Citrus Sinensis ID: 024791

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MAKNINNINENASLDILRSSSNSAAGGAASSSSSSSCSESPTKKPSNNININCRREKKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAAAAFQAEPDPLQLPHVRVLSSSSNSNTTTGTTSLLSSDSTNVNTQELTSSPNDSLHLHHRDDDDAFFDLPDLFINGSDHLGGGFCSYLSTSVDTGFRLEEPFLWEYQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHcccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHccccEEccccHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
makninninenaSLDIlrsssnsaaggaassssssscsesptkkpsnninincrrekkkaqngkhrtcsstgccyrgvrmrswgkwvSEIREprkksriwlgtypipemaARAHDVAALAIKGRSaflnfpllahqlpsplskspKDIQAAAAEAAAAfqaepdplqlphvrvlssssnsntttgttsllssdstnvntqeltsspndslhlhhrddddaffdlpdlfingsdhlgggfcsylstsvdtgfrleepflweyq
Flexible Loop (DISEMBL)
MAKNINNINENASLDILRSSSNSAAGGAAssssssscsesptkkpsnninincrrekkkaqngkhrtcsstgccyrgvrmrswgkwvseireprkksriWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAAAAFQAEPDPLQLPHVRVLssssnsntttgttsllssdstnVNTQELTSSPNDSLHLHHRDDDDAFFDLPDLFINGSDHLGGGFCSYLSTSVDTGFRLEEPFLWEYQ
Low Complexity Region (SEG)
MAKNINNINENASLDILRsssnsaaggaassssssscsesPTKKPSNNININCRREKKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIqaaaaeaaaafqaePDPLQLPHVRVlssssnsntttgttsllssdstnvntQELTSSPNdslhlhhrddddaffdlpdlfINGSDHLGGGFCSYLSTSVDTGFRLEEPFLWEYQ
Disordered region (IsUnstruct)
********************************************************************SSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLAH***********************************************************************************DAFFDLPDLFINGSDHLGGGFCSYLSTSVDTGFRLEEPFLWE**
Disordered Region (DISOPRED)
***************************************************************************RGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLAHQLPSPL*K**KDIQAAAAE**********************************************************HHRDDDDAFFDLPDLFINGSDHLGGGFCSYLSTSVDTGFRLEEPFLWEYQ
Disordered Region (DISEMBL)
MAKNINNINENASLDILRS**************************SNNININCRRE*************STGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLAHQLPS******************AFQAEPDPLQLPHVRVL*********************************DSLHLHHRDDDDAFFDLPDLFINGSDHLGGGFCSYLSTSVDTGFRLEEPFLWEYQ
Disordered Region (DISPRO)
*********************************************************************STGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAAAAF*************************************************SLHLHHRDDDDAFFDLPDLFINGSDHLGGGFCSYL**********EEPFLWEY*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKNINNINENASLDILRSSSNSAAGGAASSSSSSSCSESPTKKPSNNININCRREKKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAAAAFQAEPDPLQLPHVRVLSSSSNSNTTTGTTSLLSSDSTNVNTQELTSSPNDSLHLHHRDDDDAFFDLPDLFINGSDHLGGGFCSYLSTSVDTGFRLEEPFLWEYQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q8LBQ7	295	Ethylene-responsive trans	yes	no	0.744	0.661	0.474	1e-42
Q9M210	256	Ethylene-responsive trans	no	no	0.675	0.691	0.497	2e-36
Q9LYD3	236	Dehydration-responsive el	no	no	0.366	0.406	0.660	3e-33
Q9M080	221	Ethylene-responsive trans	no	no	0.454	0.538	0.553	4e-33
Q9ZQP3	194	Ethylene-responsive trans	no	no	0.557	0.752	0.521	7e-32
Q39127	218	Ethylene-responsive trans	no	no	0.431	0.518	0.606	1e-31
Q9SUK8	179	Ethylene-responsive trans	no	no	0.286	0.418	0.813	4e-30
Q52QU1	225	Ethylene-responsive trans	no	no	0.358	0.417	0.747	7e-29
Q9LU18	236	Ethylene-responsive trans	no	no	0.290	0.322	0.75	9e-28
Q9FJ93	224	Dehydration-responsive el	no	no	0.396	0.464	0.613	6e-27

>sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/213 (47%), Positives = 127/213 (59%), Gaps = 18/213 (8%)

Query: 57  KKKAQNG--KHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAH 114
           K++  NG  KH T       YRGVRMRSWGKWVSEIREPRKKSRIWLGTYP  EMAARAH
Sbjct: 87  KRRKTNGGDKHPT-------YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAH 139

Query: 115 DVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAAAAFQAEPDPLQLPHVRVL 174
           DVAALAIKG +A+LNFP LA +LP P++ SPKDIQAAA+ AA  +Q   + +    V  +
Sbjct: 140 DVAALAIKGTTAYLNFPKLAGELPRPVTNSPKDIQAAASLAAVNWQDSVNDVSNSEVAEI 199

Query: 175 SSSSNSNTTTG---TTSLLSSDSTNVNTQELTSSPNDSLHLHHRDDDDAFFDLPDLFING 231
             +  S        ++   ++ +T        S  + S       +++  FDLPDLF + 
Sbjct: 200 VEAEPSRAVVAQLFSSDTSTTTTTQSQEYSEASCASTSACTDKDSEEEKLFDLPDLFTDE 259

Query: 232 SDHL--GGGFCSYLST----SVDTGFRLEEPFL 258
           ++ +     FC Y ST      D GFRLEEPF 
Sbjct: 260 NEMMIRNDAFCYYSSTWQLCGADAGFRLEEPFF 292

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M210|ERF35_ARATH Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1

 Score =  152 bits (384), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/193 (49%), Positives = 115/193 (59%), Gaps = 16/193 (8%)

Query: 75  YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLA 134
           YRGVRMRSWGKWVSEIREPRKKSRIWLGTYP  EMAARAHDVAALAIKG S FLNFP L+
Sbjct: 71  YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFPELS 130

Query: 135 HQLPSPLSKSPKDIQAAAAEAAAAFQAEPDPLQLPHVRVLSSSSNSNTTTGTTSLLSSDS 194
             LP P+S SPKDIQAAA +AA A       +       LS S           L ++ S
Sbjct: 131 GLLPRPVSCSPKDIQAAATKAAEATTWHKPVIDKKLADELSHSE---------LLSTAQS 181

Query: 195 TNVNTQELTSSPNDSLHLHHRDDDDAFFDLPDLFINGSDHLGGGFC-------SYLSTSV 247
           +  ++   +S  +++       +++  FDLPDLF +G  +    FC         L    
Sbjct: 182 STSSSFVFSSDTSETSSTDKESNEETVFDLPDLFTDGLMNPNDAFCLCNGTFTWQLYGEE 241

Query: 248 DTGFRLEEPFLWE 260
           D GFR EEPF W+
Sbjct: 242 DVGFRFEEPFNWQ 254

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/103 (66%), Positives = 79/103 (76%), Gaps = 7/103 (6%)

Query: 54  RREKKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARA 113
           ++ K+   +GKH         YRGVRMR+WGKWVSEIREPRKKSRIWLGT+P PEMAARA
Sbjct: 37  KKTKRGRDSGKH-------PVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARA 89

Query: 114 HDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAA 156
           HDVAAL+IKG +A LNFP LA   P P+S SP+DIQ AA +AA
Sbjct: 90  HDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAA 132

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M080|ERF43_ARATH Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 91/132 (68%), Gaps = 13/132 (9%)

Query: 56  EKKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHD 115
           +K+K +N K          YRGVRMRSWGKWVSEIREPRKKSRIWLGT+P  EMA RAHD
Sbjct: 7   DKEKKENNKQ-------PVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHD 59

Query: 116 VAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAA------AAFQAEPDPLQLP 169
           VAA++IKG SA LNFP L+  LP P+S SP+D++AAA +AA       AF+++ +  +  
Sbjct: 60  VAAMSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAALMDFDTTAFRSDTETSETT 119

Query: 170 HVRVLSSSSNSN 181
               +S SS SN
Sbjct: 120 TSNKMSESSESN 131

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQP3|ERF38_ARATH Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1

 Score =  137 bits (346), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/184 (52%), Positives = 110/184 (59%), Gaps = 38/184 (20%)

Query: 75  YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLA 134
           +RGVRMR WGKWVSEIREP+KKSRIWLGT+   EMAARAHDVAALAIKG SA LNFP LA
Sbjct: 45  FRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPELA 104

Query: 135 HQLPSPLSKSPKDIQAAAAEAAAAFQAEPDPLQLPHVRVLSSSSNSNTTTGTTSLLSSDS 194
           + LP P S  PKDIQAAAA AAAA   + D         + +SS S + T T        
Sbjct: 105 YHLPRPASADPKDIQAAAAAAAAAVAIDMD---------VETSSPSPSPTVTE------- 148

Query: 195 TNVNTQELTSSPNDSLHLHHRDDDDAFFDLPDLFINGSDHLGGGFCSYLSTSVDTGFRLE 254
                   TSSP   + L     DDAF DLPDL +N + ++ G + S         F  E
Sbjct: 149 --------TSSPA-MIAL----SDDAFSDLPDLLLNVNHNIDGFWDS---------FPYE 186

Query: 255 EPFL 258
           EPFL
Sbjct: 187 EPFL 190

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39127|TINY_ARATH Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 83/122 (68%), Gaps = 9/122 (7%)

Query: 37  CSESPTKKPSNNININCRREKKK--AQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPR 94
            SES     ++ +      EKKK    +GKH         YRGVR R+WGKWVSEIREPR
Sbjct: 3   ASESTKSWEASAVRQENEEEKKKPVKDSGKH-------PVYRGVRKRNWGKWVSEIREPR 55

Query: 95  KKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAE 154
           KKSRIWLGT+P PEMAARAHDVAAL+IKG SA LNFP LA   P P S SP+DIQ AA +
Sbjct: 56  KKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALK 115

Query: 155 AA 156
           AA
Sbjct: 116 AA 117

Putative transcriptional activator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUK8|ERF39_ARATH Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1

 Score =  131 bits (330), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/75 (81%), Positives = 64/75 (85%)

Query: 75  YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLA 134
           +RGVRMR WGKWVSEIREPRKKSRIWLGT+  PEMAARAHDVAALAIKG SA LNFP LA
Sbjct: 40  FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELA 99

Query: 135 HQLPSPLSKSPKDIQ 149
           + LP P S  PKDIQ
Sbjct: 100 YHLPRPASADPKDIQ 114

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QU1|ERF42_ARATH Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1

 Score =  127 bits (320), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 71/95 (74%), Positives = 76/95 (80%), Gaps = 1/95 (1%)

Query: 74  CYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLL 133
            YRG RMRSWGKWVSEIREPRKKSRIWLGT+P  EMAARAHDVAAL+IKG SA LNFP L
Sbjct: 25  VYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPEL 84

Query: 134 AHQLPSPLSKSPKDIQAAAAEAAAA-FQAEPDPLQ 167
           A  LP P+S S +DIQAAAAEAA   F+  P  LQ
Sbjct: 85  ADFLPRPVSLSQQDIQAAAAEAALMDFKTVPFHLQ 119

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU18|ERF36_ARATH Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=2

 Score =  124 bits (310), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 61/76 (80%)

Query: 74  CYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLL 133
            YRGVRMRSWGKWVSEIR+PRKK+RIWLGT+   +MAARAHDVAAL IKG SA LNFP L
Sbjct: 60  VYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPEL 119

Query: 134 AHQLPSPLSKSPKDIQ 149
           A   P P S SP DIQ
Sbjct: 120 ASLFPRPASSSPHDIQ 135

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ93|DRE1D_ARATH Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1

 Score =  121 bits (303), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 75/106 (70%), Gaps = 2/106 (1%)

Query: 57  KKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDV 116
           KK+A   K R        YRGVR R+ GKWV E+REP KKSRIWLGT+P  EMAARAHDV
Sbjct: 38  KKRAGRKKFRETRHP--IYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDV 95

Query: 117 AALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAAAAFQAE 162
           AALA++GRSA LNF   A +L  P +  PK+IQ AA+EAA AFQ E
Sbjct: 96  AALALRGRSACLNFADSAWRLRIPETTCPKEIQKAASEAAMAFQNE 141

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
224101833	269	AP2/ERF domain-containing transcription	0.706	0.687	0.564	2e-48
224137034	269	AP2/ERF domain-containing transcription	0.706	0.687	0.564	2e-48
356504603	287	PREDICTED: ethylene-responsive transcrip	0.763	0.696	0.485	2e-45
255647266	287	unknown [Glycine max]	0.763	0.696	0.485	2e-45
297824531	290	hypothetical protein ARALYDRAFT_483623 [	0.744	0.672	0.497	7e-45
224063655	272	AP2/ERF domain-containing transcription	0.698	0.672	0.577	3e-44
255541118	276	Transcriptional factor TINY, putative [R	0.748	0.710	0.528	1e-43
356523068	363	PREDICTED: ethylene-responsive transcrip	0.637	0.460	0.563	7e-43
21592664	295	putative AP2 domain transcription factor	0.744	0.661	0.478	1e-41
359489278	227	PREDICTED: ethylene-responsive transcrip	0.664	0.766	0.509	2e-41

>gi|224101833|ref|XP_002334238.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372081|gb|ABQ62972.1| TINY-like protein [Populus trichocarpa] gi|222870106|gb|EEF07237.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/216 (56%), Positives = 135/216 (62%), Gaps = 31/216 (14%)

Query: 54  RREKKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARA 113
           R+  +   NGKH T       YRGVRMRSWGKWV EIREPRKKSRIWLGTYP  EMAARA
Sbjct: 77  RKTTRNENNGKHPT-------YRGVRMRSWGKWVCEIREPRKKSRIWLGTYPTAEMAARA 129

Query: 114 HDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAAAAFQAEPDPLQLPHVRV 173
           HDVAALAIKG SA+LNFP L  +LP PLSKSPKDIQAAAA+AAAA          P  R 
Sbjct: 130 HDVAALAIKGGSAYLNFPELVDELPRPLSKSPKDIQAAAAKAAAA--------SFPETRH 181

Query: 174 LSSSSNSNTTTGTTSL----LSSDSTNVNTQELTSSPNDSLHLHHRDDDDAFFDLPDLFI 229
             + + +        L    LS +    N QE +SSP+        D DD  FDLPDLFI
Sbjct: 182 CEAEAEAEADMSHAELNVSNLSDNLAMDNIQESSSSPS-------TDVDDKLFDLPDLFI 234

Query: 230 NGSDHLGGGFCSY----LSTSVDTGFRLEEPFLWEY 261
           +G +H   GFC Y       S DTGFRLEEPFLWEY
Sbjct: 235 DGVNH-SDGFCYYSPPWQLCSADTGFRLEEPFLWEY 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137034|ref|XP_002327006.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372083|gb|ABQ62973.1| TINY-like protein [Populus trichocarpa] gi|222835321|gb|EEE73756.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/216 (56%), Positives = 135/216 (62%), Gaps = 31/216 (14%)

Query: 54  RREKKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARA 113
           R+  +   NGKH T       YRGVRMRSWGKWV EIREPRKKSRIWLGTYP  EMAARA
Sbjct: 77  RKTTRNENNGKHPT-------YRGVRMRSWGKWVCEIREPRKKSRIWLGTYPTAEMAARA 129

Query: 114 HDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAAAAFQAEPDPLQLPHVRV 173
           HDVAALAIKG SA+LNFP L  +LP PLSKSPKDIQAAAA+AAAA          P  R 
Sbjct: 130 HDVAALAIKGGSAYLNFPELVDELPRPLSKSPKDIQAAAAKAAAA--------SFPETRH 181

Query: 174 LSSSSNSNTTTGTTSL----LSSDSTNVNTQELTSSPNDSLHLHHRDDDDAFFDLPDLFI 229
             + + +        L    LS +    N QE +SSP+        D DD  FDLPDLFI
Sbjct: 182 CEAEAEAEADMSHAELNVSNLSDNLAMDNIQESSSSPS-------TDVDDKLFDLPDLFI 234

Query: 230 NGSDHLGGGFCSY----LSTSVDTGFRLEEPFLWEY 261
           +G +H   GFC Y       S DTGFRLEEPFLWEY
Sbjct: 235 DGVNH-SDGFCYYSPPWQLCSADTGFRLEEPFLWEY 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504603|ref|XP_003521085.1| PREDICTED: ethylene-responsive transcription factor ERF034-like [Glycine max]

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/241 (48%), Positives = 143/241 (59%), Gaps = 41/241 (17%)

Query: 36  SCSESPTKKPSNNININ------------CRREKKKAQNGKHRTCSSTGCCYRGVRMRSW 83
           SC++  TK P N+  I+            C++ ++   N  H         YRGVRMR+W
Sbjct: 70  SCTKEHTKTPQNDSTISQTSLENKEDSKECKKRQRDNSNQNHHPT------YRGVRMRNW 123

Query: 84  GKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLAHQLPSPLSK 143
           GKWVSEIREPRKKSRIWLGTYP  EMAARAHDVAALAIKG SA+LNFP LA +LP P S 
Sbjct: 124 GKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPRPAST 183

Query: 144 SPKDIQ-AAAAEAAAAFQAEPDPLQLPHVRVLSSSSNSNTTTGTTSLLSSDSTNVNTQEL 202
           SPKDIQ AA+  A  AF+     ++   +        +     T+S LS D    NTQE 
Sbjct: 184 SPKDIQAAASKAANTAFEV----VKHCQITEEQEQEQNQAEQETSSTLSMD----NTQEP 235

Query: 203 TSSPNDSLHLHHRDDDDAFFDLPDLFINGSDHLGGGFCSYLS---TSVDTGFRLEEPFLW 259
           +SS       H  +DDD  FDLPDLF +G++    G CS+ S    +VD+GFRLEE F W
Sbjct: 236 SSS-------HSTNDDDTLFDLPDLFPDGNN----GLCSFSSWHLCAVDSGFRLEESFFW 284

Query: 260 E 260
           E
Sbjct: 285 E 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647266|gb|ACU24100.1| unknown [Glycine max]

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/241 (48%), Positives = 143/241 (59%), Gaps = 41/241 (17%)

Query: 36  SCSESPTKKPSNNININ------------CRREKKKAQNGKHRTCSSTGCCYRGVRMRSW 83
           SC++  TK P N+  I+            C++ ++   N  H         YRGVRMR+W
Sbjct: 70  SCTKEHTKTPQNDSTISQTSLENKEDSKECKKRQRDNSNQNHHPT------YRGVRMRNW 123

Query: 84  GKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLAHQLPSPLSK 143
           GKWVSEIREPRKKSRIWLGTYP  EMAARAHDVAALAIKG SA+LNFP LA +LP P S 
Sbjct: 124 GKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPRPAST 183

Query: 144 SPKDIQ-AAAAEAAAAFQAEPDPLQLPHVRVLSSSSNSNTTTGTTSLLSSDSTNVNTQEL 202
           SPKDIQ AA+  A  AF+     ++   +        +     T+S LS D    NTQE 
Sbjct: 184 SPKDIQAAASKAANTAFEV----VKHCQITEEQEQEQNQAEQETSSTLSMD----NTQEP 235

Query: 203 TSSPNDSLHLHHRDDDDAFFDLPDLFINGSDHLGGGFCSYLS---TSVDTGFRLEEPFLW 259
           +SS       H  +DDD  FDLPDLF +G++    G CS+ S    +VD+GFRLEE F W
Sbjct: 236 SSS-------HSTNDDDTLFDLPDLFPDGNN----GLCSFSSWHWCAVDSGFRLEESFFW 284

Query: 260 E 260
           E
Sbjct: 285 E 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824531|ref|XP_002880148.1| hypothetical protein ARALYDRAFT_483623 [Arabidopsis lyrata subsp. lyrata] gi|297325987|gb|EFH56407.1| hypothetical protein ARALYDRAFT_483623 [Arabidopsis lyrata subsp. lyrata]

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 106/213 (49%), Positives = 128/213 (60%), Gaps = 18/213 (8%)

Query: 55  REKKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAH 114
           + +K +   KH T       YRGVRMRSWGKWVSEIREPRKKSRIWLGTYP  EMAARAH
Sbjct: 83  KRRKTSGGDKHPT-------YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAH 135

Query: 115 DVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAAAAFQAEPDPLQLPHVRVL 174
           DVAALAIKG +A+LNFP L+ +LP P++ SPKDIQAAA+ AA  +Q   + +    V  L
Sbjct: 136 DVAALAIKGTTAYLNFPELSGELPRPVTNSPKDIQAAASLAAVNWQDPVNDVSNSEVAEL 195

Query: 175 SSSSNSNTTTGTTSLLSSDSTNVNTQELTSSPNDSLHLHHRDDD---DAFFDLPDLFING 231
           + +  S        L SSD++   TQ   SS          D D   +  FDLPDLF + 
Sbjct: 196 AEAEPSRAVVA--QLFSSDTSTATTQSQESSEASCASTSCTDKDSEEEKLFDLPDLFTDE 253

Query: 232 SDHL--GGGFCSYLST----SVDTGFRLEEPFL 258
           ++ +     FC Y ST      D GFRLEEPF 
Sbjct: 254 NEMMIRNDAFCYYSSTWQLCGADAGFRLEEPFF 286

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063655|ref|XP_002301249.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372085|gb|ABQ62974.1| TINY-like protein [Populus trichocarpa] gi|222842975|gb|EEE80522.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/213 (57%), Positives = 137/213 (64%), Gaps = 30/213 (14%)

Query: 54  RREKKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARA 113
           R+  +  +NGKH T       YRGVRMRSWGKWVSEIREPRKKSRIWLGTYP  EMAARA
Sbjct: 85  RKTTENEKNGKHPT-------YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARA 137

Query: 114 HDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAAAAFQAEPDPLQLPHVRV 173
           HDVAALAIKG SA+LNFP  AH+LP PLSKSPKDIQAAAA+AAAA   E         R 
Sbjct: 138 HDVAALAIKGGSAYLNFPEFAHELPPPLSKSPKDIQAAAAKAAAASFTE--------TRY 189

Query: 174 LSSSSNSNTTTGTTSLLSSDSTNV-NTQELTSSPNDSLHLHHRDDDDAFFDLPDLFINGS 232
                        ++L  SDS  + NTQE +SSP+          DD  FDLPDLFI+G 
Sbjct: 190 CEGEGGGEAELNVSNL--SDSLAMDNTQESSSSPSTD-------SDDTLFDLPDLFIDGV 240

Query: 233 DHLGGGFCSYLST----SVDTGFRLEEPFLWEY 261
            H   GFC Y S+    + DTGFRL EPFL EY
Sbjct: 241 HH-SDGFCYYSSSWQLCAADTGFRLGEPFLLEY 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541118|ref|XP_002511623.1| Transcriptional factor TINY, putative [Ricinus communis] gi|223548803|gb|EEF50292.1| Transcriptional factor TINY, putative [Ricinus communis]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/225 (52%), Positives = 140/225 (62%), Gaps = 29/225 (12%)

Query: 46  SNNININCRREKK--KAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGT 103
           S N N + R+++K    +N KH T       YRGVRMRSWGKWVSEIREPRKKSRIWLGT
Sbjct: 69  SGNNNESSRKKQKSDNNENAKHPT-------YRGVRMRSWGKWVSEIREPRKKSRIWLGT 121

Query: 104 YPIPEMAARAHDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAAAAFQAEP 163
           YP  EMAARAHDVAALAIKG SA+LNFP LA  LP P +K+PKDIQ AAA+AA A     
Sbjct: 122 YPTAEMAARAHDVAALAIKGNSAYLNFPELALGLPRPATKAPKDIQVAAAKAATA----- 176

Query: 164 DPLQLPHVRVLSSSSNSNTTTGTTSLLSSDSTNV-NTQELTSSPNDSLHLHHR--DDDDA 220
                  V  L  +  S+   G +    S S  + NT+E TSSP+ +  +     D DD 
Sbjct: 177 -------VNFLEKTQ-SDVEAGMSQAEGSSSLVIDNTRESTSSPSTATTIATTSNDSDDT 228

Query: 221 FFDLPDLFINGSDHLGGGFCSYLST----SVDTGFRLEEPFLWEY 261
            FDLPDLF+ G D     F  Y  +    + DTGFRLEEP+LWEY
Sbjct: 229 LFDLPDLFVEGIDRHKNDFLHYSPSWQLCAADTGFRLEEPYLWEY 273

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523068|ref|XP_003530164.1| PREDICTED: ethylene-responsive transcription factor ERF034-like [Glycine max]

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 107/190 (56%), Positives = 126/190 (66%), Gaps = 23/190 (12%)

Query: 75  YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLA 134
           YRGVRMR+WGKWVSEIREPRKKSRIWLGTYP  EMAARAHDVAALAIKG SA+LNFP LA
Sbjct: 191 YRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELA 250

Query: 135 HQLPSPLSKSPKDIQAAAAEAAAAFQAEPDPLQLPHVRVLSSSSNSNTTTGTTSLLSSDS 194
            +LP P+S SPKDIQAAAA+AA     E    Q+        +  +     ++S LS D 
Sbjct: 251 QELPRPVSTSPKDIQAAAAKAANTAFEEVRHCQI----TEEEAEQNQAEQASSSTLSMD- 305

Query: 195 TNVNTQELTSSPNDSLHLHHRDDDDAFFDLPDLFINGSDHLGGGFCSYLST----SVDTG 250
              N QE +SS       H   DDD  FDLPDLF +G++    G CS+ S+    +VD+G
Sbjct: 306 ---NPQEPSSS-------HSTIDDDTLFDLPDLFPDGNN----GLCSFSSSWHLCAVDSG 351

Query: 251 FRLEEPFLWE 260
           FRLEE F +E
Sbjct: 352 FRLEESFFYE 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592664|gb|AAM64613.1| putative AP2 domain transcription factor [Arabidopsis thaliana]

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/213 (47%), Positives = 128/213 (60%), Gaps = 18/213 (8%)

Query: 57  KKKAQNG--KHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAH 114
           K++  NG  KH T       YRGVRMRSWGKWVSEIREPRKKSRIWLGTYP  EMAARAH
Sbjct: 87  KRRKTNGGDKHPT-------YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAH 139

Query: 115 DVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAAAAFQAEPDPLQLPHVRVL 174
           DVAALAIKG +A+LNFP LA +LP P++ SPKDIQAAA+ AA  +Q   + +    V  +
Sbjct: 140 DVAALAIKGTTAYLNFPKLAGELPRPVTNSPKDIQAAASLAAVNWQDSVNDVSNSEVAEI 199

Query: 175 SSSSNSNTTTG---TTSLLSSDSTNVNTQELTSSPNDSLHLHHRDDDDAFFDLPDLFING 231
             +  S T      ++   ++ +T        S  + S       +++  FDLPDLF + 
Sbjct: 200 VEAEPSRTVVAQLFSSDTSTTTTTQSQEYSEASCASTSACTDKDSEEEKLFDLPDLFTDE 259

Query: 232 SDHL--GGGFCSYLST----SVDTGFRLEEPFL 258
           ++ +     FC Y ST      D GFRLEEPF 
Sbjct: 260 NEMMIRNDAFCYYSSTWQLCGADAGFRLEEPFF 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489278|ref|XP_002273974.2| PREDICTED: ethylene-responsive transcription factor ERF034-like [Vitis vinifera]

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/214 (50%), Positives = 129/214 (60%), Gaps = 40/214 (18%)

Query: 54  RREKKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARA 113
           R+ +K   +GK          YRGVRMR+WGKWVSEIREP+KKSRIWLGTYP  EMAARA
Sbjct: 47  RKRQKTENDGKQHPT------YRGVRMRNWGKWVSEIREPKKKSRIWLGTYPTAEMAARA 100

Query: 114 HDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDIQAAAAEAAAAFQAEPDPLQLPHVRV 173
           HDVAALAIKG S  LNFP LAH LP P S SPKDIQAAAAEAA    ++PD  ++     
Sbjct: 101 HDVAALAIKGSSPHLNFPELAHALPRPASTSPKDIQAAAAEAANTTFSQPDETEVEAEHP 160

Query: 174 LSSSSNSNTTTGTTSLLSSDSTNVNTQELTSSPNDSLHLHHRDDDDAFFDLPDLFINGSD 233
           +SS +         +L SS+ST+V                  D+DDAFFDLPD+ ++  D
Sbjct: 161 VSSEN---------TLESSNSTSV------------------DNDDAFFDLPDIVMDVMD 193

Query: 234 HLGGGFCSYL------STSVDTGFR-LEEPFLWE 260
             G  FC Y       +   D  FR +EEPFLWE
Sbjct: 194 LTGDRFCYYYYPLWQPAGGADNIFRPVEEPFLWE 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2055007	295	AT2G44940 [Arabidopsis thalian	0.324	0.288	0.723	3.9e-35
TAIR|locus:2103301	256	AT3G60490 [Arabidopsis thalian	0.282	0.289	0.851	5.6e-34
TAIR|locus:2043495	225	ESE2 "ethylene and salt induci	0.366	0.426	0.640	6.8e-30
TAIR|locus:2144296	236	TINY2 "AT5G11590" [Arabidopsis	0.354	0.394	0.659	5.6e-29
TAIR|locus:2195985	244	AT1G77200 [Arabidopsis thalian	0.324	0.348	0.724	2.4e-28
TAIR|locus:2129111	179	AT4G16750 [Arabidopsis thalian	0.343	0.502	0.677	2.4e-28
TAIR|locus:2145249	218	tny "TINY" [Arabidopsis thalia	0.328	0.394	0.694	3.9e-28
TAIR|locus:2058764	194	ERF38 "ERF family protein 38"	0.374	0.505	0.632	8.2e-28
TAIR|locus:2134128	221	AT4G32800 [Arabidopsis thalian	0.328	0.389	0.655	1.3e-27
TAIR|locus:2094897	236	AT3G16280 [Arabidopsis thalian	0.381	0.423	0.596	1.5e-26

TAIR|locus:2055007 AT2G44940 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
 Identities = 68/94 (72%), Positives = 75/94 (79%)

Query:    57 KKKAQNG--KHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAH 114
             K++  NG  KH T       YRGVRMRSWGKWVSEIREPRKKSRIWLGTYP  EMAARAH
Sbjct:    87 KRRKTNGGDKHPT-------YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAH 139

Query:   115 DVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDI 148
             DVAALAIKG +A+LNFP LA +LP P++ SPKDI
Sbjct:   140 DVAALAIKGTTAYLNFPKLAGELPRPVTNSPKDI 173

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2103301 AT3G60490 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
 Identities = 63/74 (85%), Positives = 65/74 (87%)

Query:    75 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLA 134
             YRGVRMRSWGKWVSEIREPRKKSRIWLGTYP  EMAARAHDVAALAIKG S FLNFP L+
Sbjct:    71 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFPELS 130

Query:   135 HQLPSPLSKSPKDI 148
               LP P+S SPKDI
Sbjct:   131 GLLPRPVSCSPKDI 144

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2043495 ESE2 "ethylene and salt inducible 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 66/103 (64%), Positives = 75/103 (72%)

Query:    46 SNNININCRREKKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYP 105
             S+  +  C  +KKK +  K +     G  YRG RMRSWGKWVSEIREPRKKSRIWLGT+P
Sbjct:     4 SHGSDTECSSKKKKEKT-KEK-----GV-YRGARMRSWGKWVSEIREPRKKSRIWLGTFP 56

Query:   106 IPEMAARAHDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDI 148
               EMAARAHDVAAL+IKG SA LNFP LA  LP P+S S +DI
Sbjct:    57 TAEMAARAHDVAALSIKGSSAILNFPELADFLPRPVSLSQQDI 99

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2144296 TINY2 "AT5G11590" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 64/97 (65%), Positives = 74/97 (76%)

Query:    56 EKKKAQNGKHRTC----SSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAA 111
             +K KA+  + +T     S     YRGVRMR+WGKWVSEIREPRKKSRIWLGT+P PEMAA
Sbjct:    28 DKSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAA 87

Query:   112 RAHDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDI 148
             RAHDVAAL+IKG +A LNFP LA   P P+S SP+DI
Sbjct:    88 RAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDI 124

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2195985 AT1G77200 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 63/87 (72%), Positives = 67/87 (77%)

Query:    62 NGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAI 121
             N K R  S  G  YRGVRMR+WGKWVSEIREPRKKSRIWLGT+  PEMAARAHD AAL I
Sbjct:    32 NTKKRVRSDPG--YRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTI 89

Query:   122 KGRSAFLNFPLLAHQLPSPLSKSPKDI 148
             KG SA LNFP LA  LP P S SP+D+
Sbjct:    90 KGTSAVLNFPELATYLPRPASSSPRDV 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2129111 AT4G16750 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 61/90 (67%), Positives = 65/90 (72%)

Query:    75 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLA 134
             +RGVRMR WGKWVSEIREPRKKSRIWLGT+  PEMAARAHDVAALAIKG SA LNFP LA
Sbjct:    40 FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELA 99

Query:   135 HQLPSPLSKSPKDIXXXXXXXXXXXXXXPD 164
             + LP P S  PKDI              P+
Sbjct:   100 YHLPRPASADPKDIQEAAAAAAAVDWKAPE 129

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2145249 tny "TINY" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 66/95 (69%), Positives = 71/95 (74%)

Query:    56 EKKKA--QNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARA 113
             EKKK    +GKH         YRGVR R+WGKWVSEIREPRKKSRIWLGT+P PEMAARA
Sbjct:    22 EKKKPVKDSGKHPV-------YRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARA 74

Query:   114 HDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDI 148
             HDVAAL+IKG SA LNFP LA   P P S SP+DI
Sbjct:    75 HDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDI 109

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009825 "multidimensional cell growth" evidence=IMP

TAIR|locus:2058764 ERF38 "ERF family protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 62/98 (63%), Positives = 72/98 (73%)

Query:    51 INCRREKKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMA 110
             +  + +KK+A++       S    +RGVRMR WGKWVSEIREP+KKSRIWLGT+   EMA
Sbjct:    21 VKYKPKKKRAKDDDDEKVVSKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMA 80

Query:   111 ARAHDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDI 148
             ARAHDVAALAIKG SA LNFP LA+ LP P S  PKDI
Sbjct:    81 ARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDI 118

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0009834 "secondary cell wall biogenesis" evidence=TAS

TAIR|locus:2134128 AT4G32800 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 61/93 (65%), Positives = 71/93 (76%)

Query:    56 EKKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHD 115
             +K+K +N K          YRGVRMRSWGKWVSEIREPRKKSRIWLGT+P  EMA RAHD
Sbjct:     7 DKEKKENNKQPV-------YRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHD 59

Query:   116 VAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDI 148
             VAA++IKG SA LNFP L+  LP P+S SP+D+
Sbjct:    60 VAAMSIKGTSAILNFPELSKLLPRPVSLSPRDV 92

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2094897 AT3G16280 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 62/104 (59%), Positives = 72/104 (69%)

Query:    45 PSNNININCRREKKKAQNGKHRTCSSTGCCYRGVRMRSWGKWVSEIREPRKKSRIWLGTY 104
             P NN   N R+ ++ + +    + S     YRGVRMRSWGKWVSEIR+PRKK+RIWLGT+
Sbjct:    35 PRNN---NTRKRRRDSSSASSSS-SMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTF 90

Query:   105 PIPEMAARAHDVAALAIKGRSAFLNFPLLAHQLPSPLSKSPKDI 148
                +MAARAHDVAAL IKG SA LNFP LA   P P S SP DI
Sbjct:    91 VTADMAARAHDVAALTIKGSSAVLNFPELASLFPRPASSSPHDI 134

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	3e-33
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	1e-30
pfam00847	53	pfam00847, AP2, AP2 domain	1e-13

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  115 bits (289), Expect = 3e-33
 Identities = 37/59 (62%), Positives = 43/59 (72%)

Query: 75  YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLL 133
           YRGVR R WGKWV+EIR+P K  R+WLGT+   E AARA+D AA   +GRSA LNFP  
Sbjct: 2   YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  108 bits (272), Expect = 1e-30
 Identities = 37/57 (64%), Positives = 43/57 (75%)

Query: 75  YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFP 131
           YRGVR R WGKWV+EIR+P    RIWLGT+   E AARA+D AAL ++G SA LNFP
Sbjct: 3   YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 63.4 bits (155), Expect = 1e-13
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 73  CCYRGVRMR-SWGKWVSEIREP--RKKSRIWLGTYPIPEMAARAHDVAALAIKG 123
             Y+GVR    WG+WV+EIR+P  +KK R  LGT+   E AARA   A L ++G
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.85
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
PHA00280	121	putative NHN endonuclease	99.34
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.1

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.85  E-value=2.3e-21  Score=140.42  Aligned_cols=61  Identities=61%  Similarity=1.019  Sum_probs=57.6

Q ss_pred             CceeeeEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 024791           73 CCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLL  133 (262)
Q Consensus        73 S~YRGVr~r~~GkW~AeI~~p~~~kri~LGtf~T~EeAArAYD~AAl~~~G~~A~lNFP~~  133 (262)
                      |+||||+++++|||+|+|+.+..++++|||+|+|+||||+|||.|+++++|..+.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            5699999998899999999966699999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=6.9e-21  Score=139.58  Aligned_cols=63  Identities=59%  Similarity=0.987  Sum_probs=60.0

Q ss_pred             ceeeeEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCccCC
Q 024791           74 CYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLAHQ  136 (262)
Q Consensus        74 ~YRGVr~r~~GkW~AeI~~p~~~kri~LGtf~T~EeAArAYD~AAl~~~G~~A~lNFP~~~~~  136 (262)
                      +|+||+++++|||+|+|+.|.+++++|||+|+|+||||+|||.|+++++|..+.+|||...++
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            499999998999999999999999999999999999999999999999999999999997764

>PHA00280 putative NHN endonuclease

Probab=99.34  E-value=1.8e-12  Score=107.14  Aligned_cols=56  Identities=13%  Similarity=0.158  Sum_probs=50.4

Q ss_pred             CCCCCceeeeEEC-CCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhcCCCCC
Q 024791           69 SSTGCCYRGVRMR-SWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAF  127 (262)
Q Consensus        69 s~~sS~YRGVr~r-~~GkW~AeI~~p~~~kri~LGtf~T~EeAArAYD~AAl~~~G~~A~  127 (262)
                      +.++|+|+||.++ ..|||+|+|+.  +||+++||.|+++|+|+.||+ ++.+++|.+|.
T Consensus        63 ~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         63 KSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            4567779999987 67999999999  999999999999999999997 77889998874

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.10  E-value=1.6e-10  Score=81.59  Aligned_cols=52  Identities=29%  Similarity=0.482  Sum_probs=45.2

Q ss_pred             CceeeeEEC-CCCcEEEEEecCCC---CeEEeccCCCCHHHHHHHHHHHHHHhcCC
Q 024791           73 CCYRGVRMR-SWGKWVSEIREPRK---KSRIWLGTYPIPEMAARAHDVAALAIKGR  124 (262)
Q Consensus        73 S~YRGVr~r-~~GkW~AeI~~p~~---~kri~LGtf~T~EeAArAYD~AAl~~~G~  124 (262)
                      |+|+||+++ ..++|+|+|+++..   +++++||.|+++++|+++|+.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            569999887 57999999999422   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	262
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-12
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-12

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 75  YRGVRMRSWGKWVSEIREPRKK-SRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPL 132
           YRGVR R WGK+ +EIR+P K  +R+WLGT+   E AA A+D AA  ++G  A LNFPL
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 75  YRGVRMRSWGKWVSEIREPRKK-SRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPL 132
           YRGVR R WGK+ +EIR+P K  +R+WLGT+   E AA A+D AA  ++G  A LNFPL
Sbjct: 6   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 64
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-28

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  102 bits (256), Expect = 2e-28
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 75  YRGVRMRSWGKWVSEIREPRKK-SRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPL 132
           YRGVR R WGK+ +EIR+P K  +R+WLGT+   E AA A+D AA  ++G  A LNFPL
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	81.09

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=6.2e-26  Score=166.20  Aligned_cols=60  Identities=55%  Similarity=0.975  Sum_probs=57.2

Q ss_pred             ceeeeEECCCCcEEEEEecCCC-CeEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 024791           74 CYRGVRMRSWGKWVSEIREPRK-KSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLL  133 (262)
Q Consensus        74 ~YRGVr~r~~GkW~AeI~~p~~-~kri~LGtf~T~EeAArAYD~AAl~~~G~~A~lNFP~~  133 (262)
                      +||||++++||||+|+|++|.+ |++||||||+|+||||+|||.|+++++|..+.||||++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            4999999999999999999975 79999999999999999999999999999999999985

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=81.09  E-value=2.2  Score=37.15  Aligned_cols=39  Identities=15%  Similarity=0.113  Sum_probs=28.6

Q ss_pred             eeEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHH
Q 024791           77 GVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAAL  119 (262)
Q Consensus        77 GVr~r~~GkW~AeI~~p~~~kri~LGtf~T~EeAArAYD~AAl  119 (262)
                      ||++++.|.|..+...  .|+++.+|.  |..+|......+..
T Consensus        15 ~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~   53 (356)
T 1z1b_A           15 NLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANI   53 (356)
T ss_dssp             TEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHH
T ss_pred             cceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHH
Confidence            7877777899877654  788899996  88887666554433

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	8e-31

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  107 bits (268), Expect = 8e-31
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 75  YRGVRMRSWGKWVSEIREPRKK-SRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPL 132
           YRGVR R WGK+ +EIR+P K  +R+WLGT+   E AA A+D AA  ++G  A LNFPL
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.92

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=4.4e-26  Score=165.63  Aligned_cols=60  Identities=53%  Similarity=0.962  Sum_probs=56.1

Q ss_pred             ceeeeEECCCCcEEEEEecCC-CCeEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 024791           74 CYRGVRMRSWGKWVSEIREPR-KKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLL  133 (262)
Q Consensus        74 ~YRGVr~r~~GkW~AeI~~p~-~~kri~LGtf~T~EeAArAYD~AAl~~~G~~A~lNFP~~  133 (262)
                      +||||++|++|||+|+|++|. ++++||||+|+|+||||+|||.|+++++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            399999999999999999875 568999999999999999999999999999999999963