum_probs=28.0

Q ss_pred             cccCCCCCCCCcccCCCCCcccchhhhhhhhhCCC
Q 024771          179 CQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL  213 (262)
Q Consensus       179 C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rl  213 (262)
                      |+||++++||+||+||.|..+||||||++|++++.
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            89999999999999999988899999999998654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=99.15  E-value=3.3e-11  Score=100.36  Aligned_cols=71  Identities=59%  Similarity=1.176  Sum_probs=61.2

Q ss_pred             CcccccCCCCCCCCcccCCCCCcccchhhhhhhhhC---CCCCCCCCCCCCC--------------CCcccccc------
Q 024771          176 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSG---RLVPEYRPANSPT--------------FSSELHSN------  232 (262)
Q Consensus       176 ~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~---rllp~yrpa~sPt--------------f~~~~hs~------  232 (262)
                      ...|.+|+++.||+||+++.|++.+|||||++|+++   +.++.++.+..++              +....|.+      
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRPASSPRNVSPKGSGAVKGRTFTKSLHSNSAQLLL  278 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcCccccccccCccccccccCCCccccccCCCCCcccccchhhhhh
Confidence            589999999999999999999999999999999988   8889999888877              44445554      


Q ss_pred             -----------chHHHHHHHHhhcc
Q 024771          233 -----------SHRKVVEMRRQKQM  246 (262)
Q Consensus       233 -----------~hrkv~~~Rkqk~~  246 (262)
                                 .+.++.++++.+..
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~r~~~~  303 (340)
T KOG1601|consen  279 APSKSEPPLLSSHQRVAEVRRYRES  303 (340)
T ss_pred             hhcccCccccccchHHHHHhhccCc
Confidence                       78888888887764

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.08  E-value=1.5e-06  Score=86.52  Aligned_cols=55  Identities=29%  Similarity=0.513  Sum_probs=41.0

Q ss_pred             CCcccccCCCCCCCCcccCCCC----CcccchhhhhhhhhCCCCCCCCCCCCCCCCccccc
Q 024771          175 IGRKCQHCGAEKTPQWRAGPMG----PKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHS  231 (262)
Q Consensus       175 ~~r~C~nCgtt~TP~WRrGP~G----~~tLCNACGL~ykk~rllp~yrpa~sPtf~~~~hs  231 (262)
                      ...+|.||.++.||+|||+..+    .-+|||||||+|+-++..-+  |...++...+.|.
T Consensus       157 ~~~vc~Nc~t~stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~~r~--P~t~ks~~~ks~~  215 (498)
T COG5641         157 QPHVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLKLHGSPRA--PISLKSDSIKSRS  215 (498)
T ss_pred             ccchhccccccCCccccccccccccCCccccccccccccccCCcCC--Ccccccccccccc
Confidence            3349999999999999999993    38999999999975554322  6665555444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	6e-12
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	6e-08
3dfx_A	63	Trans-acting T-cell-specific transcription factor	1e-06
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	3e-06

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 59.1 bits (143), Expect = 6e-12
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 176 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPA 220
             +C +C   +T +WR         CNAC +  +      + RP 
Sbjct: 8   SFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQR---KYNKTRPV 49

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 53.2 bits (128), Expect = 4e-10
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 176 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK 209
            R+C +CGA  TP WR    G   LCNACG+  K
Sbjct: 4   ARECVNCGATATPLWRRDRTG-HYLCNACGLYHK 36

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 4e-09
 Identities = 40/265 (15%), Positives = 82/265 (30%), Gaps = 62/265 (23%)

Query: 2   ESLDLQVCCIDDLLDFN---INDDECGKPTKRPRNALSSVNRNGCDFDVFEAGDD---TD 55
           E+ + Q    D L  F    +++ +C      P++ LS       D  +  + D    T 
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE---ID-HIIMSKDAVSGTL 65

Query: 56  RLFPECAEEELEWL---SNFPTVETFVDISSNPN---ILKQQSPNSVLENSNSSSSTSTN 109
           RLF         W         V+ FV+     N   ++     + +       S  +  
Sbjct: 66  RLF---------WTLLSKQEEMVQKFVEEVLRINYKFLM-----SPIKTEQRQPSMMTRM 111

Query: 110 GSTITNGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLN-QEAWWGSVHG------S 162
                +   N N +         V    R +   + R+ LL  + A    + G      +
Sbjct: 112 YIEQRDRLYNDNQVFA----KYNVS---RLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 163 VKAAKPVVSKVIIGRKCQH-----CGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEY 217
             A    +S  +  +              +P+     +  + L           ++ P +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML--QKLLY---------QIDPNW 213

Query: 218 RPANSPTFSSELHSNSHRKVVEMRR 242
              +  + + +L  +S +   E+RR
Sbjct: 214 TSRSDHSSNIKLRIHSIQA--ELRR 236

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 47.1 bits (112), Expect = 6e-08
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK 209
             C +C  + TP WR  P G + LCNACG+  K
Sbjct: 2   TTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK 33

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 176 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK 209
           G  C +C    T  WR    G   +CNACG+ +K
Sbjct: 7   GTSCANCQTTTTTLWRRNANG-DPVCNACGLYYK 39

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 176 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPAN 221
              C +C  + TP WR  P G + LCNACG+  K   L    RP +
Sbjct: 9   PTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPLS 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.65
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.61
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.6
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.56
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.53
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.51
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.22
2zjr_Z	60	50S ribosomal protein L32; ribosome, large ribosom	80.43

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.65  E-value=1.3e-17  Score=123.29  Aligned_cols=43  Identities=35%  Similarity=0.814  Sum_probs=37.6

Q ss_pred             CCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCCCCCCC
Q 024771          173 VIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRP  219 (262)
Q Consensus       173 ~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rllp~yrp  219 (262)
                      ......|+||++++||+||+||+|+ +|||||||+|++++.   +||
T Consensus         4 ~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~---~RP   46 (63)
T 3dfx_A            4 RRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI---NRP   46 (63)
T ss_dssp             CCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS---CCC
T ss_pred             CCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC---CCC
Confidence            3456789999999999999999996 999999999998775   455

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.61  E-value=3.6e-16  Score=109.27  Aligned_cols=39  Identities=44%  Similarity=0.863  Sum_probs=35.4

Q ss_pred             CCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCC
Q 024771          175 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV  214 (262)
Q Consensus       175 ~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rll  214 (262)
                      ..+.|+||++++||+||+||+|+ +|||||||||++++..
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~   41 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN   41 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC
Confidence            46789999999999999999995 9999999999987654

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.60  E-value=2.3e-16  Score=108.80  Aligned_cols=37  Identities=43%  Similarity=0.944  Sum_probs=34.0

Q ss_pred             cccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCC
Q 024771          177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV  214 (262)
Q Consensus       177 r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rll  214 (262)
                      +.|++|++++||+||+||+|+ +|||||||||++++.+
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~   38 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV   38 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence            579999999999999999996 9999999999987654

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.56  E-value=1.4e-15  Score=114.74  Aligned_cols=44  Identities=25%  Similarity=0.431  Sum_probs=33.8

Q ss_pred             CCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCCCCCCC
Q 024771          173 VIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRP  219 (262)
Q Consensus       173 ~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rllp~yrp  219 (262)
                      ......|+||+|++||+||+|+.+..+|||||||||++++.   +||
T Consensus         5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~---~RP   48 (71)
T 2kae_A            5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNK---TRP   48 (71)
T ss_dssp             ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHS---CCC
T ss_pred             CCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCC---CCC
Confidence            34568999999999999999544444999999999997654   455

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.53  E-value=2.1e-15  Score=112.27  Aligned_cols=40  Identities=38%  Similarity=0.759  Sum_probs=35.8

Q ss_pred             CCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCC
Q 024771          173 VIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL  213 (262)
Q Consensus       173 ~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rl  213 (262)
                      ....+.|+||++++||+||+||+|. +|||||||||++++.
T Consensus         6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~   45 (66)
T 4gat_A            6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV   45 (66)
T ss_dssp             SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC
Confidence            3456899999999999999999995 999999999997655

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.51  E-value=1.6e-15  Score=122.75  Aligned_cols=48  Identities=27%  Similarity=0.668  Sum_probs=40.3

Q ss_pred             CCCCCcCCCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCC
Q 024771          166 AKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV  214 (262)
Q Consensus       166 ~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rll  214 (262)
                      +++..........|+||+++.||+||+||+| ++|||||||||++++..
T Consensus        49 KKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~   96 (115)
T 4hc9_A           49 KRRLSAARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN   96 (115)
T ss_dssp             CCCCCCCCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC
T ss_pred             cccccccccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC
Confidence            3334444566789999999999999999999 99999999999977654

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.22  E-value=3.5e-12  Score=103.21  Aligned_cols=38  Identities=47%  Similarity=1.017  Sum_probs=32.9

Q ss_pred             CCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCC
Q 024771          175 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL  213 (262)
Q Consensus       175 ~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rl  213 (262)
                      ..+.|+||+++.||+||+|++| .+|||||||||+.++.
T Consensus         4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~   41 (115)
T 4hc9_A            4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQ   41 (115)
T ss_dssp             --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhccc
Confidence            4689999999999999999999 8999999999985443

>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...

Probab=80.43  E-value=0.72  Score=33.26  Aligned_cols=50  Identities=24%  Similarity=0.478  Sum_probs=31.9

Q ss_pred             cCcccccCCCCCccchhccccCcccccCcCCCccCCCCCCcCCCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhh
Q 024771          131 LRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK  209 (262)
Q Consensus       131 l~vP~kaRSKR~R~~~r~~~~~p~~~~s~~~~~kk~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~yk  209 (262)
                      +.||-+..||.+++.++..     |.            .  .....-.|.+||...-         ++.+|-.|| +|+
T Consensus         4 MAVPKrK~Sksrr~~RRsh-----~k------------l--~~p~l~~c~~cG~~~~---------pH~vc~~CG-~Y~   53 (60)
T 2zjr_Z            4 HPVPKKKTSKSKRDMRRSH-----HA------------L--TAPNLTECPQCHGKKL---------SHHICPNCG-YYD   53 (60)
T ss_dssp             CSCCSSCCCTTHHHHHTTT-----CC------------C--CCCCCEECTTTCCEEC---------TTBCCTTTC-BSS
T ss_pred             cccCCCCCChHHhhhhccc-----cc------------c--cCCCceECCCCCCEeC---------CceEcCCCC-cCC
Confidence            5688888787766665411     10            0  2334567999997632         379999999 443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	8e-12
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	4e-09
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	5e-09

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (136), Expect = 8e-12
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 176 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK 209
            R+C +CGA  TP WR    G   LCNACG+  K
Sbjct: 2   ARECVNCGATATPLWRRDRTG-HYLCNACGLYHK 34

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 49.0 bits (117), Expect = 4e-09
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 179 CQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPAN 221
           C +C  + TP WR  P G + LCNACG+  K   L    RP +
Sbjct: 3   CTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPLS 41

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.6 bits (118), Expect = 5e-09
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 176 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHR 235
           G  C +C    T  WR  PMG   +CNACG+ +K  ++    RP    T   +     +R
Sbjct: 4   GTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV---NRP---LTMRKDGIQTRNR 56

Query: 236 KVVEMRRQKQ 245
           KV    ++++
Sbjct: 57  KVSSKGKKRR 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.68
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.63
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.62
d2zjrz1	58	Ribosomal protein L32p {Deinococcus radiodurans [T	83.32
d2j0151	59	Ribosomal protein L32p {Thermus thermophilus [TaxI	81.39

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=4.8e-18  Score=113.90  Aligned_cols=37  Identities=46%  Similarity=0.959  Sum_probs=34.0

Q ss_pred             CCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCC
Q 024771          175 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGR  212 (262)
Q Consensus       175 ~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~r  212 (262)
                      +.++|+||++++||+||+||+| ++|||||||||+.++
T Consensus         1 e~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~G   37 (39)
T d1y0ja1           1 EARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNG   37 (39)
T ss_dssp             CCCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHSC
T ss_pred             CcCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHhC
Confidence            3578999999999999999999 799999999999765

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.63  E-value=3.2e-17  Score=111.42  Aligned_cols=35  Identities=43%  Similarity=0.984  Sum_probs=32.0

Q ss_pred             ccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCC
Q 024771          178 KCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL  213 (262)
Q Consensus       178 ~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rl  213 (262)
                      .|+||++++||+||+||+| ++|||||||||+.++.
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k~~g~   36 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGV   36 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHHHHSS
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHHHcCC
Confidence            6999999999999999999 8999999999986543

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.62  E-value=1.1e-17  Score=123.03  Aligned_cols=38  Identities=39%  Similarity=0.988  Sum_probs=34.4

Q ss_pred             CCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCC
Q 024771          175 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL  213 (262)
Q Consensus       175 ~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rl  213 (262)
                      .+..|+||++++||+||+||.| ++|||||||||++++.
T Consensus         3 ~g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~~   40 (66)
T d3gata_           3 AGTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV   40 (66)
T ss_dssp             TTCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCCcccccCCCC-CcccchhHHHHHHhCC
Confidence            3568999999999999999999 7999999999987654

>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=83.32  E-value=0.23  Score=34.11  Aligned_cols=49  Identities=24%  Similarity=0.460  Sum_probs=30.4

Q ss_pred             ccCcccccCCCCCccchhccccCcccccCcCCCccCCCCCCcCCCCCcccccCCCCCCCCcccCCCCCcccchhhhh
Q 024771          130 NLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGV  206 (262)
Q Consensus       130 ~l~vP~kaRSKR~R~~~r~~~~~p~~~~s~~~~~kk~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL  206 (262)
                      .++||-+.-||.++..++.-     |.            .  .....-.|.+||...-         ++.+|-.||.
T Consensus         2 ~~pVPKrk~SksRr~~RRsh-----~~------------l--~~p~l~~C~~CG~~~l---------pHrvC~~CG~   50 (58)
T d2zjrz1           2 KHPVPKKKTSKSKRDMRRSH-----HA------------L--TAPNLTECPQCHGKKL---------SHHICPNCGY   50 (58)
T ss_dssp             CCSCCSSCCCTTHHHHHTTT-----CC------------C--CCCCCEECTTTCCEEC---------TTBCCTTTCB
T ss_pred             CCCCCCCccCcccchhhhhh-----hh------------h--cCCceeECCCCCCCcc---------ceeeCCCCCc
Confidence            46788887777666554410     00            0  1223467999997543         3789999994

>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Thermus thermophilus [TaxId: 274]

Probab=81.39  E-value=0.32  Score=33.41  Aligned_cols=55  Identities=35%  Similarity=0.536  Sum_probs=32.8

Q ss_pred             ccCcccccCCCCCccchhccccCcccccCcCCCccCCCCCCcCCCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhh
Q 024771          130 NLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK  209 (262)
Q Consensus       130 ~l~vP~kaRSKR~R~~~r~~~~~p~~~~s~~~~~kk~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~yk  209 (262)
                      .++||-+.-||.++..++.-     |.+              .....-.|.+||...         -++.+|-.||. | 
T Consensus         2 ~~pVPKrk~Sksr~~~RRsh-----~~l--------------~~p~l~~C~~CG~~~---------~pHrvC~~CG~-Y-   51 (59)
T d2j0151           2 KHPVPKKKTSKARRDARRSH-----HAL--------------TPPTLVPCPECKAMK---------PPHTVCPECGY-Y-   51 (59)
T ss_dssp             CSSCCSSCCCHHHHHHHHGG-----GCC--------------CCCCCBCCSSSSSCB---------CTTCBCTTTCC-S-
T ss_pred             CCCCCCCcccchhchhhhcc-----ccc--------------cCCceeECCCCCCcc---------cceeECCCCCe-E-
Confidence            46788887776665554411     111              112346799999843         34789999994 4 


Q ss_pred             hCCCC
Q 024771          210 SGRLV  214 (262)
Q Consensus       210 k~rll  214 (262)
                      +|+.+
T Consensus        52 kGr~V   56 (59)
T d2j0151          52 AGRKV   56 (59)
T ss_dssp             SSCCS
T ss_pred             CCEEe
Confidence            34443