Citrus Sinensis ID: 024772

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MSSPAGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVRPSFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAENV
Secondary Structure (PSIPRED)
ccccccccccccccEEHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHEEEEEEEEccccEEEEEEEccHHHHHHHHHHHHEEcccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHcHcHHHHHHEccccccccHHHHHHHHHHHHccccEEEcccccHEEEEEccHHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHccHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHccc
Coil and Loop (DISEMBL)
msspaggsllFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLalipartiPFAWNLLTAGyieqtvhgvrpsfdvkkftymplsgfqGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYlqkkpetklsgdpsddfafssffpefirpvidPIASIFHRMlcgrrtetsgddhgytlggaslpgsdpieaSRRRERGARALEERLATEKLAAAQSVEESKKDAAENV
Flexible Loop (DISEMBL)
msspaggsLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVRPSFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYtlggaslpgsdpieaSRRRERGARALEERLATeklaaaqsveeskkdaaenv
Low Complexity Region (SEG)
MSSPAGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVRPSFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGdpsddfafssffpefIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLGGASLPGSDPIeasrrrergaraleerlateklaaaQSVEESKKDAAENV
Disordered region (IsUnstruct)
*******SLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVRPSFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQK************DFAFSSFFPEFIRPVIDPIASIFHRMLCGRR**************************************************************
Disordered Region (DISOPRED)
*****GG*LLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVRPSFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYL**************DFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTE**************************RERGARAL**************************
Disordered Region (DISEMBL)
MSSPAGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVRPSFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATE*******************
Disordered Region (DISPRO)
********LLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVRPSFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTET******************************R****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSPAGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVRPSFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAENV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q12893	351	Transmembrane protein 115	yes	no	0.706	0.527	0.323	2e-16
Q9WUH1	350	Transmembrane protein 115	yes	no	0.706	0.528	0.316	3e-16
A4FUB8	351	Transmembrane protein 115	yes	no	0.706	0.527	0.328	3e-16
Q12239	342	Uncharacterized membrane	yes	no	0.618	0.473	0.257	4e-07

>sp|Q12893|TM115_HUMAN Transmembrane protein 115 OS=Homo sapiens GN=TMEM115 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 101/195 (51%), Gaps = 10/195 (5%)

Query: 72  SFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQE-LYLLKIKAKWLPSLMLLLSIAISFF 130
           SF++     + + G  G L G LV +KQ + D   L + +++   +P L+L L + +   
Sbjct: 124 SFNLVYLFTVRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVMPMLLLALLLLLRLA 183

Query: 131 TAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIAS 190
           T   +  L +  FG    W+YLR+ Q+    +  GD +D FAF++FFPE ++PV+  +A+
Sbjct: 184 TLLQSPALASYGFGLLSSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLAN 241

Query: 191 IFHRMLC----GRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLA 246
           + H +L      ++T    D    +    SLPG+DP +A RRR+   +AL ERL   K  
Sbjct: 242 LVHSLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERL---KRV 298

Query: 247 AAQSVEESKKDAAEN 261
             QS+  S  D  E 
Sbjct: 299 EDQSIWPSMDDDEEE 313

Homo sapiens (taxid: 9606)

>sp|Q9WUH1|TM115_MOUSE Transmembrane protein 115 OS=Mus musculus GN=Tmem115 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 105/193 (54%), Gaps = 8/193 (4%)

Query: 72  SFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQE-LYLLKIKAKWLPSLMLLLSIAISFF 130
           SF++     + + G  G L G LV +KQ + D   L + +++   +P L+L L + +   
Sbjct: 124 SFNLVYLFTIRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVVPMLLLALLLLLRLA 183

Query: 131 TAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIAS 190
           T   +  L +  FG    W+YLR+ Q+    +  GD +D FAF++FFPE ++PV+  +A+
Sbjct: 184 TLLQSPALASYGFGLLSSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLAN 241

Query: 191 IFHRMLC----GRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLA-TEKL 245
           + H +L      ++T    D    +    SLPG+DP +A RRR+   +AL ERL   E  
Sbjct: 242 LVHGLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERLKRVEDQ 301

Query: 246 AAAQSVEESKKDA 258
           +A  S+++ +++A
Sbjct: 302 SAWPSMDDDEEEA 314

Mus musculus (taxid: 10090)

>sp|A4FUB8|TM115_BOVIN Transmembrane protein 115 OS=Bos taurus GN=TMEM115 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 101/195 (51%), Gaps = 10/195 (5%)

Query: 72  SFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQE-LYLLKIKAKWLPSLMLLLSIAISFF 130
           SF++     + + G  G L G LV +KQ + D   L + +++   +P L+L L + +   
Sbjct: 124 SFNLVYLFTVRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVVPMLLLGLLLLLRLA 183

Query: 131 TAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIAS 190
           T   +  L +  FG    W+YLR+ Q+    +  GD +D FAF++FFPE ++PV+  +A+
Sbjct: 184 TLLQSPALASYGFGLISSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLAN 241

Query: 191 IFHRMLC----GRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLA 246
           + H +L      ++T    D    +    SLPG+DP +A RRR+   +AL ERL   K  
Sbjct: 242 LVHGLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERL---KRV 298

Query: 247 AAQSVEESKKDAAEN 261
             QSV  S  D  E 
Sbjct: 299 EDQSVWPSMDDDEEE 313

Bos taurus (taxid: 9913)

>sp|Q12239|YO107_YEAST Uncharacterized membrane protein YOL107W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL107W PE=1 SV=1

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 28/190 (14%)

Query: 81  MPLSGFQGVLAGFLVGIKQIVPDQELYLLK--------IKAKWLPSLMLLLSIAISFFTA 132
           +PL G   +L GF +  +Q++P+  +  LK         + K LP  ++           
Sbjct: 152 IPLDGNYTILIGFPIIYRQLLPETTIIHLKTPQFLAKNFRFKLLPIFVMFTMTVTQIIWF 211

Query: 133 ESAAYLPTLIFGTYMGWIYLRYLQKK--------PETK-------LSGDPSDDFAFSSFF 177
              A L ++    +  W YLR+ QK         P T        L GD SD F    FF
Sbjct: 212 HHFAQLFSIWVTFFASWSYLRFFQKLAPLNCPSLPTTNSQGGQEILVGDASDTFQLIYFF 271

Query: 178 PEFIRPVIDPIAS-IFHRMLCGRRTETSGDDHGYTLGG--ASLPGSDPIEA--SRRRERG 232
           P+ I+P++ PI + I++ ++   +      D    +G   A   G+  I     RRR+  
Sbjct: 272 PDLIKPILRPIFNFIYNVVVVKFKVIKPFHDIDIDIGNTIAESRGAKKIMTVEERRRQLA 331

Query: 233 ARALEERLAT 242
            + LEER+  
Sbjct: 332 LQVLEERMVN 341

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
118485684	303	unknown [Populus trichocarpa]	0.977	0.844	0.669	1e-106
255585086	308	Transmembrane protein, putative [Ricinus	0.996	0.847	0.650	6e-99
225449084	311	PREDICTED: transmembrane protein 115 [Vi	0.996	0.839	0.628	1e-96
388512181	309	unknown [Lotus japonicus]	0.996	0.844	0.583	5e-95
224113005	275	hypothetical protein POPTRDRAFT_659857 [	0.870	0.829	0.659	7e-95
224097969	275	predicted protein [Populus trichocarpa]	0.870	0.829	0.666	3e-94
356498564	306	PREDICTED: transmembrane protein 115-lik	0.988	0.846	0.592	1e-93
297829360	304	hypothetical protein ARALYDRAFT_896969 [	0.988	0.851	0.618	1e-93
449452106	308	PREDICTED: transmembrane protein 115-lik	0.996	0.847	0.624	4e-92
18398108	304	rhomboid protein-like protein [Arabidops	0.988	0.851	0.609	1e-91

>gi|118485684|gb|ABK94692.1| unknown [Populus trichocarpa]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/309 (66%), Positives = 230/309 (74%), Gaps = 53/309 (17%)

Query: 1   MSSPA--GGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLT 58
           MSSP   GG+ LFTGFTKLCKGLAVVLV  HILVQ+LP +V+ LALIPARTIPF WNL+T
Sbjct: 1   MSSPPILGGASLFTGFTKLCKGLAVVLVTCHILVQILPPAVNYLALIPARTIPFVWNLIT 60

Query: 59  AGYIEQTVHGV--------------RPSFDVKKFT------------------------- 79
           AGYIEQ+++GV               P +  K+F                          
Sbjct: 61  AGYIEQSIYGVVASTLCLLIMGKLLEPVWGSKEFLKFIFIVNFLISICVFITAISLYYIT 120

Query: 80  ------YMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAE 133
                 YMP+SGFQG+LAGFLVGIKQI+PDQEL LL+IKAKW PSLMLL++IAISFFTAE
Sbjct: 121 RQENYLYMPISGFQGILAGFLVGIKQIIPDQELSLLRIKAKWFPSLMLLIAIAISFFTAE 180

Query: 134 SAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFH 193
           SAAYLPTLIFGTYM WIYLRY Q+KPETKL GDPSDDFAFSSFFPE +RP+IDPIASIFH
Sbjct: 181 SAAYLPTLIFGTYMSWIYLRYFQRKPETKLRGDPSDDFAFSSFFPESLRPIIDPIASIFH 240

Query: 194 RMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEE 253
           RMLCG R ETS + HG TLG ASLPGSDPIEA+RRRERGARALEERLAT     A S EE
Sbjct: 241 RMLCG-RFETSTEAHGDTLGDASLPGSDPIEATRRRERGARALEERLAT-----APSAEE 294

Query: 254 SKKDAAENV 262
            K+DA+ENV
Sbjct: 295 LKRDASENV 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585086|ref|XP_002533249.1| Transmembrane protein, putative [Ricinus communis] gi|223526929|gb|EEF29134.1| Transmembrane protein, putative [Ricinus communis]

 Score =  366 bits (939), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 201/309 (65%), Positives = 238/309 (77%), Gaps = 48/309 (15%)

Query: 1   MSSPA--GGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLT 58
           MSSP+  GG+ L++GFT+LCKGLAVVLV GH++VQ+LP+S+S LALIPA+TIPF WNL+T
Sbjct: 1   MSSPSIPGGTALYSGFTRLCKGLAVVLVAGHLIVQILPSSLSYLALIPAKTIPFGWNLIT 60

Query: 59  AGYIEQTVHGV--------------RPSFDVKKFT------------------------- 79
           AGYIEQ+++GV               P +  K+F                          
Sbjct: 61  AGYIEQSIYGVVVSTLCLLIMGKLLEPVWGSKEFLKFIFIVNFLTSVCVFITAIALYYIT 120

Query: 80  ------YMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAE 133
                 YMP+SGFQGVL+GFLVG+KQI+PDQEL +L+IKAKWLPSL LLLSIA+SFFT E
Sbjct: 121 TQENYLYMPISGFQGVLSGFLVGMKQIIPDQELSVLRIKAKWLPSLALLLSIAVSFFTPE 180

Query: 134 SAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFH 193
           S  YLPT+IFGTY+ WIYLRYLQ+KPETKL GDP+DDFAFS+FFPEF+RPVIDPIASIFH
Sbjct: 181 SVTYLPTIIFGTYLSWIYLRYLQRKPETKLRGDPNDDFAFSTFFPEFLRPVIDPIASIFH 240

Query: 194 RMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEE 253
           RMLCG R+ETS +  GYTLGGA LPGSDPIEASRRRERGARALEERLA E+LAAA+S ++
Sbjct: 241 RMLCG-RSETSTEAQGYTLGGAPLPGSDPIEASRRRERGARALEERLAAERLAAARSSDD 299

Query: 254 SKKDAAENV 262
            KKDA+ENV
Sbjct: 300 LKKDASENV 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449084|ref|XP_002275709.1| PREDICTED: transmembrane protein 115 [Vitis vinifera] gi|296086036|emb|CBI31477.3| unnamed protein product [Vitis vinifera]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/312 (62%), Positives = 231/312 (74%), Gaps = 51/312 (16%)

Query: 1   MSSPA--GGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLT 58
           MSS A  GG+  F+GFT+LCKGLAVV+VGGH++VQ  P++V+ LALIPARTIPFAWNL+T
Sbjct: 1   MSSSALSGGTGNFSGFTRLCKGLAVVIVGGHVVVQFFPSAVAYLALIPARTIPFAWNLIT 60

Query: 59  AGYIEQTVHG--------------VRPSFDVKKFT------------------------- 79
           +GYIEQT++G              + P +  ++F                          
Sbjct: 61  SGYIEQTIYGTVVSTVGLLFLGKLLEPIWGTREFLKFIFVVNFLTSVCVFITAIALYYIT 120

Query: 80  ------YMPLSGFQGVLAGFLVGIKQIVPDQELYL---LKIKAKWLPSLMLLLSIAISFF 130
                 YMPLSGF GVL+GFLVGIKQI+PDQEL L   LKI+A+WLPSLMLLLSIAISFF
Sbjct: 121 RQENYLYMPLSGFHGVLSGFLVGIKQIIPDQELSLFSLLKIRARWLPSLMLLLSIAISFF 180

Query: 131 TAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIAS 190
           T ESAAYLP LIFGTYMGWIYLRYLQ+KPET+L GDPSD+FAFS+FFPEF+RPVIDPI S
Sbjct: 181 TTESAAYLPALIFGTYMGWIYLRYLQRKPETRLKGDPSDEFAFSTFFPEFLRPVIDPIGS 240

Query: 191 IFHRMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQS 250
           +F R+ CG R E S +D G+TLGGA LPGSDPIEASRRRERGARALEERLA E+L A +S
Sbjct: 241 VFGRLCCG-RFEISDEDRGHTLGGAPLPGSDPIEASRRRERGARALEERLAVERLTAGES 299

Query: 251 VEESKKDAAENV 262
            +ES +DA E+V
Sbjct: 300 AKESGRDAVEDV 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512181|gb|AFK44152.1| unknown [Lotus japonicus]

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 181/310 (58%), Positives = 218/310 (70%), Gaps = 49/310 (15%)

Query: 1   MSSP---AGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLL 57
           MS+P   + G+ LF+GFT+LCKGLAVVLVG H+L+   P++V+ LALIPARTIPFAWNL+
Sbjct: 1   MSTPTTVSWGTGLFSGFTRLCKGLAVVLVGSHLLIHFFPSAVNYLALIPARTIPFAWNLI 60

Query: 58  TAGYIEQTVHGVRPS------------------------FDV------------------ 75
           TAGYIEQTV+GV  S                        F V                  
Sbjct: 61  TAGYIEQTVYGVVVSTFSLLFFGKLLEPIWGSGEFCKFIFVVNFLTSVSVFITAIALYYI 120

Query: 76  ---KKFTYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTA 132
              + + YMPLSGF GV++GFLVG+KQI+PDQEL  +KIK KWLPS+ LLLSIA+ F+T 
Sbjct: 121 TRQENYLYMPLSGFHGVISGFLVGLKQIIPDQELPFIKIKTKWLPSITLLLSIAVCFWTL 180

Query: 133 ESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIF 192
           E+ +YLPT++ GTY+ WIYLRY Q+KPETK  GDPS+DFAFSSFFPE +RP IDPIASIF
Sbjct: 181 EATSYLPTIVSGTYISWIYLRYWQRKPETKHRGDPSEDFAFSSFFPELLRPFIDPIASIF 240

Query: 193 HRMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVE 252
           HRMLCG R++ S D   Y+LG   LPGSD +EASRRRERGARALEERLA E+L AA++  
Sbjct: 241 HRMLCG-RSDASNDGQDYSLGSEPLPGSDSVEASRRRERGARALEERLAAERLGAARTAG 299

Query: 253 ESKKDAAENV 262
           ES  D AENV
Sbjct: 300 ESHSDTAENV 309

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113005|ref|XP_002316359.1| hypothetical protein POPTRDRAFT_659857 [Populus trichocarpa] gi|222865399|gb|EEF02530.1| hypothetical protein POPTRDRAFT_659857 [Populus trichocarpa]

 Score =  352 bits (904), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 182/276 (65%), Positives = 205/276 (74%), Gaps = 48/276 (17%)

Query: 1   MSSPA--GGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLT 58
           MSSP   GG+ LFTGFTKLCKGLAVVLV GHI+VQ+ P++V+ LALIPARTIPFAWNLLT
Sbjct: 1   MSSPPILGGASLFTGFTKLCKGLAVVLVAGHIVVQIFPSAVNYLALIPARTIPFAWNLLT 60

Query: 59  AGYIEQTVHGV--------------RPSFDVKKFT------------------------- 79
           AGYIEQ+++GV               P +  K+F                          
Sbjct: 61  AGYIEQSIYGVVASTLCLLIMGKLLEPVWGSKEFLKFIFIVNFLTSVCVFITAISLYYIT 120

Query: 80  ------YMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAE 133
                 YMP+SGFQG+LAGFLVG KQI+PDQEL LL++KAKW PSLMLL++I ISFFTAE
Sbjct: 121 RQENYLYMPISGFQGILAGFLVGTKQIIPDQELSLLRLKAKWFPSLMLLIAIVISFFTAE 180

Query: 134 SAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFH 193
           SA YLPT+IFGTYM WIYLRY  +KPETKL GDPSDDFAFSSFFPEF+RPVIDPIASIFH
Sbjct: 181 SAKYLPTIIFGTYMSWIYLRYFHRKPETKLRGDPSDDFAFSSFFPEFLRPVIDPIASIFH 240

Query: 194 RMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRR 229
           RMLCG R ETS + HG+TLGGA LPGSDPIEASRRR
Sbjct: 241 RMLCG-RFETSTEAHGHTLGGAPLPGSDPIEASRRR 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097969|ref|XP_002311100.1| predicted protein [Populus trichocarpa] gi|222850920|gb|EEE88467.1| predicted protein [Populus trichocarpa]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 184/276 (66%), Positives = 205/276 (74%), Gaps = 48/276 (17%)

Query: 1   MSSPA--GGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLT 58
           MSSP   GG+ LFTGFTKLCKGLAVVLV  HILVQ+LP +V+ LALIPARTIPF WNL+T
Sbjct: 1   MSSPPILGGASLFTGFTKLCKGLAVVLVTCHILVQILPPAVNYLALIPARTIPFVWNLIT 60

Query: 59  AGYIEQTVHGV--------------RPSFDVKKFT------------------------- 79
           AGYIEQ+++GV               P +  K+F                          
Sbjct: 61  AGYIEQSIYGVVASTLCLLIMGKLLEPVWGSKEFLKFIFIVNFLISICVFITAISLYYIT 120

Query: 80  ------YMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAE 133
                 YMP+SGFQG+LAGFLVGIKQI+PDQEL LL+IKAKW PSLMLL++IAISFFTAE
Sbjct: 121 RQENYLYMPISGFQGILAGFLVGIKQIIPDQELSLLRIKAKWFPSLMLLIAIAISFFTAE 180

Query: 134 SAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFH 193
           SAAYLPTLIFGTYM WIYLRY Q+KPETKL GDPSDDFAFSSFFPE +RP+IDPIASIFH
Sbjct: 181 SAAYLPTLIFGTYMSWIYLRYFQRKPETKLRGDPSDDFAFSSFFPESLRPIIDPIASIFH 240

Query: 194 RMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRR 229
           RMLCG R ETS + HG TLG ASLPGSDPIEA+RRR
Sbjct: 241 RMLCG-RFETSTEAHGDTLGDASLPGSDPIEATRRR 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498564|ref|XP_003518120.1| PREDICTED: transmembrane protein 115-like [Glycine max]

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 183/309 (59%), Positives = 220/309 (71%), Gaps = 50/309 (16%)

Query: 1   MSSPA--GGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLT 58
           MS+PA  GG+ LF+GFT+LCKGLAVVLV GHI VQ +P++V+ LALIPARTIPFAWNL+T
Sbjct: 1   MSTPALSGGTGLFSGFTRLCKGLAVVLVCGHIAVQFIPSAVNYLALIPARTIPFAWNLIT 60

Query: 59  AGYIEQTVHGV--------------RPSFDVKKF-------------------------- 78
           AGY+EQ+++GV               P +  ++F                          
Sbjct: 61  AGYVEQSIYGVVVSTLSLLFIGKLLEPIWGSREFFKFIFVVNLLTSVCLFITAIALYYIT 120

Query: 79  -----TYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAE 133
                 YMPLSGF GV++GFLVGIKQI+PDQEL  +KIK KWLPS+ +LLSIAISF+T E
Sbjct: 121 RLETYLYMPLSGFHGVVSGFLVGIKQIIPDQELPFIKIKTKWLPSITVLLSIAISFWTLE 180

Query: 134 SAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFH 193
           + AYLPT+I GTY+ WIYLRY Q+KPETK  GD S+DFAFS+FFPEF+RPVIDPIASIFH
Sbjct: 181 ATAYLPTIISGTYISWIYLRYWQRKPETKHRGDLSEDFAFSTFFPEFLRPVIDPIASIFH 240

Query: 194 RMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEE 253
           RMLCG R + S D  G +L    LPGSD IEASRRRERGARALEERLA E+LA A+   E
Sbjct: 241 RMLCG-RYDASNDGQGNSLESEPLPGSDSIEASRRRERGARALEERLAAERLAVAR--RE 297

Query: 254 SKKDAAENV 262
            +++A ENV
Sbjct: 298 LQREAEENV 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829360|ref|XP_002882562.1| hypothetical protein ARALYDRAFT_896969 [Arabidopsis lyrata subsp. lyrata] gi|297328402|gb|EFH58821.1| hypothetical protein ARALYDRAFT_896969 [Arabidopsis lyrata subsp. lyrata]

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 190/307 (61%), Positives = 222/307 (72%), Gaps = 48/307 (15%)

Query: 1   MSSPAGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAG 60
           MSSP  G+ +FT FTKLCKGLA+VLV GH++VQ +PA+V  LALIPARTIPFAWNL+T+G
Sbjct: 1   MSSP--GTSMFTNFTKLCKGLALVLVVGHLVVQFIPATVPYLALIPARTIPFAWNLITSG 58

Query: 61  YIEQTVHGV--------------RPSFDVKKFT--------------------------- 79
           Y E +V+GV               P +  K+F                            
Sbjct: 59  YFELSVYGVVFSTVSLLFMGKFLEPVWGSKEFLKFIFVVNFLAYLCVFVTAIALYYITRL 118

Query: 80  ----YMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESA 135
               YMP +GF GVLAG LVGIKQI+PDQE+ LLKIKAKWLPS+ML+LSIA SFFT  SA
Sbjct: 119 EIYLYMPFAGFHGVLAGLLVGIKQIIPDQEILLLKIKAKWLPSIMLILSIASSFFTLNSA 178

Query: 136 AYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRM 195
           AYLPTLIFGTYMGW+YLRYLQ++PETKL GDPSDDFAFS+FFPEF+RPVIDPIA IFHRM
Sbjct: 179 AYLPTLIFGTYMGWLYLRYLQRRPETKLRGDPSDDFAFSTFFPEFLRPVIDPIALIFHRM 238

Query: 196 LCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESK 255
           LCGR   TS +DHGY+  GA LPGSD  EASRRRERGARALEERL TE+L  A++ +E +
Sbjct: 239 LCGRSNATS-EDHGYSTSGAPLPGSDSAEASRRRERGARALEERLGTERLVPARNKDELQ 297

Query: 256 KDAAENV 262
            DA ++V
Sbjct: 298 SDALDSV 304

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452106|ref|XP_004143801.1| PREDICTED: transmembrane protein 115-like [Cucumis sativus] gi|449529888|ref|XP_004171930.1| PREDICTED: transmembrane protein 115-like [Cucumis sativus]

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 193/309 (62%), Positives = 227/309 (73%), Gaps = 48/309 (15%)

Query: 1   MSSPA--GGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLT 58
           MS+P+  GGS  FTGFTKLCKG+AVVL+GGHILVQL P  V+ LALIPARTIPFAWNLLT
Sbjct: 1   MSTPSVPGGSGSFTGFTKLCKGIAVVLIGGHILVQLFPVVVNYLALIPARTIPFAWNLLT 60

Query: 59  AGYIEQTVHGV--------------RPSFDVKKFT------------------------- 79
           AGYIEQ+++GV               P +  ++F                          
Sbjct: 61  AGYIEQSIYGVVVSTVGLLFVGKLLEPIWGSREFLKFIFVVNFLTSLCVFITAIALYYIT 120

Query: 80  ------YMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAE 133
                 Y+P+SGF G+LAGFLVGIKQ++PDQEL +LK+KAKWLPSL +LLSIA+SF+T  
Sbjct: 121 QEESYLYLPVSGFYGILAGFLVGIKQMIPDQELPVLKLKAKWLPSLAVLLSIAVSFWTTG 180

Query: 134 SAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFH 193
           +A YLPT+IFGTY+ WIYLRY Q+KPE KL GDPSDDFAFS+FFPE +RPVIDPIASIFH
Sbjct: 181 AATYLPTIIFGTYISWIYLRYWQRKPEAKLKGDPSDDFAFSTFFPELLRPVIDPIASIFH 240

Query: 194 RMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEE 253
           RMLCG R+E+  +   YT  GA LPGSDP+EASRRRERGARALEERLA E+LAAA+S +E
Sbjct: 241 RMLCG-RSESPDNAEDYTAAGAPLPGSDPVEASRRRERGARALEERLAAERLAAARSAQE 299

Query: 254 SKKDAAENV 262
           S KDA ENV
Sbjct: 300 SGKDATENV 308

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398108|ref|NP_566326.1| rhomboid protein-like protein [Arabidopsis thaliana] gi|21537325|gb|AAM61666.1| unknown [Arabidopsis thaliana] gi|25083369|gb|AAN72066.1| expressed protein [Arabidopsis thaliana] gi|31711794|gb|AAP68253.1| At3g07950 [Arabidopsis thaliana] gi|332641103|gb|AEE74624.1| rhomboid protein-like protein [Arabidopsis thaliana]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/307 (60%), Positives = 219/307 (71%), Gaps = 48/307 (15%)

Query: 1   MSSPAGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAG 60
           MSSP  G+ +FT FTKLCKGLA+VLV GH++VQ +PA+V  LALIPARTIPFAWNL+T+G
Sbjct: 1   MSSP--GTSMFTNFTKLCKGLALVLVVGHLVVQFIPATVPYLALIPARTIPFAWNLITSG 58

Query: 61  YIEQTVHGV--------------RPSFDVKKFT--------------------------- 79
           Y E +V+GV               P +   +F                            
Sbjct: 59  YFELSVYGVVFSTVSLLFMGKFLEPVWGSTEFLKFIFVVNFLTYLCVFVTAIALYYITRL 118

Query: 80  ----YMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESA 135
               YMP +GF GVLAG LVGIKQI+PDQE+ LLKIKAKWLPS+ML+LSIA SFFT +SA
Sbjct: 119 EVYLYMPFAGFHGVLAGLLVGIKQIIPDQEILLLKIKAKWLPSIMLILSIASSFFTLDSA 178

Query: 136 AYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRM 195
           AYLPTLIFGTYMGW+YLRYLQ++PETKL GDPSDDFAFS+FFPE +RPVIDPIA IFHRM
Sbjct: 179 AYLPTLIFGTYMGWLYLRYLQRRPETKLRGDPSDDFAFSTFFPELLRPVIDPIALIFHRM 238

Query: 196 LCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESK 255
           LCGR   TS +DH Y+  GA LPGSD  EASRRRERGARALEERL TE+L  A++ +E +
Sbjct: 239 LCGRSNATS-EDHDYSTSGAPLPGSDSAEASRRRERGARALEERLGTERLVPARNKDELQ 297

Query: 256 KDAAENV 262
            D  +NV
Sbjct: 298 SDGLDNV 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2077377	304	AT3G07950 "AT3G07950" [Arabido	0.702	0.605	0.556	5.9e-74
DICTYBASE|DDB_G0278061	288	tmem115 "transmembrane protein	0.423	0.385	0.313	5.5e-13
UNIPROTKB|H9L111	258	H9L111 "Uncharacterized protei	0.564	0.573	0.280	2.6e-08
ASPGD|ASPL0000017304	405	AN3692 [Emericella nidulans (t	0.290	0.187	0.313	3.8e-06
MGI|MGI:1930765	350	Tmem115 "transmembrane protein	0.732	0.548	0.258	2.1e-05
RGD|1310540	350	Tmem115 "transmembrane protein	0.732	0.548	0.258	2.1e-05
UNIPROTKB|Q12893	351	TMEM115 "Transmembrane protein	0.564	0.421	0.254	2.1e-05
UNIPROTKB|A4FUB8	351	TMEM115 "Transmembrane protein	0.732	0.547	0.258	4.7e-05
UNIPROTKB|E2QWQ9	351	TMEM115 "Uncharacterized prote	0.732	0.547	0.258	4.7e-05
UNIPROTKB|F1SJ20	351	TMEM115 "Uncharacterized prote	0.732	0.547	0.258	4.7e-05

TAIR|locus:2077377 AT3G07950 "AT3G07950" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
 Identities = 103/185 (55%), Positives = 121/185 (65%)

Query:    78 FTYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAY 137
             + YMP +GF GVLAG LVGIKQI+PDQE+ LLKIKAKWLPS+ML+LSIA SFFT +SAAY
Sbjct:   121 YLYMPFAGFHGVLAGLLVGIKQIIPDQEILLLKIKAKWLPSIMLILSIASSFFTLDSAAY 180

Query:   138 LPTLIFGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRMLC 197
             LPTLIFGTYMGW+YLRYLQ++PETKL G               +RPVIDPIA IFHRMLC
Sbjct:   181 LPTLIFGTYMGWLYLRYLQRRPETKLRGDPSDDFAFSTFFPELLRPVIDPIALIFHRMLC 240

Query:   198 GRRTETSGDDHGYTLGGASLPGSDPIXXXXXXXXXXXXXXXXXXXXXXXXXQSVEESKKD 257
             GR   TS +DH Y+  GA LPGSD                           ++ +E + D
Sbjct:   241 GRSNATS-EDHDYSTSGAPLPGSDSAEASRRRERGARALEERLGTERLVPARNKDELQSD 299

Query:   258 AAENV 262
               +NV
Sbjct:   300 GLDNV 304

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

DICTYBASE|DDB_G0278061 tmem115 "transmembrane protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 173 (66.0 bits), Expect = 5.5e-13, P = 5.5e-13
 Identities = 36/115 (31%), Positives = 61/115 (53%)

Query:    85 GFQGVLAGFLVGIKQIVPDQEL--YLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLI 142
             GF GV+A F V +KQ++ +QE   +L+KI+AKW+P +++L  + +  F          +I
Sbjct:    91 GFSGVIAAFSVALKQLITEQEFNFFLIKIRAKWIPFILILFRVIVFSFIGFQDRSFTLVI 150

Query:   143 FGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRMLC 197
             +G ++ WIYLR+ Q K   K  G               ++  I  I++I  ++LC
Sbjct:   151 YGVFIAWIYLRFYQVKSGVK--GDLNESFSFYTFFPDPVQAPIKVISNIVFKILC 203

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H9L111 H9L111 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 133 (51.9 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
 Identities = 44/157 (28%), Positives = 71/157 (45%)

Query:    72 SFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQE-LYLLKIKAKWLPSLMLLLSIAISFF 130
             +F V     + + G  G LAG LV +KQ + D   L + +++ K +P L+LLL  A+   
Sbjct:    98 TFHVAYLFDVHIHGGLGFLAGVLVALKQTMGDSTVLRVPQVRMKAVPVLLLLLLAALRLA 157

Query:   131 TAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIAS 190
             T   +  L +  FG    W+YLR+ Q+    +  G               ++P +   A+
Sbjct:   158 TLIESPALASYGFGLLSSWVYLRFYQRHSRGR--GDMSDHFAFATFFPEILQPAVGLAAN 215

Query:   191 IFHRML-----CGRRTETSGDDHGYTLGGASLPGSDP 222
             + H +L     C R+T    D    +    SLPG+DP
Sbjct:   216 LVHTLLVKVRLC-RKTVKRYDVGAPSSITISLPGTDP 251

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

ASPGD|ASPL0000017304 AN3692 [Emericella nidulans (taxid:162425)]

 Score = 101 (40.6 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
 Identities = 26/83 (31%), Positives = 42/83 (50%)

Query:    83 LSGFQGVLAGFLVGIKQIVPDQELY----LLKIKAKWLPSLMLLLSIAISFFTAESAAYL 138
             + G   + A FLV  KQ+VP+  +     L+K++ K  P++ LLL+           A  
Sbjct:   174 ICGGISIQASFLVAFKQLVPEHTVTIFKGLVKMRVKHFPAVFLLLNTLSGIIVGTRVA-- 231

Query:   139 PTLI-FGTYMGWIYLRYLQKKPE 160
              TL  FG    W YLR+ +++P+
Sbjct:   232 ATLAWFGLITSWTYLRFYKRQPD 254

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030137 "COPI-coated vesicle" evidence=IEA

MGI|MGI:1930765 Tmem115 "transmembrane protein 115" [Mus musculus (taxid:10090)]

 Score = 123 (48.4 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 54/209 (25%), Positives = 92/209 (44%)

Query:    21 LAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTA-GYIEQTVHGVRPSFDVKKFT 79
             LA V+V G +L  L  A   +  LI    +  +  LL A  Y+   +     SF++    
Sbjct:    79 LATVVVAGRLLEPLWGA---LELLIFFSVVNVSVGLLGALAYLLTYM----ASFNLVYLF 131

Query:    80 YMPLSGFQGVLAGFLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYL 138
              + + G  G L G LV +KQ + D   L + +++   +P L+L L + +   T   +  L
Sbjct:   132 TIRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVVPMLLLALLLLLRLATLLQSPAL 191

Query:   139 PTLIFGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-- 196
              +  FG    W+YLR+ Q+    +  G               ++PV+  +A++ H +L  
Sbjct:   192 ASYGFGLLSSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVK 249

Query:   197 ---CGRRTETSGDDHGYTLGGASLPGSDP 222
                C ++T    D    +    SLPG+DP
Sbjct:   250 VKIC-QKTVKRYDVGAPSSITISLPGTDP 277

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1310540 Tmem115 "transmembrane protein 115" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 54/209 (25%), Positives = 92/209 (44%)

Query:    21 LAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTA-GYIEQTVHGVRPSFDVKKFT 79
             LA V+V G +L  L  A   +  LI    +  +  LL A  Y+   +     SF++    
Sbjct:    79 LATVVVAGRLLEPLWGA---LELLIFFSVVNVSVGLLGAFAYLLTYM----ASFNLVYLF 131

Query:    80 YMPLSGFQGVLAGFLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYL 138
              + + G  G L G LV +KQ + D   L + +++   +P L+L L + +   T   +  L
Sbjct:   132 TIRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVVPMLLLALLLLLRLATLLQSPAL 191

Query:   139 PTLIFGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-- 196
              +  FG    W+YLR+ Q+    +  G               ++PV+  +A++ H +L  
Sbjct:   192 ASYGFGLLSSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVK 249

Query:   197 ---CGRRTETSGDDHGYTLGGASLPGSDP 222
                C ++T    D    +    SLPG+DP
Sbjct:   250 VKIC-QKTVKRYDVGAPSSITISLPGTDP 277

GO:0001302 "replicative cell aging" evidence=IEP

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q12893 TMEM115 "Transmembrane protein 115" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 40/157 (25%), Positives = 71/157 (45%)

Query:    72 SFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFF 130
             SF++     + + G  G L G LV +KQ + D   L + +++   +P L+L L + +   
Sbjct:   124 SFNLVYLFTVRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVMPMLLLALLLLLRLA 183

Query:   131 TAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIAS 190
             T   +  L +  FG    W+YLR+ Q+    +  G               ++PV+  +A+
Sbjct:   184 TLLQSPALASYGFGLLSSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLAN 241

Query:   191 IFHRML-----CGRRTETSGDDHGYTLGGASLPGSDP 222
             + H +L     C ++T    D    +    SLPG+DP
Sbjct:   242 LVHSLLVKVKIC-QKTVKRYDVGAPSSITISLPGTDP 277

GO:0016021 "integral to membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008285 "negative regulation of cell proliferation" evidence=NAS

UNIPROTKB|A4FUB8 TMEM115 "Transmembrane protein 115" [Bos taurus (taxid:9913)]

 Score = 120 (47.3 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 54/209 (25%), Positives = 92/209 (44%)

Query:    21 LAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTA-GYIEQTVHGVRPSFDVKKFT 79
             LA V+V G +L  L  A   +  LI    +  +  LL A  Y+   +     SF++    
Sbjct:    79 LATVVVAGRLLEPLWGA---LELLIFFSVVNVSVGLLGAFAYLLTYM----ASFNLVYLF 131

Query:    80 YMPLSGFQGVLAGFLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYL 138
              + + G  G L G LV +KQ + D   L + +++   +P L+L L + +   T   +  L
Sbjct:   132 TVRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVVPMLLLGLLLLLRLATLLQSPAL 191

Query:   139 PTLIFGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-- 196
              +  FG    W+YLR+ Q+    +  G               ++PV+  +A++ H +L  
Sbjct:   192 ASYGFGLISSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVK 249

Query:   197 ---CGRRTETSGDDHGYTLGGASLPGSDP 222
                C ++T    D    +    SLPG+DP
Sbjct:   250 VKIC-QKTVKRYDVGAPSSITISLPGTDP 277

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QWQ9 TMEM115 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 120 (47.3 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 54/209 (25%), Positives = 92/209 (44%)

Query:    21 LAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTA-GYIEQTVHGVRPSFDVKKFT 79
             LA V+V G +L  L  A   +  LI    +  +  LL A  Y+   +     SF++    
Sbjct:    79 LATVVVAGRLLEPLWGA---LELLIFFSVVNVSVGLLGAFAYLLTYM----ASFNLVYLF 131

Query:    80 YMPLSGFQGVLAGFLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYL 138
              + + G  G L G LV +KQ + D   L + +++   +P L+L L + +   T   +  L
Sbjct:   132 TIRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVVPMLLLGLLLLLRLATLLQSPAL 191

Query:   139 PTLIFGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-- 196
              +  FG    W+YLR+ Q+    +  G               ++PV+  +A++ H +L  
Sbjct:   192 ASYGFGLLSSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVK 249

Query:   197 ---CGRRTETSGDDHGYTLGGASLPGSDP 222
                C ++T    D    +    SLPG+DP
Sbjct:   250 VKIC-QKTVKRYDVGAPSSITISLPGTDP 277

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SJ20 TMEM115 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 120 (47.3 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 54/209 (25%), Positives = 92/209 (44%)

Query:    21 LAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTA-GYIEQTVHGVRPSFDVKKFT 79
             LA V+V G +L  L  A   +  LI    +  +  LL A  Y+   +     SF++    
Sbjct:    79 LATVVVAGRLLEPLWGA---LELLIFFSVVNVSVGLLGAFAYLLTYM----ASFNLVYLF 131

Query:    80 YMPLSGFQGVLAGFLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYL 138
              + + G  G L G LV +KQ + D   L + +++   +P L+L L + +   T   +  L
Sbjct:   132 TIRIHGSLGFLGGVLVALKQTMGDCVVLRVPQVRVSVVPMLLLGLLLLLRLATLLQSPAL 191

Query:   139 PTLIFGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-- 196
              +  FG    W+YLR+ Q+    +  G               ++PV+  +A++ H +L  
Sbjct:   192 ASYGFGLLSSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVK 249

Query:   197 ---CGRRTETSGDDHGYTLGGASLPGSDP 222
                C ++T    D    +    SLPG+DP
Sbjct:   250 VKIC-QKTVKRYDVGAPSSITISLPGTDP 277

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
pfam08551	99	pfam08551, DUF1751, Eukaryotic integral membrane p	1e-05

>gnl|CDD|219898 pfam08551, DUF1751, Eukaryotic integral membrane protein (DUF1751)

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 45/99 (45%)

Query: 46 PARTIPFAWNLLTAGYIEQTVHGVRPSF-----------------DVKKFT--------- 79
          P  T P+ W LLT+G++EQ V G   S                  ++ KF          
Sbjct: 1  PGYTFPYPWTLLTSGFVEQNVWGFLVSLVTLLLGGKYLERLWGSKELLKFILVVNVITNL 60

Query: 80 -------------------YMPLSGFQGVLAGFLVGIKQ 99
                              +P+SG  G+LAGFLV  KQ
Sbjct: 61 LVFLYYLLLYMITRSERYLDVPISGGYGILAGFLVAFKQ 99

This domain is found in eukaryotic integral membrane proteins. YOL107W, a Saccharomyces cerervisiae protein, has been shown to localise COP II vesicles. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
KOG2890	326	consensus Predicted membrane protein [Function unk	100.0
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	99.49
KOG2632	258	consensus Rhomboid family proteins [Function unkno	96.65
COG0705	228	Membrane associated serine protease [Amino acid tr	96.11
PRK10907	276	intramembrane serine protease GlpG; Provisional	95.59
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	95.22
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	94.7
KOG0858	239	consensus Predicted membrane protein [Function unk	93.58
PTZ00101	278	rhomboid-1 protease; Provisional	92.78

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=2.8e-62  Score=445.83  Aligned_cols=245  Identities=36%  Similarity=0.577  Sum_probs=217.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhh----hhhcceeEeecCccccchhHHHHHHhhccccceEEeec--------------
Q 024772           12 TGFTKLCKGLAVVLVGGHILVQLL----PASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVRPSF--------------   73 (262)
Q Consensus        12 ~~~tr~~k~i~~vl~~~~~Ls~~~----~~~~~~L~liP~~~~~~pWtl~T~~fvE~~i~~~i~s~--------------   73 (262)
                      .......+.||++..++|.+|+.-    ..+.|+++++|+++++||||++|++|+|.|+|++++|+              
T Consensus        22 ~n~~vvvs~ic~~tlf~yi~sf~~~t~~l~~~p~y~lvp~~~~~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~W  101 (326)
T KOG2890|consen   22 LNLEVVVSAICVLTLFGYILSFGNFTILLATLPGYQLVPNALFFFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNW  101 (326)
T ss_pred             hhchhHHHHHHHHHHHHHHHHHHHhHHHHHhccccccCCcchhhhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCC
Confidence            445567888998999999999762    34689999999999999999999999999999999888              


Q ss_pred             -------------------------------ccceeeeeeccchHHHHHHHHHHhhhhcCCceeEE---eccccchhHHH
Q 024772           74 -------------------------------DVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQELYL---LKIKAKWLPSL  119 (262)
Q Consensus        74 -------------------------------g~~~~l~~~i~G~~~~~~g~lVA~kQl~Pd~~v~~---~~ir~K~lP~i  119 (262)
                                                     .|..|||.+++|+.|+++|++||+||++||+.|..   .++.+||+|++
T Consensus       102 g~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~r~~~~~lP~~  181 (326)
T KOG2890|consen  102 GSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSGRFLYAHLPLL  181 (326)
T ss_pred             CCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccchhhhhhhCCHH
Confidence                                           38889999999999999999999999999999886   68888999999


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCcccCCCCCCccccccCCcccccccchhhhhhhhheecc
Q 024772          120 MLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGR  199 (262)
Q Consensus       120 ~l~~~~~~~~~~~~~~~~~~~~~~G~~~sW~YLRF~Q~~p~~~~rGD~Sd~Fafa~FFP~~l~p~i~~is~~~~~l~c~~  199 (262)
                      .+.++++++++.+....+++++++|+++||+||||||+||++..|||+||+|+|++|||+.+||++++++|.+|+++|++
T Consensus       182 ~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~~~~~rGD~Sd~F~fvsFFP~v~qp~~~li~n~~~~~l~~~  261 (326)
T KOG2890|consen  182 VLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHPTDELRGDCSDSFTFVSFFPEVLQPFFHLIANTIYRILVRM  261 (326)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCCcccccCCchhceehhhhchhhhhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999988889999999999999999999999999999999999665


Q ss_pred             cccc--cCC-CCCCcccCCCCCCCCchhhhHHHHHHHHHHHHHHhccccccccccccccc
Q 024772          200 RTET--SGD-DHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKK  256 (262)
Q Consensus       200 ~~~~--~~~-~~~~~~~~~~lpg~~~~eAERRR~~ALkaL~eRL~~~~~~~~~~~~~~~~  256 (262)
                      .+.+  ..| ..+.+..++++||.|++|||||||+|||||||||++...+++++.+|.++
T Consensus       262 ~~~~~~~~d~~~~~~s~~~~lpg~d~~d~eRRRQ~alkaL~eRl~~~~~~p~~~~~~~~~  321 (326)
T KOG2890|consen  262 GVVKKPHVDIDLDSGSVGANLPGLDPKDAERRRQLALKALEERLKKTRTAPVASYDEWDD  321 (326)
T ss_pred             ccccccceecccCcccccccCCCCChhHHHHHHHHHHHHHHHHhcCcccCccccccchhh
Confidence            5321  112 14455666899999999999999999999999999999887776666553

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=99.49  E-value=2.4e-15  Score=118.84  Aligned_cols=54  Identities=46%  Similarity=0.987  Sum_probs=51.7

Q ss_pred             cCccccchhHHHHHHhhccccceEEeec---------------------------------------------ccceeee
Q 024772           46 PARTIPFAWNLLTAGYIEQTVHGVRPSF---------------------------------------------DVKKFTY   80 (262)
Q Consensus        46 P~~~~~~pWtl~T~~fvE~~i~~~i~s~---------------------------------------------g~~~~l~   80 (262)
                      ||++++||||++|++|+|+|++++++++                                             +|+.+++
T Consensus         1 P~~~~~~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~   80 (99)
T PF08551_consen    1 PGRSFPYPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLF   80 (99)
T ss_pred             CCceeeehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeE
Confidence            8999999999999999999999999888                                             5888899


Q ss_pred             eeccchHHHHHHHHHHhhh
Q 024772           81 MPLSGFQGVLAGFLVGIKQ   99 (262)
Q Consensus        81 ~~i~G~~~~~~g~lVA~kQ   99 (262)
                      .++||++|+++|++||+||
T Consensus        81 ~~i~G~~~~~~g~lVa~kQ   99 (99)
T PF08551_consen   81 VPISGFMGVLAGFLVAFKQ   99 (99)
T ss_pred             EEecCcHHhHhheEEEEeC
Confidence            9999999999999999999

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=96.65  E-value=0.0031  Score=57.83  Aligned_cols=128  Identities=18%  Similarity=0.234  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcceeEeecCcccc-chhHHHHHHhhccccceEEeec--------------c----------
Q 024772           20 GLAVVLVGGHILVQLLPASVSVLALIPARTIP-FAWNLLTAGYIEQTVHGVRPSF--------------D----------   74 (262)
Q Consensus        20 ~i~~vl~~~~~Ls~~~~~~~~~L~liP~~~~~-~pWtl~T~~fvE~~i~~~i~s~--------------g----------   74 (262)
                      .+.+...+.|+++. .+.....+.+-+...+. ..|+++|+.++|.|..++++|+              |          
T Consensus        20 ~~~~~~~~i~lv~~-~~~i~~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~   98 (258)
T KOG2632|consen   20 IVVVLAILIYLVSF-FPGIVEVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTV   98 (258)
T ss_pred             HHHHHHHHHHHHhc-cchhhhHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHH
Confidence            33444566677774 45555566666666666 6999999999999999999988              1          


Q ss_pred             -------------------cceeeeeeccchHHHHHHHHHHhhhhcCCceeEE---eccccchhHHHHHHHHHHHHHHhh
Q 024772           75 -------------------VKKFTYMPLSGFQGVLAGFLVGIKQIVPDQELYL---LKIKAKWLPSLMLLLSIAISFFTA  132 (262)
Q Consensus        75 -------------------~~~~l~~~i~G~~~~~~g~lVA~kQl~Pd~~v~~---~~ir~K~lP~i~l~~~~~~~~~~~  132 (262)
                                         ++.+.-...+|+.+++.+++++..-..|+....+   .++..|+.|.+++....+   +..
T Consensus        99 llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~---lvp  175 (258)
T KOG2632|consen   99 LLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQI---LVP  175 (258)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHH---Hcc
Confidence                               1112223578999999999999888888888443   788999999998744322   111


Q ss_pred             hhhhhHHHHHHHHHHHHHHHh
Q 024772          133 ESAAYLPTLIFGTYMGWIYLR  153 (262)
Q Consensus       133 ~~~~~~~~~~~G~~~sW~YLR  153 (262)
                       ..+++ --..|++++..|.-
T Consensus       176 -~aSFl-ghl~GllvG~ay~~  194 (258)
T KOG2632|consen  176 -QASFL-GHLCGLLVGYAYAF  194 (258)
T ss_pred             -CchHH-HHHHHHHHHHHHHH
Confidence             22222 34567777777765

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=96.11  E-value=0.022  Score=50.34  Aligned_cols=115  Identities=19%  Similarity=0.321  Sum_probs=74.0

Q ss_pred             eEeecCcccc-----chhHHHHHHhhccccceEEeec--------------ccce----------------eee-----e
Q 024772           42 LALIPARTIP-----FAWNLLTAGYIEQTVHGVRPSF--------------DVKK----------------FTY-----M   81 (262)
Q Consensus        42 L~liP~~~~~-----~pWtl~T~~fvE~~i~~~i~s~--------------g~~~----------------~l~-----~   81 (262)
                      ..+.|.....     .+|+++|+.|+|.++++.+.|.              |...                +++     .
T Consensus        52 ~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~  131 (228)
T COG0705          52 FGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGA  131 (228)
T ss_pred             HhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccC
Confidence            5666655533     5899999999999999999888              2111                111     2


Q ss_pred             eccchHHHHHHHHHHhhhhcCCceeEEec--cccchhHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHhhh
Q 024772           82 PLSGFQGVLAGFLVGIKQIVPDQELYLLK--IKAKWLPSLMLLLSIAISFFTAES----AAYLPTLIFGTYMGWIYLRYL  155 (262)
Q Consensus        82 ~i~G~~~~~~g~lVA~kQl~Pd~~v~~~~--ir~K~lP~i~l~~~~~~~~~~~~~----~~~~~~~~~G~~~sW~YLRF~  155 (262)
                      +..|.+|.+.|++-|+-++.|...+....  +....+  +++.+..+.+++....    .....--+.|++.++.|..++
T Consensus       132 ~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~  209 (228)
T COG0705         132 PSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPAL--ILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALL  209 (228)
T ss_pred             cccchhHHHHHHHHHHHHHccccchhhhhccCchhHH--HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            56699999999999999999997776522  222111  1222233333332221    122233668888888888777


Q ss_pred             ccC
Q 024772          156 QKK  158 (262)
Q Consensus       156 Q~~  158 (262)
                      .+.
T Consensus       210 ~~~  212 (228)
T COG0705         210 SRK  212 (228)
T ss_pred             hhh
Confidence            764

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=95.59  E-value=0.032  Score=51.81  Aligned_cols=59  Identities=12%  Similarity=0.002  Sum_probs=35.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhcceeEeecCcccc-chhHHHHHHhhccccceEEeec
Q 024772           14 FTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIP-FAWNLLTAGYIEQTVHGVRPSF   73 (262)
Q Consensus        14 ~tr~~k~i~~vl~~~~~Ls~~~~~~~~~L~liP~~~~~-~pWtl~T~~fvE~~i~~~i~s~   73 (262)
                      +|-.+..+|++++++..+.. ......++......... .+|+++|+.|+|.++.++++|+
T Consensus        96 ~T~~li~i~i~vf~l~~~~~-~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNm  155 (276)
T PRK10907         96 LTLGVMIACVVVFILMQILG-DQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNL  155 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-cHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHH
Confidence            55556666666544433321 12233333321111112 6899999999999999999998

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.22  E-value=0.0016  Score=52.75  Aligned_cols=69  Identities=17%  Similarity=0.236  Sum_probs=44.0

Q ss_pred             chhHHHHHHhhccccceEEeec--------------c---------------ccee-e---ee-eccchHHHHHHHHHHh
Q 024772           52 FAWNLLTAGYIEQTVHGVRPSF--------------D---------------VKKF-T---YM-PLSGFQGVLAGFLVGI   97 (262)
Q Consensus        52 ~pWtl~T~~fvE~~i~~~i~s~--------------g---------------~~~~-l---~~-~i~G~~~~~~g~lVA~   97 (262)
                      ..|+++|+.|++.|+++++.|+              |               +-.+ +   .. +..|.+|.+.|++.+.
T Consensus         5 ~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~~~~   84 (145)
T PF01694_consen    5 QWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLLGAF   84 (145)
T ss_dssp             -TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHHHHH
T ss_pred             cchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHHHHH
Confidence            5899999999999999999988              1               1000 0   01 6789999999999999


Q ss_pred             hhhcCCceeEE-eccccchhHHHH
Q 024772           98 KQIVPDQELYL-LKIKAKWLPSLM  120 (262)
Q Consensus        98 kQl~Pd~~v~~-~~ir~K~lP~i~  120 (262)
                      -...|+..... .+.+...++.++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~  108 (145)
T PF01694_consen   85 LFLYPQNKKRLRFIYLALVVPIIV  108 (145)
T ss_dssp             HHHHHCCCCCS---HCCCCCCCCC
T ss_pred             HHHHhhccchhhcchHHHHHHHHH
Confidence            99988886544 233344444433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=94.70  E-value=0.03  Score=49.03  Aligned_cols=133  Identities=17%  Similarity=0.181  Sum_probs=81.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhcceeEeecCcccc--chhHHHHHHhh-ccccceEEeec----------------c
Q 024772           14 FTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIP--FAWNLLTAGYI-EQTVHGVRPSF----------------D   74 (262)
Q Consensus        14 ~tr~~k~i~~vl~~~~~Ls~~~~~~~~~L~liP~~~~~--~pWtl~T~~fv-E~~i~~~i~s~----------------g   74 (262)
                      +||...+.++++.++..+...   -...+.+.|...+.  -+|.++|+.|+ ...-++.++++                +
T Consensus         4 VTR~~~~~~~~~s~l~~~~~~---~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~   80 (197)
T PF04511_consen    4 VTRYWLISTVALSLLVSFGII---SPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQG   80 (197)
T ss_pred             hHHHHHHHHHHHHHHHHCCCC---CHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCC
Confidence            455555544444444333221   12245678877664  79999999887 33334445444                1


Q ss_pred             c-ceeeee------------ecc---------chHHHHHHHHHHhhhhcCCceeEE---eccccchhHHHHHHHHHHHHH
Q 024772           75 V-KKFTYM------------PLS---------GFQGVLAGFLVGIKQIVPDQELYL---LKIKAKWLPSLMLLLSIAISF  129 (262)
Q Consensus        75 ~-~~~l~~------------~i~---------G~~~~~~g~lVA~kQl~Pd~~v~~---~~ir~K~lP~i~l~~~~~~~~  129 (262)
                      + .+|++.            .+.         -..++...++=.+.|..|+.++.+   .++|.||+|.+.++++.++. 
T Consensus        81 ~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~~~~~~l~~-  159 (197)
T PF04511_consen   81 RSADYLWFLLFGASLILILSLLIGPYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVLLAFSLLFG-  159 (197)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHHHHHHHHhC-
Confidence            1 234431            111         123455566667889999999986   69999999998876665533 


Q ss_pred             HhhhhhhhHHHHHHHHHHHHHHHhhhc
Q 024772          130 FTAESAAYLPTLIFGTYMGWIYLRYLQ  156 (262)
Q Consensus       130 ~~~~~~~~~~~~~~G~~~sW~YLRF~Q  156 (262)
                         +. +.. ..+.|++++-+|. |++
T Consensus       160 ---~~-~~~-~~l~Gi~~Ghly~-fl~  180 (197)
T PF04511_consen  160 ---GS-SPI-PDLLGILVGHLYY-FLK  180 (197)
T ss_pred             ---CC-cHH-HHHHHHHHHHHHH-HHH
Confidence               21 222 4678999999988 554

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=93.58  E-value=0.069  Score=48.61  Aligned_cols=132  Identities=22%  Similarity=0.243  Sum_probs=85.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhhcceeEeecCcccc--chhHHHHHHhhccc-cceEEeec----------------
Q 024772           13 GFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIP--FAWNLLTAGYIEQT-VHGVRPSF----------------   73 (262)
Q Consensus        13 ~~tr~~k~i~~vl~~~~~Ls~~~~~~~~~L~liP~~~~~--~pWtl~T~~fvE~~-i~~~i~s~----------------   73 (262)
                      .+||.-...|+++.+..-|....|   -+|-+.|...+.  -.|.++|+.++=.. -+..++++                
T Consensus        14 pVTR~~~~~~v~tt~~~~l~lIsP---~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~   90 (239)
T KOG0858|consen   14 PVTRYYTTACVVTTLLVRLDLISP---FQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFR   90 (239)
T ss_pred             hHHHHHHHHHHHHHHHHhhcccCc---hheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            467777777777666555543322   356677776666  58999999988744 34445555                


Q ss_pred             c-cceeeee-ecc-------ch--------HHHHHHHHHHhhhhcCCceeEE---eccccchhHHHHHHHHHHHHHHhhh
Q 024772           74 D-VKKFTYM-PLS-------GF--------QGVLAGFLVGIKQIVPDQELYL---LKIKAKWLPSLMLLLSIAISFFTAE  133 (262)
Q Consensus        74 g-~~~~l~~-~i~-------G~--------~~~~~g~lVA~kQl~Pd~~v~~---~~ir~K~lP~i~l~~~~~~~~~~~~  133 (262)
                      | ..+|++. -++       |.        .+..+.++=.+.|.-|+..+.+   .+++.+|+|-+.+.++.+..    .
T Consensus        91 ~rtadf~~mllf~~~l~~~~~~~~~~~fLg~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~YlPwvll~fs~l~g----~  166 (239)
T KOG0858|consen   91 GRTADFLYMLLFGAVLLTLTGLFVYIVFLGQSLVFMLVYVWSKRNPDVIVSFFGLITFKAPYLPWVLLGFSFLFG----G  166 (239)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEecCccccchHHHHHHHHHhC----C
Confidence            1 3445542 111       21        2333444555678889999987   79999999999988777643    2


Q ss_pred             hhhhHHHHHHHHHHHHHHHhh
Q 024772          134 SAAYLPTLIFGTYMGWIYLRY  154 (262)
Q Consensus       134 ~~~~~~~~~~G~~~sW~YLRF  154 (262)
                      +.   ....+|+.++-+|-=+
T Consensus       167 ~~---~~dllGi~~GHiy~fl  184 (239)
T KOG0858|consen  167 SI---LVDLLGIIVGHIYYFL  184 (239)
T ss_pred             ch---HHHHHhhhhheeEEEE
Confidence            22   2367899999887543

>PTZ00101 rhomboid-1 protease; Provisional

Probab=92.78  E-value=0.26  Score=45.92  Aligned_cols=59  Identities=10%  Similarity=0.151  Sum_probs=37.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhh-------hh--hccee-EeecCcccc-chhHHHHHHhhccccceEEeec
Q 024772           15 TKLCKGLAVVLVGGHILVQLL-------PA--SVSVL-ALIPARTIP-FAWNLLTAGYIEQTVHGVRPSF   73 (262)
Q Consensus        15 tr~~k~i~~vl~~~~~Ls~~~-------~~--~~~~L-~liP~~~~~-~pWtl~T~~fvE~~i~~~i~s~   73 (262)
                      ...++.+.++.++.|+++...       |+  ....+ ++.|..... .+|.++|+.|++.+++++++|+
T Consensus        53 ~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm  122 (278)
T PTZ00101         53 KSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNV  122 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHH
Confidence            344555555666666665442       11  22222 334443333 6999999999999999999888

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	97.04
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	96.62
1g70_B	26	RSG-1.2 peptide; peptide-RNA complex, non-canonica	90.32

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=97.04  E-value=0.0011  Score=55.81  Aligned_cols=93  Identities=13%  Similarity=0.092  Sum_probs=60.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhhcceeEeecCcccc-chhHHHHHHhhccccceEEeec--------------c---
Q 024772           13 GFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIP-FAWNLLTAGYIEQTVHGVRPSF--------------D---   74 (262)
Q Consensus        13 ~~tr~~k~i~~vl~~~~~Ls~~~~~~~~~L~liP~~~~~-~pWtl~T~~fvE~~i~~~i~s~--------------g---   74 (262)
                      .+|+.+..+|+++++...+.- .+....++++.|..... .+|+++|+.|+|.+++++++|+              |   
T Consensus         5 pvt~~li~~~v~vf~~~~~~~-~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~   83 (181)
T 2xov_A            5 PVTWVMMIACVVVFIAMQILG-DQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGK   83 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-HHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhC-cHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            356666666666554443321 11245677888874433 7999999999999999999888              1   


Q ss_pred             ------------cc-eeeee--eccchHHHHHHHHHHh---hhhcCCcee
Q 024772           75 ------------VK-KFTYM--PLSGFQGVLAGFLVGI---KQIVPDQEL  106 (262)
Q Consensus        75 ------------~~-~~l~~--~i~G~~~~~~g~lVA~---kQl~Pd~~v  106 (262)
                                  +- .+++.  +..|.+|.+.|++.++   ....|+.++
T Consensus        84 fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~  133 (181)
T 2xov_A           84 LIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGI  133 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCcee
Confidence                        11 11111  3569999999988765   356677764

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=96.62  E-value=0.00085  Score=57.24  Aligned_cols=57  Identities=12%  Similarity=0.113  Sum_probs=40.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhh--hhcceeEeecCcccc-chhHHHHHHhhccccceEEeec
Q 024772           14 FTKLCKGLAVVLVGGHILVQLLP--ASVSVLALIPARTIP-FAWNLLTAGYIEQTVHGVRPSF   73 (262)
Q Consensus        14 ~tr~~k~i~~vl~~~~~Ls~~~~--~~~~~L~liP~~~~~-~pWtl~T~~fvE~~i~~~i~s~   73 (262)
                      +|+.+..+|+++   |++....+  ....++++.|..... .+|+++|+.|+|.+++++++|+
T Consensus        11 vt~~li~~~v~v---fll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm   70 (196)
T 2nr9_A           11 ITLILTALCVLI---YIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNL   70 (196)
T ss_dssp             HHHHHHHHHHHH---HHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHH
Confidence            555555555544   44443333  245678888876543 7999999999999999999888

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	96.07
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	96.03

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.00074  Score=54.27  Aligned_cols=59  Identities=14%  Similarity=0.038  Sum_probs=36.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhcceeEeecCcccc-chhHHHHHHhhccccceEEeec
Q 024772           14 FTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIP-FAWNLLTAGYIEQTVHGVRPSF   73 (262)
Q Consensus        14 ~tr~~k~i~~vl~~~~~Ls~~~~~~~~~L~liP~~~~~-~pWtl~T~~fvE~~i~~~i~s~   73 (262)
                      +|..+..+|++..+...+.. ......++...+..... .+|+++|+.|+|.+++++++|+
T Consensus         6 vT~~li~i~~~vf~~~~~~~-~~~~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~   65 (180)
T d3b45a1           6 VTWVMMIACVVVFIAMQILG-DQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNL   65 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-HHHHHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhC-cHHHHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHH
Confidence            45555555555433322221 11233344444444444 7999999999999999999988

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=96.03  E-value=0.00029  Score=57.42  Aligned_cols=114  Identities=17%  Similarity=0.210  Sum_probs=61.9

Q ss_pred             eeEeecCcccc--chhHHHHHHhhccccceEEeec--------------c---------------cce---eeeeeccch
Q 024772           41 VLALIPARTIP--FAWNLLTAGYIEQTVHGVRPSF--------------D---------------VKK---FTYMPLSGF   86 (262)
Q Consensus        41 ~L~liP~~~~~--~pWtl~T~~fvE~~i~~~i~s~--------------g---------------~~~---~l~~~i~G~   86 (262)
                      .+...|.....  .+|+++|+.|+|.++++++.|+              |               +-.   ....+..|.
T Consensus        33 ~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~vGa  112 (189)
T d2nr9a1          33 YLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGL  112 (189)
T ss_dssp             HHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCS
T ss_pred             HHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCcccc
Confidence            33344544433  6999999999999999999998              1               110   111367899


Q ss_pred             HHHHHHHHHHhhhhcCCceeEEeccccchhHHHHHHHHHHHHHHhh------hhhhhHHHHHHHHHHHHHHHhhhcc
Q 024772           87 QGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTA------ESAAYLPTLIFGTYMGWIYLRYLQK  157 (262)
Q Consensus        87 ~~~~~g~lVA~kQl~Pd~~v~~~~ir~K~lP~i~l~~~~~~~~~~~------~~~~~~~~~~~G~~~sW~YLRF~Q~  157 (262)
                      +|.+.|++.++--..+.+.... ++..+.+..+.+  ..++.+...      .....+.=...|++.+|++-|.-|+
T Consensus       113 SG~v~gl~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~aHl~G~l~G~~~g~~~~~~~k~  186 (189)
T d2nr9a1         113 SGVVYAVLGYVFIRDKLNHHLF-DLPEGFFTMLLV--GIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRKN  186 (189)
T ss_dssp             HHHHHHHHHHHHHHHHSSTTSC-CCCCSSTTTTTT--TTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhHh-ccHHHHHHHHHH--HHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHccccc
Confidence            9999998765443333333221 122222222221  122222211      1112222245688888887665554