Citrus Sinensis ID: 024811
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 262 | 2.2.26 [Sep-21-2011] | |||||||
| Q5PP70 | 276 | Alpha N-terminal protein | no | no | 0.698 | 0.663 | 0.735 | 5e-78 | |
| A2XMJ1 | 307 | Alpha N-terminal protein | N/A | no | 0.713 | 0.609 | 0.548 | 1e-65 | |
| Q10CT5 | 307 | Alpha N-terminal protein | no | no | 0.713 | 0.609 | 0.543 | 1e-64 | |
| B1H2P7 | 224 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.583 | 0.683 | 0.447 | 8e-36 | |
| Q4KL94 | 224 | N-terminal Xaa-Pro-Lys N- | N/A | no | 0.583 | 0.683 | 0.447 | 2e-35 | |
| Q6NWX7 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.564 | 0.663 | 0.464 | 2e-35 | |
| Q4KLE6 | 223 | N-terminal Xaa-Pro-Lys N- | N/A | no | 0.580 | 0.681 | 0.434 | 1e-34 | |
| Q55DH6 | 270 | Alpha N-terminal protein | yes | no | 0.652 | 0.633 | 0.409 | 2e-33 | |
| Q9BV86 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.576 | 0.677 | 0.443 | 3e-33 | |
| Q8R2U4 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.576 | 0.677 | 0.431 | 9e-33 |
| >sp|Q5PP70|NTM1_ARATH Alpha N-terminal protein methyltransferase 1 OS=Arabidopsis thaliana GN=At5g44450 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 291 bits (744), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 139/189 (73%), Positives = 158/189 (83%), Gaps = 6/189 (3%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1 MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPN-ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59 HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118
Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
PV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD+D
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTDND 175
Query: 248 FVSFFKRAK 256
FVSFF RAK
Sbjct: 176 FVSFFNRAK 184
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 4 |
| >sp|A2XMJ1|NTM1_ORYSI Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. indica GN=OsI_13745 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (637), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/217 (54%), Positives = 152/217 (70%), Gaps = 30/217 (13%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQE---------------------------- 100
M+ G DS+G+EF +A EMW +IG +
Sbjct: 1 MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEQEAGGGG 60
Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
K+ +WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF AR +HLV
Sbjct: 61 KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L + D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 257
LQDFTP+ GRYDVIW+QWCIG L DDDF+SFF RAK+
Sbjct: 179 LQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKI 215
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q10CT5|NTM1_ORYSJ Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os03g0780900 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 246 bits (628), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 118/217 (54%), Positives = 149/217 (68%), Gaps = 30/217 (13%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQ------------------------ 104
M+ G DS+G+EF +A EMW +IG +
Sbjct: 1 MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEEEAGGGG 60
Query: 105 ----WYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF AR +HLV
Sbjct: 61 KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L + D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 257
LQDFTP+ GRYDVIW+QWCIG L DDDF+SFF RAK+
Sbjct: 179 LQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKI 215
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|B1H2P7|NTM1A_XENTR N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Xenopus tropicalis GN=ntmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (379), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 100/161 (62%), Gaps = 8/161 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ L N N
Sbjct: 4 ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F +VD+++ FL A+ L E + N+
Sbjct: 64 MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 257
FC LQ+F+PE RYDVIW+QW IGHLTD+ V F KR +
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVDFLKRCSL 156
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q4KL94|NT1AA_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-A OS=Xenopus laevis GN=ntmt1-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 102/161 (63%), Gaps = 8/161 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V +VDG+LGG+G+++ VD+ GS+ FLQ L N N
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + N+
Sbjct: 64 A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 257
FC LQ+F+PE RYDVIW+QW IGHLTD+ V+F +R ++
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVNFLQRCRL 156
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q6NWX7|NTM1A_DANRE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Danio rerio GN=ntmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 96/157 (61%), Gaps = 9/157 (5%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E +T +Y E YW+ V +VDG+LGG+G+++ +DI GS+ FLQ L +
Sbjct: 7 EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VDL++ FLD AR L E+ + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256
LQDF P+ RYDVIW+QW IGHLTDD V F +R +
Sbjct: 118 GLQDFQPQPERYDVIWIQWVIGHLTDDHLVEFLRRCR 154
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q4KLE6|NT1AB_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-B OS=Xenopus laevis GN=ntmt1-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 102/161 (63%), Gaps = 9/161 (5%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V A+VDG+LGG+G+++ D+ S+ FLQ L + ++
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + +
Sbjct: 61 GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 257
FC LQ+F+PE RYDVIW+QW IGHLTD+ VSF +R K+
Sbjct: 115 FCCGLQEFSPEPSRYDVIWIQWVIGHLTDEHLVSFLQRCKL 155
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q55DH6|NTM1_DICDI Alpha N-terminal protein methyltransferase 1 OS=Dictyostelium discoideum GN=DDB_G0269658 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 115/188 (61%), Gaps = 17/188 (9%)
Query: 72 SGLDSDGKEFKNAEEMWREQI-GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNV 130
SGLD +G + N E++W++++ G+D + ++K WY+ YW+GVEA+VDG+LGG V
Sbjct: 24 SGLDGEGNTYINIEDLWKKELEGKDNKMEDK---WYKSADEYWKGVEATVDGMLGGLAQV 80
Query: 131 NEVDIKGSEAFLQMLL--SDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLE 187
+ +D+ S+ F+Q + +D P N +ALDCG+GIGR+ K L+ F VDL+E
Sbjct: 81 SPIDVVASKVFIQDFIKGTDSRPPINLN---LALDCGAGIGRVAKEFLLPIGFKNVDLVE 137
Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
FLD A+ + D ++ N++ V LQDFT E +YD IW+QW IGHL D D
Sbjct: 138 QNKLFLDKAK------SDNFKDDNRVENYYAVGLQDFTFEK-KYDCIWIQWVIGHLHDLD 190
Query: 248 FVSFFKRA 255
F+ F K+
Sbjct: 191 FIEFLKKC 198
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q9BV86|NTM1A_HUMAN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Homo sapiens GN=NTMT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 4 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E + N+
Sbjct: 63 S--CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256
FC LQDFTPE YDVIW+QW IGHLTD F +R K
Sbjct: 115 FCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCK 154
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q8R2U4|NTM1A_MOUSE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Mus musculus GN=Ntmt1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 140 bits (353), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ + +VDG+LGG+G+++ +D+ S FLQ L + PN
Sbjct: 4 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREG-PNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + N+
Sbjct: 63 S--CALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGK------RVRNY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256
FC LQDF+PE G YDVIW+QW IGHLTD F +R K
Sbjct: 115 FCCGLQDFSPEPGSYDVIWIQWVIGHLTDQHLAEFLRRCK 154
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1 (By similarity). Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 262 | ||||||
| 255586233 | 276 | Protein C9orf32, putative [Ricinus commu | 0.706 | 0.670 | 0.788 | 3e-84 | |
| 224115626 | 276 | predicted protein [Populus trichocarpa] | 0.706 | 0.670 | 0.740 | 7e-81 | |
| 356528088 | 336 | PREDICTED: alpha N-terminal protein meth | 0.832 | 0.648 | 0.641 | 9e-80 | |
| 297791381 | 335 | hypothetical protein ARALYDRAFT_494541 [ | 0.713 | 0.558 | 0.727 | 3e-78 | |
| 449433531 | 275 | PREDICTED: alpha N-terminal protein meth | 0.706 | 0.672 | 0.719 | 4e-78 | |
| 145358849 | 334 | methyltransferase [Arabidopsis thaliana] | 0.709 | 0.556 | 0.729 | 2e-77 | |
| 356510746 | 278 | PREDICTED: alpha N-terminal protein meth | 0.706 | 0.665 | 0.722 | 5e-77 | |
| 75321280 | 276 | RecName: Full=Alpha N-terminal protein m | 0.698 | 0.663 | 0.735 | 3e-76 | |
| 358348179 | 348 | Methyltransferase-like protein 11A [Medi | 0.706 | 0.531 | 0.677 | 3e-73 | |
| 9758698 | 252 | unnamed protein product [Arabidopsis tha | 0.629 | 0.654 | 0.760 | 6e-70 |
| >gi|255586233|ref|XP_002533771.1| Protein C9orf32, putative [Ricinus communis] gi|223526308|gb|EEF28616.1| Protein C9orf32, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 149/189 (78%), Positives = 164/189 (86%), Gaps = 4/189 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
MEV+G DSDG+EFKNAEEMWREQ G DG KKTQWYR+G+SYW+GVEASVDGVLGG+G
Sbjct: 1 MEVTGTDSDGREFKNAEEMWREQTG-DGT---KKTQWYRDGVSYWQGVEASVDGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
VN+ DIKGSEAFLQ L S+ F + +HLVALDCGSGIGR+TKNLLIRYFNEVDLLEP
Sbjct: 57 QVNDADIKGSEAFLQTLFSELFVDGGLGRHLVALDCGSGIGRVTKNLLIRYFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFLDAAR+SL ENHMA D HKATNFFC PLQ+FTP+ G YDVIWVQWCIGHLTDDDF
Sbjct: 117 VSHFLDAARDSLINENHMASDTHKATNFFCTPLQEFTPDAGHYDVIWVQWCIGHLTDDDF 176
Query: 249 VSFFKRAKV 257
VSFF RAK+
Sbjct: 177 VSFFMRAKI 185
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115626|ref|XP_002317082.1| predicted protein [Populus trichocarpa] gi|222860147|gb|EEE97694.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 140/189 (74%), Positives = 163/189 (86%), Gaps = 4/189 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
ME +G DSDG+EFKN +EMW E G+ KKTQWYR+G++YWEGVEASV+GVLGG+G
Sbjct: 1 MEAAGTDSDGREFKNPDEMWLEHTGD----TNKKTQWYRDGVAYWEGVEASVNGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VN+ D+KGSE FLQ LL++ F + ++HLVALDCGSGIGRITKNLLIR+FNEVDLLEP
Sbjct: 57 HVNDADVKGSEGFLQTLLAELFVDGGIDRHLVALDCGSGIGRITKNLLIRFFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFLDAARE+L ENHMA D HKATNF+CVPLQ+FTP+ GRYDVIWVQWCIGHLTDDDF
Sbjct: 117 VSHFLDAARENLVQENHMALDKHKATNFYCVPLQEFTPDAGRYDVIWVQWCIGHLTDDDF 176
Query: 249 VSFFKRAKV 257
VSFF RAK+
Sbjct: 177 VSFFNRAKI 185
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528088|ref|XP_003532637.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 302 bits (774), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 143/223 (64%), Positives = 172/223 (77%), Gaps = 5/223 (2%)
Query: 36 PTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED 95
P+ LL R L ++ + + P ++++S M+ +GLDSDG+EFK E+MWREQ G+
Sbjct: 27 PSFSLLSTRTRTLGLTASCYSSFSFPSYRKTSCMDAAGLDSDGREFKTPEDMWREQAGD- 85
Query: 96 GEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNA-R 154
KKTQWYR+G+SYWEGV+A++DGVLGGF NVNE DI SE FL +L S+RF A
Sbjct: 86 ---PSKKTQWYRDGVSYWEGVKANMDGVLGGFANVNEPDITCSEDFLNILFSERFHAADA 142
Query: 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214
+Q LV LDCGSGIGR+TKNLLIRYFNEVDLLEPVSHFL+ ARE+LA DMHKA
Sbjct: 143 RHQPLVVLDCGSGIGRVTKNLLIRYFNEVDLLEPVSHFLETARETLALGCQTNSDMHKAV 202
Query: 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 257
NF+CVPLQDFTP+T RYDVIW+QWCIGHLTD+DFVSFFKRAKV
Sbjct: 203 NFYCVPLQDFTPDTARYDVIWIQWCIGHLTDEDFVSFFKRAKV 245
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791381|ref|XP_002863575.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata] gi|297309410|gb|EFH39834.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 139/191 (72%), Positives = 161/191 (84%), Gaps = 4/191 (2%)
Query: 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
S +ME+ G+DS+GKEF + +EMWRE+IGE+G++ +KTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 57 SESMEICGVDSEGKEFNSVQEMWREEIGEEGDET-RKTQWYRDGVSYWEGVEASVDGVLG 115
Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDL 185
G+G+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDL
Sbjct: 116 GYGHVNDADIIGSEVFLKTLLQERLVNVGPNQHLVALDCGSGIGRITKNLLIRYFNEVDL 175
Query: 186 LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD 245
LEPV+ FLDAARE+LA HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD
Sbjct: 176 LEPVAQFLDAARENLAS---AGSKTHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTD 232
Query: 246 DDFVSFFKRAK 256
+DFVSFF AK
Sbjct: 233 NDFVSFFNCAK 243
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433531|ref|XP_004134551.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus] gi|449506765|ref|XP_004162842.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 136/189 (71%), Positives = 162/189 (85%), Gaps = 4/189 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
ME SG D+DG EFKNAEEMWRE +G K+T+WYREG+ YW+GVEASVDGVLGG+G
Sbjct: 1 MEGSGADTDGHEFKNAEEMWREHVG----NPTKRTEWYREGVGYWQGVEASVDGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VN+ DI GSE FL+ +L +RF A ++ LVALDCGSGIGR+TKNLLI+YFNEVDLLEP
Sbjct: 57 HVNDADILGSEVFLKSILVERFSFAGKDRPLVALDCGSGIGRVTKNLLIKYFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFL+AAR +LAPEN+ D+HKATNFFC+PLQ+FTP+ GRYDVIWVQWCIGHLTD+DF
Sbjct: 117 VSHFLEAARGNLAPENNGPSDLHKATNFFCMPLQEFTPDAGRYDVIWVQWCIGHLTDEDF 176
Query: 249 VSFFKRAKV 257
+SFFKRAK+
Sbjct: 177 ISFFKRAKL 185
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145358849|ref|NP_199258.3| methyltransferase [Arabidopsis thaliana] gi|332007727|gb|AED95110.1| methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 140/192 (72%), Positives = 161/192 (83%), Gaps = 6/192 (3%)
Query: 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
S++M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 56 SNSMDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLG 113
Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVD 184
G+G+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVD
Sbjct: 114 GYGHVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVD 173
Query: 185 LLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT 244
LLEPV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLT
Sbjct: 174 LLEPVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLT 230
Query: 245 DDDFVSFFKRAK 256
D+DFVSFF RAK
Sbjct: 231 DNDFVSFFNRAK 242
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510746|ref|XP_003524095.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 138/191 (72%), Positives = 157/191 (82%), Gaps = 6/191 (3%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M+ GLDSDG+EF AE+MWREQ G+ KKTQWYR+G+SYWEGV+A++DGVLGGF
Sbjct: 1 MDAGGLDSDGREFNTAEDMWREQAGD----PSKKTQWYRDGVSYWEGVKANMDGVLGGFA 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARN--NQHLVALDCGSGIGRITKNLLIRYFNEVDLL 186
NVNE DI SE FL +LLS+RFP A + Q LVALDCGSGIGR+TKNLLIRYFNEVDLL
Sbjct: 57 NVNEPDISCSEDFLNILLSERFPPAADARRQPLVALDCGSGIGRVTKNLLIRYFNEVDLL 116
Query: 187 EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDD 246
EPVSHFL+ ARE+LA DMHKA NF+CVPLQDFTP+T RYDVIW+QWCIGHLTD+
Sbjct: 117 EPVSHFLETARETLASGCQTNSDMHKAVNFYCVPLQDFTPDTARYDVIWIQWCIGHLTDE 176
Query: 247 DFVSFFKRAKV 257
DFVSFFK AKV
Sbjct: 177 DFVSFFKSAKV 187
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75321280|sp|Q5PP70.1|NTM1_ARATH RecName: Full=Alpha N-terminal protein methyltransferase 1; AltName: Full=X-Pro-Lys N-terminal protein methyltransferase 1; Short=NTM1 gi|56121880|gb|AAV74221.1| At5g44450 [Arabidopsis thaliana] gi|57222192|gb|AAW39003.1| At5g44450 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 139/189 (73%), Positives = 158/189 (83%), Gaps = 6/189 (3%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1 MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPN-ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59 HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118
Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
PV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD+D
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTDND 175
Query: 248 FVSFFKRAK 256
FVSFF RAK
Sbjct: 176 FVSFFNRAK 184
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358348179|ref|XP_003638126.1| Methyltransferase-like protein 11A [Medicago truncatula] gi|355504061|gb|AES85264.1| Methyltransferase-like protein 11A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 128/189 (67%), Positives = 155/189 (82%), Gaps = 4/189 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M+ G DS+G+E+K A+EMW+EQ G+ KKT WYR+G+SYWEGV A+VDGVLGG+
Sbjct: 1 MDAGGSDSNGREYKTADEMWKEQTGD----PNKKTLWYRQGVSYWEGVNATVDGVLGGYA 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VNE DI S+ FL+++LS+RF Q LVALDCGSGIGR+TKNLLIR+FNEVDLLEP
Sbjct: 57 DVNEPDITCSDDFLKIILSERFNADAKTQPLVALDCGSGIGRVTKNLLIRHFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFL+AARE+L + DMHKA NF+CVPLQDFTP+ GRYDVIW+QWCIGHLTDDDF
Sbjct: 117 VSHFLEAARETLTSGEYTNSDMHKAVNFYCVPLQDFTPDVGRYDVIWIQWCIGHLTDDDF 176
Query: 249 VSFFKRAKV 257
++FFKRAKV
Sbjct: 177 ITFFKRAKV 185
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9758698|dbj|BAB09152.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 270 bits (689), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 130/171 (76%), Positives = 143/171 (83%), Gaps = 6/171 (3%)
Query: 87 MWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLL 146
MWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLGG+G+VN+ DI GSE FL+ LL
Sbjct: 1 MWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYGHVNDADIIGSEVFLKTLL 58
Query: 147 SDRFPN-ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205
+R N NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV+ FLDAARE+LA
Sbjct: 59 QERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVAQFLDAARENLAS--- 115
Query: 206 MAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256
+ HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD+DFVSFF RAK
Sbjct: 116 AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTDNDFVSFFNRAK 166
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 262 | ||||||
| UNIPROTKB|B1H2P7 | 224 | ntmt1 "N-terminal Xaa-Pro-Lys | 0.583 | 0.683 | 0.447 | 1.1e-34 | |
| DICTYBASE|DDB_G0269658 | 270 | DDB_G0269658 "Methyltransferas | 0.656 | 0.637 | 0.416 | 1.7e-34 | |
| UNIPROTKB|Q4KL94 | 224 | ntmt1-a "N-terminal Xaa-Pro-Ly | 0.583 | 0.683 | 0.447 | 2.2e-34 | |
| ZFIN|ZDB-GENE-040426-2055 | 223 | ntmt1 "N-terminal Xaa-Pro-Lys | 0.564 | 0.663 | 0.464 | 7.4e-34 | |
| UNIPROTKB|Q4KLE6 | 223 | ntmt1-b "N-terminal Xaa-Pro-Ly | 0.580 | 0.681 | 0.434 | 2.5e-33 | |
| UNIPROTKB|F1MKD1 | 223 | METTL11A "Uncharacterized prot | 0.564 | 0.663 | 0.452 | 2.9e-32 | |
| UNIPROTKB|Q9BV86 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.564 | 0.663 | 0.445 | 3.7e-32 | |
| MGI|MGI:1913867 | 223 | Ntmt1 "N-terminal Xaa-Pro-Lys | 0.564 | 0.663 | 0.433 | 9.8e-32 | |
| UNIPROTKB|D2H163 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.564 | 0.663 | 0.445 | 1.6e-31 | |
| UNIPROTKB|Q2T9N3 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.564 | 0.663 | 0.445 | 2e-31 |
| UNIPROTKB|B1H2P7 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 72/161 (44%), Positives = 100/161 (62%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ L N N
Sbjct: 4 ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F +VD+++ FL A+ L E + N+
Sbjct: 64 MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 257
FC LQ+F+PE RYDVIW+QW IGHLTD+ V F KR +
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVDFLKRCSL 156
|
|
| DICTYBASE|DDB_G0269658 DDB_G0269658 "Methyltransferase-like protein 11A" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 77/185 (41%), Positives = 114/185 (61%)
Query: 72 SGLDSDGKEFKNAEEMWREQI-GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNV 130
SGLD +G + N E++W++++ G+D + ++K WY+ YW+GVEA+VDG+LGG V
Sbjct: 24 SGLDGEGNTYINIEDLWKKELEGKDNKMEDK---WYKSADEYWKGVEATVDGMLGGLAQV 80
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPV 189
+ +D+ S+ F+Q + N +L ALDCG+GIGR+ K L+ F VDL+E
Sbjct: 81 SPIDVVASKVFIQDFIKGTDSRPPINLNL-ALDCGAGIGRVAKEFLLPIGFKNVDLVEQN 139
Query: 190 SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFV 249
FLD A+ +N D ++ N++ V LQDFT E +YD IW+QW IGHL D DF+
Sbjct: 140 KLFLDKAKS----DNFK--DDNRVENYYAVGLQDFTFEK-KYDCIWIQWVIGHLHDLDFI 192
Query: 250 SFFKR 254
F K+
Sbjct: 193 EFLKK 197
|
|
| UNIPROTKB|Q4KL94 ntmt1-a "N-terminal Xaa-Pro-Lys N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 72/161 (44%), Positives = 102/161 (63%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V +VDG+LGG+G+++ VD+ GS+ FLQ L N N
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + N+
Sbjct: 64 A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 257
FC LQ+F+PE RYDVIW+QW IGHLTD+ V+F +R ++
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVNFLQRCRL 156
|
|
| ZFIN|ZDB-GENE-040426-2055 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 73/157 (46%), Positives = 96/157 (61%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E +T +Y E YW+ V +VDG+LGG+G+++ +DI GS+ FLQ L +
Sbjct: 7 EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VDL++ FLD AR L E+ + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256
LQDF P+ RYDVIW+QW IGHLTDD V F +R +
Sbjct: 118 GLQDFQPQPERYDVIWIQWVIGHLTDDHLVEFLRRCR 154
|
|
| UNIPROTKB|Q4KLE6 ntmt1-b "N-terminal Xaa-Pro-Lys N-methyltransferase 1-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 70/161 (43%), Positives = 102/161 (63%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V A+VDG+LGG+G+++ D+ S+ FLQ L + ++
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + +
Sbjct: 61 GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 257
FC LQ+F+PE RYDVIW+QW IGHLTD+ VSF +R K+
Sbjct: 115 FCCGLQEFSPEPSRYDVIWIQWVIGHLTDEHLVSFLQRCKL 155
|
|
| UNIPROTKB|F1MKD1 METTL11A "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 71/157 (45%), Positives = 95/157 (60%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + PN +
Sbjct: 7 EDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTSY- 64
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NFFC
Sbjct: 65 -ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNFFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256
LQDF+PE YDVIW+QW IGHLTD F +R K
Sbjct: 118 GLQDFSPEPQSYDVIWIQWVIGHLTDQHLAEFLRRCK 154
|
|
| UNIPROTKB|Q9BV86 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 70/157 (44%), Positives = 94/157 (59%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256
LQDFTPE YDVIW+QW IGHLTD F +R K
Sbjct: 118 GLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCK 154
|
|
| MGI|MGI:1913867 Ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 68/157 (43%), Positives = 94/157 (59%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +D+ S FLQ L + PN
Sbjct: 7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256
LQDF+PE G YDVIW+QW IGHLTD F +R K
Sbjct: 118 GLQDFSPEPGSYDVIWIQWVIGHLTDQHLAEFLRRCK 154
|
|
| UNIPROTKB|D2H163 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Ailuropoda melanoleuca (taxid:9646)] | Back alignment and assigned GO terms |
|---|
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 70/157 (44%), Positives = 93/157 (59%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 7 EDEKQFYLKAKTYWKEVPPTVDGMLGGYGHISSIDISSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL AR L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLIKARTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256
LQDF+PE YDVIW+QW IGHLTD F +R K
Sbjct: 118 GLQDFSPEPNSYDVIWIQWVIGHLTDQHLAEFLRRCK 154
|
|
| UNIPROTKB|Q2T9N3 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 70/157 (44%), Positives = 94/157 (59%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + N +
Sbjct: 7 EDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-QNKTGTSY- 64
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NFFC
Sbjct: 65 -ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNFFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256
LQDF+PE YDVIW+QW IGHLTD F +R K
Sbjct: 118 GLQDFSPEPQSYDVIWIQWVIGHLTDQHLAEFLRRCK 154
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 262 | |||
| pfam05891 | 217 | pfam05891, Methyltransf_PK, AdoMet dependent proli | 5e-84 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 0.001 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 0.002 |
| >gnl|CDD|218798 pfam05891, Methyltransf_PK, AdoMet dependent proline di-methyltransferase | Back alignment and domain information |
|---|
Score = 249 bits (639), Expect = 5e-84
Identities = 90/157 (57%), Positives = 116/157 (73%), Gaps = 8/157 (5%)
Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
+ Q+Y + I+YWEGV A+VDG+LGG+G+V+++D+ GS FL+ LL +R P +HLV
Sbjct: 1 DEEQFYSKAIAYWEGVSATVDGMLGGYGHVSDIDVNGSRNFLRRLLRERLPGK--RRHLV 58
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCG+GIGR+TKNLL+ F++VDL+EPV FL A+E LA K NFFCV
Sbjct: 59 ALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEGKK------KVGNFFCVG 112
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 257
LQDFTPE GRYD+IW+QWCIGHLTD+D V+F KR K
Sbjct: 113 LQDFTPEEGRYDLIWIQWCIGHLTDEDLVAFLKRCKG 149
|
This protein is expressed in the tail neuron PVT and in uterine cells in C. elegans [worm-base]. In Saccharomyces cerevisiae this is AdoMet dependent proline di-methyltransferase. This enzyme catalyzes the di-methylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues. The methyltransferases described here specifically recognise the N-terminal X-Pro-Lys sequence motif, and they may account for nearly all previously described eukaryotic protein N-terminal methylation reactions. A number of other yeast and human proteins also share the recognition motif and may be similarly modified. As with other methyltransferases, this family carries the characteristic GxGxG motif. Length = 217 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G G + + L R V ++ L AR+ + + +P
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAED-------LPF 53
Query: 222 QDFTPETGRYDVIWVQWCIGHLTD 245
D +DV+ + HL D
Sbjct: 54 PD-----ESFDVVVSSLVLHHLPD 72
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 19/115 (16%)
Query: 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205
L LD G G G +T+ L++ F + + + D + LA
Sbjct: 23 LLALLKEKGIFIPASVLDIGCGTGYLTR-ALLKRFPQAEFI-----ANDISAGMLA---Q 73
Query: 206 MAPDMHKATNFFCVPLQDFTPETGRYDVIW----VQWCIGHLTDDDFVSFFKRAK 256
+ + F C + E +D+I +QWC DD
Sbjct: 74 AKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC------DDLSQALSELA 122
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 262 | |||
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 100.0 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.76 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.73 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.72 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.71 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.71 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.71 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.7 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.7 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.69 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.68 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.68 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.67 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.67 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.67 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.64 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.64 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.62 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.62 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.61 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.61 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.61 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.61 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.6 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.6 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.6 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.59 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.58 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.56 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.56 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.56 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.55 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.55 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.55 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.54 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.53 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.52 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.52 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.51 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.5 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.5 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.5 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.49 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.49 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.49 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.48 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.47 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.47 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.46 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.45 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.45 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.44 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.43 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.43 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.43 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.42 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.41 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.39 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.38 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.37 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.37 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.35 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.35 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.33 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.31 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.31 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.29 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.28 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.26 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.26 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.25 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.24 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.23 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.22 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.22 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.21 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.2 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.2 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.19 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.19 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.15 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.13 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.12 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.1 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.1 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.08 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.08 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.07 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.07 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.06 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.06 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.06 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.05 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.05 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.05 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.04 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.03 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.03 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.0 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.0 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.99 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.99 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.99 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.98 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.96 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.95 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.94 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.93 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.92 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.91 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.91 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.9 | |
| PLN02366 | 308 | spermidine synthase | 98.88 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.85 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.85 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.85 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.85 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.85 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.85 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.84 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.83 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.83 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.82 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.81 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.81 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.81 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.8 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.79 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.79 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.79 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.77 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.76 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.76 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.76 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.75 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.75 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.75 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.75 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.74 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.73 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.71 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.71 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.7 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.69 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.69 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.68 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.65 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.62 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.6 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.58 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.54 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.48 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.46 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.46 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.42 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.41 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.4 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.39 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.39 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.37 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.35 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.34 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.32 | |
| PLN02823 | 336 | spermine synthase | 98.3 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.3 | |
| PLN02476 | 278 | O-methyltransferase | 98.3 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.3 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.29 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.28 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.28 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.24 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.22 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.21 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.2 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.18 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.15 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.14 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.14 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.12 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.1 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.1 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.06 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.04 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.03 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.03 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.01 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.99 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.97 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.94 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.91 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.91 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.9 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.9 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.9 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.88 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.85 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.84 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.8 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.78 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.74 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.73 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.73 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.7 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.65 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.64 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.6 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.6 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.52 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.48 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.44 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.41 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.39 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.37 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.37 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.35 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.27 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.27 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.23 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.22 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.2 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.18 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.16 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.13 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.12 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.1 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.07 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.03 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.02 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.84 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.79 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 96.76 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.75 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.33 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.23 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.13 | |
| PHA01634 | 156 | hypothetical protein | 96.07 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.05 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.79 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.66 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 95.64 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 95.6 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.56 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 95.33 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 95.25 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 95.01 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 94.95 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 94.92 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 94.9 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 94.7 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 94.68 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 94.65 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 94.38 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 94.33 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 94.25 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 94.05 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 94.03 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 93.85 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 93.39 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 93.35 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 93.29 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 92.88 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 92.13 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 92.03 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 91.5 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 90.96 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 90.41 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 89.87 | |
| PF08468 | 155 | MTS_N: Methyltransferase small domain N-terminal; | 89.6 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 89.23 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 88.88 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 88.37 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 87.62 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 87.26 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 87.04 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 86.85 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 85.52 | |
| PRK13699 | 227 | putative methylase; Provisional | 85.51 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 85.35 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 84.2 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 83.88 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 82.21 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 81.48 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 81.45 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 81.29 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 81.16 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 81.05 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 80.93 |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=263.13 Aligned_cols=153 Identities=52% Similarity=1.035 Sum_probs=121.9
Q ss_pred hhHhHhhHHhhhhccchhhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCC
Q 024811 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (262)
Q Consensus 102 ~~~wy~~~~~yW~~~~~~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~ 181 (262)
+..||..+.+||+++++++|||||||+++|.+|+.+|+.||..+.....+ +.....++||||||+||+|+.|+.+.|.
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 45899999999999999999999999999999999999999998764211 1234679999999999999999888999
Q ss_pred cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 182 ~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
+||+|||++.+++.|++.+... ..+..++++..+|+|.|+.++||+||+|||+.||||+++++||++|+..|+|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~~------~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~ 153 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGKD------NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP 153 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCCG------GCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE
T ss_pred EeEEeccCHHHHHHHHHHhccc------CCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999987542 2357899999999999987899999999999999999999999999999998
Q ss_pred C
Q 024811 262 T 262 (262)
Q Consensus 262 G 262 (262)
|
T Consensus 154 ~ 154 (218)
T PF05891_consen 154 N 154 (218)
T ss_dssp E
T ss_pred C
Confidence 5
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.9e-18 Score=158.05 Aligned_cols=205 Identities=16% Similarity=0.164 Sum_probs=140.5
Q ss_pred cCCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCCccCCHHHHHHHHhccc---cc----hhhhhhHhH
Q 024811 34 AKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED---GE----QQEKKTQWY 106 (262)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~g~ef~s~~e~W~~~~~~~---~~----~~~~~~~wy 106 (262)
....++|+.+||+|++++.+++++++.- ++++.|++.|.+++|.+ |..++.....+.. .. ..++...|-
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l--~~g~~i~~~G~~~~g~~--s~~k~~~~~~~~~~~~~ar~~~l~~~~~~~~ 150 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLL--PVGTDIFVVGENRSGVR--SAEKMLADYAPLNKIDSARRCGLYHGRLEKQ 150 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhC--CCCCEEEEEEeccccHH--HHHHHHHHhcCccccccceeEEEEEEecccc
Confidence 4567899999999999999999999863 35899999999999998 9999988754321 00 001111121
Q ss_pred h--hHHhhhhccch---hhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCC
Q 024811 107 R--EGISYWEGVEA---SVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (262)
Q Consensus 107 ~--~~~~yW~~~~~---~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~ 181 (262)
. ...+||..... .+...-| -++...++....+|...++.. ...+|||+|||+|.++..++ +.++
T Consensus 151 ~~~~~~~~~~~y~~~~l~i~~~pg---vFs~~~lD~gt~lLl~~l~~~-------~~g~VLDlGCG~G~ls~~la-~~~p 219 (342)
T PRK09489 151 PVFDADKFWKEYQVDGLTVKTLPG---VFSRDGLDVGSQLLLSTLTPH-------TKGKVLDVGCGAGVLSAVLA-RHSP 219 (342)
T ss_pred CCCcccccceeeecCCEEEEeCCC---CCCCCCCCHHHHHHHHhcccc-------CCCeEEEeccCcCHHHHHHH-HhCC
Confidence 1 12455653211 1111111 133344444445555544321 24589999999999999999 4443
Q ss_pred --cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCc---hhHHHHHHHHH
Q 024811 182 --EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAK 256 (262)
Q Consensus 182 --~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD---~el~~~l~~~~ 256 (262)
+|+++|+|+.|++.|++++... .-..+++..|+.+.. .++||+|+|+.++|+.-+ .....+|+++.
T Consensus 220 ~~~v~~vDis~~Al~~A~~nl~~n-------~l~~~~~~~D~~~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~ 290 (342)
T PRK09489 220 KIRLTLSDVSAAALESSRATLAAN-------GLEGEVFASNVFSDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAV 290 (342)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHc-------CCCCEEEEccccccc--CCCccEEEECCCccCCccccHHHHHHHHHHHH
Confidence 7999999999999999988642 113567788876542 368999999999987432 23458999999
Q ss_pred hhccCC
Q 024811 257 VNHSQT 262 (262)
Q Consensus 257 ~~LkPG 262 (262)
+.|+||
T Consensus 291 ~~Lkpg 296 (342)
T PRK09489 291 RHLNSG 296 (342)
T ss_pred HhcCcC
Confidence 999997
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=147.73 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=88.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||||||||.++..+++..+ .+|+++|+|+.|++.|++++... ...+++|+.+|++++++++++||+|.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~------~~~~i~fv~~dAe~LPf~D~sFD~vt 124 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK------GVQNVEFVVGDAENLPFPDNSFDAVT 124 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc------CccceEEEEechhhCCCCCCccCEEE
Confidence 588999999999999999994432 57999999999999999998643 22349999999999999999999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++.|++++|.+ ++|++++|+||||
T Consensus 125 ~~fglrnv~d~~--~aL~E~~RVlKpg 149 (238)
T COG2226 125 ISFGLRNVTDID--KALKEMYRVLKPG 149 (238)
T ss_pred eeehhhcCCCHH--HHHHHHHHhhcCC
Confidence 999999999998 9999999999997
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-17 Score=154.07 Aligned_cols=147 Identities=30% Similarity=0.455 Sum_probs=121.6
Q ss_pred hhHhHhhHHhhhhccchhhcc-ccCCCCCCcc---cchhhHHHHHHHHhhccC-C-CccCCCCceeeEeeccccHHHHHH
Q 024811 102 KTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDRF-P-NARNNQHLVALDCGSGIGRITKNL 175 (262)
Q Consensus 102 ~~~wy~~~~~yW~~~~~~~dg-vlgGy~~is~---~di~~s~~fL~~ll~~~l-~-~~~~~~~~~VLDlGcGtG~lt~~L 175 (262)
...||.++..||.....+.+| ++++|.+.+. .++.++..|+..+..++. . ..+.......+|||+|+|++++.+
T Consensus 116 ~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~l 195 (342)
T KOG3178|consen 116 TWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNL 195 (342)
T ss_pred hHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHH
Confidence 446789999999999999999 8999988777 899999999888765322 1 012333578999999999999999
Q ss_pred HHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHH
Q 024811 176 LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRA 255 (262)
Q Consensus 176 a~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~ 255 (262)
+. .|++|++|++....+..+...++ . .+..+-+|+..-.| +-|+||++|++||++|+++++||++|
T Consensus 196 l~-~fp~ik~infdlp~v~~~a~~~~-~---------gV~~v~gdmfq~~P---~~daI~mkWiLhdwtDedcvkiLknC 261 (342)
T KOG3178|consen 196 LS-KYPHIKGINFDLPFVLAAAPYLA-P---------GVEHVAGDMFQDTP---KGDAIWMKWILHDWTDEDCVKILKNC 261 (342)
T ss_pred HH-hCCCCceeecCHHHHHhhhhhhc-C---------CcceecccccccCC---CcCeEEEEeecccCChHHHHHHHHHH
Confidence 95 89999999999999999988873 1 25666677755444 35699999999999999999999999
Q ss_pred HhhccCC
Q 024811 256 KVNHSQT 262 (262)
Q Consensus 256 ~~~LkPG 262 (262)
+..|+||
T Consensus 262 ~~sL~~~ 268 (342)
T KOG3178|consen 262 KKSLPPG 268 (342)
T ss_pred HHhCCCC
Confidence 9999996
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-17 Score=152.41 Aligned_cols=98 Identities=18% Similarity=0.291 Sum_probs=84.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||||||+|.++..|+ +.+.+|++||+|++|++.|+++.... ....++.|+++++++++...++||+|+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La-~~g~~V~GID~s~~~i~~Ar~~~~~~-----~~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLA-RMGATVTGVDAVDKNVKIARLHADMD-----PVTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhc-----CcccceeEEecCHHHhhhccCCCCEEEE
Confidence 45699999999999999999 66778999999999999999875321 0123689999999988655579999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+++|++|++ .+++++.++|+||
T Consensus 205 ~~vLeHv~d~~--~~L~~l~r~LkPG 228 (322)
T PLN02396 205 LEVIEHVANPA--EFCKSLSALTIPN 228 (322)
T ss_pred hhHHHhcCCHH--HHHHHHHHHcCCC
Confidence 99999999998 9999999999997
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-17 Score=146.34 Aligned_cols=102 Identities=15% Similarity=0.040 Sum_probs=85.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||||.++..|+.... .+|+++|+|+.|++.|+++..... .....+++++++|++++++++++||+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~---~~~~~~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA---KSCYKNIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh---hccCCCeEEEEcccccCCCCCCCEeE
Confidence 3578999999999999999984433 379999999999999998753210 01234789999999998877679999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++++++||++|++ .+++++.++||||
T Consensus 149 V~~~~~l~~~~d~~--~~l~ei~rvLkpG 175 (261)
T PLN02233 149 ITMGYGLRNVVDRL--KAMQEMYRVLKPG 175 (261)
T ss_pred EEEecccccCCCHH--HHHHHHHHHcCcC
Confidence 99999999999887 9999999999997
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-18 Score=129.72 Aligned_cols=94 Identities=21% Similarity=0.409 Sum_probs=79.9
Q ss_pred eeEeeccccHHHHHHHHhcC-----CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 161 ALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 161 VLDlGcGtG~lt~~La~~~~-----~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
|||+|||+|+.+..++ +.+ .+++++|+|++|++.++++.... ...++|++.|++++++..++||+|+
T Consensus 1 ILDlgcG~G~~~~~l~-~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-------~~~~~~~~~D~~~l~~~~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALA-RRFDAGPSSRVIGVDISPEMLELAKKRFSED-------GPKVRFVQADARDLPFSDGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHH-HHS-----SEEEEEES-HHHHHHHHHHSHHT-------TTTSEEEESCTTCHHHHSSSEEEEE
T ss_pred CEEeecCCcHHHHHHH-HHhhhcccceEEEEECCHHHHHHHHHhchhc-------CCceEEEECCHhHCcccCCCeeEEE
Confidence 7999999999999999 554 78999999999999999987542 2378999999999876667999999
Q ss_pred hh-hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQ-WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~-~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++ .+++|++++++..+|+++.++|+||
T Consensus 73 ~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 73 CSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp E-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred EcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 95 4599999999999999999999996
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-17 Score=122.83 Aligned_cols=90 Identities=22% Similarity=0.299 Sum_probs=76.7
Q ss_pred eEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHh
Q 024811 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241 (262)
Q Consensus 162 LDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~ 241 (262)
||+|||+|+.+..|+.....+|+++|+|+.|++.++++... ..+++...|++++++++++||+|+++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCcccccccccccccccee
Confidence 89999999999999944378999999999999999998753 245699999999987778999999999999
Q ss_pred hcCchhHHHHHHHHHhhccCC
Q 024811 242 HLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 242 hltD~el~~~l~~~~~~LkPG 262 (262)
|+++.+ .+++++.++||||
T Consensus 72 ~~~~~~--~~l~e~~rvLk~g 90 (95)
T PF08241_consen 72 HLEDPE--AALREIYRVLKPG 90 (95)
T ss_dssp GSSHHH--HHHHHHHHHEEEE
T ss_pred eccCHH--HHHHHHHHHcCcC
Confidence 996666 9999999999996
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-17 Score=148.90 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=76.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||+|||||.++..|++... .+|+++|+|+.|++.|++++... ...+++++++|.+++++++++||+|
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~------~~~~i~~v~~da~~lp~~d~sfD~v 120 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE------GLQNIEFVQGDAEDLPFPDNSFDAV 120 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT------T--SEEEEE-BTTB--S-TT-EEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh------CCCCeeEEEcCHHHhcCCCCceeEE
Confidence 578999999999999999995443 37999999999999999998643 2348999999999998888999999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++.+++++|.+ ++|+++.|+||||
T Consensus 121 ~~~fglrn~~d~~--~~l~E~~RVLkPG 146 (233)
T PF01209_consen 121 TCSFGLRNFPDRE--RALREMYRVLKPG 146 (233)
T ss_dssp EEES-GGG-SSHH--HHHHHHHHHEEEE
T ss_pred EHHhhHHhhCCHH--HHHHHHHHHcCCC
Confidence 9999999999987 9999999999997
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=142.76 Aligned_cols=136 Identities=17% Similarity=0.187 Sum_probs=105.2
Q ss_pred HhhhhccchhhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCC
Q 024811 110 ISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV 189 (262)
Q Consensus 110 ~~yW~~~~~~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s 189 (262)
.+|=+..-..++-++| .+.++...++.+..++..+ ++.++.+|||||||+|..+..|+.....+|+++|+|
T Consensus 14 ~~y~~~~~~~~e~~~g-~~~~~~gg~~~~~~~l~~l--------~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s 84 (263)
T PTZ00098 14 NQYSDEGIKAYEFIFG-EDYISSGGIEATTKILSDI--------ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDIC 84 (263)
T ss_pred cccccccchhHHHHhC-CCCCCCCchHHHHHHHHhC--------CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECC
Confidence 4444444444456665 3556677766666666554 134678999999999999999985445689999999
Q ss_pred HHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 190 SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 190 ~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.|++.|+++... ..++.|.+.|+.+.+.++++||+||++.+++|++..+...+|+++.++|+||
T Consensus 85 ~~~~~~a~~~~~~--------~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG 149 (263)
T PTZ00098 85 EKMVNIAKLRNSD--------KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN 149 (263)
T ss_pred HHHHHHHHHHcCc--------CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999998642 2368999999987765557999999999999998666669999999999997
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-17 Score=146.13 Aligned_cols=96 Identities=19% Similarity=0.276 Sum_probs=85.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||.|.++++++ +.+.+|+++|+|+++|+.|+.+..+ ..-.++|.+...+++....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mA-r~Ga~VtgiD~se~~I~~Ak~ha~e-------~gv~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLA-RLGASVTGIDASEKPIEVAKLHALE-------SGVNIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHH-HCCCeeEEecCChHHHHHHHHhhhh-------ccccccchhhhHHHHHhcCCCccEEEE
Confidence 47899999999999999999 7789999999999999999998643 233577888888888655479999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+++|++|++ .|++.|.+++|||
T Consensus 131 mEVlEHv~dp~--~~~~~c~~lvkP~ 154 (243)
T COG2227 131 MEVLEHVPDPE--SFLRACAKLVKPG 154 (243)
T ss_pred hhHHHccCCHH--HHHHHHHHHcCCC
Confidence 99999999999 9999999999997
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=138.07 Aligned_cols=98 Identities=18% Similarity=0.143 Sum_probs=85.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|+.+..|+ +.+.+|+++|+|+.|++.+++++... ...++++++.|+.+++++ ++||+|+|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La-~~g~~V~gvD~S~~~i~~a~~~~~~~------~~~~v~~~~~d~~~~~~~-~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLA-ANGFDVTAWDKNPMSIANLERIKAAE------NLDNLHTAVVDLNNLTFD-GEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHc------CCCcceEEecChhhCCcC-CCcCEEEE
Confidence 46799999999999999999 55779999999999999999987542 224588999999887664 58999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++||+++.+...+++++.++|+||
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~Lkpg 127 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPG 127 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999888889999999999997
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.2e-16 Score=141.34 Aligned_cols=208 Identities=17% Similarity=0.130 Sum_probs=140.8
Q ss_pred CCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCCccCCHHHHHHHHhccccc--hhhhhhHhHhh----
Q 024811 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGE--QQEKKTQWYRE---- 108 (262)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~g~ef~s~~e~W~~~~~~~~~--~~~~~~~wy~~---- 108 (262)
.+.++|+.+||.|++++.++|++.+.. .+++.|.+-|.+.+|.+ |..+|-.+-.+.... .-++...||-.
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~--~~g~~i~v~g~~~~g~~--s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARL--PPGGEIVVVGEKRDGVR--SAEKMLEKYGGPTKTDSARHCMRLHYYSENPP 112 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhC--CCCCeEEEEecccchHH--HHHHHHHHhcCccccchHhhcceeEeecCCCC
Confidence 678999999999999999999999964 35899999999999998 888887765554100 11222223221
Q ss_pred ---HHhhhhccchhhcccc-CCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCC--c
Q 024811 109 ---GISYWEGVEASVDGVL-GGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--E 182 (262)
Q Consensus 109 ---~~~yW~~~~~~~dgvl-gGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~--~ 182 (262)
...+|.....-.+.-| .--+-+|...++..+++|.+.++.. ...+|||+|||.|.++..|+ +.++ +
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~-------~~~~vlDlGCG~Gvlg~~la-~~~p~~~ 184 (300)
T COG2813 113 PFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPPD-------LGGKVLDLGCGYGVLGLVLA-KKSPQAK 184 (300)
T ss_pred cccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCcc-------CCCcEEEeCCCccHHHHHHH-HhCCCCe
Confidence 1333332221011000 0012245556665666666655522 34599999999999999999 5555 8
Q ss_pred EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCc--hhH-HHHHHHHHhhc
Q 024811 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD--DDF-VSFFKRAKVNH 259 (262)
Q Consensus 183 V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD--~el-~~~l~~~~~~L 259 (262)
++++|.|...|+.|++++..- ...+..++.+|+.+-.. ++||+|+||.+||-=-+ ..+ .++|....+.|
T Consensus 185 vtmvDvn~~Av~~ar~Nl~~N------~~~~~~v~~s~~~~~v~--~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L 256 (300)
T COG2813 185 LTLVDVNARAVESARKNLAAN------GVENTEVWASNLYEPVE--GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHL 256 (300)
T ss_pred EEEEecCHHHHHHHHHhHHHc------CCCccEEEEeccccccc--ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhh
Confidence 999999999999999998642 22233566666665332 48999999999874332 222 26999999999
Q ss_pred cCC
Q 024811 260 SQT 262 (262)
Q Consensus 260 kPG 262 (262)
++|
T Consensus 257 ~~g 259 (300)
T COG2813 257 KPG 259 (300)
T ss_pred ccC
Confidence 987
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-16 Score=145.28 Aligned_cols=100 Identities=18% Similarity=0.252 Sum_probs=86.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||||||+|.++..|+...+.+|++||+|+.|++.|+++.... ....+++|+++|+.++++++++||+||
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~-----g~~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ-----GLSDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEEcCcccCCCCCCCccEEE
Confidence 456799999999999999999555679999999999999999876532 122468999999998876668999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..+++|++|.. .+|+++.++|+||
T Consensus 192 s~~~~~h~~d~~--~~l~e~~rvLkpG 216 (340)
T PLN02244 192 SMESGEHMPDKR--KFVQELARVAAPG 216 (340)
T ss_pred ECCchhccCCHH--HHHHHHHHHcCCC
Confidence 999999999877 9999999999997
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-16 Score=123.35 Aligned_cols=99 Identities=20% Similarity=0.147 Sum_probs=81.2
Q ss_pred CceeeEeeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCC-CCCCCCCCccchhh
Q 024811 158 HLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVIW 235 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~-~~~~~~~~~yDlI~ 235 (262)
+.+|||+|||+|+++..+++. .+.+|++||+|+.|++.|++++... ....+++|++.|+ ..+... ++||+|+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~-~~~D~v~ 75 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE-----GLSDRITFVQGDAEFDPDFL-EPFDLVI 75 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT-----TTTTTEEEEESCCHGGTTTS-SCEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEECccccCcccC-CCCCEEE
Confidence 678999999999999999952 6778999999999999999998332 1346899999999 444433 5799999
Q ss_pred hhh-HHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 236 VQW-CIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~-vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
+.+ +++++.+ ++..++++++.+.|+||
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 104 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPG 104 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCC
Confidence 999 6665654 46668999999999996
|
... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.7e-16 Score=136.27 Aligned_cols=89 Identities=10% Similarity=0.110 Sum_probs=77.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||||.++..|+.....+|+++|+|++|++.|+++. .++++|++++++++++||+|+|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------DKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------ceEEechhhCCCCCCCEEEEEe
Confidence 36799999999999999999443468999999999999998742 3567888888777789999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
++++||++|++ ++++++.++|+|
T Consensus 117 ~~~l~~~~d~~--~~l~e~~RvLkp 139 (226)
T PRK05785 117 SFALHASDNIE--KVIAEFTRVSRK 139 (226)
T ss_pred cChhhccCCHH--HHHHHHHHHhcC
Confidence 99999999988 999999999998
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-16 Score=139.61 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=78.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..|+... ..+|+++|+|+.|++.|++. +++|+++|++++.+ .++||+|+
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~~~~-~~~fD~v~ 94 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVRDWKP-KPDTDVVV 94 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChhhCCC-CCCceEEE
Confidence 56899999999999999999442 35799999999999999763 46789999998854 46999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+.++||++|++ .+++++.++|+||
T Consensus 95 ~~~~l~~~~d~~--~~l~~~~~~Lkpg 119 (255)
T PRK14103 95 SNAALQWVPEHA--DLLVRWVDELAPG 119 (255)
T ss_pred EehhhhhCCCHH--HHHHHHHHhCCCC
Confidence 999999999877 9999999999997
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-15 Score=137.08 Aligned_cols=95 Identities=17% Similarity=0.294 Sum_probs=81.5
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCc----ceEEEEcCCCCCCCCCCccch
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK----ATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~----~v~f~~~d~~~~~~~~~~yDl 233 (262)
+.+|||+|||+|-+|++|+ +.+.+|++||+|+.|++.|++.. ...+. ... +++|.+.+.+++. +.||+
T Consensus 90 g~~ilDvGCGgGLLSepLA-rlga~V~GID~s~~~V~vA~~h~-~~dP~---~~~~~~y~l~~~~~~~E~~~---~~fDa 161 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLA-RLGAQVTGIDASDDMVEVANEHK-KMDPV---LEGAIAYRLEYEDTDVEGLT---GKFDA 161 (282)
T ss_pred CceEEEeccCccccchhhH-hhCCeeEeecccHHHHHHHHHhh-hcCch---hccccceeeehhhcchhhcc---cccce
Confidence 4679999999999999999 88999999999999999999983 22221 122 4678888888874 35999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|+.+++|+.|++ .|+..|.+.|+||
T Consensus 162 VvcsevleHV~dp~--~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 162 VVCSEVLEHVKDPQ--EFLNCLSALLKPN 188 (282)
T ss_pred eeeHHHHHHHhCHH--HHHHHHHHHhCCC
Confidence 99999999999999 9999999999996
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.4e-16 Score=137.33 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=84.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++.... ...+++++++|++++. ..+++||+|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la-~~g~~v~~vD~s~~~l~~a~~~~~~~g-----~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLA-ELGHQVILCDLSAEMIQRAKQAAEAKG-----VSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhcC-----CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 46799999999999999999 567899999999999999999875421 1246889999998774 2346899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..+++|+++++ .+|+++.++|+||
T Consensus 118 ~~~vl~~~~~~~--~~l~~~~~~Lkpg 142 (255)
T PRK11036 118 FHAVLEWVADPK--SVLQTLWSVLRPG 142 (255)
T ss_pred ehhHHHhhCCHH--HHHHHHHHHcCCC
Confidence 999999999988 9999999999997
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=125.97 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=82.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yD 232 (262)
+..+|||+|||+|.++..|+... ..++++||.|+.|++.|++.+... ...++.|+++|+++++ .+ +.||
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~------~~~ni~~~~~d~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL------GLDNIEFIQGDIEDLPQELE-EKFD 75 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT------TSTTEEEEESBTTCGCGCSS-TTEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc------cccccceEEeehhccccccC-CCee
Confidence 46799999999999999999433 458999999999999999987543 2348999999999975 33 6899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++..+++|+++++ .+|+++.+.|+||
T Consensus 76 ~I~~~~~l~~~~~~~--~~l~~~~~~lk~~ 103 (152)
T PF13847_consen 76 IIISNGVLHHFPDPE--KVLKNIIRLLKPG 103 (152)
T ss_dssp EEEEESTGGGTSHHH--HHHHHHHHHEEEE
T ss_pred EEEEcCchhhccCHH--HHHHHHHHHcCCC
Confidence 999999999999998 9999999999975
|
... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=135.83 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=81.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
.++.+|||+|||+|.++..|+... ..+|++||+|+.|++.|++++. ++.|+.+|+.++.+. .+||+|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~d~~~~~~~-~~fD~v 97 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------DCQFVEADIASWQPP-QALDLI 97 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------CCeEEECchhccCCC-CCccEE
Confidence 357899999999999999999543 3589999999999999998752 578999999887654 599999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|+.++||++|.. .+|+++.++|+||
T Consensus 98 ~~~~~l~~~~d~~--~~l~~~~~~Lkpg 123 (258)
T PRK01683 98 FANASLQWLPDHL--ELFPRLVSLLAPG 123 (258)
T ss_pred EEccChhhCCCHH--HHHHHHHHhcCCC
Confidence 9999999999877 9999999999997
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-15 Score=132.37 Aligned_cols=99 Identities=8% Similarity=0.132 Sum_probs=83.9
Q ss_pred CCceeeEeeccccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~---~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
++.+|||+|||+|.++..|+.. ...+|+++|+|+.|++.|++++.... ...+++++++|+.+++++ .||+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-----~~~~v~~~~~d~~~~~~~--~~D~ 128 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-----APTPVDVIEGDIRDIAIE--NASM 128 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-----CCCCeEEEeCChhhCCCC--CCCE
Confidence 4679999999999999999842 23589999999999999999985421 123689999999988653 5999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++++++||+++++...+++++.+.|+||
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpG 157 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPG 157 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999887778999999999997
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=135.87 Aligned_cols=92 Identities=16% Similarity=0.251 Sum_probs=81.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ ..+.+|+++|+|+.|++.|+++.. ...++++|++++++.+++||+|+|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~-~~~~~v~~~D~s~~~l~~a~~~~~-----------~~~~~~~d~~~~~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWR-ERGSQVTALDLSPPMLAQARQKDA-----------ADHYLAGDIESLPLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHH-HcCCeEEEEECCHHHHHHHHhhCC-----------CCCEEEcCcccCcCCCCcEEEEEE
Confidence 46789999999999999998 567899999999999999998752 246889999988766678999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|+.|.+ .+|.++.++|+||
T Consensus 110 ~~~l~~~~d~~--~~l~~~~~~Lk~g 133 (251)
T PRK10258 110 NLAVQWCGNLS--TALRELYRVVRPG 133 (251)
T ss_pred CchhhhcCCHH--HHHHHHHHHcCCC
Confidence 99999999987 9999999999996
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-14 Score=135.06 Aligned_cols=205 Identities=13% Similarity=0.164 Sum_probs=128.9
Q ss_pred CCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCC-ccCCHHHHHHHHhccccchhhhhhHhHh----hH
Q 024811 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGK-EFKNAEEMWREQIGEDGEQQEKKTQWYR----EG 109 (262)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~g~-ef~s~~e~W~~~~~~~~~~~~~~~~wy~----~~ 109 (262)
.+.++|+.+|+.|+++.-++.+.++... ++..++-|.+..|. . +..+.-.+.+++ .. ....|.. .+
T Consensus 106 ~~d~vl~~~PK~~~~l~~~l~~l~~~l~---~~~~ii~g~~~k~i~~--~~~~~~~k~l~~-~~---~~~~~~kaR~~~~ 176 (378)
T PRK15001 106 QPGVVLIKVPKTLALLEQQLRALRKVVT---SDTRIIAGAKARDIHT--STLELFEKVLGP-TT---TTLAWKKARLINC 176 (378)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhhCC---CCCEEEEEEecCCCcH--HHHHHHHHHhCc-cc---hhhhhhhhhheec
Confidence 4679999999999999999998877542 44445566665544 3 444455555554 11 1111110 00
Q ss_pred Hhh------------hhc--cchhhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHH
Q 024811 110 ISY------------WEG--VEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNL 175 (262)
Q Consensus 110 ~~y------------W~~--~~~~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~L 175 (262)
.-| |.- ..-++.. +. +-+|...++....+|...++.. ...+|||+|||+|.++..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--gVFs~~~LD~GtrllL~~lp~~-------~~~~VLDLGCGtGvi~i~l 246 (378)
T PRK15001 177 TFNEPPLADAPQTVSWKLEGTDWTIHN-HA--NVFSRTGLDIGARFFMQHLPEN-------LEGEIVDLGCGNGVIGLTL 246 (378)
T ss_pred cCCCCCCcCCCceeEEEEcCceEEEEe-cC--CccCCCCcChHHHHHHHhCCcc-------cCCeEEEEeccccHHHHHH
Confidence 111 110 0001100 01 1234444555556665555421 2468999999999999999
Q ss_pred HHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhc---CchhHHHH
Q 024811 176 LIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHL---TDDDFVSF 251 (262)
Q Consensus 176 a~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hl---tD~el~~~ 251 (262)
++.. ..+|+++|.|+.|++.|++++..... ....+++|+..|..+..+ ..+||+|+||.++|.. ++....++
T Consensus 247 a~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~---~~~~~v~~~~~D~l~~~~-~~~fDlIlsNPPfh~~~~~~~~ia~~l 322 (378)
T PRK15001 247 LDKNPQAKVVFVDESPMAVASSRLNVETNMP---EALDRCEFMINNALSGVE-PFRFNAVLCNPPFHQQHALTDNVAWEM 322 (378)
T ss_pred HHhCCCCEEEEEECCHHHHHHHHHHHHHcCc---ccCceEEEEEccccccCC-CCCEEEEEECcCcccCccCCHHHHHHH
Confidence 9443 34799999999999999998753210 112367888888865433 2589999999888653 34444579
Q ss_pred HHHHHhhccCC
Q 024811 252 FKRAKVNHSQT 262 (262)
Q Consensus 252 l~~~~~~LkPG 262 (262)
|+.+.+.|+||
T Consensus 323 ~~~a~~~LkpG 333 (378)
T PRK15001 323 FHHARRCLKIN 333 (378)
T ss_pred HHHHHHhcccC
Confidence 99999999997
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-15 Score=128.94 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=78.2
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|..+..|+... +.++++||+|+.|++.|++++. .+.++++|+.+ +..+++||+|+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------~~~~~~~d~~~-~~~~~sfD~V~ 110 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------NINIIQGSLFD-PFKDNFFDLVL 110 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------CCcEEEeeccC-CCCCCCEEEEE
Confidence 46789999999999999998442 5689999999999999998752 45778888887 44457999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhcc
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHS 260 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~Lk 260 (262)
++.+++|++++++.++++++.++++
T Consensus 111 ~~~vL~hl~p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 111 TKGVLIHINPDNLPTAYRELYRCSN 135 (204)
T ss_pred ECChhhhCCHHHHHHHHHHHHhhcC
Confidence 9999999987778899999999875
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-15 Score=130.05 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=81.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|+++..|+ +.+.+|+++|+|+.|++.++++.... .. .+.+...|+..++++ ++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la-~~g~~V~~iD~s~~~l~~a~~~~~~~------~~-~v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLS-LAGYDVRAWDHNPASIASVLDMKARE------NL-PLRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHHHh------CC-CceeEeccchhcccc-CCCCEEEE
Confidence 35799999999999999999 55678999999999999999876432 11 367777888766554 58999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++||+++++...+++++.++|+||
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~Lkpg 126 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPG 126 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCC
Confidence 99999998887789999999999997
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-17 Score=124.50 Aligned_cols=95 Identities=23% Similarity=0.315 Sum_probs=60.6
Q ss_pred eEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHH
Q 024811 162 LDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCI 240 (262)
Q Consensus 162 LDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl 240 (262)
||+|||+|+++..++... ..+++++|+|+.|++.|++++...... ....+++...+..+..+. ++||+|++..++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND---NFERLRFDVLDLFDYDPP-ESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC-----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc---ceeEEEeecCChhhcccc-cccceehhhhhH
Confidence 799999999999999442 558999999999999999988653210 111233333333333222 599999999999
Q ss_pred hhcCchhHHHHHHHHHhhccCC
Q 024811 241 GHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 241 ~hltD~el~~~l~~~~~~LkPG 262 (262)
||+.+.+ .++++++++|+||
T Consensus 77 ~~l~~~~--~~l~~~~~~L~pg 96 (99)
T PF08242_consen 77 HHLEDIE--AVLRNIYRLLKPG 96 (99)
T ss_dssp S--S-HH--HHHHHHTTT-TSS
T ss_pred hhhhhHH--HHHHHHHHHcCCC
Confidence 9996655 9999999999997
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.7e-15 Score=128.08 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=84.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..++.... .+|+++|+|+.|++.|++++... ...+++++++|+++++++.++||+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~fD~ 117 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA------GLHNVELVHGNAMELPFDDNSFDY 117 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEEechhcCCCCCCCccE
Confidence 3577999999999999999995432 48999999999999999987532 234789999999887655579999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++.++++|+++.. ++++++.++|+||
T Consensus 118 V~~~~~l~~~~~~~--~~l~~~~~~Lk~g 144 (231)
T TIGR02752 118 VTIGFGLRNVPDYM--QVLREMYRVVKPG 144 (231)
T ss_pred EEEecccccCCCHH--HHHHHHHHHcCcC
Confidence 99999999999887 9999999999997
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=131.88 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=87.0
Q ss_pred ccchhhH-HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCC
Q 024811 132 EVDIKGS-EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM 210 (262)
Q Consensus 132 ~~di~~s-~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~ 210 (262)
+.+++.. .+-+..++. ++ ++.++.+|||||||+|.++..++++.+.+|++|.+|++..+.+++++..+. .
T Consensus 40 ~~~Le~AQ~~k~~~~~~-~~---~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~g-----l 110 (273)
T PF02353_consen 40 DDTLEEAQERKLDLLCE-KL---GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAG-----L 110 (273)
T ss_dssp T--HHHHHHHHHHHHHT-TT---T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCST-----S
T ss_pred hhhHHHHHHHHHHHHHH-Hh---CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcC-----C
Confidence 4445443 333445444 33 467899999999999999999997768899999999999999999987542 2
Q ss_pred CcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 211 HKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 211 ~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
...+++...|..+++. +||.|+|-.++.|+..+....||+++.++|+||
T Consensus 111 ~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 111 EDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred CCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCC
Confidence 3468899999887743 899999999999999888889999999999997
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=128.51 Aligned_cols=99 Identities=9% Similarity=0.168 Sum_probs=84.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~---~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
++.+|||+|||+|..+..+++.. ..+|+++|+|+.|++.|++++.... ...+++++++|+.+++++ .+|+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~--~~d~ 125 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-----SEIPVEILCNDIRHVEIK--NASM 125 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-----CCCCeEEEECChhhCCCC--CCCE
Confidence 46789999999999999999432 3479999999999999999875421 123689999999988653 5999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++++++||+++++...+|+++.++|+||
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~Lkpg 154 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPN 154 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999888779999999999997
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-15 Score=130.92 Aligned_cols=96 Identities=22% Similarity=0.279 Sum_probs=77.6
Q ss_pred CCceeeEeeccccHHHHHHHHh---cC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~---~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~y 231 (262)
++.+|||+|||+|.++..|+.. .+ .+|+++|+|+.|++.|+++... .++.+...+..+++..+++|
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCCCc
Confidence 4679999999999999998832 12 3899999999999999987532 24566666655554444799
Q ss_pred chhhhhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
|+|+|+.++||++|+++..+|+++.++++.
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~~ 160 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALARR 160 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcCe
Confidence 999999999999999888999999998864
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-14 Score=139.11 Aligned_cols=98 Identities=18% Similarity=0.140 Sum_probs=84.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..|+.....+|+++|+|+.|++.|+++... ...++.|+++|+.+.++++++||+|+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~-------~~~~v~~~~~d~~~~~~~~~~fD~I~ 337 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG-------RKCSVEFEVADCTKKTYPDNSFDVIY 337 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc-------CCCceEEEEcCcccCCCCCCCEEEEE
Confidence 35679999999999999999955566899999999999999987642 12368999999988765557899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|..+++|++|++ .+|+++.++|+||
T Consensus 338 s~~~l~h~~d~~--~~l~~~~r~Lkpg 362 (475)
T PLN02336 338 SRDTILHIQDKP--ALFRSFFKWLKPG 362 (475)
T ss_pred ECCcccccCCHH--HHHHHHHHHcCCC
Confidence 999999999988 9999999999997
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=132.67 Aligned_cols=96 Identities=18% Similarity=0.132 Sum_probs=83.3
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
+.+|||+|||+|+.+..|+ ..+.+|+++|.|+.|++.+++++... ..++++.+.|+.+... +++||+|+++
T Consensus 121 ~~~vLDlGcG~G~~~~~la-~~g~~V~avD~s~~ai~~~~~~~~~~-------~l~v~~~~~D~~~~~~-~~~fD~I~~~ 191 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLA-LLGFDVTAVDINQQSLENLQEIAEKE-------NLNIRTGLYDINSASI-QEEYDFILST 191 (287)
T ss_pred CCCEEEeCCCCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHc-------CCceEEEEechhcccc-cCCccEEEEc
Confidence 4599999999999999999 55778999999999999999887532 1267888888887655 4689999999
Q ss_pred hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 238 WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++||++++++..+++++.++|+||
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~Lkpg 216 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPG 216 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999888889999999999997
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.5e-15 Score=127.77 Aligned_cols=93 Identities=19% Similarity=0.278 Sum_probs=83.5
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
.....+|.|+|||+|+.|+.|+ +++ ..+++||-|++||+.|++++ ++.+|..+|+.+|.|+ .+.|
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~-~RwP~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~w~p~-~~~d 94 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLA-RRWPDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRTWKPE-QPTD 94 (257)
T ss_pred ccccceeeecCCCCCHHHHHHH-HhCCCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhhcCCC-Cccc
Confidence 3457899999999999999999 554 47999999999999999876 3789999999999986 6999
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++|-+|++++|.- .+|.++-..|.||
T Consensus 95 llfaNAvlqWlpdH~--~ll~rL~~~L~Pg 122 (257)
T COG4106 95 LLFANAVLQWLPDHP--ELLPRLVSQLAPG 122 (257)
T ss_pred hhhhhhhhhhccccH--HHHHHHHHhhCCC
Confidence 999999999999977 8999999999997
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.8e-15 Score=126.65 Aligned_cols=96 Identities=25% Similarity=0.338 Sum_probs=79.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
...++||+|||+|.+|..|+ .++.+++++|.|+..|+.|++++.. .++++|+..|+.++.|+ ++||+|++
T Consensus 43 ry~~alEvGCs~G~lT~~LA-~rCd~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~~P~-~~FDLIV~ 112 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLA-PRCDRLLAVDISPRALARARERLAG--------LPHVEWIQADVPEFWPE-GRFDLIVL 112 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHG-GGEEEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---S-S-EEEEEE
T ss_pred ccceeEecCCCccHHHHHHH-HhhCceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCCCCC-CCeeEEEE
Confidence 45789999999999999999 7789999999999999999999864 35899999999998775 79999999
Q ss_pred hhHHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
+.+++||++ +++..++.++..+|+||
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pg 139 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPG 139 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCC
Confidence 999999997 57889999999999986
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-14 Score=128.48 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=89.4
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
++.++.+|||||||+|.+++.+++++..+|++|++|+++.+.+++++... ....++++...|+.++. ++||-
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~-----gl~~~v~v~l~d~rd~~---e~fDr 140 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR-----GLEDNVEVRLQDYRDFE---EPFDR 140 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc-----CCCcccEEEeccccccc---cccce
Confidence 47789999999999999999999776789999999999999999988653 12347899999999884 35999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|-..++|+..+....||+++.+.|+||
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPG 169 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence 99999999999987779999999999997
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.6e-14 Score=123.58 Aligned_cols=105 Identities=10% Similarity=-0.053 Sum_probs=83.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccccccc------CCCCCcceEEEEcCCCCCCCC-CC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPE-TG 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~------~~~~~~~v~f~~~d~~~~~~~-~~ 229 (262)
++.+|||+|||.|+.+..|+ +.+.+|++||+|+.+++.+.+........ ......+++++++|+.++.+. .+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA-~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLA-EQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHH-hCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 46799999999999999999 77889999999999999864422110000 000134689999999998653 35
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+||+||-..+++|++.++...+++.+.++|+||
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg 145 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPG 145 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence 799999999999999888788999999999997
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-14 Score=136.71 Aligned_cols=97 Identities=21% Similarity=0.342 Sum_probs=82.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC--CCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~--~~~~~~~yDlI 234 (262)
++.+|||||||+|+++..|+ +.+.+|+++|+|+.|++.+++... ...++.++++|+.+ ++++.++||+|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la-~~~~~v~giD~s~~~l~~a~~~~~--------~~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELA-KKAGQVIALDFIESVIKKNESING--------HYKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHH-hhCCEEEEEeCCHHHHHHHHHHhc--------cCCceEEEEecccccccCCCCCCEEEE
Confidence 45689999999999999999 567899999999999998876321 13478899999863 44445789999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
||+++++|++++++..+++++.+.|+||
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~g 135 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVG 135 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999988889999999999997
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-14 Score=127.38 Aligned_cols=99 Identities=20% Similarity=0.092 Sum_probs=83.8
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|..+..++...+. +|+++|+|+.|++.|+++.... ...+++|+.+|+++++..++.||+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~------g~~~v~~~~~d~~~l~~~~~~fD~ 149 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA------GYTNVEFRLGEIEALPVADNSVDV 149 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc------CCCCEEEEEcchhhCCCCCCceeE
Confidence 45789999999999998887744443 6999999999999999987532 224788999999987665578999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+++.+++|+++.. .+|+++.++|+||
T Consensus 150 Vi~~~v~~~~~d~~--~~l~~~~r~LkpG 176 (272)
T PRK11873 150 IISNCVINLSPDKE--RVFKEAFRVLKPG 176 (272)
T ss_pred EEEcCcccCCCCHH--HHHHHHHHHcCCC
Confidence 99999999998877 8999999999997
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-14 Score=123.02 Aligned_cols=97 Identities=20% Similarity=0.115 Sum_probs=79.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+++++||+|||.||.+..|+ +.+-.|+++|.|+.+++.+++..... .-.++..+.|+.++.++ +.||+|+|
T Consensus 30 ~~g~~LDlgcG~GRNalyLA-~~G~~VtAvD~s~~al~~l~~~a~~~-------~l~i~~~~~Dl~~~~~~-~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLA-SQGFDVTAVDISPVALEKLQRLAEEE-------GLDIRTRVADLNDFDFP-EEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHH-HTT-EEEEEESSHHHHHHHHHHHHHT-------T-TEEEEE-BGCCBS-T-TTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHhhc-------CceeEEEEecchhcccc-CCcCEEEE
Confidence 47799999999999999999 66778999999999999988765331 22488899999999875 68999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+++|+..+.+.++++++...++||
T Consensus 101 t~v~~fL~~~~~~~i~~~m~~~~~pG 126 (192)
T PF03848_consen 101 TVVFMFLQRELRPQIIENMKAATKPG 126 (192)
T ss_dssp ESSGGGS-GGGHHHHHHHHHHTEEEE
T ss_pred EEEeccCCHHHHHHHHHHHHhhcCCc
Confidence 99999999998889999999999997
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-14 Score=121.98 Aligned_cols=93 Identities=22% Similarity=0.308 Sum_probs=80.5
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+.+|||+|||+|.++..|+... ..+|+++|+|+.|++.+++.+. .++.++.+|+.+.+..+++||+|++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhhCCCCCCceeEEEE
Confidence 4689999999999999999443 2357999999999999998763 2678999999988755578999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++||+.|.. .+|.++.++|+||
T Consensus 105 ~~~l~~~~~~~--~~l~~~~~~L~~~ 128 (240)
T TIGR02072 105 NLALQWCDDLS--QALSELARVLKPG 128 (240)
T ss_pred hhhhhhccCHH--HHHHHHHHHcCCC
Confidence 99999999877 9999999999996
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-14 Score=131.08 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=80.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+.+|||||||+|.++..++......|.+||+|+.|+..++...... ....++.|+.+|+++++. .++||+|+|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~-----~~~~~i~~~~~d~e~lp~-~~~FD~V~s 195 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLL-----GNDQRAHLLPLGIEQLPA-LKAFDTVFS 195 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhc-----CCCCCeEEEeCCHHHCCC-cCCcCEEEE
Confidence 46799999999999999999544456999999999998655432111 012368999999999876 578999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+++|+.|+. .+|+++++.|+||
T Consensus 196 ~~vl~H~~dp~--~~L~~l~~~LkpG 219 (322)
T PRK15068 196 MGVLYHRRSPL--DHLKQLKDQLVPG 219 (322)
T ss_pred CChhhccCCHH--HHHHHHHHhcCCC
Confidence 99999999987 9999999999997
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-14 Score=116.59 Aligned_cols=98 Identities=22% Similarity=0.261 Sum_probs=75.4
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEc
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~ 219 (262)
.++..+.+. ..++.+|||+|||+|.++..|. +.+.+|+++|+|+.+++. . +..+...
T Consensus 11 ~~~~~~~~~------~~~~~~vLDiGcG~G~~~~~l~-~~~~~~~g~D~~~~~~~~--~--------------~~~~~~~ 67 (161)
T PF13489_consen 11 DLLERLLPR------LKPGKRVLDIGCGTGSFLRALA-KRGFEVTGVDISPQMIEK--R--------------NVVFDNF 67 (161)
T ss_dssp HHHHHHHTC------TTTTSEEEEESSTTSHHHHHHH-HTTSEEEEEESSHHHHHH--T--------------TSEEEEE
T ss_pred HHHHHHhcc------cCCCCEEEEEcCCCCHHHHHHH-HhCCEEEEEECCHHHHhh--h--------------hhhhhhh
Confidence 445555531 2357899999999999999997 667799999999999999 1 1222222
Q ss_pred CCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 220 d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++..+.+++||+|+|+.+|+|++|+. .+|+++.++|+||
T Consensus 68 ~~~~~~~~~~~fD~i~~~~~l~~~~d~~--~~l~~l~~~Lkpg 108 (161)
T PF13489_consen 68 DAQDPPFPDGSFDLIICNDVLEHLPDPE--EFLKELSRLLKPG 108 (161)
T ss_dssp ECHTHHCHSSSEEEEEEESSGGGSSHHH--HHHHHHHHCEEEE
T ss_pred hhhhhhccccchhhHhhHHHHhhcccHH--HHHHHHHHhcCCC
Confidence 2223333347999999999999999877 9999999999986
|
... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=120.49 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=82.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++ ....+|+++|+|+.|++.|++++.... ...++.|.++|+.+.+ ++||+|++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la-~~~~~v~gvD~s~~~i~~a~~~~~~~~-----~~~~i~~~~~d~~~~~---~~fD~ii~ 125 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELA-KRGAIVKAVDISEQMVQMARNRAQGRD-----VAGNVEFEVNDLLSLC---GEFDIVVC 125 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC-----CCCceEEEECChhhCC---CCcCEEEE
Confidence 47799999999999999999 557789999999999999999875321 1136899999998764 58999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+++|++++++..+++++.+.+++|
T Consensus 126 ~~~l~~~~~~~~~~~l~~i~~~~~~~ 151 (219)
T TIGR02021 126 MDVLIHYPASDMAKALGHLASLTKER 151 (219)
T ss_pred hhHHHhCCHHHHHHHHHHHHHHhCCC
Confidence 99999998887888999999988875
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=119.79 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=79.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++.... ...+++|..+|+... .++||+|++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~-~~~~~v~~~D~s~~~i~~a~~~~~~~~-----~~~~i~~~~~d~~~~---~~~fD~v~~ 133 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLA-RRGAKVVASDISPQMVEEARERAPEAG-----LAGNITFEVGDLESL---LGRFDTVVC 133 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhcC-----CccCcEEEEcCchhc---cCCcCEEEE
Confidence 46799999999999999999 556789999999999999999875421 113688998885432 368999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
+.+++|++++++..+++++.+.+++
T Consensus 134 ~~~l~~~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 134 LDVLIHYPQEDAARMLAHLASLTRG 158 (230)
T ss_pred cchhhcCCHHHHHHHHHHHHhhcCC
Confidence 9999999999888999999887765
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.9e-14 Score=129.33 Aligned_cols=98 Identities=15% Similarity=0.087 Sum_probs=79.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++......|++||+|+.|+..++..-... ....++.+...+++++++. .+||+|+|
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~-----~~~~~v~~~~~~ie~lp~~-~~FD~V~s 194 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLL-----DNDKRAILEPLGIEQLHEL-YAFDTVFS 194 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHh-----ccCCCeEEEECCHHHCCCC-CCcCEEEE
Confidence 46799999999999999999444457999999999998754321111 0123677888999888654 58999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|+.++. .+|++++++|+||
T Consensus 195 ~gvL~H~~dp~--~~L~el~r~LkpG 218 (314)
T TIGR00452 195 MGVLYHRKSPL--EHLKQLKHQLVIK 218 (314)
T ss_pred cchhhccCCHH--HHHHHHHHhcCCC
Confidence 99999999987 9999999999997
|
Known examples to date are restricted to the proteobacteria. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-13 Score=117.13 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=84.0
Q ss_pred CCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
..++.+|||+|||+|.++..++... ..+|+++|+|+.+++.++++... ...++++...|+++++...++||
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-------LGPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-------CCCceEEEecccccCCCCCCCce
Confidence 3457799999999999999999543 24799999999999999997322 23478999999988765557899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++..+++|+.+++ .+++++.++|+||
T Consensus 90 ~v~~~~~~~~~~~~~--~~l~~~~~~L~~g 117 (241)
T PRK08317 90 AVRSDRVLQHLEDPA--RALAEIARVLRPG 117 (241)
T ss_pred EEEEechhhccCCHH--HHHHHHHHHhcCC
Confidence 999999999999987 9999999999997
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-13 Score=118.60 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=80.1
Q ss_pred eeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhh
Q 024811 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~ 238 (262)
+|||+|||+|..+..+++.. ..+|+++|+|+.+++.|++++.... ...+++|+..|+.+.+.+ ++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g-----l~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG-----LQGRIRIFYRDSAKDPFP-DTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCcceEEEecccccCCCC-CCCCEeehHH
Confidence 69999999999999999544 2479999999999999999875421 234689999998665443 5899999999
Q ss_pred HHhhcCchhHHHHHHHHHhhccCC
Q 024811 239 CIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 239 vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++|+.+.+ .+|+++.++|+||
T Consensus 76 ~l~~~~~~~--~~l~~~~~~Lkpg 97 (224)
T smart00828 76 VIHHIKDKM--DLFSNISRHLKDG 97 (224)
T ss_pred HHHhCCCHH--HHHHHHHHHcCCC
Confidence 999999876 9999999999997
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-13 Score=122.62 Aligned_cols=116 Identities=13% Similarity=0.212 Sum_probs=94.1
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC-------CcEEEEeCCHHHHHHHHhhcccccccCCCCC
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~-------~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~ 211 (262)
.+..+.++...+ +...+.++||++||||.++..++.... .+|++.|+|++|+..++++.... .- ...
T Consensus 85 HRlWKd~~v~~L---~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l--~~~ 158 (296)
T KOG1540|consen 85 HRLWKDMFVSKL---GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PL--KAS 158 (296)
T ss_pred hHHHHHHhhhcc---CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CC--CcC
Confidence 344455555444 244578999999999999999994432 46999999999999999986431 11 122
Q ss_pred cceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 212 KATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 212 ~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+.++++|.+++++++.+||...+.+.+..+||++ +.|++++|+||||
T Consensus 159 ~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpG 207 (296)
T KOG1540|consen 159 SRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPG 207 (296)
T ss_pred CceEEEeCCcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCC
Confidence 358899999999999889999999999999999999 9999999999998
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-13 Score=125.96 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=77.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|+++....... .....+++|...|++++ .++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la-~~g~~V~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLA-LEGAIVSASDISAAMVAEAERRAKEALAA-LPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcccc-cccccceEEEEcchhhc---CCCcCEEEE
Confidence 36799999999999999999 56778999999999999999987532100 00123678999998765 268999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhh
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVN 258 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~ 258 (262)
..+++|+++++...+++.+...
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~l 240 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLASL 240 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHhh
Confidence 9999999988777788887754
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-13 Score=128.14 Aligned_cols=95 Identities=20% Similarity=0.145 Sum_probs=82.5
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..+++.. ..+|+++|+|+.|++.|+++... .+++++.+|+++++.++++||+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDvVI 183 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADRYV 183 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeEEE
Confidence 46799999999999999998443 35899999999999999997531 367899999998876567899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++|++|++ .+|+++.++|+||
T Consensus 184 s~~~L~~~~d~~--~~L~e~~rvLkPG 208 (340)
T PLN02490 184 SAGSIEYWPDPQ--RGIKEAYRVLKIG 208 (340)
T ss_pred EcChhhhCCCHH--HHHHHHHHhcCCC
Confidence 999999999988 8999999999997
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-13 Score=113.23 Aligned_cols=115 Identities=18% Similarity=0.176 Sum_probs=86.1
Q ss_pred cchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHhhcccccccCCCC
Q 024811 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDM 210 (262)
Q Consensus 133 ~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~--V~~VD~s~~mld~Ar~~l~~a~~~~~~~ 210 (262)
..++.+..+|...+... +..+|||+|||+|.++..++ +.++. |+++|.++.+++.+++++..- .
T Consensus 14 ~~~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la-~~~~~~~v~~vDi~~~a~~~a~~n~~~n------~ 79 (170)
T PF05175_consen 14 PRLDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALA-KRGPDAKVTAVDINPDALELAKRNAERN------G 79 (170)
T ss_dssp TSHHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHH-HTSTCEEEEEEESBHHHHHHHHHHHHHT------T
T ss_pred CCCCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHH-HhCCCCEEEEEcCCHHHHHHHHHHHHhc------C
Confidence 34445556666666532 46799999999999999999 55555 999999999999999998642 1
Q ss_pred CcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCc---hhHHHHHHHHHhhccCC
Q 024811 211 HKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 211 ~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD---~el~~~l~~~~~~LkPG 262 (262)
..++++++.|+.+..+ .++||+|+|+.+++.-.+ .-+.++++.+.+.|+||
T Consensus 80 ~~~v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 80 LENVEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp CTTEEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred cccccccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCC
Confidence 2238999999987655 479999999998765554 12457999999999986
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-13 Score=115.79 Aligned_cols=90 Identities=12% Similarity=0.019 Sum_probs=74.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC-CC-CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~-~~-~~~~~yDlI 234 (262)
++.+|||+|||+|.++..++......++++|+|+.|++.++++ +++++++|+.+ .. ..+++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhhcccccCCCCcCEE
Confidence 4668999999999999999855556789999999999998752 35678888865 22 334689999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
+|+.++||++|++ .+++++.+.+++
T Consensus 80 i~~~~l~~~~d~~--~~l~e~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQATRNPE--EILDEMLRVGRH 104 (194)
T ss_pred EEhhHhHcCcCHH--HHHHHHHHhCCe
Confidence 9999999999988 899999988875
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.8e-13 Score=116.40 Aligned_cols=105 Identities=10% Similarity=-0.043 Sum_probs=83.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccccccc------CCCCCcceEEEEcCCCCCCCCC-C
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPET-G 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~------~~~~~~~v~f~~~d~~~~~~~~-~ 229 (262)
++.+|||+|||.|+.+..|+ +.+.+|++||+|+.+++.+.+........ ......+++++++|+.++.+.. +
T Consensus 37 ~~~rvL~~gCG~G~da~~LA-~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLA-EQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CCCeEEEeCCCChHhHHHHH-hCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 46799999999999999999 77889999999999999874322110000 0011347899999999986542 5
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.||+|+-.-+++|++.++...+++.+.++|+||
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999999999999888789999999999997
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-13 Score=126.17 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=82.8
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||+|||+|.++..+++..+.+|+++|+|+.|++.|++++.. ..+++...|..++ +++||+|
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhhc---CCCCCEE
Confidence 446789999999999999999955567899999999999999998742 2478888888766 2589999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|..+++|+.+.....+|+++.++|+||
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpG 260 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPD 260 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 9999999998877779999999999997
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-13 Score=121.51 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=81.7
Q ss_pred CCceeeEeeccccH----HHHHHHHhc------CCcEEEEeCCHHHHHHHHhhcccccc---c-----------------
Q 024811 157 QHLVALDCGSGIGR----ITKNLLIRY------FNEVDLLEPVSHFLDAARESLAPENH---M----------------- 206 (262)
Q Consensus 157 ~~~~VLDlGcGtG~----lt~~La~~~------~~~V~~VD~s~~mld~Ar~~l~~a~~---~----------------- 206 (262)
++.+|+|+|||||. ++..|++.. ..+|+++|+|+.||+.|++.+-.... .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 566665321 13699999999999999986421000 0
Q ss_pred -CCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 207 -APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 207 -~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
......+++|.+.|+.+.+++.++||+|+|.++++|+++++..++++++.+.|+||
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG 235 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG 235 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence 00011368999999998766557999999999999999888889999999999997
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=112.15 Aligned_cols=93 Identities=18% Similarity=0.118 Sum_probs=77.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|++++... ...+++|+++|++++.+ .++||+|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~------~l~~i~~~~~d~~~~~~-~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL------GLKNVTVVHGRAEEFGQ-EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc------CCCCEEEEeccHhhCCC-CCCccEEE
Confidence 47899999999999999998432 458999999999999999987653 22358999999999876 57999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+. +.+.+ .+++.+.+.|+||
T Consensus 118 ~~~----~~~~~--~~l~~~~~~LkpG 138 (187)
T PRK00107 118 SRA----VASLS--DLVELCLPLLKPG 138 (187)
T ss_pred Ecc----ccCHH--HHHHHHHHhcCCC
Confidence 975 33444 8999999999997
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-12 Score=114.27 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=83.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++++... ....+++++..|+.+.....++||+|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-----GLSGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-----ccccCeEEEecccccCCCCCCCccEE
Confidence 46799999999999999999544 278999999999999999987532 11246889999998876555789999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++.+++|+.+.+ .+|+++.++|+||
T Consensus 126 ~~~~~l~~~~~~~--~~l~~~~~~L~~g 151 (239)
T PRK00216 126 TIAFGLRNVPDID--KALREMYRVLKPG 151 (239)
T ss_pred EEecccccCCCHH--HHHHHHHHhccCC
Confidence 9999999999877 9999999999996
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-12 Score=130.17 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=80.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yDl 233 (262)
++.+|||+|||+|.++..|+... ..+|+++|+|+.|++.|+++.... ..+++++++|+.+++ +++++||+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-------g~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-------GRSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-------CCCeEEEEcchHhCccccCCCCEEE
Confidence 47899999999999999998432 348999999999999999876421 235788899988764 34578999
Q ss_pred hhhhhHHhhcC-----------chhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLT-----------DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hlt-----------D~el~~~l~~~~~~LkPG 262 (262)
|++++++||+. ++++.++|+++.++||||
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG 530 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG 530 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC
Confidence 99999999863 356779999999999997
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-12 Score=112.29 Aligned_cols=92 Identities=20% Similarity=0.103 Sum_probs=73.7
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+.+|||+|||+|.++..++... ..+|++||+|+.|++.+++++... ...+++++++|++++.+ .++||+|+|
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~------~~~~i~~i~~d~~~~~~-~~~fD~I~s 115 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL------GLNNVEIVNGRAEDFQH-EEQFDVITS 115 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh------CCCCeEEEecchhhccc-cCCccEEEe
Confidence 6799999999999999998332 247999999999999999887542 22468999999998754 369999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+. +++ .+ .+++.+.+.|+||
T Consensus 116 ~~-~~~---~~--~~~~~~~~~Lkpg 135 (181)
T TIGR00138 116 RA-LAS---LN--VLLELTLNLLKVG 135 (181)
T ss_pred hh-hhC---HH--HHHHHHHHhcCCC
Confidence 76 433 23 6788889999997
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=109.29 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=78.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++ ..+.+|+++|.|+.|++.+++++... ..++.++++|+.+..+ ++||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~--~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLK-GKGKCILTTDINPFAVKELRENAKLN-------NVGLDVVMTDLFKGVR--GKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHHc-------CCceEEEEcccccccC--CcccEEEE
Confidence 35789999999999999999 55668999999999999999998532 2357889999877643 58999999
Q ss_pred hhHHhhcCchh-------------------HHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDD-------------------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~e-------------------l~~~l~~~~~~LkPG 262 (262)
+.++++.++.. +..+++++.++|+||
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 133 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG 133 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence 99888776421 346899999999996
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-12 Score=111.17 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=82.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||+|||+|.++..++..... +++++|+++.+++.++++.. ...+++++.+|+.+.....++||+|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------~~~~i~~~~~d~~~~~~~~~~~D~i 110 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------LPLNIEFIQADAEALPFEDNSFDAV 110 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--------cCCCceEEecchhcCCCCCCcEEEE
Confidence 4679999999999999999955442 79999999999999999864 1236789999998876555689999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++++++|+++.+ .+++++.+.|+||
T Consensus 111 ~~~~~~~~~~~~~--~~l~~~~~~L~~g 136 (223)
T TIGR01934 111 TIAFGLRNVTDIQ--KALREMYRVLKPG 136 (223)
T ss_pred EEeeeeCCcccHH--HHHHHHHHHcCCC
Confidence 9999999999877 9999999999997
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-12 Score=111.90 Aligned_cols=96 Identities=17% Similarity=0.237 Sum_probs=80.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..++ +...+|+++|+++.+++.|++++... ...++++..++.++.. ..++||+|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~-~~~~~v~~iD~s~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~fD~Ii 119 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMA-RLGADVTGIDASEENIEVARLHALES-------GLKIDYRQTTAEELAAEHPGQFDVVT 119 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHH-HcCCeEEEEcCCHHHHHHHHHHHHHc-------CCceEEEecCHHHhhhhcCCCccEEE
Confidence 46789999999999999998 55678999999999999999886432 1256788888877641 236899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++|+.+.+ .+|+.+.+.|+||
T Consensus 120 ~~~~l~~~~~~~--~~l~~~~~~L~~g 144 (233)
T PRK05134 120 CMEMLEHVPDPA--SFVRACAKLVKPG 144 (233)
T ss_pred EhhHhhccCCHH--HHHHHHHHHcCCC
Confidence 999999999987 8999999999996
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-12 Score=110.60 Aligned_cols=97 Identities=18% Similarity=0.280 Sum_probs=82.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~ 235 (262)
.+.+|||+|||+|.++..++ +...+|+++|+|+.+++.+++++... ...++++...|+.++... +++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~-~~~~~v~~iD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLA-RLGANVTGIDASEENIEVAKLHAKKD------PLLKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHc------CCCceEEEeCCHHHhhcCCCCCccEEE
Confidence 36799999999999999998 55667999999999999999987532 112578889998877543 36899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++|+.+++ .+++++.++|+||
T Consensus 118 ~~~~l~~~~~~~--~~l~~~~~~L~~g 142 (224)
T TIGR01983 118 CMEVLEHVPDPQ--AFIRACAQLLKPG 142 (224)
T ss_pred ehhHHHhCCCHH--HHHHHHHHhcCCC
Confidence 999999999988 9999999999986
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-12 Score=112.57 Aligned_cols=100 Identities=12% Similarity=0.026 Sum_probs=76.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCC-CCCC--CCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT--PETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~-~~~~--~~~~~yD 232 (262)
+..+|||+|||+|.++..|+... ..+|++||+|+.|++.|++++... ...++.|+++|+ +.+. ..+++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE------GLTNLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc------CCCCEEEEecCHHHHHHHHcCccccc
Confidence 36789999999999999998442 347999999999999999987542 224789999999 6554 3346899
Q ss_pred hhhhhhHHhhcC------chhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLT------DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hlt------D~el~~~l~~~~~~LkPG 262 (262)
+|+++++..+.. ......+++++.++|+||
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg 149 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG 149 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCC
Confidence 999987543222 212347999999999996
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.9e-12 Score=98.41 Aligned_cols=95 Identities=13% Similarity=-0.028 Sum_probs=73.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI 234 (262)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++++... ...++.++..|+.+.. ....+||+|
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~D~v 92 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF------GVSNIVIVEGDAPEALEDSLPEPDRV 92 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh------CCCceEEEeccccccChhhcCCCCEE
Confidence 45699999999999999999443 247999999999999999987542 1236788888877532 223589999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+..+.++ ..++++.+.+.|+||
T Consensus 93 ~~~~~~~~-----~~~~l~~~~~~Lk~g 115 (124)
T TIGR02469 93 FIGGSGGL-----LQEILEAIWRRLRPG 115 (124)
T ss_pred EECCcchh-----HHHHHHHHHHHcCCC
Confidence 99765433 338999999999997
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.7e-12 Score=114.47 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=78.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC-CCCCC----
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG---- 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~-~~~~~---- 229 (262)
++.+|||+|||+|+.|..|+... ..+|+++|+|++|++.|++++.... ...++.++++|+.+. .....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-----p~~~v~~i~gD~~~~~~~~~~~~~~ 137 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-----PQLEVHGICADFTQPLALPPEPAAG 137 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-----CCceEEEEEEcccchhhhhcccccC
Confidence 45789999999999999999443 4689999999999999999875321 112467789999874 22211
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
...++++..+++|+++++...+|++++++|+||
T Consensus 138 ~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred CeEEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 233455556899999989889999999999997
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=113.46 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=81.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.+..+|||||||+|.++..++ +.++ +++++|. +.+++.+++++.... ...+++++.+|+.+.+++ .+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~-~~~p~~~~~~~D~-~~~~~~a~~~~~~~g-----l~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAML-KHFPELDSTILNL-PGAIDLVNENAAEKG-----VADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHH-HHCCCCEEEEEec-HHHHHHHHHHHHhCC-----ccceEEEEecCccCCCCC--CCCE
Confidence 456799999999999999999 4443 6889997 799999999876431 234689999999865443 4799
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+++.++|+.++++...+|+++.++|+||
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pg 247 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSG 247 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCC
Confidence 99999999999887789999999999997
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=107.13 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=74.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..|+... ..+|+++|.++.|++.|++++.... ...+++++.+|..+..+...+||+
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-----~~~~v~~~~~d~~~~~~~~~~fD~ 145 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-----YWGVVEVYHGDGKRGLEKHAPFDA 145 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCcEEEEECCcccCCccCCCccE
Confidence 356899999999999999998433 2589999999999999999886421 123588999999875444468999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++..+++|+++ ++.+.|+||
T Consensus 146 Ii~~~~~~~~~~--------~l~~~L~~g 166 (205)
T PRK13944 146 IIVTAAASTIPS--------ALVRQLKDG 166 (205)
T ss_pred EEEccCcchhhH--------HHHHhcCcC
Confidence 999988887763 466778886
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-12 Score=110.84 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=81.0
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceE-EEEcCCCCCC-CCCCccchhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN-FFCVPLQDFT-PETGRYDVIW 235 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~-f~~~d~~~~~-~~~~~yDlI~ 235 (262)
...|||+|||||..-+..--....+|+++||++.|-+.|.+.+++.+ ..++. |+.++.++++ .++++||+|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k------~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK------PLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc------CcceEEEEeechhcCcccccCCeeeEE
Confidence 34689999999997665543346789999999999999999887653 23444 8999999986 3568999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++|.-..|+. +.|++++++|+||
T Consensus 151 ~TlvLCSve~~~--k~L~e~~rlLRpg 175 (252)
T KOG4300|consen 151 CTLVLCSVEDPV--KQLNEVRRLLRPG 175 (252)
T ss_pred EEEEEeccCCHH--HHHHHHHHhcCCC
Confidence 999999999988 9999999999997
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=111.07 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=69.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcC----CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~----~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
...+|||+|||+|.++..|+.... ..|+++|+|+.|++.|+++. +++.|..+|+.++++.+++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCcee
Confidence 356899999999999999984321 26899999999999998764 257899999998877667999
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++.++ + ..++++.++|+||
T Consensus 154 ~I~~~~~------~---~~~~e~~rvLkpg 174 (272)
T PRK11088 154 AIIRIYA------P---CKAEELARVVKPG 174 (272)
T ss_pred EEEEecC------C---CCHHHHHhhccCC
Confidence 9998653 1 3457789999997
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=107.04 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=72.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCc---EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCcc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~---V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~y 231 (262)
..++.+|||+|||+|.++..|+ +.+.. |+++|.++.+++.|++++... ...++.++++|..+..+...+|
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la-~~~~~~g~V~~vD~~~~~~~~A~~~~~~~------g~~~v~~~~~d~~~~~~~~~~f 147 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLA-EIVGRDGLVVSIERIPELAEKAERRLRKL------GLDNVIVIVGDGTQGWEPLAPY 147 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHH-HHhCCCCEEEEEeCCHHHHHHHHHHHHHC------CCCCeEEEECCcccCCcccCCC
Confidence 3467899999999999999999 44443 999999999999999998643 2347899999998764444689
Q ss_pred chhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|++..+..+++ ..+.+.|+||
T Consensus 148 D~Ii~~~~~~~~~--------~~~~~~L~~g 170 (215)
T TIGR00080 148 DRIYVTAAGPKIP--------EALIDQLKEG 170 (215)
T ss_pred CEEEEcCCccccc--------HHHHHhcCcC
Confidence 9999887665554 3456778886
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-11 Score=107.07 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=73.5
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
..++.+|||+|||+|.++..|+.... .+|+++|+++.|++.|++++... ...+++++++|..+..++.++||
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~------g~~~v~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL------GYDNVEVIVGDGTLGYEENAPYD 147 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEECCcccCCCcCCCcC
Confidence 34678999999999999999884332 48999999999999999998643 23478999999877555457899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++..++.+++ ..+.+.|+||
T Consensus 148 ~I~~~~~~~~~~--------~~l~~~Lkpg 169 (212)
T PRK13942 148 RIYVTAAGPDIP--------KPLIEQLKDG 169 (212)
T ss_pred EEEECCCcccch--------HHHHHhhCCC
Confidence 999987665543 2455678886
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-11 Score=102.13 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=72.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..+++.. ..+|+++|+|+.|++.|++++... ...+++++++|.... . .++||+|+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~------~~~~i~~~~~d~~~~-~-~~~~D~v~ 102 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF------GCGNIDIIPGEAPIE-L-PGKADAIF 102 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh------CCCCeEEEecCchhh-c-CcCCCEEE
Confidence 57799999999999999999443 247999999999999999987532 123688888887532 2 25899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..+.+++ ..+++.+.+.|+||
T Consensus 103 ~~~~~~~~-----~~~l~~~~~~Lk~g 124 (187)
T PRK08287 103 IGGSGGNL-----TAIIDWSLAHLHPG 124 (187)
T ss_pred ECCCccCH-----HHHHHHHHHhcCCC
Confidence 87654432 36889999999997
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=103.92 Aligned_cols=105 Identities=11% Similarity=-0.059 Sum_probs=84.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccc------cccCCCCCcceEEEEcCCCCCCCC---
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE------NHMAPDMHKATNFFCVPLQDFTPE--- 227 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a------~~~~~~~~~~v~f~~~d~~~~~~~--- 227 (262)
++.+||+.|||.|+-...|+ ..+.+|++||+|+.+++.+.+..... ..........++++++|+.++++.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA-~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFL-SKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCeEEEeCCCChHHHHHHH-hCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 46799999999999999999 66778999999999999986632110 000001234789999999999642
Q ss_pred CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 228 ~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++||+|+-..+|++++.+...++.+.+.++|+||
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg 156 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN 156 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC
Confidence 25899999999999998887778999999999996
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.2e-12 Score=97.80 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=76.7
Q ss_pred CceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yDlI 234 (262)
+.+|||+|||+|.++..++ +.+ .+++++|+++..++.|+.++.... ...+++++++|+.++. ...++||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~-~~~~~~~~gvdi~~~~~~~a~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAAL-RRGAARVTGVDIDPEAVELARRNLPRNG-----LDDRVEVIVGDARDLPEPLPDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHH-HHCTCEEEEEESSHHHHHHHHHHCHHCT-----TTTTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHH-HHCCCeEEEEEECHHHHHHHHHHHHHcc-----CCceEEEEECchhhchhhccCceeEEE
Confidence 3589999999999999999 555 899999999999999999987531 2246899999998875 345799999
Q ss_pred hhhhHHhhcC-c-----hhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLT-D-----DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hlt-D-----~el~~~l~~~~~~LkPG 262 (262)
+++.+++... + .....|++++.+.|+||
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g 108 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG 108 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCC
Confidence 9998765331 1 12357999999999986
|
... |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-11 Score=106.06 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=76.0
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC---CCCCccch
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~---~~~~~yDl 233 (262)
..+|||+|||+|.++..++.+. ..+|++||+|+.|++.|++++... ...+++++++|+.++. .+.+.+|.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~------~l~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL------GLKNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh------CCCCEEEEccCHHHHHHhhCCCCceeE
Confidence 4589999999999999999443 237999999999999999987542 2347999999997642 22358999
Q ss_pred hhhhhHHhhcCch------hHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDD------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~------el~~~l~~~~~~LkPG 262 (262)
|+++++..|.... ....+++.+.++|+||
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg 125 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKG 125 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence 9998765443221 1136999999999997
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.8e-11 Score=103.13 Aligned_cols=89 Identities=12% Similarity=0.021 Sum_probs=75.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~~~~~yDlI 234 (262)
++.+|||+|||.|.+...|......++.+||.+++.+..+-++ .++.+++|+++- .+++++||.|
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhhCCCCCccEE
Confidence 5889999999999999999966777889999999998888775 467888888663 2345899999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhcc
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHS 260 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~Lk 260 (262)
|++.+|.++.+++ .+|+++.|+-+
T Consensus 80 IlsqtLQ~~~~P~--~vL~EmlRVgr 103 (193)
T PF07021_consen 80 ILSQTLQAVRRPD--EVLEEMLRVGR 103 (193)
T ss_pred ehHhHHHhHhHHH--HHHHHHHHhcC
Confidence 9999999999999 88988887644
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.4e-11 Score=103.76 Aligned_cols=99 Identities=10% Similarity=-0.059 Sum_probs=75.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..++.....+|+++|.|+.|++.+++++... ..++.++++|+.+..+ .++||+|+
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~-------~~~~~~~~~d~~~~~~-~~~fD~Vi 106 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA-------GVDVDVRRGDWARAVE-FRPFDVVV 106 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh-------CCeeEEEECchhhhcc-CCCeeEEE
Confidence 356799999999999999999443348999999999999999987532 1257888999877543 36899999
Q ss_pred hhhHHhhcCc-------------------hhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTD-------------------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD-------------------~el~~~l~~~~~~LkPG 262 (262)
++....+-++ ..+..+++++.++|+||
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g 152 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG 152 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC
Confidence 9865332211 11346889999999997
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.7e-11 Score=108.77 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=80.7
Q ss_pred CCceeeEeeccccHHHHHHHH-hcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLI-RYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~-~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.+.+|+|||||+|.+|..++. ..++ +++++|.++.+++.|++.+... ....++++|..+|+.+..+..+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~----~gL~~rV~F~~~Da~~~~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD----PDLSKRMFFHTADVMDVTESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc----cCccCCcEEEECchhhcccccCCcCE
Confidence 467999999998877655552 3454 5999999999999999988431 11235799999999887443468999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++. +++|+..++..++|+++.+.|+||
T Consensus 199 VF~~-ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 199 VFLA-ALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred EEEe-cccccccccHHHHHHHHHHhcCCC
Confidence 9999 999997666669999999999997
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=101.37 Aligned_cols=92 Identities=14% Similarity=0.033 Sum_probs=72.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..|+ ..+.+|+++|.++.+++.|++++... ...++++..+|..+..+..++||+|+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la-~~~~~v~~vd~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~fD~I~ 149 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLA-HLVRRVFSVERIKTLQWEAKRRLKQL------GLHNVSVRHGDGWKGWPAYAPFDRIL 149 (212)
T ss_pred CCCCEEEEECCCccHHHHHHH-HHhCEEEEEeCCHHHHHHHHHHHHHC------CCCceEEEECCcccCCCcCCCcCEEE
Confidence 457899999999999999887 55678999999999999999988643 23468999999865433346899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..++++++ ..+.+.|+||
T Consensus 150 ~~~~~~~~~--------~~l~~~L~~g 168 (212)
T PRK00312 150 VTAAAPEIP--------RALLEQLKEG 168 (212)
T ss_pred EccCchhhh--------HHHHHhcCCC
Confidence 987766653 3456788886
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-10 Score=86.09 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=76.5
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchhhhhh
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQW 238 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI~s~~ 238 (262)
+++|+|||+|.++..++.....++.++|+++.+++.+++.... ....+++++..|+.++.. ..++||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA------LLADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc------ccccceEEEEcChhhhccccCCceEEEEEcc
Confidence 4899999999999999953567899999999999999853221 123578999999988764 346899999999
Q ss_pred HHhhcCchhHHHHHHHHHhhccCC
Q 024811 239 CIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 239 vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++++ ......+++.+.+.|+||
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPG 97 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCC
Confidence 98884 333448999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-10 Score=104.03 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=71.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+++....+|.++|+|+.|++.|++++.... ....+.+...+..... .++||+|++
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~-----~~~~~~~~~~~~~~~~--~~~fDlVva 231 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQ-----VSDRLQVKLIYLEQPI--EGKADVIVA 231 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-----CCcceEEEeccccccc--CCCceEEEE
Confidence 467999999999999999884434589999999999999999875321 1224556666543332 368999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+...++ +..++.++.+.|+||
T Consensus 232 n~~~~~-----l~~ll~~~~~~Lkpg 252 (288)
T TIGR00406 232 NILAEV-----IKELYPQFSRLVKPG 252 (288)
T ss_pred ecCHHH-----HHHHHHHHHHHcCCC
Confidence 865433 347899999999997
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-10 Score=98.51 Aligned_cols=98 Identities=10% Similarity=0.097 Sum_probs=75.4
Q ss_pred CCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCcc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRY 231 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~y 231 (262)
..++.+|||+|||+|.++..++... ..+|+++|.++.|++.|++++.... ...++.++++|+.++.+. .+.|
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-----~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-----VLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-----CCCCeEEEEechhhhHhhcCCCC
Confidence 4467899999999999999988443 3579999999999999999875421 124688899998775322 2589
Q ss_pred chhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|++.. ...++..+++.+.+.|+||
T Consensus 113 D~V~~~~-----~~~~~~~~l~~~~~~Lkpg 138 (198)
T PRK00377 113 DRIFIGG-----GSEKLKEIISASWEIIKKG 138 (198)
T ss_pred CEEEECC-----CcccHHHHHHHHHHHcCCC
Confidence 9999854 2234458999999999996
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-10 Score=96.71 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=69.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++ +...+|+++|.++.|++.+++++.. ..+++++.+|+.++.++...||.|++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~-~~~~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~~~~~~~~d~vi~ 83 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELL-ERAARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKFDLPKLQPYKVVG 83 (169)
T ss_pred CcCEEEEECCCccHHHHHHH-hcCCeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcCCccccCCCEEEE
Confidence 46789999999999999999 4578899999999999999998742 24789999999998765456999999
Q ss_pred hhHHhhcCchhHHHHHH
Q 024811 237 QWCIGHLTDDDFVSFFK 253 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~ 253 (262)
+..+ |++.+.+..+++
T Consensus 84 n~Py-~~~~~~i~~~l~ 99 (169)
T smart00650 84 NLPY-NISTPILFKLLE 99 (169)
T ss_pred CCCc-ccHHHHHHHHHh
Confidence 8765 455444444544
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-10 Score=104.13 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=65.4
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
..+|||+|||+|.++..++.+. ..+|+++|.|+.|++.|++++. ++.++++|+.++... .+||+|++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~e~~~~-~kFDlIIs 132 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------EAEWITSDVFEFESN-EKFDVVIS 132 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------CCEEEECchhhhccc-CCCcEEEE
Confidence 5689999999999999998443 4589999999999999998742 578999999988644 68999999
Q ss_pred hhHHhhcCch
Q 024811 237 QWCIGHLTDD 246 (262)
Q Consensus 237 ~~vl~hltD~ 246 (262)
+.+++|++..
T Consensus 133 NPPF~~l~~~ 142 (279)
T PHA03411 133 NPPFGKINTT 142 (279)
T ss_pred cCCccccCch
Confidence 9999997654
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-10 Score=104.14 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=77.6
Q ss_pred CCceeeEeeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
.+.+||+||||+|.++..+++. ...+|++||+++.+++.|++.+...... .-..++++++.+|..++.. ..++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCcccEE
Confidence 4679999999999999999944 2468999999999999999987532110 0024578999999877632 23689999
Q ss_pred hhhhHHhhcCchhH--HHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDF--VSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el--~~~l~~~~~~LkPG 262 (262)
++..+-.+.+...+ .+|++.|++.|+||
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~g 184 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKED 184 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 98653332222222 47999999999997
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-10 Score=102.86 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=82.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC--CCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~--~~~yDl 233 (262)
...+|||+|||+|.++..|+++.- .++++||..+.|.+.|+++++.. ....++++++.|+.++... ..+||+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln-----~l~~ri~v~~~Di~~~~~~~~~~~fD~ 118 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN-----PLEERIQVIEADIKEFLKALVFASFDL 118 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC-----cchhceeEehhhHHHhhhcccccccCE
Confidence 478999999999999999995533 58999999999999999998752 2346899999999998542 246999
Q ss_pred hhhhhHH----------------hhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCI----------------GHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl----------------~hltD~el~~~l~~~~~~LkPG 262 (262)
|+||.++ +|...-.+.++++.++..||||
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~ 163 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG 163 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC
Confidence 9999752 4444445778999999999986
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.5e-10 Score=99.41 Aligned_cols=99 Identities=22% Similarity=0.215 Sum_probs=74.1
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++.. ....++.++.+|+.+..+ .++||+|+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~------~~~~~i~~~~~d~~~~~~-~~~fD~Iv 180 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH------GLGARVEFLQGDWFEPLP-GGRFDLIV 180 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh------CCCCcEEEEEccccCcCC-CCceeEEE
Confidence 46789999999999999999443 36799999999999999999751 123478999999865433 36899999
Q ss_pred hhhHH------hhcCc------------------hhHHHHHHHHHhhccCC
Q 024811 236 VQWCI------GHLTD------------------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl------~hltD------------------~el~~~l~~~~~~LkPG 262 (262)
++.+. +.+.+ .....+++++.+.|+||
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~g 231 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPG 231 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccC
Confidence 97532 11111 11246889999999996
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.1e-10 Score=98.89 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=70.8
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC---CCCC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~---~~~~ 229 (262)
..++.+|||+|||+|.++..|+ +.. ..|.++|.++.|++.+.+++.. ..++.++.+|+.+.. +-.+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la-~~v~~g~V~avD~~~~ml~~l~~~a~~--------~~nv~~i~~D~~~~~~~~~l~~ 140 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVS-DIVEEGVVYAVEFAPRPMRELLEVAEE--------RKNIIPILADARKPERYAHVVE 140 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHH-HhcCCCeEEEEECCHHHHHHHHHHhhh--------cCCcEEEECCCCCcchhhhccc
Confidence 4567899999999999999999 543 4799999999999988776532 146888888986521 1124
Q ss_pred ccchhhhhhHHhhcCchhH-HHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDF-VSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el-~~~l~~~~~~LkPG 262 (262)
+||+|++ ++++++. ..+++++.+.||||
T Consensus 141 ~~D~i~~-----d~~~p~~~~~~L~~~~r~LKpG 169 (226)
T PRK04266 141 KVDVIYQ-----DVAQPNQAEIAIDNAEFFLKDG 169 (226)
T ss_pred cCCEEEE-----CCCChhHHHHHHHHHHHhcCCC
Confidence 6999984 3445432 35789999999997
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-10 Score=100.88 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=73.9
Q ss_pred CceeeEeeccccHHHHHHHHhc----CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 158 HLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~----~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
+.+|||+|||+|.++..++... ..+|++||+++.+++.|++++. ++.++++|+..+.+. ++||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------~~~~~~~D~~~~~~~-~~FDl 117 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------EATWINADALTTEFD-TLFDM 117 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------CCEEEEcchhccccc-CCccE
Confidence 5799999999999999998432 2479999999999999998753 468999999877653 68999
Q ss_pred hhhhhHHhhcCch---------h-HHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDD---------D-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~---------e-l~~~l~~~~~~LkPG 262 (262)
||||.+++-+... . ...++.++.++++||
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G 156 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQG 156 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCC
Confidence 9999876533211 2 335899999988887
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=96.36 Aligned_cols=98 Identities=20% Similarity=0.167 Sum_probs=74.4
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++... ...++.++++|+.+..+ .++||+|++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~-~~~fD~Vi~ 160 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL------GLDNVTFLQSDWFEPLP-GGKFDLIVS 160 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhccCc-CCceeEEEE
Confidence 4589999999999999999443 348999999999999999987542 22368999999977433 468999999
Q ss_pred hhHH------hhcCch------------------hHHHHHHHHHhhccCC
Q 024811 237 QWCI------GHLTDD------------------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl------~hltD~------------------el~~~l~~~~~~LkPG 262 (262)
+.++ +++... ....+++++.+.|+||
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~g 210 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPG 210 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccC
Confidence 7542 222211 1236899999999996
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.9e-10 Score=99.68 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=74.3
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhh
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~ 238 (262)
..++|+|||+|.-++.++ .++++|.++|+|+.||+.|++.-..-. .....++...++.++.-.+++.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~ia-e~~k~VIatD~s~~mL~~a~k~~~~~y-----~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIA-EHYKEVIATDVSEAMLKVAKKHPPVTY-----CHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHH-HhhhhheeecCCHHHHHHhhcCCCccc-----ccCCccccccccccccCCCcceeeehhhh
Confidence 389999999997777777 889999999999999999998754311 11233455556666654458999999999
Q ss_pred HHhhcCchhHHHHHHHHHhhccC
Q 024811 239 CIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 239 vl~hltD~el~~~l~~~~~~LkP 261 (262)
++|++..+ +|++.++++|++
T Consensus 109 a~HWFdle---~fy~~~~rvLRk 128 (261)
T KOG3010|consen 109 AVHWFDLE---RFYKEAYRVLRK 128 (261)
T ss_pred hHHhhchH---HHHHHHHHHcCC
Confidence 99999855 699999999997
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.1e-10 Score=94.96 Aligned_cols=100 Identities=12% Similarity=0.023 Sum_probs=74.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++. ...+|+++|.|+.|++.+++++..... ....+.++..|+.+..+. .+||+|++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~~d~~~~~~~-~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAK-NGKKVVGVDINPYAVECAKCNAKLNNI----RNNGVEVIRSDLFEPFRG-DKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHh-hcceEEEEECCHHHHHHHHHHHHHcCC----CCcceEEEeccccccccc-cCceEEEE
Confidence 467899999999999999994 478999999999999999998753211 111278888888765443 48999998
Q ss_pred hhHHhhcC-------------------chhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLT-------------------DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hlt-------------------D~el~~~l~~~~~~LkPG 262 (262)
+..+.+-. ...+..+++++.++|+||
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 75433211 112346899999999996
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.6e-10 Score=102.15 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=73.7
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+.+|||+|||+|.++..++... ..+|+++|.|+.+++.|++++.... ...+++|+++|+.+..+ .++||+|+|
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~-----~~~~i~~~~~D~~~~~~-~~~fD~Iv~ 195 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG-----LEDRVTLIQSDLFAALP-GRKYDLIVS 195 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEECchhhccC-CCCccEEEE
Confidence 4689999999999999999443 2489999999999999999975421 12368999999865433 358999999
Q ss_pred hhH------HhhcCc-----h------------hHHHHHHHHHhhccCC
Q 024811 237 QWC------IGHLTD-----D------------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~v------l~hltD-----~------------el~~~l~~~~~~LkPG 262 (262)
+.+ +.++.. + ....+++.+.+.|+||
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~g 244 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNEN 244 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 843 112211 1 1246899999999996
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.4e-11 Score=104.35 Aligned_cols=104 Identities=16% Similarity=0.146 Sum_probs=81.1
Q ss_pred HHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcC
Q 024811 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (262)
Q Consensus 141 fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d 220 (262)
+|..+|.. + ...+..++||+|||||-.+..|- ....+.++||+|+.|+++|.++=-. -.++..+
T Consensus 113 ~l~emI~~-~---~~g~F~~~lDLGCGTGL~G~~lR-~~a~~ltGvDiS~nMl~kA~eKg~Y-----------D~L~~Ae 176 (287)
T COG4976 113 LLAEMIGK-A---DLGPFRRMLDLGCGTGLTGEALR-DMADRLTGVDISENMLAKAHEKGLY-----------DTLYVAE 176 (287)
T ss_pred HHHHHHHh-c---cCCccceeeecccCcCcccHhHH-HHHhhccCCchhHHHHHHHHhccch-----------HHHHHHH
Confidence 46666542 1 23347899999999999999998 7888999999999999999986311 1234455
Q ss_pred CCCCC--CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 221 LQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 221 ~~~~~--~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..|. ....+||+|++.-|+.|+-+-+ .+|.-....|+||
T Consensus 177 a~~Fl~~~~~er~DLi~AaDVl~YlG~Le--~~~~~aa~~L~~g 218 (287)
T COG4976 177 AVLFLEDLTQERFDLIVAADVLPYLGALE--GLFAGAAGLLAPG 218 (287)
T ss_pred HHHHhhhccCCcccchhhhhHHHhhcchh--hHHHHHHHhcCCC
Confidence 55443 2346999999999999999977 9999999999997
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.1e-10 Score=104.17 Aligned_cols=100 Identities=12% Similarity=-0.119 Sum_probs=79.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||.|||+|.++..++ ..+.+|.++|.++.|+..|+.++... ...++.++++|+.+++...++||+|+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa-~~~~~v~g~Di~~~~~~~a~~nl~~~------g~~~i~~~~~D~~~l~~~~~~~D~Iv 253 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAG-LMGAKVIGCDIDWKMVAGARINLEHY------GIEDFFVKRGDATKLPLSSESVDAIA 253 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHH-HhCCeEEEEcCCHHHHHHHHHHHHHh------CCCCCeEEecchhcCCcccCCCCEEE
Confidence 457799999999999999887 56788999999999999999998643 12347889999998866557899999
Q ss_pred hhhHHhhcC------c-hhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLT------D-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hlt------D-~el~~~l~~~~~~LkPG 262 (262)
++.+.+.-. . .-...+++.+.+.|+||
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~g 287 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSE 287 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHHHHHHccCC
Confidence 986543211 1 22357999999999997
|
This family is found exclusively in the Archaea. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5e-10 Score=98.12 Aligned_cols=90 Identities=8% Similarity=0.018 Sum_probs=68.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--------
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-------- 225 (262)
.++.+|||+|||||.++..+++... ..|++||+++ | .. ..++.++++|+.+..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-------~~---------~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-------DP---------IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-------cC---------CCCcEEEecCCCChHHHHHHHHH
Confidence 3577999999999999999995543 4799999988 2 11 135789999998852
Q ss_pred CCCCccchhhhhhHHhhcCchh---------HHHHHHHHHhhccCC
Q 024811 226 PETGRYDVIWVQWCIGHLTDDD---------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 ~~~~~yDlI~s~~vl~hltD~e---------l~~~l~~~~~~LkPG 262 (262)
...++||+|+|+.+.++..++. +..+|+.+.++|+||
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG 158 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG 158 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2346899999987665554321 236899999999997
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=104.19 Aligned_cols=76 Identities=20% Similarity=0.195 Sum_probs=60.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI 234 (262)
++.+|||+|||+|.++..++... ..+|+++|.|+.|++.|++++... ..+++|+++|+.+.. +..++||+|
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-------g~rV~fi~gDl~e~~l~~~~~FDLI 323 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-------GARVEFAHGSWFDTDMPSEGKWDII 323 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCcEEEEEcchhccccccCCCccEE
Confidence 35689999999999999998443 457999999999999999997532 236899999996542 223589999
Q ss_pred hhhhH
Q 024811 235 WVQWC 239 (262)
Q Consensus 235 ~s~~v 239 (262)
+||.+
T Consensus 324 VSNPP 328 (423)
T PRK14966 324 VSNPP 328 (423)
T ss_pred EECCC
Confidence 99875
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.4e-10 Score=101.45 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=76.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+.+|||||||.|..+-.++.+....|.+|||++.+.-..+---.... ....+.+....+++++. .+.||+|+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg-----~~~~~~~lplgvE~Lp~-~~~FDtVF~ 188 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG-----QDPPVFELPLGVEDLPN-LGAFDTVFS 188 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC-----CCccEEEcCcchhhccc-cCCcCEEEE
Confidence 477999999999999999995555679999999999776443211110 11223334467788866 579999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..||.|..+|- ..|+.++..|+||
T Consensus 189 MGVLYHrr~Pl--~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 189 MGVLYHRRSPL--DHLKQLKDSLRPG 212 (315)
T ss_pred eeehhccCCHH--HHHHHHHHhhCCC
Confidence 99999999998 9999999999987
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-09 Score=92.84 Aligned_cols=95 Identities=12% Similarity=0.041 Sum_probs=69.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC-CCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~-~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..++... ..+|++||+|+.|++.|++++... ...+++++.+|+.+. ......+|.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~------~~~~v~~~~~d~~~~~~~~~~~~d~ 112 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF------GVKNVEVIEGSAPECLAQLAPAPDR 112 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCCeEEEECchHHHHhhCCCCCCE
Confidence 357899999999999999998332 358999999999999999988542 124688999888652 111124566
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+.. ....+..+++++.+.|+||
T Consensus 113 v~~~------~~~~~~~~l~~~~~~Lkpg 135 (196)
T PRK07402 113 VCIE------GGRPIKEILQAVWQYLKPG 135 (196)
T ss_pred EEEE------CCcCHHHHHHHHHHhcCCC
Confidence 5432 1223458999999999997
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-09 Score=101.55 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=73.5
Q ss_pred ceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
.+|||+|||+|.++..++... ..+|+++|.|+.+++.|++++.... ...+++|+++|+.+..+. ++||+|+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~-----l~~~i~~~~~D~~~~l~~-~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG-----LEDRVTLIESDLFAALPG-RRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCCcEEEEECchhhhCCC-CCccEEEEC
Confidence 689999999999999999443 3489999999999999999985421 123589999998765443 589999998
Q ss_pred hHH------h-------hcCc----------hhHHHHHHHHHhhccCC
Q 024811 238 WCI------G-------HLTD----------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~vl------~-------hltD----------~el~~~l~~~~~~LkPG 262 (262)
.+. . |-+. .....+++.+.+.|+||
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pg 256 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTED 256 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCC
Confidence 421 1 1111 11246899999999997
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=97.62 Aligned_cols=88 Identities=15% Similarity=0.038 Sum_probs=63.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+++....+|+++|+|+.|++.|++++.... ....+.+..+ ..+||+|++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-----~~~~~~~~~~--------~~~fD~Vva 185 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-----VELNVYLPQG--------DLKADVIVA 185 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-----CCceEEEccC--------CCCcCEEEE
Confidence 578999999999999998883333459999999999999999875320 1012222221 127999998
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+...+ .+..++.++.+.|+||
T Consensus 186 ni~~~-----~~~~l~~~~~~~Lkpg 206 (250)
T PRK00517 186 NILAN-----PLLELAPDLARLLKPG 206 (250)
T ss_pred cCcHH-----HHHHHHHHHHHhcCCC
Confidence 75422 2347899999999997
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.2e-10 Score=97.85 Aligned_cols=90 Identities=19% Similarity=0.291 Sum_probs=73.1
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.+..+|||||+|.|.++..++ +.++ ++++.|. |..++.+++ . .+++++.+|+.+- .+ . ||+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~-~~~P~l~~~v~Dl-p~v~~~~~~--~----------~rv~~~~gd~f~~-~P-~-~D~ 161 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALA-RAYPNLRATVFDL-PEVIEQAKE--A----------DRVEFVPGDFFDP-LP-V-ADV 161 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHH-HHSTTSEEEEEE--HHHHCCHHH--T----------TTEEEEES-TTTC-CS-S-ESE
T ss_pred cCccEEEeccCcchHHHHHHH-HHCCCCcceeecc-Hhhhhcccc--c----------cccccccccHHhh-hc-c-ccc
Confidence 345689999999999999999 5555 6778898 888888888 1 3799999999833 32 4 999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+..++||+++|++.+.+|++++++|+||
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-09 Score=101.44 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=70.6
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..+++.... .|+++|.++.|++.|++++... ...++.++++|..+..++.++||+
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~------g~~nV~~i~gD~~~~~~~~~~fD~ 152 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL------GIENVIFVCGDGYYGVPEFAPYDV 152 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCChhhcccccCCccE
Confidence 45789999999999999999944332 5999999999999999987542 234688999998766544468999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++...+.++++ .+.+.|+||
T Consensus 153 Ii~~~g~~~ip~--------~~~~~Lkpg 173 (322)
T PRK13943 153 IFVTVGVDEVPE--------TWFTQLKEG 173 (322)
T ss_pred EEECCchHHhHH--------HHHHhcCCC
Confidence 999866665543 244567765
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.8e-10 Score=92.17 Aligned_cols=74 Identities=12% Similarity=0.041 Sum_probs=61.7
Q ss_pred EEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 184 ~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++|+|+.|++.|+++...... ....+++|+++|+++++.++++||+|++.++++|+.|.+ ++|+++.++||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~--~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL--RAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH--HHHHHHHHHcCcC
Confidence 4899999999999877542110 112468999999999987767999999999999999877 9999999999997
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-09 Score=97.62 Aligned_cols=98 Identities=18% Similarity=0.150 Sum_probs=73.2
Q ss_pred ceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
.+|||+|||+|.++..++... ..+|+++|.|+.+++.|++++.... ...+++|+++|+.+..+. .+||+|+|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~-----~~~~v~~~~~d~~~~~~~-~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ-----LEHRVEFIQSNLFEPLAG-QKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEECchhccCcC-CCccEEEEC
Confidence 689999999999999999443 2489999999999999999975421 112489999998765332 489999998
Q ss_pred hH-------------HhhcCc----------hhHHHHHHHHHhhccCC
Q 024811 238 WC-------------IGHLTD----------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~v-------------l~hltD----------~el~~~l~~~~~~LkPG 262 (262)
.+ +.|-+. .....++..+.+.|+||
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~g 237 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPN 237 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCC
Confidence 42 222221 13446899999999986
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-09 Score=96.69 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=74.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCC-CCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~-~~~~~~~~yDlI~ 235 (262)
.+.-|||||||+|-.+..|. ..+....+||+|+.|+++|.+.-- ..+++.+||- .+++.+++||.+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~-~~Gh~wiGvDiSpsML~~a~~~e~-----------egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLS-DSGHQWIGVDISPSMLEQAVEREL-----------EGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheec-cCCceEEeecCCHHHHHHHHHhhh-----------hcCeeeeecCCCCCCCCCccceEE
Confidence 46789999999999999988 667889999999999999997321 2578888884 4566678999999
Q ss_pred hhhHH---------hhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCI---------GHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl---------~hltD~el~~~l~~~~~~LkPG 262 (262)
|-.++ .|.+...+..||..+...|++|
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg 153 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRG 153 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccC
Confidence 85543 3444556678999999998876
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-09 Score=96.11 Aligned_cols=96 Identities=19% Similarity=0.120 Sum_probs=71.3
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC--CCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~--~~~yDlI 234 (262)
+.+|||+|||+|.++..++... ..+|+++|.|+.+++.|++++... .++|+++|+.++.+. .++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~---------~~~~~~~D~~~~l~~~~~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA---------GGTVHEGDLYDALPTALRGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---------CCEEEEeechhhcchhcCCCEeEE
Confidence 4589999999999999999443 347999999999999999997531 247899998765321 2579999
Q ss_pred hhhhHH------hhcCch------------------hHHHHHHHHHhhccCC
Q 024811 235 WVQWCI------GHLTDD------------------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl------~hltD~------------------el~~~l~~~~~~LkPG 262 (262)
+++.+. ..++++ -+..+++.+.+.|+||
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~g 209 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPG 209 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 998642 222211 1346888888999986
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-09 Score=101.74 Aligned_cols=99 Identities=10% Similarity=-0.020 Sum_probs=75.9
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CCCCCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~~~~~yDlI 234 (262)
+..+||||||+|..+..++... ...+.++|+++.|++.|.+++... ...++.++++|+..+ ..+++++|.|
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~------gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL------NLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 4589999999999999999543 247999999999999999887542 345899999998654 2334799999
Q ss_pred hhhhHHhhcCch----hHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDD----DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~----el~~~l~~~~~~LkPG 262 (262)
+++++..|.... -...++..+.++|+||
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpG 228 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLNEALRVLKPG 228 (390)
T ss_pred EEeCCCCccccchhhccHHHHHHHHHHHcCCC
Confidence 987654432221 1137999999999997
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-09 Score=94.97 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=73.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
...++||||+|-|.+|..++ ..|.+|.+.|.|+.|....+++ ..+ ..+..++...+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~k-------------g~~--vl~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKK-------------GFT--VLDIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhC-------------CCe--EEehhhhhccCCceEEEee
Confidence 45789999999999999999 8999999999999998777764 222 2344445444468999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++|-+..+|- .+|+.+++.|+|+
T Consensus 158 LNvLDRc~~P~--~LL~~i~~~l~p~ 181 (265)
T PF05219_consen 158 LNVLDRCDRPL--TLLRDIRRALKPN 181 (265)
T ss_pred hhhhhccCCHH--HHHHHHHHHhCCC
Confidence 99999999998 9999999999995
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-09 Score=94.28 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=80.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccC------CCCCcceEEEEcCCCCCCCCC-
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA------PDMHKATNFFCVPLQDFTPET- 228 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~------~~~~~~v~f~~~d~~~~~~~~- 228 (262)
.++.+||..|||.|.-...|+ ..+.+|++||+|+.+++.+.+......... .....+++++++|+.++.+..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La-~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLA-EQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHH-HTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCCCeEEEeCCCChHHHHHHH-HCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 356799999999999999999 667899999999999999843322110000 012346899999999987654
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++||+||=.-+|+=++.+.-.++.+.+.++|+||
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~ 148 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG 148 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 5799999888888888777778999999999986
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.2e-09 Score=96.53 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=76.7
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~yDl 233 (262)
.+.+||+||||.|.++..+++.. ..+|++||+++.+++.|++.+..... .-..++++++.+|..++-. +.++||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 46799999999999999999432 35899999999999999998754211 0124589999999765521 1358999
Q ss_pred hhhhhHHhhcCchhH--HHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDF--VSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el--~~~l~~~~~~LkPG 262 (262)
|++-..-.+.+...+ .+|++.+++.|+||
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pg 199 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPG 199 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 998654333222222 36999999999996
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.3e-09 Score=95.61 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=65.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.+|..|+ +.+.+|+++|.++.|++.+++++.. .++.++++|+.+++.+.-.+|.|+
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~-~~~~~v~avE~d~~~~~~~~~~~~~---------~~v~~i~~D~~~~~~~~~~~~~vv 110 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLL-ERAAKVTAVEIDRDLAPILAETFAE---------DNLTIIEGDALKVDLSELQPLKVV 110 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHH-HhCCcEEEEECCHHHHHHHHHhhcc---------CceEEEEChhhcCCHHHcCcceEE
Confidence 356799999999999999999 5567999999999999999987631 378999999998865421258888
Q ss_pred hhhHHhhcCchhHHHHH
Q 024811 236 VQWCIGHLTDDDFVSFF 252 (262)
Q Consensus 236 s~~vl~hltD~el~~~l 252 (262)
+|.. .+++.+-+.+++
T Consensus 111 ~NlP-Y~iss~ii~~~l 126 (272)
T PRK00274 111 ANLP-YNITTPLLFHLL 126 (272)
T ss_pred EeCC-ccchHHHHHHHH
Confidence 8866 344443333343
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.6e-09 Score=89.84 Aligned_cols=91 Identities=16% Similarity=0.091 Sum_probs=65.4
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-------
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~------- 225 (262)
..++.+|||+|||+|.++..++..... +|+++|+|+.+ .. .++.+++.|+.+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~-----------~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI-----------ENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC-----------CCceEEEeeCCChhHHHHHHH
Confidence 346789999999999999999954433 59999999865 11 24678888887642
Q ss_pred -CCCCccchhhhhhH--------HhhcCc-hhHHHHHHHHHhhccCC
Q 024811 226 -PETGRYDVIWVQWC--------IGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 -~~~~~yDlI~s~~v--------l~hltD-~el~~~l~~~~~~LkPG 262 (262)
...++||+|++..+ +.|+.. ..+..+|..+.+.|+||
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg 139 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK 139 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC
Confidence 12357999998643 333322 22347999999999997
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-09 Score=90.92 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=62.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+..|+|+|||||+++...+.-....|.+||+++++++++++|... ...++.|+++|+.++. .++|.+++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-------l~g~v~f~~~dv~~~~---~~~dtvim 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-------LLGDVEFVVADVSDFR---GKFDTVIM 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh-------hCCceEEEEcchhhcC---CccceEEE
Confidence 4667999999999999999844347899999999999999999864 3457999999999984 57999999
Q ss_pred hhHH
Q 024811 237 QWCI 240 (262)
Q Consensus 237 ~~vl 240 (262)
|.++
T Consensus 115 NPPF 118 (198)
T COG2263 115 NPPF 118 (198)
T ss_pred CCCC
Confidence 8764
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.3e-09 Score=93.94 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=74.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
.+.+||++|||+|.++..+++.. ..+|+++|+++.+++.|++.+..... .-..++++++..|..++-. ..++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccEE
Confidence 35599999999999999998443 46899999999999999998753211 0123467888888765421 13689999
Q ss_pred hhhhHHhhcCchh--HHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDD--FVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~e--l~~~l~~~~~~LkPG 262 (262)
++......-+... ..+|++.+++.|+||
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pg 179 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNED 179 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCC
Confidence 9875422222222 247999999999997
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-09 Score=95.36 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=74.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
++.+|||||||+|.++..++... ..+|++||+++++++.|++++... ....+++++.+|..++-. ..++||+|
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-----~~~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP-----ENGERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC-----CCCCceEEEECCHHHHHHhCCCCCCEE
Confidence 45689999999999999999443 247999999999999999987532 123578999999876522 23589999
Q ss_pred hhhhH-HhhcCch-hHHHHHHHHHhhccCC
Q 024811 235 WVQWC-IGHLTDD-DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~v-l~hltD~-el~~~l~~~~~~LkPG 262 (262)
++... -...+.. ...+|+++|++.|+||
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pg 170 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSD 170 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCC
Confidence 97531 1111111 1248999999999997
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.8e-09 Score=93.16 Aligned_cols=84 Identities=11% Similarity=0.104 Sum_probs=67.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.+|..|+ +.+.+|+++|.++.|++.+++++.. ..++.++++|+.+++.+ .||.|+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~-~~~~~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~~~~--~~d~Vv 96 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELA-KRAKKVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKVDLP--EFNKVV 96 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHH-HhCCEEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccCCch--hceEEE
Confidence 357799999999999999999 5577899999999999999998742 24789999999987653 589999
Q ss_pred hhhHHhhcCchhHHHH
Q 024811 236 VQWCIGHLTDDDFVSF 251 (262)
Q Consensus 236 s~~vl~hltD~el~~~ 251 (262)
+|.+. +.+.+.+..+
T Consensus 97 ~NlPy-~i~s~~~~~l 111 (258)
T PRK14896 97 SNLPY-QISSPITFKL 111 (258)
T ss_pred EcCCc-ccCcHHHHHH
Confidence 99774 3444333333
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-08 Score=89.82 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=72.8
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
+.++.+|||||||+|+.+.-|+ +...+|.-||..++..+.|++++... ...|+.+.++|-..--++..+||.|
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla-~l~~~V~siEr~~~L~~~A~~~L~~l------g~~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLA-RLVGRVVSIERIEELAEQARRNLETL------GYENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHH-HHhCeEEEEEEcHHHHHHHHHHHHHc------CCCceEEEECCcccCCCCCCCcCEE
Confidence 4578999999999999999999 77779999999999999999999765 3457999999987655555799999
Q ss_pred hhhhHHhhcCch
Q 024811 235 WVQWCIGHLTDD 246 (262)
Q Consensus 235 ~s~~vl~hltD~ 246 (262)
+..-....+++.
T Consensus 143 ~Vtaaa~~vP~~ 154 (209)
T COG2518 143 IVTAAAPEVPEA 154 (209)
T ss_pred EEeeccCCCCHH
Confidence 999887777763
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=98.14 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=75.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|..|..++... ..+|+++|.|+.|++.+++++... ...++.++++|+.++.+. ++||+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~------g~~~v~~~~~Da~~~~~~-~~fD~ 321 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL------GITIIETIEGDARSFSPE-EQPDA 321 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh------CCCeEEEEeCcccccccC-CCCCE
Confidence 356799999999999999888433 347999999999999999998653 234689999999887543 68999
Q ss_pred hhhhh------HH-------hhcCchhH-------HHHHHHHHhhccCC
Q 024811 234 IWVQW------CI-------GHLTDDDF-------VSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~------vl-------~hltD~el-------~~~l~~~~~~LkPG 262 (262)
|++-. .+ .+++..++ ..+|.++.+.|+||
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99521 11 12232222 25899999999997
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=93.38 Aligned_cols=95 Identities=20% Similarity=0.155 Sum_probs=67.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|-++...++-....|.++|.+|..++.|++|+..- .....+..-..+..+.. ..++||+|++
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N-----~v~~~~~~~~~~~~~~~-~~~~~DvIVA 235 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN-----GVELLVQAKGFLLLEVP-ENGPFDVIVA 235 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHc-----CCchhhhcccccchhhc-ccCcccEEEe
Confidence 57899999999999999999555567999999999999999997531 11111112223333332 2269999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|- +.++ ++++...+.+.|+||
T Consensus 236 NI----LA~v-l~~La~~~~~~lkpg 256 (300)
T COG2264 236 NI----LAEV-LVELAPDIKRLLKPG 256 (300)
T ss_pred hh----hHHH-HHHHHHHHHHHcCCC
Confidence 95 3332 347888889999986
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.6e-09 Score=101.48 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=72.0
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
..+|||+|||+|.++..++... ..+|+++|.|+.+++.|++++.... ...+++++++|+.+..+ .++||+|+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~-----l~~~v~~~~~D~~~~~~-~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE-----VTDRIQIIHSNWFENIE-KQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC-----CccceeeeecchhhhCc-CCCccEEEE
Confidence 4689999999999999998543 3589999999999999999975321 12368899999865433 358999999
Q ss_pred hhHHh--------------hcC------c----hhHHHHHHHHHhhccCC
Q 024811 237 QWCIG--------------HLT------D----DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~--------------hlt------D----~el~~~l~~~~~~LkPG 262 (262)
+.+.. |-+ . .-...+++.+.+.|+||
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~g 262 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPN 262 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCC
Confidence 75311 100 0 01235778888899986
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-08 Score=97.16 Aligned_cols=100 Identities=17% Similarity=0.085 Sum_probs=73.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~yD 232 (262)
.++.+|||+|||+|..|..++.... .+|+++|.|+.|++.+++++... +-.++++++|+.+... ..++||
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-------g~~~~~~~~D~~~~~~~~~~~~fD 315 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-------GLKATVIVGDARDPAQWWDGQPFD 315 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-------CCCeEEEEcCcccchhhcccCCCC
Confidence 3578999999999999999995433 48999999999999999998642 1236789999986532 235799
Q ss_pred hhhhhhH---Hhh---------c-Cchh-------HHHHHHHHHhhccCC
Q 024811 233 VIWVQWC---IGH---------L-TDDD-------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~v---l~h---------l-tD~e-------l~~~l~~~~~~LkPG 262 (262)
.|++..+ .++ . +..+ ..++|.++.+.|+||
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG 365 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG 365 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9995431 111 1 1111 236899999999997
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.6e-09 Score=96.23 Aligned_cols=75 Identities=15% Similarity=0.053 Sum_probs=62.6
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI~s 236 (262)
+.+|||+|||+|.++..|+ ..+.+|.++|.|+.|++.|++++... ...+++|+++|+.++.. ..+.||+|++
T Consensus 174 ~~~VLDl~cG~G~~sl~la-~~~~~V~gvD~s~~av~~A~~n~~~~------~l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCA-TPGMQLTGIEISAEAIACAKQSAAEL------GLTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred CCEEEEccCCCCHHHHHHH-hcCCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 5789999999999999999 56789999999999999999997542 22478999999987643 2247999999
Q ss_pred hhH
Q 024811 237 QWC 239 (262)
Q Consensus 237 ~~v 239 (262)
+.+
T Consensus 247 dPP 249 (315)
T PRK03522 247 NPP 249 (315)
T ss_pred CCC
Confidence 865
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=93.61 Aligned_cols=71 Identities=24% Similarity=0.157 Sum_probs=56.2
Q ss_pred eeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
+|||+|||+|-++..++ ..++ +|+++|+|+.+++.|++|+... ...++.++.+|+.+- -.++||+|+||
T Consensus 113 ~ilDlGTGSG~iai~la-~~~~~~~V~a~Dis~~Al~~A~~Na~~~------~l~~~~~~~~dlf~~--~~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALA-KEGPDAEVIAVDISPDALALARENAERN------GLVRVLVVQSDLFEP--LRGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHH-hhCcCCeEEEEECCHHHHHHHHHHHHHc------CCccEEEEeeecccc--cCCceeEEEeC
Confidence 79999999999999999 5555 8999999999999999998642 113455666666543 23589999999
Q ss_pred hH
Q 024811 238 WC 239 (262)
Q Consensus 238 ~v 239 (262)
.+
T Consensus 184 PP 185 (280)
T COG2890 184 PP 185 (280)
T ss_pred CC
Confidence 75
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=97.23 Aligned_cols=101 Identities=13% Similarity=0.071 Sum_probs=76.9
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----CCCC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~----~~~~ 229 (262)
.++.+|||+|||+|..|..++.... .+|+++|.++.|++.+++++... ...++.+++.|..++. ...+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~------g~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL------GLKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc------CCCeEEEEeCChhhcccccccccc
Confidence 3578999999999999999995432 37999999999999999998653 2346899999998764 2236
Q ss_pred ccchhhhhh------HHhhcCch-------h-------HHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQW------CIGHLTDD-------D-------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~------vl~hltD~-------e-------l~~~l~~~~~~LkPG 262 (262)
+||.|++.- +++|-++. + ..++|.++.+.||||
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg 377 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG 377 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 899999632 34443331 1 246899999999997
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-08 Score=94.60 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=74.2
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhh--cccccccCCCCCcceEEEEcCCCCCCC-CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~--l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yD 232 (262)
.+.+||++|||+|..+..+++.. ..+|++||++++|++.|++. +..... ..-..++++++.+|..++-. ..++||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~-~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNK-SAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcc-ccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 46799999999999999999432 36899999999999999972 211100 01124688999999988632 236899
Q ss_pred hhhhhhH--Hhh-cCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWC--IGH-LTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~v--l~h-ltD~el~~~l~~~~~~LkPG 262 (262)
+|++... ... ...---.+|++.|++.|+||
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg 261 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTED 261 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCC
Confidence 9999842 111 11111136999999999997
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.4e-09 Score=99.45 Aligned_cols=77 Identities=23% Similarity=0.211 Sum_probs=62.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----CCCCcc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~----~~~~~y 231 (262)
.++.+|||+|||+|.++..|+ +.+.+|+++|.|+.|++.|++++... ...+++|+++|+.++. ...++|
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la-~~~~~V~gvD~s~~al~~A~~n~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLA-RQAAEVVGVEGVEAMVERARENARRN------GLDNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHH-HhCCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEeChHHhhhhhhhhcCCC
Confidence 356799999999999999999 55789999999999999999987532 2246899999997642 123579
Q ss_pred chhhhhhH
Q 024811 232 DVIWVQWC 239 (262)
Q Consensus 232 DlI~s~~v 239 (262)
|+|+++.+
T Consensus 369 D~Vi~dPP 376 (443)
T PRK13168 369 DKVLLDPP 376 (443)
T ss_pred CEEEECcC
Confidence 99998764
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-08 Score=91.99 Aligned_cols=96 Identities=10% Similarity=-0.124 Sum_probs=67.7
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC---CCCCC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETG 229 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~---~~~~~ 229 (262)
+.++.+|||+|||+|..+.+++.... ..|.+||+|+.|++...+.... ..++.++..|+..- ....+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--------r~NI~~I~~Da~~p~~y~~~~~ 201 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--------RPNIVPIIEDARYPQKYRMLVP 201 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCCEEEECCccChhhhhcccC
Confidence 45678999999999999999994443 3699999999866554444321 13678888887642 11125
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++|+|++... . +| +...++.++.+.||||
T Consensus 202 ~vDvV~~Dva--~-pd-q~~il~~na~r~LKpG 230 (293)
T PTZ00146 202 MVDVIFADVA--Q-PD-QARIVALNAQYFLKNG 230 (293)
T ss_pred CCCEEEEeCC--C-cc-hHHHHHHHHHHhccCC
Confidence 7999998763 2 22 2225677899999997
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-08 Score=89.25 Aligned_cols=95 Identities=13% Similarity=0.177 Sum_probs=81.1
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
.-.++|||||.|.+..+|..+...+++.+|.|-.|++.++..-. ..-...+..+|-+.+++.++++|+|+++
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd--------p~i~~~~~v~DEE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD--------PSIETSYFVGDEEFLDFKENSVDLIISS 144 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC--------CceEEEEEecchhcccccccchhhhhhh
Confidence 34799999999999999997778899999999999999987421 2235677788888888877899999999
Q ss_pred hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 238 WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++||.+|-. .-+.+|...|||.
T Consensus 145 lslHW~NdLP--g~m~~ck~~lKPD 167 (325)
T KOG2940|consen 145 LSLHWTNDLP--GSMIQCKLALKPD 167 (325)
T ss_pred hhhhhhccCc--hHHHHHHHhcCCC
Confidence 9999999965 7888999999994
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-08 Score=95.99 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=75.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yD 232 (262)
.++.+|||+|||+|..|..++... ..+|+++|.|+.+++.+++++... ...++.++..|..++. ...++||
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~------g~~~v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL------KLSSIEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhhhhhhhhccCC
Confidence 457899999999999999999543 357999999999999999998653 2246889999998764 2236899
Q ss_pred hhhhhh---HHhhc----------Cchh-------HHHHHHHHHhhccCC
Q 024811 233 VIWVQW---CIGHL----------TDDD-------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~---vl~hl----------tD~e-------l~~~l~~~~~~LkPG 262 (262)
.|++.. .++.+ +..+ ..++|.++.+.|+||
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999632 12222 1111 135799999999997
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-08 Score=99.72 Aligned_cols=105 Identities=18% Similarity=0.095 Sum_probs=75.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhh--cccccccCCCCCcceEEEEcCCCCCCC-CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~--l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yD 232 (262)
++.+|||+|||+|.++..+++... .+|++||+++++++.|+++ +...... .-..++++++..|..++-. .+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGG-ALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcc-ccCCCceEEEEChHHHHHHhCCCCCC
Confidence 467999999999999999994333 6899999999999999994 3221100 0123578999999887632 236899
Q ss_pred hhhhhhHHhhcCch-h--HHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDD-D--FVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~-e--l~~~l~~~~~~LkPG 262 (262)
+|++.......+.. . -.+|++.+++.|+||
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg 408 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPD 408 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCC
Confidence 99998643222211 0 125999999999996
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-08 Score=90.48 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=67.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc---
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD--- 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD--- 232 (262)
.++.+|||+|||+|.+|..|+ +.+..|+++|+++.|++.+++++.. ..+++++++|+.++++. .||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~-~~~~~v~~iE~d~~~~~~l~~~~~~--------~~~v~v~~~D~~~~~~~--~~d~~~ 96 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLL-KRAKKVTAIEIDPRLAEILRKLLSL--------YERLEVIEGDALKVDLP--DFPKQL 96 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHH-HhCCcEEEEECCHHHHHHHHHHhCc--------CCcEEEEECchhcCChh--HcCCcc
Confidence 356799999999999999999 6678899999999999999987642 24789999999988653 577
Q ss_pred hhhhhhHHhhcCchhHHHHH
Q 024811 233 VIWVQWCIGHLTDDDFVSFF 252 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l 252 (262)
+|+++.. .|++.+-+.+++
T Consensus 97 ~vvsNlP-y~i~~~il~~ll 115 (253)
T TIGR00755 97 KVVSNLP-YNISSPLIFKLL 115 (253)
T ss_pred eEEEcCC-hhhHHHHHHHHh
Confidence 8888876 455655544554
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.1e-08 Score=94.99 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=74.8
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yD 232 (262)
.++.+|||+|||+|..|..++... ..+|+++|+++.+++.+++++... ...+++++++|+.++.. -.++||
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL------GLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCCcccccchhcccCC
Confidence 356799999999999999999543 347999999999999999998643 22458999999987632 125899
Q ss_pred hhhhhhH------HhhcC-------chhH-------HHHHHHHHhhccCC
Q 024811 233 VIWVQWC------IGHLT-------DDDF-------VSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~v------l~hlt-------D~el-------~~~l~~~~~~LkPG 262 (262)
+|++... +.|-+ ..++ ..+|..+.+.|+||
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9997532 11111 1111 35899999999997
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.1e-09 Score=89.78 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=62.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI~ 235 (262)
.+.+|||+|||+|.++..++.+...+|++||.++.+++.++++++.. ...+++++++|+.++.+ ...+||+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~------~~~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATL------KAGNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEEchHHHHHhhcCCCceEEE
Confidence 35699999999999999766466679999999999999999998653 12368999999876532 224799999
Q ss_pred hhhHH
Q 024811 236 VQWCI 240 (262)
Q Consensus 236 s~~vl 240 (262)
++.++
T Consensus 127 ~DPPy 131 (199)
T PRK10909 127 VDPPF 131 (199)
T ss_pred ECCCC
Confidence 99884
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.2e-08 Score=94.51 Aligned_cols=113 Identities=17% Similarity=0.072 Sum_probs=78.4
Q ss_pred HHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 138 s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
++.++...+. ..++.+|||+|||+|..|..++.... .+|+++|.++.+++.+++++.... ....+.+
T Consensus 226 ~s~~~~~~L~-------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g-----~~~~v~~ 293 (426)
T TIGR00563 226 SAQWVATWLA-------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG-----LTIKAET 293 (426)
T ss_pred HHHHHHHHhC-------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEE
Confidence 4445555543 33578999999999999999994432 479999999999999999986531 1113444
Q ss_pred EEcCCCCCCC--CCCccchhhhh------hHHhhcCch-------h-------HHHHHHHHHhhccCC
Q 024811 217 FCVPLQDFTP--ETGRYDVIWVQ------WCIGHLTDD-------D-------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 217 ~~~d~~~~~~--~~~~yDlI~s~------~vl~hltD~-------e-------l~~~l~~~~~~LkPG 262 (262)
.++|..+..+ ..++||.|++. .++++.++. + ..++|.++.++|+||
T Consensus 294 ~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 294 KDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred eccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6777655432 34689999852 245554441 1 246999999999997
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-08 Score=92.75 Aligned_cols=89 Identities=12% Similarity=0.120 Sum_probs=68.3
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||||||+|.+|..|+ ..+.+|+++|.++.|++.+++++.... ...+++++++|+.++.. ..||.|
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll-~~~~~V~avEiD~~li~~l~~~~~~~~-----~~~~v~ii~~Dal~~~~--~~~d~V 105 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLL-QLAKKVIAIEIDPRMVAELKKRFQNSP-----LASKLEVIEGDALKTEF--PYFDVC 105 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHH-HhCCcEEEEECCHHHHHHHHHHHHhcC-----CCCcEEEEECCHhhhcc--cccCEE
Confidence 3457899999999999999999 557789999999999999999875321 12478999999988754 369999
Q ss_pred hhhhHHhhcCchhHHHHH
Q 024811 235 WVQWCIGHLTDDDFVSFF 252 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l 252 (262)
++|.+ .+++.+.+..++
T Consensus 106 vaNlP-Y~Istpil~~ll 122 (294)
T PTZ00338 106 VANVP-YQISSPLVFKLL 122 (294)
T ss_pred EecCC-cccCcHHHHHHH
Confidence 98865 344444433333
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.1e-08 Score=88.84 Aligned_cols=101 Identities=11% Similarity=-0.010 Sum_probs=74.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|..|..++.... ..|+++|.++.+++.+++++... ...++.+++.|...+....+.||.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC------GVLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc------CCCcEEEecCCHHHhhhhccCCCE
Confidence 3578999999999999999984432 37999999999999999998653 224688899998776433357999
Q ss_pred hhhhhH------Hhh-------cCchh-------HHHHHHHHHhhccCC
Q 024811 234 IWVQWC------IGH-------LTDDD-------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~v------l~h-------ltD~e-------l~~~l~~~~~~LkPG 262 (262)
|++..+ +.+ .+..+ ..++|+.+.+.|+||
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 192 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG 192 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 986421 111 11111 135999999999996
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.2e-09 Score=91.52 Aligned_cols=84 Identities=19% Similarity=0.092 Sum_probs=62.7
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
+.++.+|||||||+|+.|.-|+.-.++ .|..||..+..++.|++++... ...++.++++|...-.+...+||
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~------~~~nv~~~~gdg~~g~~~~apfD 143 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL------GIDNVEVVVGDGSEGWPEEAPFD 143 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH------TTHSEEEEES-GGGTTGGG-SEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh------ccCceeEEEcchhhccccCCCcC
Confidence 557899999999999999999933333 5889999999999999999764 23488999999766545557999
Q ss_pred hhhhhhHHhhcC
Q 024811 233 VIWVQWCIGHLT 244 (262)
Q Consensus 233 lI~s~~vl~hlt 244 (262)
.|++...+..++
T Consensus 144 ~I~v~~a~~~ip 155 (209)
T PF01135_consen 144 RIIVTAAVPEIP 155 (209)
T ss_dssp EEEESSBBSS--
T ss_pred EEEEeeccchHH
Confidence 999998765554
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-08 Score=93.41 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=70.5
Q ss_pred CCceeeEeeccccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCC----CCcceEEEEcCCCCC------C
Q 024811 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPD----MHKATNFFCVPLQDF------T 225 (262)
Q Consensus 157 ~~~~VLDlGcGtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~----~~~~v~f~~~d~~~~------~ 225 (262)
++.+|||+|||-|. +.+... .....+.++|+|...|+.|+++....+..... ..-...|+.+|...- .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~-~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQK-AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 57899999999655 666555 66788999999999999999988322111000 012456788877542 2
Q ss_pred CCCCccchhhhhhHHhhcC-chh-HHHHHHHHHhhccCC
Q 024811 226 PETGRYDVIWVQWCIGHLT-DDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 ~~~~~yDlI~s~~vl~hlt-D~e-l~~~l~~~~~~LkPG 262 (262)
+...+||+|-||+++||.= +++ ...+|+++...|+||
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 2225999999999999984 333 456999999999997
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.2e-08 Score=95.79 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=73.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~~yD 232 (262)
++.+|||+|||+|.++...+.....+|++||.|+.+++.|++++....- ...+++|+++|+.++-. ..++||
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl----~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKL----DLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 3678999999999999887744455899999999999999999864210 11368999999987621 235899
Q ss_pred hhhhhhHHhhcCc--------hhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTD--------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD--------~el~~~l~~~~~~LkPG 262 (262)
+|++..+. ...+ ..+..++..+.++|+||
T Consensus 296 lVilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~g 332 (396)
T PRK15128 296 VIVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPG 332 (396)
T ss_pred EEEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999653 1111 12345666788888886
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.1e-08 Score=84.60 Aligned_cols=95 Identities=16% Similarity=0.061 Sum_probs=77.6
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
+.++.+++|||||||.++..++ ..+ .+|++||-++++++..++|++.- ..+++.++.++..+.-+...+||
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~f------g~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARF------GVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHh------CCCcEEEEeccchHhhcCCCCCC
Confidence 4578899999999999999999 554 47999999999999999998653 35689999999987744333799
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.|+.... ..++ .+|+.|...|+||
T Consensus 105 aiFIGGg-~~i~-----~ile~~~~~l~~g 128 (187)
T COG2242 105 AIFIGGG-GNIE-----EILEAAWERLKPG 128 (187)
T ss_pred EEEECCC-CCHH-----HHHHHHHHHcCcC
Confidence 9999876 3332 7888999999886
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-08 Score=89.68 Aligned_cols=136 Identities=17% Similarity=0.261 Sum_probs=92.8
Q ss_pred hhHHhhhhccchhhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCC----c
Q 024811 107 REGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN----E 182 (262)
Q Consensus 107 ~~~~~yW~~~~~~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~----~ 182 (262)
..+..||+......+ ..+-..++.|..-+++.++... .+..+||++|||.|+..-+|+ +..+ .
T Consensus 33 ~~~~k~wD~fy~~~~-----------~rFfkdR~wL~~Efpel~~~~~-~~~~~ilEvGCGvGNtvfPll-~~~~n~~l~ 99 (264)
T KOG2361|consen 33 REASKYWDTFYKIHE-----------NRFFKDRNWLLREFPELLPVDE-KSAETILEVGCGVGNTVFPLL-KTSPNNRLK 99 (264)
T ss_pred cchhhhhhhhhhhcc-----------ccccchhHHHHHhhHHhhCccc-cChhhheeeccCCCcccchhh-hcCCCCCeE
Confidence 356889976543332 1111234555544444433221 123389999999999999999 5444 4
Q ss_pred EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC----CCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhh
Q 024811 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVN 258 (262)
Q Consensus 183 V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~----~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~ 258 (262)
|.+.|.||.+++.-+++..... .++.-...|+.. -+++.+++|.|++-++|.-++.+...++++++.++
T Consensus 100 v~acDfsp~Ai~~vk~~~~~~e-------~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~l 172 (264)
T KOG2361|consen 100 VYACDFSPRAIELVKKSSGYDE-------SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTL 172 (264)
T ss_pred EEEcCCChHHHHHHHhccccch-------hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHH
Confidence 7888999999999999865421 223333334322 12445899999999999999988888999999999
Q ss_pred ccCC
Q 024811 259 HSQT 262 (262)
Q Consensus 259 LkPG 262 (262)
||||
T Consensus 173 lKPG 176 (264)
T KOG2361|consen 173 LKPG 176 (264)
T ss_pred hCCC
Confidence 9998
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-08 Score=101.76 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=75.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..++.....+|++||.|+.+++.|++|+..-.- ...+++|+++|+.++.. ..++||+|+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~----~~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGL----SGRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CccceEEEEccHHHHHHHcCCCcCEEE
Confidence 3679999999999999999944345799999999999999999864210 11368999999877531 135899999
Q ss_pred hhhH-Hhh------cC--chhHHHHHHHHHhhccCC
Q 024811 236 VQWC-IGH------LT--DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~v-l~h------lt--D~el~~~l~~~~~~LkPG 262 (262)
+... +.. .. ..+...++..+.++|+||
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g 649 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPG 649 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCC
Confidence 9754 111 10 123457888889999987
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-08 Score=92.27 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=61.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|-++...++-...+|.++|.+|.+++.|++|+..- .... ++......+.. .++||+|++
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N-----~~~~--~~~v~~~~~~~--~~~~dlvvA 231 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELN-----GVED--RIEVSLSEDLV--EGKFDLVVA 231 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHT-----T-TT--CEEESCTSCTC--CS-EEEEEE
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHc-----CCCe--eEEEEEecccc--cccCCEEEE
Confidence 56799999999999999999444567999999999999999997541 1112 33222333332 279999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|-...= +..++..+.+.|+||
T Consensus 232 NI~~~v-----L~~l~~~~~~~l~~~ 252 (295)
T PF06325_consen 232 NILADV-----LLELAPDIASLLKPG 252 (295)
T ss_dssp ES-HHH-----HHHHHHHCHHHEEEE
T ss_pred CCCHHH-----HHHHHHHHHHhhCCC
Confidence 864222 235666666677664
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.3e-08 Score=85.89 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=78.7
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
-.||..++. ..++.+|||+|||+|..+..++... ..+|+.+|.++++++.|+++++.+. ...++++
T Consensus 57 g~~L~~l~~-------~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-----l~~~i~~ 124 (234)
T PLN02781 57 GLFLSMLVK-------IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-----VDHKINF 124 (234)
T ss_pred HHHHHHHHH-------HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEE
Confidence 456655554 1246799999999999999888433 2479999999999999999987642 2246899
Q ss_pred EEcCCCCCCC------CCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 217 FCVPLQDFTP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 217 ~~~d~~~~~~------~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+|+.+.-+ +.++||+|++... .+....++..+.+.|+||
T Consensus 125 ~~gda~~~L~~l~~~~~~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 125 IQSDALSALDQLLNNDPKPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVG 171 (234)
T ss_pred EEccHHHHHHHHHhCCCCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCC
Confidence 9999977521 1358999987521 133447888899999997
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.3e-08 Score=92.76 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=61.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~~yD 232 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++... ...++.|+.+|+.++.+ ..++||
T Consensus 292 ~~~~vLDl~cG~G~~sl~la-~~~~~V~~vE~~~~av~~a~~n~~~~------~~~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLA-KQAKSVVGIEVVPESVEKAQQNAELN------GIANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHH-HhCCEEEEEEcCHHHHHHHHHHHHHh------CCCceEEEeCCHHHHHHHHHhcCCCCC
Confidence 45799999999999999999 56778999999999999999997542 23478999999876421 124799
Q ss_pred hhhhhhH
Q 024811 233 VIWVQWC 239 (262)
Q Consensus 233 lI~s~~v 239 (262)
+|++..+
T Consensus 365 ~vi~dPP 371 (431)
T TIGR00479 365 VLLLDPP 371 (431)
T ss_pred EEEECcC
Confidence 9997654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.1e-08 Score=90.80 Aligned_cols=76 Identities=13% Similarity=0.020 Sum_probs=62.5
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~s 236 (262)
+.+|||+|||+|.++..++ ..+.+|.+||.++.+++.|++++... ...+++|+++|+.++... ..+||+|++
T Consensus 234 ~~~vLDL~cG~G~~~l~la-~~~~~v~~vE~~~~av~~a~~N~~~~------~~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCA-GPDTQLTGIEIESEAIACAQQSAQML------GLDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred CCEEEEccCCccHHHHHHh-hcCCeEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 5689999999999999999 56789999999999999999997542 224789999999876431 246999999
Q ss_pred hhHH
Q 024811 237 QWCI 240 (262)
Q Consensus 237 ~~vl 240 (262)
..+-
T Consensus 307 DPPr 310 (374)
T TIGR02085 307 NPPR 310 (374)
T ss_pred CCCC
Confidence 9773
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-07 Score=81.42 Aligned_cols=99 Identities=14% Similarity=0.174 Sum_probs=72.0
Q ss_pred ceeeEeeccccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~-V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
.+|||+|||.|.+...|++..|.. .++||-|++.++.|+...+.- .....++|.+.|+.+-....++||+|.--
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~-----~~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD-----GFSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc-----CCCcceeEEEeeccCCcccccceeEEeec
Confidence 399999999999999999877776 999999999999988765431 12234999999998754444678877654
Q ss_pred hH-----Hh-hcCchhHHHHHHHHHhhccCC
Q 024811 238 WC-----IG-HLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~v-----l~-hltD~el~~~l~~~~~~LkPG 262 (262)
.. |+ -..+..+..++..+.++|+||
T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~ 174 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPG 174 (227)
T ss_pred CceeeeecCCCCcccceeeehhhHhhccCCC
Confidence 32 22 122222345788888888886
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-07 Score=98.82 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=61.2
Q ss_pred CceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccc----------cCCCCCcceEEEEcCCCCCCC
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENH----------MAPDMHKATNFFCVPLQDFTP 226 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~----------~~~~~~~~v~f~~~d~~~~~~ 226 (262)
+.+|||+|||+|.++..|+.... .+|+++|.|+.+++.|++|+..-.- ..+....+++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 45899999999999999995432 4799999999999999999853100 000112368999999987543
Q ss_pred CC-CccchhhhhhH
Q 024811 227 ET-GRYDVIWVQWC 239 (262)
Q Consensus 227 ~~-~~yDlI~s~~v 239 (262)
.. .+||+||||.+
T Consensus 199 ~~~~~fDlIVSNPP 212 (1082)
T PLN02672 199 DNNIELDRIVGCIP 212 (1082)
T ss_pred ccCCceEEEEECCC
Confidence 21 36999999964
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-07 Score=79.30 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=67.1
Q ss_pred CCceeeEeeccccH----HHHHHHH--h-cCC---cEEEEeCCHHHHHHHHhhcccc--------------c-cc-C---
Q 024811 157 QHLVALDCGSGIGR----ITKNLLI--R-YFN---EVDLLEPVSHFLDAARESLAPE--------------N-HM-A--- 207 (262)
Q Consensus 157 ~~~~VLDlGcGtG~----lt~~La~--~-~~~---~V~~VD~s~~mld~Ar~~l~~a--------------~-~~-~--- 207 (262)
+..+|...||++|- ++..|.. . ... +|.++|+|+.+|+.|++-+=.. - .. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 46899999999996 3333332 0 122 7899999999999998632000 0 00 0
Q ss_pred ---CCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 208 ---PDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 208 ---~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
...-..++|...|+.+..+..+.||+|+|.+|+.|++++...++++++.+.|+||
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pg 168 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPG 168 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEE
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCC
Confidence 0112478999999998434457999999999999999998889999999999996
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-07 Score=86.23 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=84.7
Q ss_pred hHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 137 ~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
.-.++++..|.+.. .++...++|+|||-|.-...--+.....+.++|+.+.-|+.|+++...-..+.....=.+.|
T Consensus 101 nfNNwIKs~LI~~y----~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f 176 (389)
T KOG1975|consen 101 NFNNWIKSVLINLY----TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVF 176 (389)
T ss_pred hhhHHHHHHHHHHH----hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEE
Confidence 33456666554322 33577899999998886666554666789999999999999998765432221111124678
Q ss_pred EEcCCCC------CCCCCCccchhhhhhHHhhc-Cc-hhHHHHHHHHHhhccCC
Q 024811 217 FCVPLQD------FTPETGRYDVIWVQWCIGHL-TD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 217 ~~~d~~~------~~~~~~~yDlI~s~~vl~hl-tD-~el~~~l~~~~~~LkPG 262 (262)
+.+|-.. +++.+.+||+|-||+++||. .. +....+|++++..|+||
T Consensus 177 ~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG 230 (389)
T KOG1975|consen 177 IAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPG 230 (389)
T ss_pred EEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence 8877643 22333349999999999986 33 44557999999999998
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1e-06 Score=72.43 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=63.2
Q ss_pred CCceeeEeeccccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchh
Q 024811 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI 234 (262)
++.+|||+|||+|. ++..|. +.+.+|+++|.++..++.++++ .++++..|+.+-.++ -..+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~-------------~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKL-------------GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHh-------------CCeEEECcCCCCCHHHHhcCCEE
Confidence 35789999999996 999888 7788999999999999999886 357888999876543 1568998
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhh
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVN 258 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~ 258 (262)
+|.. +.+|+...+-++++-
T Consensus 82 ysir-----pp~el~~~~~~la~~ 100 (134)
T PRK04148 82 YSIR-----PPRDLQPFILELAKK 100 (134)
T ss_pred EEeC-----CCHHHHHHHHHHHHH
Confidence 8764 244555555555543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.1e-07 Score=77.42 Aligned_cols=100 Identities=15% Similarity=0.057 Sum_probs=64.0
Q ss_pred CCceeeEeeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----CCCCcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~----~~~~~y 231 (262)
++.+|||+|||+|-.+..++.. ...+|++.|..+ .++..+.++..-.. ....++.+...|+.+-. ....+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-SSB
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccccccC
Confidence 5779999999999999999944 267899999999 99999998854110 12346778888876521 123589
Q ss_pred chhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|+++-+++.- ..+..+++.+.++|+|+
T Consensus 121 D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~ 149 (173)
T PF10294_consen 121 DVILASDVLYDE--ELFEPLVRTLKRLLKPN 149 (173)
T ss_dssp SEEEEES--S-G--GGHHHHHHHHHHHBTT-
T ss_pred CEEEEecccchH--HHHHHHHHHHHHHhCCC
Confidence 999999998763 33448999999998874
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.1e-07 Score=81.03 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=50.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHH-HHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~-Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.+.+|||+|||||.+|..|++....+|++||+++.|+.. .+++..... ....|++ ..+++++.++-..||+++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~----~~~~ni~--~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKV----LERTNIR--YVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeE----eecCCcc--cCCHhHcCCCceeeeEEE
Confidence 466899999999999999995435689999999988875 444321000 0111222 334444433335799888
Q ss_pred hhhHH
Q 024811 236 VQWCI 240 (262)
Q Consensus 236 s~~vl 240 (262)
++.++
T Consensus 149 iS~~~ 153 (228)
T TIGR00478 149 ISLIS 153 (228)
T ss_pred eehHh
Confidence 87654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=4e-07 Score=85.89 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=58.6
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-----------
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----------- 227 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~----------- 227 (262)
.+|||+|||+|.++..|+ +.+.+|++||.|+.|++.|++++... ...+++|+++|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~la-~~~~~v~~vE~~~~av~~a~~n~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALA-QNFRRVLATEIAKPSVNAAQYNIAAN------NIDNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CcEEEEeccccHHHHHHH-HhCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEEcCHHHHHHHHhhcccccccc
Confidence 479999999999999998 66789999999999999999998542 234689999998775321
Q ss_pred -----CCccchhhhhhH
Q 024811 228 -----TGRYDVIWVQWC 239 (262)
Q Consensus 228 -----~~~yDlI~s~~v 239 (262)
...||+||.-.+
T Consensus 272 ~~~~~~~~~d~v~lDPP 288 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPP 288 (353)
T ss_pred ccccccCCCCEEEECCC
Confidence 013788887665
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.7e-07 Score=86.32 Aligned_cols=74 Identities=22% Similarity=0.185 Sum_probs=59.6
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-----------
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----------- 227 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~----------- 227 (262)
.+|||++||+|.++..|+ +.+.+|++||.|+.|++.|++++... ...+++|+++|+.++-..
T Consensus 208 ~~vLDl~~G~G~~sl~la-~~~~~v~~vE~~~~ai~~a~~N~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLALA-RNFRRVLATEISKPSVAAAQYNIAAN------GIDNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHHH-hhCCEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEECCHHHHHHHHhhcccccccc
Confidence 579999999999999998 66789999999999999999997542 234789999998774210
Q ss_pred -----CCccchhhhhhH
Q 024811 228 -----TGRYDVIWVQWC 239 (262)
Q Consensus 228 -----~~~yDlI~s~~v 239 (262)
..+||+|+.-.+
T Consensus 281 ~~~~~~~~~D~v~lDPP 297 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPP 297 (362)
T ss_pred cccccCCCCCEEEECCC
Confidence 125899998776
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.5e-07 Score=87.52 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=69.7
Q ss_pred CceeeEeeccccHHHHHHHHhcC------CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCcc
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~------~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~y 231 (262)
...|||+|||+|-++...+ +.+ .+|.+||-|+.++...++.+..- .-..+++++.+|++++..+ .++
T Consensus 187 ~~vVldVGAGrGpL~~~al-~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n-----~w~~~V~vi~~d~r~v~lp-ekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFAL-QAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN-----GWGDKVTVIHGDMREVELP-EKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHH-HTTHHHCCESEEEEEESSTHHHHHHHHHHHHT-----TTTTTEEEEES-TTTSCHS-S-E
T ss_pred ceEEEEeCCCccHHHHHHH-HHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc-----CCCCeEEEEeCcccCCCCC-Cce
Confidence 4579999999999998887 443 58999999999988877654321 1235799999999999875 599
Q ss_pred chhhhhhHHhhcCchh-HHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~e-l~~~l~~~~~~LkPG 262 (262)
|+|||=+. +.+-+.| ..+.|....+.|+||
T Consensus 260 DIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~ 290 (448)
T PF05185_consen 260 DIIVSELL-GSFGDNELSPECLDAADRFLKPD 290 (448)
T ss_dssp EEEEE----BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred eEEEEecc-CCccccccCHHHHHHHHhhcCCC
Confidence 99999864 5555544 346788888899885
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=79.90 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=77.3
Q ss_pred CceeeEeeccccH----HHHHHHHhcC------CcEEEEeCCHHHHHHHHhhccccc---------------c-------
Q 024811 158 HLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPEN---------------H------- 205 (262)
Q Consensus 158 ~~~VLDlGcGtG~----lt~~La~~~~------~~V~~VD~s~~mld~Ar~~l~~a~---------------~------- 205 (262)
..+|...||.||- ++..|. +.+ -+|.++|+|+.+|+.|++-+=... .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~-e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLA-DTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHH-HhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 4799999999996 344444 321 259999999999999987531100 0
Q ss_pred ---cCCCCCcceEEEEcCCCCCCC-CCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 206 ---MAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 206 ---~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.....-..++|...|+.+.++ ..+.||+|+|.+++.|++++...++++++.+.|+||
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg 255 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD 255 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence 001112468899999987532 247899999999999999988889999999999997
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-06 Score=74.15 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=78.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-----CC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-----~~ 227 (262)
..++..|||+|.|||-+|+.++.+.. ..++++|-|+++.....+... .++++++|..+.. ..
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----------~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----------GVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----------CccccccchhhHHHHHhhcC
Confidence 34577899999999999999995543 478999999999999998764 4568888888764 22
Q ss_pred CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 228 ~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
...||.|+|...+--++-..-.++++.+...|.+|
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~g 149 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAG 149 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCC
Confidence 35899999999888888777678888888888765
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-06 Score=79.53 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=64.0
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCC-ccch
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYDV 233 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~-~yDl 233 (262)
..++..|||||+|+|.+|..|+ +.+..|++||.++.++...++.... ..+++++.+|+..++++.- .++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll-~~~~~v~aiEiD~~l~~~L~~~~~~--------~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLL-ERAARVTAIEIDRRLAEVLKERFAP--------YDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHH-hhcCeEEEEEeCHHHHHHHHHhccc--------ccceEEEeCchhcCcchhhcCCCE
Confidence 3347899999999999999999 7788899999999999999998752 3589999999999877521 5788
Q ss_pred hhhhhH
Q 024811 234 IWVQWC 239 (262)
Q Consensus 234 I~s~~v 239 (262)
|++|..
T Consensus 99 vVaNlP 104 (259)
T COG0030 99 VVANLP 104 (259)
T ss_pred EEEcCC
Confidence 888864
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1e-06 Score=82.29 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=74.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++..|||+|||||.++..-++....+|.+||.|.-+ +.|++-+.. +.....++++.+.+++...+.++.|+|+|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~-----N~~~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKD-----NGLEDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHh-----cCccceEEEeecceEEEecCccceeEEee
Confidence 577999999999999999996666789999988766 888876642 12334689999999998655579999999
Q ss_pred hhHHhhcC-chhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLT-DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hlt-D~el~~~l~~~~~~LkPG 262 (262)
-|.=+.+- +--+..+|-.--+.|+||
T Consensus 134 EWMGy~Ll~EsMldsVl~ARdkwL~~~ 160 (346)
T KOG1499|consen 134 EWMGYFLLYESMLDSVLYARDKWLKEG 160 (346)
T ss_pred hhhhHHHHHhhhhhhhhhhhhhccCCC
Confidence 98533332 223336666666777775
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-06 Score=79.84 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=74.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
.+.+||.||+|.|.++..+++.. ..+|++||+++++++.|++.+...... -..++++++..|...+-. ..++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--FCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--ccCCceEEEEChhHHHHhhCCCCccEE
Confidence 45689999999999999999433 468999999999999999987532110 124678999999887632 23689999
Q ss_pred hhhhH-------HhhcCchhHHHHHH-HHHhhccCC
Q 024811 235 WVQWC-------IGHLTDDDFVSFFK-RAKVNHSQT 262 (262)
Q Consensus 235 ~s~~v-------l~hltD~el~~~l~-~~~~~LkPG 262 (262)
++-.. ..++-.. +|++ .|++.|+||
T Consensus 181 i~D~~dp~~~~~~~~Lyt~---eF~~~~~~~~L~p~ 213 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYTK---SFYERIVKPKLNPG 213 (336)
T ss_pred EecCCCccccCcchhhccH---HHHHHHHHHhcCCC
Confidence 98631 1222222 5888 899999996
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.1e-06 Score=77.24 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=79.4
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCcc
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~y 231 (262)
++.++.+|||.|.|+|.+|..|+...+ .+|+.+|.-+.+.+.|++|+..+. ...++.+..+|+.+...+ ..|
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-----l~d~v~~~~~Dv~~~~~~-~~v 164 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-----LGDRVTLKLGDVREGIDE-EDV 164 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-----cccceEEEeccccccccc-ccc
Confidence 466899999999999999999994334 379999999999999999997651 233488889999887665 489
Q ss_pred chhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|+. -++||- .++.++..+|+||
T Consensus 165 Dav~L-----Dmp~PW--~~le~~~~~Lkpg 188 (256)
T COG2519 165 DAVFL-----DLPDPW--NVLEHVSDALKPG 188 (256)
T ss_pred CEEEE-----cCCChH--HHHHHHHHHhCCC
Confidence 99764 567888 8999999999997
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.8e-06 Score=79.07 Aligned_cols=96 Identities=13% Similarity=0.040 Sum_probs=73.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC------CC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------ET 228 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~------~~ 228 (262)
+..+|||+|+|+|..|..++... ...|+.+|.++++.+.|+++++.+. ...+++++.+|..+.-+ ..
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-----l~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-----VSHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEEcCHHHHHHHHHhcccC
Confidence 46799999999999999999432 2368999999999999999997652 22478999999866421 12
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++||+|+.-.. ......++..+.+.|+||
T Consensus 193 ~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 193 SSYDFAFVDAD-----KRMYQDYFELLLQLVRVG 221 (278)
T ss_pred CCCCEEEECCC-----HHHHHHHHHHHHHhcCCC
Confidence 58999887532 234457888888999987
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-06 Score=77.98 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=72.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhhccccccc-CCCC------------------------
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHM-APDM------------------------ 210 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~l~~a~~~-~~~~------------------------ 210 (262)
.+..+|||||-.|.+|..+++..++ .|.++|+++..|..|++++.....+ ....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 3668999999999999999955443 5899999999999999988532111 0000
Q ss_pred -----------CcceEEEEcCCCCCCCCCCccchhhhhhHH--hhcC--chhHHHHHHHHHhhccCC
Q 024811 211 -----------HKATNFFCVPLQDFTPETGRYDVIWVQWCI--GHLT--DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 211 -----------~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl--~hlt--D~el~~~l~~~~~~LkPG 262 (262)
..+..+...|+.++. ...||+|.|-.+. -||. |+.+..||+++.++|.||
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~--~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pg 202 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMI--QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPG 202 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhc--cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcC
Confidence 011112223344332 3589999987652 4554 678999999999999997
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.4e-07 Score=78.14 Aligned_cols=96 Identities=14% Similarity=0.205 Sum_probs=71.4
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----C--C
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----E--T 228 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~--~ 228 (262)
+..+|||||+++|..|..++... ..+|+.+|.++++.+.|++++..+. ...+++++.+|..++-+ . .
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-----~~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-----LDDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-----GGGGEEEEES-HHHHHHHHHHTTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-----CCCcEEEEEeccHhhHHHHHhccCC
Confidence 46799999999999999999433 3489999999999999999997652 23579999999876421 1 2
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++||+|+.-.. ..+-..++..+.+.|+||
T Consensus 120 ~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 120 GQFDFVFIDAD-----KRNYLEYFEKALPLLRPG 148 (205)
T ss_dssp TSEEEEEEEST-----GGGHHHHHHHHHHHEEEE
T ss_pred CceeEEEEccc-----ccchhhHHHHHhhhccCC
Confidence 58999987531 223346777788888875
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-06 Score=82.14 Aligned_cols=84 Identities=12% Similarity=0.029 Sum_probs=58.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEE-cCCCCCC----CCCCc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFT----PETGR 230 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~-~d~~~~~----~~~~~ 230 (262)
...+|||||||+|-+...|+.+. .-+++++|+++.+++.|+++++.-. ....++.+.. .+..++. ...++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np----~l~~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP----GLNGAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc----CCcCcEEEEEccchhhhhhcccccCCc
Confidence 46799999999998888887443 4579999999999999999986420 1123566643 3332221 12368
Q ss_pred cchhhhhhHHhhcC
Q 024811 231 YDVIWVQWCIGHLT 244 (262)
Q Consensus 231 yDlI~s~~vl~hlt 244 (262)
||+|+||..++--.
T Consensus 190 fDlivcNPPf~~s~ 203 (321)
T PRK11727 190 FDATLCNPPFHASA 203 (321)
T ss_pred eEEEEeCCCCcCcc
Confidence 99999999865433
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-06 Score=75.81 Aligned_cols=80 Identities=18% Similarity=0.005 Sum_probs=60.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC---CCC-ccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETG-RYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~---~~~-~yD 232 (262)
.+.+|||++||+|.++..++.+....|++||.++.+++.++++++... ...+++++++|+.++-. ... .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~-----~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK-----SGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CcccEEEEehhHHHHHHHhhccCCCce
Confidence 367899999999999999995545589999999999999999986431 11357899999965411 112 478
Q ss_pred hhhhhhHHh
Q 024811 233 VIWVQWCIG 241 (262)
Q Consensus 233 lI~s~~vl~ 241 (262)
+|+.-..+.
T Consensus 124 vv~~DPPy~ 132 (189)
T TIGR00095 124 VIYLDPPFF 132 (189)
T ss_pred EEEECcCCC
Confidence 888776654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.9e-06 Score=77.08 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=65.2
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
+.++++.|||||.|||++|..|+ +.+.+|.++|.++.|+....++.+.- ......+++.+|+...+.+ .||.
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lL-e~~kkVvA~E~Dprmvael~krv~gt-----p~~~kLqV~~gD~lK~d~P--~fd~ 126 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLL-EAGKKVVAVEIDPRMVAELEKRVQGT-----PKSGKLQVLHGDFLKTDLP--RFDG 126 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHH-HhcCeEEEEecCcHHHHHHHHHhcCC-----CccceeeEEecccccCCCc--ccce
Confidence 46678999999999999999999 88999999999999999999987642 2235688999999887643 6999
Q ss_pred hhhhhH
Q 024811 234 IWVQWC 239 (262)
Q Consensus 234 I~s~~v 239 (262)
+|+|..
T Consensus 127 cVsNlP 132 (315)
T KOG0820|consen 127 CVSNLP 132 (315)
T ss_pred eeccCC
Confidence 998643
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.2e-07 Score=75.11 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=68.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+.+++|+|||.|.++....-.....|.++|++|+.++++..|..+. .-++++.++|+.+..+..+.||.++.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf-------EvqidlLqcdildle~~~g~fDtavi 120 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF-------EVQIDLLQCDILDLELKGGIFDTAVI 120 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh-------hhhhheeeeeccchhccCCeEeeEEe
Confidence 46789999999999996666223457999999999999999998654 23578999999998887789999999
Q ss_pred hhHHhhc---CchhHHH
Q 024811 237 QWCIGHL---TDDDFVS 250 (262)
Q Consensus 237 ~~vl~hl---tD~el~~ 250 (262)
+..++-= .|-++++
T Consensus 121 NppFGTk~~~aDm~fv~ 137 (185)
T KOG3420|consen 121 NPPFGTKKKGADMEFVS 137 (185)
T ss_pred cCCCCcccccccHHHHH
Confidence 9876432 4444443
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.5e-06 Score=72.14 Aligned_cols=97 Identities=11% Similarity=0.084 Sum_probs=67.5
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEE--EEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CC------CCC
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVD--LLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TP------ETG 229 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~--~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~------~~~ 229 (262)
+|||||||||.-+.+++ +.+++++ -.|+++..+...+..+..+... .. ..-+..|+.+- +- ..+
T Consensus 28 ~vLEiaSGtGqHa~~FA-~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~--Nv---~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFA-QALPHLTWQPSDPDDNLRPSIRAWIAEAGLP--NV---RPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred eEEEEcCCccHHHHHHH-HHCCCCEEcCCCCChHHHhhHHHHHHhcCCc--cc---CCCeEeecCCCCCccccccccCCC
Confidence 59999999999999999 6677654 4488888776555554432110 01 11122333221 11 235
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+||+|+|.+++|-++-.....+|+.+.++|+||
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~g 134 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKPG 134 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 899999999998888888778999999999996
|
The function of this family is unknown. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.5e-06 Score=74.62 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=79.7
Q ss_pred hhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcc
Q 024811 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (262)
Q Consensus 136 ~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~ 213 (262)
...-.||..++. .....+|||||.++|..+..++.... .+++.+|.++++.+.|++++..+.- ...
T Consensus 45 ~e~g~~L~~L~~-------~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----~~~ 112 (219)
T COG4122 45 PETGALLRLLAR-------LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----DDR 112 (219)
T ss_pred hhHHHHHHHHHH-------hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----cce
Confidence 345567777765 23578999999999999999994443 2688999999999999999987632 234
Q ss_pred eEEEE-cCCCCCCC--CCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 214 TNFFC-VPLQDFTP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 214 v~f~~-~d~~~~~~--~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++. +|..+.-. ..++||+|+.-.. ...-..+|..+.++|+||
T Consensus 113 i~~~~~gdal~~l~~~~~~~fDliFIDad-----K~~yp~~le~~~~lLr~G 159 (219)
T COG4122 113 IELLLGGDALDVLSRLLDGSFDLVFIDAD-----KADYPEYLERALPLLRPG 159 (219)
T ss_pred EEEEecCcHHHHHHhccCCCccEEEEeCC-----hhhCHHHHHHHHHHhCCC
Confidence 67777 46654321 2479999986521 122337899999999997
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.4e-07 Score=77.90 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=69.8
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
+.++||+|+|-|-+|..++ ..|.+|.+.|+|..|++..+.+- ... ....++...+-+||+|.|.
T Consensus 113 ~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~----------ynV-----l~~~ew~~t~~k~dli~cl 176 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKN----------YNV-----LTEIEWLQTDVKLDLILCL 176 (288)
T ss_pred CeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcC----------Cce-----eeehhhhhcCceeehHHHH
Confidence 5799999999999999999 88999999999999999887751 111 2223333333589999999
Q ss_pred hHHhhcCchhHHHHHHHHHhhccC
Q 024811 238 WCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 238 ~vl~hltD~el~~~l~~~~~~LkP 261 (262)
+.+..--++- .+|+.+..+|.|
T Consensus 177 NlLDRc~~p~--kLL~Di~~vl~p 198 (288)
T KOG3987|consen 177 NLLDRCFDPF--KLLEDIHLVLAP 198 (288)
T ss_pred HHHHhhcChH--HHHHHHHHHhcc
Confidence 9998888887 899999999887
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.15 E-value=6e-06 Score=74.58 Aligned_cols=88 Identities=13% Similarity=0.138 Sum_probs=67.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC---Cccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~---~~yD 232 (262)
.++..|||+|+|+|.+|..|+ +.+.+|.+||.++.+.+..++++.. ..++.++.+|+.++.... ....
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~-~~~~~v~~vE~d~~~~~~L~~~~~~--------~~~~~vi~~D~l~~~~~~~~~~~~~ 99 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELL-KRGKRVIAVEIDPDLAKHLKERFAS--------NPNVEVINGDFLKWDLYDLLKNQPL 99 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHH-HHSSEEEEEESSHHHHHHHHHHCTT--------CSSEEEEES-TTTSCGGGHCSSSEE
T ss_pred CCCCEEEEeCCCCccchhhHh-cccCcceeecCcHhHHHHHHHHhhh--------cccceeeecchhccccHHhhcCCce
Confidence 357899999999999999999 6569999999999999999998752 358999999999986542 3556
Q ss_pred hhhhhhHHhhcCchhHHHHHH
Q 024811 233 VIWVQWCIGHLTDDDFVSFFK 253 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~ 253 (262)
.|++|... +++.+=+.+++.
T Consensus 100 ~vv~NlPy-~is~~il~~ll~ 119 (262)
T PF00398_consen 100 LVVGNLPY-NISSPILRKLLE 119 (262)
T ss_dssp EEEEEETG-TGHHHHHHHHHH
T ss_pred EEEEEecc-cchHHHHHHHhh
Confidence 77887664 555443334443
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.2e-06 Score=73.45 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=69.9
Q ss_pred eeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC---CCCCccchhh
Q 024811 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVIW 235 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~---~~~~~yDlI~ 235 (262)
.+||||||.|.....++... -..+.+||++...+..|.+++... ...|+.++++|+..+- +++++.|-|+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~------~l~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR------GLKNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH------TTSSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh------cccceEEEEccHHHHHhhcccCCchheEE
Confidence 79999999999999999553 346899999999999999887654 4579999999998731 2347899999
Q ss_pred hhhHHhhcCchh------HHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDD------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~e------l~~~l~~~~~~LkPG 262 (262)
.+++=-|..... -..|+..+.+.|+||
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~g 126 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPG 126 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCC
Confidence 988632222110 115999999999986
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.2e-06 Score=73.41 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=68.7
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhccccccc---CCCCCcce
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHM---APDMHKAT 214 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~---~~~~~~~v 214 (262)
-.++..++.. + ++.+....+|+|||.|++....+... +..+.|||..+...+.|+......+.. .......+
T Consensus 28 ~~~~~~il~~-~---~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 28 PEFVSKILDE-L---NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHH-T---T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred HHHHHHHHHH-h---CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3455566542 2 35568899999999999988777444 556999999999999998765432211 11123467
Q ss_pred EEEEcCCCCCCCCC---CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 215 NFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 215 ~f~~~d~~~~~~~~---~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.+..+|+.+.+... ..-|+|++++.+ =++++...|.+....||||
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~---F~~~l~~~L~~~~~~lk~G 151 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTC---FDPDLNLALAELLLELKPG 151 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TT---T-HHHHHHHHHHHTTS-TT
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccc---cCHHHHHHHHHHHhcCCCC
Confidence 88888887642110 246888887642 1566667778888888887
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.12 E-value=5e-06 Score=75.87 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=64.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~---~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.+.+|||+|||+|..+-.+. +. ..++++||.|+.|++.++.-+...... ...........+..+ ..+.|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~-~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~-~~~~DL 105 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAR-EVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN-----RNAEWRRVLYRDFLP-FPPDDL 105 (274)
T ss_pred CCceEEEecCChHHHHHHHH-HHhcCceeeeeecCCHHHHHHHHHHHhccccc-----ccchhhhhhhccccc-CCCCcE
Confidence 46689999999998665544 43 457899999999999999876532111 111111111111111 134599
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhcc
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHS 260 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~Lk 260 (262)
|+++++|..+++.+...+++++.+.+.
T Consensus 106 vi~s~~L~EL~~~~r~~lv~~LW~~~~ 132 (274)
T PF09243_consen 106 VIASYVLNELPSAARAELVRSLWNKTA 132 (274)
T ss_pred EEEehhhhcCCchHHHHHHHHHHHhcc
Confidence 999999999999766678888866554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.1e-06 Score=74.68 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=63.8
Q ss_pred HHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 138 s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
++.++...+.. +++.....+..+||+|||+|-++..++.... ..|++||.|+.++..|.+|+....- ...+..
T Consensus 130 TEE~V~~Vid~-~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-----~g~i~v 203 (328)
T KOG2904|consen 130 TEEWVEAVIDA-LNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-----SGRIEV 203 (328)
T ss_pred HHHHHHHHHHH-HhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-----cCceEE
Confidence 45555555442 2211222456899999999999999994432 4689999999999999999875422 234455
Q ss_pred EEcCCCCC----C-CCCCccchhhhhhH
Q 024811 217 FCVPLQDF----T-PETGRYDVIWVQWC 239 (262)
Q Consensus 217 ~~~d~~~~----~-~~~~~yDlI~s~~v 239 (262)
+.-+++.- . ...+++|+++||..
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPP 231 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPP 231 (328)
T ss_pred EecccccccccccccccCceeEEecCCC
Confidence 54434321 1 12379999999975
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.5e-06 Score=75.82 Aligned_cols=99 Identities=17% Similarity=0.152 Sum_probs=73.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+..|||+|||.|.++...+.....+|.+||.|+ |.+.|++.++. +....++..+.+.+++...+ ++.|+|||
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~-----N~~~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVAS-----NNLADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhc-----CCccceEEEccCccccccCc-hhccEEEe
Confidence 3568999999999999988855567999999875 88999987753 22345789999999999875 69999998
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
-..=..+-++...+-.-.+++.|+|.
T Consensus 250 EPMG~mL~NERMLEsYl~Ark~l~P~ 275 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYLHARKWLKPN 275 (517)
T ss_pred ccchhhhhhHHHHHHHHHHHhhcCCC
Confidence 75433334443333333466888883
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.2e-06 Score=77.28 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=65.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CC--Cc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ET--GR 230 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~--~~ 230 (262)
++..+||++||.|..|..++.... ..|.++|.++.|++.|++++.. ..++.+++.++.++.. .. .+
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i~~~f~~l~~~l~~~~~~ 90 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLVHGNFSNLKEVLAEGLGK 90 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEEeCCHHHHHHHHHcCCCc
Confidence 567999999999999999995432 4799999999999999998743 2378999999987632 11 27
Q ss_pred cchhhhhh--HHhhcCchh
Q 024811 231 YDVIWVQW--CIGHLTDDD 247 (262)
Q Consensus 231 yDlI~s~~--vl~hltD~e 247 (262)
+|.|++.. +.+++.+++
T Consensus 91 vDgIl~DLGvSs~Qld~~~ 109 (296)
T PRK00050 91 VDGILLDLGVSSPQLDDAE 109 (296)
T ss_pred cCEEEECCCccccccCCCc
Confidence 99998864 457777766
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.7e-05 Score=58.77 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=61.4
Q ss_pred eeEeeccccHHHHHHHHhcC---CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC--CCCCC-Cccchh
Q 024811 161 ALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPET-GRYDVI 234 (262)
Q Consensus 161 VLDlGcGtG~lt~~La~~~~---~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~--~~~~~-~~yDlI 234 (262)
++|+|||+|..+ .+. ... ..+.++|+++.+++.++..... .. ...+.+...+... ++... ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLA-RLGGRGAYVVGVDLSPEMLALARARAEG-AG-----LGLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHH-HhCCCCceEEEEeCCHHHHHHHHhhhhh-cC-----CCceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999977 333 332 2688899999999996554321 10 0115777777765 44443 379999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++...+++.. ....+..+.+.|+|+
T Consensus 124 ~~~~~~~~~~---~~~~~~~~~~~l~~~ 148 (257)
T COG0500 124 ISLLVLHLLP---PAKALRELLRVLKPG 148 (257)
T ss_pred eeeeehhcCC---HHHHHHHHHHhcCCC
Confidence 4344444555 448999999999874
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=72.73 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=77.9
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
-.||..++.. .+..+|||||+++|.-|..++... ..+|+.+|.+++..+.|++++..+. ...++++
T Consensus 68 g~lL~~l~~~-------~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-----~~~~I~~ 135 (247)
T PLN02589 68 GQFLNMLLKL-------INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-----VAHKIDF 135 (247)
T ss_pred HHHHHHHHHH-------hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCceEE
Confidence 3566655541 246799999999999999999433 2479999999999999999997652 2357899
Q ss_pred EEcCCCCCCCC-------CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 217 FCVPLQDFTPE-------TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 217 ~~~d~~~~~~~-------~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++..+.-+. .++||+|+.-.- ...-..++..+.+.|+||
T Consensus 136 ~~G~a~e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~G 183 (247)
T PLN02589 136 REGPALPVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVG 183 (247)
T ss_pred EeccHHHHHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCC
Confidence 99988765221 258999987532 112336777888899887
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.03 E-value=5e-05 Score=70.93 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=74.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc-----CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE--EEcCCCCC---CC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF--FCVPLQDF---TP 226 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-----~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f--~~~d~~~~---~~ 226 (262)
++..++|+|||.|+=+..|+... ...+..||+|..+++.+.+++... ..+.+.+ +++|..+. .+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~------~~p~l~v~~l~gdy~~~l~~l~ 149 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG------NFSHVRCAGLLGTYDDGLAWLK 149 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc------cCCCeEEEEEEecHHHHHhhcc
Confidence 46689999999999999888443 135889999999999999998621 2344555 67777552 11
Q ss_pred C---CCccchhhhh-hHHhhcCchhHHHHHHHHHh-hccCC
Q 024811 227 E---TGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKV-NHSQT 262 (262)
Q Consensus 227 ~---~~~yDlI~s~-~vl~hltD~el~~~l~~~~~-~LkPG 262 (262)
. .....+|+.- .+++++++++...||+++++ .|+||
T Consensus 150 ~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~ 190 (319)
T TIGR03439 150 RPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS 190 (319)
T ss_pred cccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence 1 1235666554 58999999999999999999 99886
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.5e-06 Score=71.48 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=54.0
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC--C-ccchhhh
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--G-RYDVIWV 236 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~--~-~yDlI~s 236 (262)
.|+|+-||.|..+..++ +.+.+|.+||.++..++.|+.|+.... ...++.|+++|+.++...- . .||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA-~~~~~Viaidid~~~~~~a~hNa~vYG-----v~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFA-RTFDRVIAIDIDPERLECAKHNAEVYG-----VADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHH-HTT-EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHH-HhCCeEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 59999999999999999 779999999999999999999987541 2358999999998764321 1 2899998
Q ss_pred hhH
Q 024811 237 QWC 239 (262)
Q Consensus 237 ~~v 239 (262)
+.+
T Consensus 76 SPP 78 (163)
T PF09445_consen 76 SPP 78 (163)
T ss_dssp ---
T ss_pred CCC
Confidence 753
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.8e-05 Score=71.87 Aligned_cols=94 Identities=16% Similarity=0.104 Sum_probs=70.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
+.+.+||=||.|-|...++++ ++-.+|++||+++++++.+++.+...... -..++++++.. +.+- ..++||+|+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvL-kh~~~v~mVeID~~Vv~~~k~~lP~~~~~--~~DpRv~l~~~-~~~~--~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLF-KYDTHVDFVQADEKILDSFISFFPHFHEV--KNNKNFTHAKQ-LLDL--DIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHH-CcCCeeEEEECCHHHHHHHHHHCHHHHHh--hcCCCEEEeeh-hhhc--cCCcCCEEE
Confidence 357899999999999999999 55569999999999999999977643221 13456676652 2211 126899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+-.. ++. .|++.|++.|+||
T Consensus 145 vDs~-----~~~--~fy~~~~~~L~~~ 164 (262)
T PRK00536 145 CLQE-----PDI--HKIDGLKRMLKED 164 (262)
T ss_pred EcCC-----CCh--HHHHHHHHhcCCC
Confidence 8742 334 7999999999996
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.7e-06 Score=77.71 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=67.4
Q ss_pred CceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+.+|||++||+|.++..++.... ..|+++|.++.+++.+++|+..- ...++.+++.|+..+-....+||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N------~~~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN------GLENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCceEEEhhhHHHHHhhcCCCCEEEE
Confidence 35899999999999999985543 48999999999999999998542 123567899998765331357999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
... ..+. .++..+.+.++||
T Consensus 132 DP~----Gs~~--~~l~~al~~~~~~ 151 (382)
T PRK04338 132 DPF----GSPA--PFLDSAIRSVKRG 151 (382)
T ss_pred CCC----CCcH--HHHHHHHHHhcCC
Confidence 752 2222 5666655555553
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=67.93 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=69.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CC--------cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FN--------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~--------~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~ 225 (262)
.++..+||-=||+|.+..+.+... .. .+.++|.++.+++.|++|+..+. ....+.+.+.|+.+++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-----~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-----VEDYIDFIQWDARELP 101 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGGGG
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-----cCCceEEEecchhhcc
Confidence 457799999999999998876222 12 26799999999999999997652 2346889999999997
Q ss_pred CCCCccchhhhhhHHhhc-Cch-hH----HHHHHHHHhhccC
Q 024811 226 PETGRYDVIWVQWCIGHL-TDD-DF----VSFFKRAKVNHSQ 261 (262)
Q Consensus 226 ~~~~~yDlI~s~~vl~hl-tD~-el----~~~l~~~~~~LkP 261 (262)
..++.+|+|+++...+.- .+. +. .++++++.++|+|
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 445799999999886643 321 22 3467777777765
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.8e-05 Score=74.59 Aligned_cols=59 Identities=24% Similarity=0.209 Sum_probs=46.7
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
.+|||+=||+|++|..|+ ..+.+|.+||.++.+++.|++++..- ...++.|++++.+++
T Consensus 198 ~~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N------~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLN------GIDNVEFIRGDAEDF 256 (352)
T ss_dssp TEEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHT------T--SEEEEE--SHHC
T ss_pred CcEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHc------CCCcceEEEeeccch
Confidence 379999999999999999 88999999999999999999998642 356899998877654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.3e-05 Score=70.10 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=62.3
Q ss_pred CCceeeEeeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++..|||+-||+|.++..+++. ....|.++|.+|..++.+++++..- .....+..+++|..++.+ .+.||-|+
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN-----kv~~~i~~~~~D~~~~~~-~~~~drvi 174 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN-----KVENRIEVINGDAREFLP-EGKFDRVI 174 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT-----T-TTTEEEEES-GGG----TT-EEEEE
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc-----CCCCeEEEEcCCHHHhcC-ccccCEEE
Confidence 5789999999999999999942 4678999999999999999998642 223468899999999866 57999888
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
++.+ +.+ . .||..+..++++
T Consensus 175 m~lp--~~~--~--~fl~~~~~~~~~ 194 (200)
T PF02475_consen 175 MNLP--ESS--L--EFLDAALSLLKE 194 (200)
T ss_dssp E--T--SSG--G--GGHHHHHHHEEE
T ss_pred ECCh--HHH--H--HHHHHHHHHhcC
Confidence 8753 111 1 455556665554
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.9e-06 Score=74.70 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=59.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
....|.|+|||-+.++. .....|.-+|+.+ .+-+++.+||.+.+.++++.|++|+
T Consensus 180 ~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a---------------------~~~~V~~cDm~~vPl~d~svDvaV~ 234 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----SERHKVHSFDLVA---------------------VNERVIACDMRNVPLEDESVDVAVF 234 (325)
T ss_pred CceEEEecccchhhhhh----ccccceeeeeeec---------------------CCCceeeccccCCcCccCcccEEEe
Confidence 46789999999999876 3345666665411 1346788999999888899999998
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+|+- || +..|++++.|+|+||
T Consensus 235 CLSLMg-tn--~~df~kEa~RiLk~g 257 (325)
T KOG3045|consen 235 CLSLMG-TN--LADFIKEANRILKPG 257 (325)
T ss_pred eHhhhc-cc--HHHHHHHHHHHhccC
Confidence 877653 44 448999999999997
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.3e-05 Score=72.01 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=76.0
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~ 235 (262)
..+||=||.|.|..++.+++.. ..++++||++++.++.|++.+...... . ..++++++..|..+|-.. ..+||+|+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~-~-~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG-A-DDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc-c-CCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3599999999999999999443 478999999999999999999754211 1 157889999998887432 24799999
Q ss_pred hhhH--HhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWC--IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~v--l~hltD~el~~~l~~~~~~LkPG 262 (262)
+-.. ...-+.--=..|++.|+++|+|+
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~ 183 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKED 183 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCC
Confidence 7642 11111100126999999999985
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.2e-05 Score=69.19 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=81.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcC---CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC---CCCc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGR 230 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~---~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~---~~~~ 230 (262)
.+-+||||.||.||.-...+.... .+|.+.|-|+.-++..++.++.. .....++|.++|..+... ..-.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~-----gL~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER-----GLEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc-----CCccceEEEecCCCCHhHhhccCCC
Confidence 467999999999999888885543 46899999999999999998652 122345999999887531 1236
Q ss_pred cchhhhhhHHhhcCchhHH-HHHHHHHhhccCC
Q 024811 231 YDVIWVQWCIGHLTDDDFV-SFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~vl~hltD~el~-~~l~~~~~~LkPG 262 (262)
+++++++..+..|+|.+++ ..|+-+.++|.||
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pg 242 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPG 242 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence 8999999999999998755 4899999999987
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3e-05 Score=68.19 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=61.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHhhccccccc----CCCCCcceEEEEcCCCCCCCCC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHM----APDMHKATNFFCVPLQDFTPET 228 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~---~~~V~~VD~s~~mld~Ar~~l~~a~~~----~~~~~~~v~f~~~d~~~~~~~~ 228 (262)
.++.+.||+|+|+|++|.-++.-. +..+.+||.-++.++.+++++...-.+ ..-......|+.+|-....++.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 368899999999999999887222 334589999999999999998643210 0001246788889988776767
Q ss_pred Cccchhhhh
Q 024811 229 GRYDVIWVQ 237 (262)
Q Consensus 229 ~~yDlI~s~ 237 (262)
.+||.|.+-
T Consensus 161 a~YDaIhvG 169 (237)
T KOG1661|consen 161 APYDAIHVG 169 (237)
T ss_pred CCcceEEEc
Confidence 899999887
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.5e-05 Score=63.23 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=68.4
Q ss_pred CCceeeEeeccccHHHHHHHH-----hcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCcc
Q 024811 157 QHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~-----~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~y 231 (262)
+...|+|+|||-|+++..|+. ....+|.+||.++..++.+.++....... ...+..+...++.+... ....
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~ 100 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD---LEKRLSFIQGDIADESS-SDPP 100 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch---hhccchhhccchhhhcc-cCCC
Confidence 577999999999999999995 44568999999999999999887654211 12456677776665533 3578
Q ss_pred chhhhhhHHhhcCchhHHHHHH
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFK 253 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~ 253 (262)
++++.-.+-+-+++.-+..|++
T Consensus 101 ~~~vgLHaCG~Ls~~~l~~~~~ 122 (141)
T PF13679_consen 101 DILVGLHACGDLSDRALRLFIR 122 (141)
T ss_pred eEEEEeecccchHHHHHHHHHH
Confidence 8888877777777765545544
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.3e-05 Score=69.88 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=73.9
Q ss_pred ceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC---CCCCCccch
Q 024811 159 LVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETGRYDV 233 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~---~~~~~~yDl 233 (262)
-.+||||||.|.....+| +..+ .+.+||+....+..|-+++... ..+|+.+++.|+.++ -+++++.|-
T Consensus 50 pi~lEIGfG~G~~l~~~A-~~nP~~nfiGiEi~~~~v~~~l~k~~~~------~l~Nlri~~~DA~~~l~~~~~~~sl~~ 122 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMA-KKNPEKNFLGIEIRVPGVAKALKKIKEL------GLKNLRLLCGDAVEVLDYLIPDGSLDK 122 (227)
T ss_pred cEEEEECCCCCHHHHHHH-HHCCCCCEEEEEEehHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHhcCCCCCeeE
Confidence 369999999999999999 5554 5789999999999999988653 233899999998764 234469999
Q ss_pred hhhhhHHh-----h----cCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIG-----H----LTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~-----h----ltD~el~~~l~~~~~~LkPG 262 (262)
|+.+++=- | ++.+ .|++.+.+.|+||
T Consensus 123 I~i~FPDPWpKkRH~KRRl~~~---~fl~~~a~~Lk~g 157 (227)
T COG0220 123 IYINFPDPWPKKRHHKRRLTQP---EFLKLYARKLKPG 157 (227)
T ss_pred EEEECCCCCCCccccccccCCH---HHHHHHHHHccCC
Confidence 99988632 2 3333 5999999999997
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.7e-05 Score=69.34 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=68.2
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC--CCCC-CC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPE-TG 229 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~--~~~~-~~ 229 (262)
+.++.+|||.|.|+|.+|..|+...+ .+|.-.|..+++.+.|++++.... ...++++.+.|+.+ |..+ ..
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-----l~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG-----LDDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-----CCTTEEEEES-GGCG--STT-TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-----CCCCceeEecceecccccccccC
Confidence 56799999999999999999994444 379999999999999999997642 23589999999854 3111 25
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhc-cCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNH-SQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~L-kPG 262 (262)
.+|+|+. =|++|- .++..+.++| +||
T Consensus 113 ~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~g 139 (247)
T PF08704_consen 113 DFDAVFL-----DLPDPW--EAIPHAKRALKKPG 139 (247)
T ss_dssp SEEEEEE-----ESSSGG--GGHHHHHHHE-EEE
T ss_pred cccEEEE-----eCCCHH--HHHHHHHHHHhcCC
Confidence 7898654 466776 7777788888 664
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.1e-05 Score=74.26 Aligned_cols=75 Identities=24% Similarity=0.236 Sum_probs=63.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC---Cccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~---~~yDl 233 (262)
++.++||+=||.|+++..|+ +.+.+|.+||.++.+++.|+++++.. ...|+.|+.++.+++.+.. ..+|+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n------~i~N~~f~~~~ae~~~~~~~~~~~~d~ 365 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAAN------GIDNVEFIAGDAEEFTPAWWEGYKPDV 365 (432)
T ss_pred CCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHc------CCCcEEEEeCCHHHHhhhccccCCCCE
Confidence 46799999999999999999 77899999999999999999998642 3457999999999986542 36788
Q ss_pred hhhhh
Q 024811 234 IWVQW 238 (262)
Q Consensus 234 I~s~~ 238 (262)
|+...
T Consensus 366 VvvDP 370 (432)
T COG2265 366 VVVDP 370 (432)
T ss_pred EEECC
Confidence 88754
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.5e-05 Score=71.59 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=71.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCC-ccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETG-RYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~-~yD 232 (262)
.+.+||=||.|.|..+..++ ++. .+|++||+++..++.|++.+...... ...++++++..|...|-. ... +||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell-~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELL-KHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHT-TSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CcCceEEEcCCChhhhhhhh-hcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCccc
Confidence 57899999999999999999 543 68999999999999999987542110 124688999999876621 224 899
Q ss_pred hhhhhhHHhhcCchh--HHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDD--FVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~e--l~~~l~~~~~~LkPG 262 (262)
+|++-..-..-+... -.+|++.|++.|+||
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~ 184 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD 184 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCC
Confidence 999743211111111 126999999999985
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.6e-05 Score=67.76 Aligned_cols=105 Identities=16% Similarity=0.222 Sum_probs=77.4
Q ss_pred CCceeeEeeccccH----HHHHHHHhcC-------CcEEEEeCCHHHHHHHHhhccc----------c-ccc----C---
Q 024811 157 QHLVALDCGSGIGR----ITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAP----------E-NHM----A--- 207 (262)
Q Consensus 157 ~~~~VLDlGcGtG~----lt~~La~~~~-------~~V~~VD~s~~mld~Ar~~l~~----------a-~~~----~--- 207 (262)
...+|.-.||+||- ++..|. +.+ -+|+++|+|..+|+.|+.-+=. . ..+ .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~-e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLL-EALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHH-HHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 36799999999995 444444 332 2689999999999999753211 0 000 0
Q ss_pred -----CCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 208 -----PDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 208 -----~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..-..+.|...|+.+-.+..+.||+|+|.+|+-|++.+...+++.++...|+||
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG 234 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence 1112467888888877653347899999999999999998889999999999997
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.2e-05 Score=64.35 Aligned_cols=94 Identities=15% Similarity=0.040 Sum_probs=76.0
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
.+.+.|+|+|+|-++.-.+ +...+|.+||.+|.-.++|++|+..- ...++..+.+|..+..+ ...|+|+|-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa-~~A~rViAiE~dPk~a~~a~eN~~v~------g~~n~evv~gDA~~y~f--e~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAA-HAAERVIAIEKDPKRARLAEENLHVP------GDVNWEVVVGDARDYDF--ENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHH-hhhceEEEEecCcHHHHHhhhcCCCC------CCcceEEEecccccccc--cccceeHHH
Confidence 4679999999999999888 77899999999999999999997431 34688999999999887 479999998
Q ss_pred hHHhhcCchhHHHHHHHHHhhcc
Q 024811 238 WCIGHLTDDDFVSFFKRAKVNHS 260 (262)
Q Consensus 238 ~vl~hltD~el~~~l~~~~~~Lk 260 (262)
..=.-|-+++.+.+++.+...|+
T Consensus 104 mlDTaLi~E~qVpV~n~vleFLr 126 (252)
T COG4076 104 MLDTALIEEKQVPVINAVLEFLR 126 (252)
T ss_pred HhhHHhhcccccHHHHHHHHHhh
Confidence 76555566666667776666554
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.5e-05 Score=60.01 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=36.4
Q ss_pred eeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcc
Q 024811 160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLA 201 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~ 201 (262)
.+||+|||+|..+..++ +.++ +|.++||++.+.+.+++++.
T Consensus 1 ~vlDiGa~~G~~~~~~~-~~~~~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA-RKGAEGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHH-HhCCCCEEEEEecCHHHHHHHHHHHH
Confidence 38999999999999999 5555 59999999999999999875
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.65 E-value=1.4e-05 Score=70.21 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=48.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+...|.|+|||-+.++..+- . ...|.-.|+.+. +-.+..+|+...+.++++.|++|+
T Consensus 72 ~~~viaD~GCGdA~la~~~~-~-~~~V~SfDLva~---------------------n~~Vtacdia~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVP-N-KHKVHSFDLVAP---------------------NPRVTACDIANVPLEDESVDVAVF 128 (219)
T ss_dssp TTS-EEEES-TT-HHHHH---S----EEEEESS-S---------------------STTEEES-TTS-S--TT-EEEEEE
T ss_pred CCEEEEECCCchHHHHHhcc-c-CceEEEeeccCC---------------------CCCEEEecCccCcCCCCceeEEEE
Confidence 45789999999999997765 2 235766665321 224667999998888899999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+|+-.. +..|++++.|+||||
T Consensus 129 cLSLMGTn---~~~fi~EA~RvLK~~ 151 (219)
T PF05148_consen 129 CLSLMGTN---WPDFIREANRVLKPG 151 (219)
T ss_dssp ES---SS----HHHHHHHHHHHEEEE
T ss_pred EhhhhCCC---cHHHHHHHHheeccC
Confidence 98876654 447999999999986
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00022 Score=61.60 Aligned_cols=90 Identities=19% Similarity=0.108 Sum_probs=62.5
Q ss_pred eeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhh
Q 024811 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~ 238 (262)
+++|+|+|-|--+.+|+.-. -.+++++|.+.+=+...+.-+... ...|+.+++..+++. ....+||+|+|.-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L------~L~nv~v~~~R~E~~-~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL------GLSNVEVINGRAEEP-EYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH------T-SSEEEEES-HHHT-TTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh------CCCCEEEEEeeeccc-ccCCCccEEEeeh
Confidence 79999999999999999443 236899999998777666654432 245899999999982 2347899999975
Q ss_pred HHhhcCchhHHHHHHHHHhhccCC
Q 024811 239 CIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 239 vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+ .+.. .++.-+...|+||
T Consensus 124 v----~~l~--~l~~~~~~~l~~~ 141 (184)
T PF02527_consen 124 V----APLD--KLLELARPLLKPG 141 (184)
T ss_dssp S----SSHH--HHHHHHGGGEEEE
T ss_pred h----cCHH--HHHHHHHHhcCCC
Confidence 3 2222 5666666666553
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00033 Score=68.66 Aligned_cols=101 Identities=10% Similarity=0.008 Sum_probs=73.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yD 232 (262)
.++.+|||++||+|.=|..|+.... ..|.++|+++.-++..++++... ...++.+.+.|...+.. ..+.||
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~------G~~nv~v~~~D~~~~~~~~~~~fD 185 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC------GVSNVALTHFDGRVFGAALPETFD 185 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCchhhhhhhchhhcC
Confidence 4678999999999999999995442 36899999999999999999764 33567788888776531 125799
Q ss_pred hhh----hhh--HHhh-------cCchhH-------HHHHHHHHhhccCC
Q 024811 233 VIW----VQW--CIGH-------LTDDDF-------VSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~----s~~--vl~h-------ltD~el-------~~~l~~~~~~LkPG 262 (262)
.|+ |+. ++.+ .+..++ .++|..+.++|+||
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpG 235 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPG 235 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999 542 1221 121111 46899999999997
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.60 E-value=3.5e-05 Score=66.35 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=64.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~~yD 232 (262)
.+.++||+=||+|.++...+.+...+|+.||.++..+...++|++.... ...+..++.|...+-. ...+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----CcceeeeccCHHHHHHhhcccCCCce
Confidence 4789999999999999999977778999999999999999999875421 1257888888654321 236899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHH--hhccC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAK--VNHSQ 261 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~--~~LkP 261 (262)
+|++-.+...-.. ..+++..+. .+|++
T Consensus 117 iIflDPPY~~~~~--~~~~l~~l~~~~~l~~ 145 (183)
T PF03602_consen 117 IIFLDPPYAKGLY--YEELLELLAENNLLNE 145 (183)
T ss_dssp EEEE--STTSCHH--HHHHHHHHHHTTSEEE
T ss_pred EEEECCCcccchH--HHHHHHHHHHCCCCCC
Confidence 9999876433221 124555444 44443
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00016 Score=74.05 Aligned_cols=99 Identities=11% Similarity=0.089 Sum_probs=71.1
Q ss_pred CCceeeEeeccccHHHHHHHHhc-------------------------------------------CCcEEEEeCCHHHH
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSHFL 193 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-------------------------------------------~~~V~~VD~s~~ml 193 (262)
++..++|-.||+|.+.+..+... ...+.++|.++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46789999999999998877310 11589999999999
Q ss_pred HHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC--CccchhhhhhHHhhc-Cc-hhHHHHHHHHHhhcc
Q 024811 194 DAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYDVIWVQWCIGHL-TD-DDFVSFFKRAKVNHS 260 (262)
Q Consensus 194 d~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~--~~yDlI~s~~vl~hl-tD-~el~~~l~~~~~~Lk 260 (262)
+.|++|+..+. ....+.|.++|+.++.+.. ++||+|++|.+...- .+ .++..+.+.+.+.|+
T Consensus 270 ~~A~~N~~~~g-----~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 270 QAARKNARRAG-----VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred HHHHHHHHHcC-----CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 99999987642 2235889999998875432 469999999875433 22 344555555544443
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00023 Score=68.17 Aligned_cols=101 Identities=14% Similarity=0.055 Sum_probs=76.6
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCCccch
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~~yDl 233 (262)
+.+|||+=|=||..|.+.+.....+|+.||.|...|+.|++|+..-. .......|+++|+.++-. ...+||+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg----~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNG----LDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcC----CCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 77999999999999999994444599999999999999999986421 123457899999988732 2248999
Q ss_pred hhhhhH-HhhcCc------hhHHHHHHHHHhhccCC
Q 024811 234 IWVQWC-IGHLTD------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~v-l~hltD------~el~~~l~~~~~~LkPG 262 (262)
|+.-.+ +..-.+ .+...++..+.++|+||
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg 329 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG 329 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCC
Confidence 998753 322222 24557888899999986
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00012 Score=64.57 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=58.8
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC---CCCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~---~~~~yDlI 234 (262)
..++|||||=.......-. ..+. |+.||+.+. .-.+...|+.+.+. +.++||+|
T Consensus 52 ~lrlLEVGals~~N~~s~~-~~fd-vt~IDLns~---------------------~~~I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTS-GWFD-VTRIDLNSQ---------------------HPGILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred cceEEeecccCCCCccccc-Ccee-eEEeecCCC---------------------CCCceeeccccCCCCCCcccceeEE
Confidence 4799999987554333322 3344 888887541 12355666666643 24799999
Q ss_pred hhhhHHhhcCchh-HHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~e-l~~~l~~~~~~LkPG 262 (262)
.++.||.+++++. -.++++++.+.|+|+
T Consensus 109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~ 137 (219)
T PF11968_consen 109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPP 137 (219)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999975 457999999999984
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00011 Score=69.78 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=81.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++..++|+|||.|..+..+..-...++++++.++--+..+......+. ....-++...|+..-+++++.||.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~-----l~~k~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY-----LDNKCNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH-----hhhhcceehhhhhcCCCCccccCcEE
Confidence 3466899999999999999995455788999988888777766543321 12234557788888778889999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..+..|.++.+ .+++++.++++||
T Consensus 184 ~ld~~~~~~~~~--~~y~Ei~rv~kpG 208 (364)
T KOG1269|consen 184 FLEVVCHAPDLE--KVYAEIYRVLKPG 208 (364)
T ss_pred EEeecccCCcHH--HHHHHHhcccCCC
Confidence 999999999998 9999999999997
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00015 Score=66.42 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=67.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcce-EEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT-NFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v-~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.+..++|+|||-|-.+.. .....+.+.|.+...+..|+.. +. ....+|+...++...+||.++
T Consensus 45 ~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~-------------~~~~~~~ad~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS-------------GGDNVCRADALKLPFREESFDAAL 108 (293)
T ss_pred CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC-------------CCceeehhhhhcCCCCCCccccch
Confidence 367899999999975331 1112355666666666666553 22 466788888877778999999
Q ss_pred hhhHHhhcCchhHH-HHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFV-SFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~-~~l~~~~~~LkPG 262 (262)
+..++||+...... ++++++.+.|+||
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpg 136 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPG 136 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCC
Confidence 99999999887654 6999999999997
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00011 Score=71.74 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=64.6
Q ss_pred HHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEE-----eCCHHHHHHHHhhcccccccCCCCCc
Q 024811 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLL-----EPVSHFLDAARESLAPENHMAPDMHK 212 (262)
Q Consensus 138 s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~V-----D~s~~mld~Ar~~l~~a~~~~~~~~~ 212 (262)
...+|..+++.... ...-..+||+|||+|.++..|+ .+ +|+.+ |..+..++.|-++- .+
T Consensus 101 Yid~i~~~~~~~~~---~g~iR~~LDvGcG~aSF~a~l~-~r--~V~t~s~a~~d~~~~qvqfaleRG----------vp 164 (506)
T PF03141_consen 101 YIDQIAEMIPLIKW---GGGIRTALDVGCGVASFGAYLL-ER--NVTTMSFAPNDEHEAQVQFALERG----------VP 164 (506)
T ss_pred HHHHHHHHhhcccc---CCceEEEEeccceeehhHHHHh-hC--CceEEEcccccCCchhhhhhhhcC----------cc
Confidence 34456666652111 1123478999999999999999 43 24433 33333444444331 11
Q ss_pred ceEEEEcCCCCCCCCCCccchhhhhhHHhhcC-chhHHHHHHHHHhhccCC
Q 024811 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT-DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 213 ~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hlt-D~el~~~l~~~~~~LkPG 262 (262)
.-+-...-+.++++.+.||+|=|+-|+.... +.. -+|-++.|+|+||
T Consensus 165 -a~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g--~~l~evdRvLRpG 212 (506)
T PF03141_consen 165 -AMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDG--FLLFEVDRVLRPG 212 (506)
T ss_pred -hhhhhhccccccCCccchhhhhcccccccchhccc--ceeehhhhhhccC
Confidence 1111222356677778999999998765444 444 6889999999997
|
; GO: 0008168 methyltransferase activity |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0017 Score=57.43 Aligned_cols=74 Identities=26% Similarity=0.209 Sum_probs=55.0
Q ss_pred CceeeEeeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCc-cchhh
Q 024811 158 HLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR-YDVIW 235 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~-yDlI~ 235 (262)
+.+++|||+|.|--+.+|+.- .-.+|+++|...+=+.-.++-.... ...|+.++++.++++.... + ||+|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL------~L~nv~i~~~RaE~~~~~~-~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL------GLENVEIVHGRAEEFGQEK-KQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh------CCCCeEEehhhHhhccccc-ccCcEEE
Confidence 579999999999999998822 1236999999987555444433221 2458999999999997642 4 99998
Q ss_pred hhh
Q 024811 236 VQW 238 (262)
Q Consensus 236 s~~ 238 (262)
|.-
T Consensus 141 sRA 143 (215)
T COG0357 141 SRA 143 (215)
T ss_pred eeh
Confidence 864
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00051 Score=64.69 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=52.3
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.++||+||+||..|..|+ +.+..|++||..+ |-.. +. ..+++..+..|...+.|..+.+|.|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~-~rG~~V~AVD~g~-l~~~----L~--------~~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLV-RRGMFVTAVDNGP-MAQS----LM--------DTGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHH-HcCCEEEEEechh-cCHh----hh--------CCCCEEEEeccCcccCCCCCCCCEE
Confidence 3468899999999999999999 6677999999543 2221 11 1347888888887776645688998
Q ss_pred hhhhH
Q 024811 235 WVQWC 239 (262)
Q Consensus 235 ~s~~v 239 (262)
+|-.+
T Consensus 275 VcDmv 279 (357)
T PRK11760 275 VCDMV 279 (357)
T ss_pred EEecc
Confidence 88643
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00035 Score=69.04 Aligned_cols=98 Identities=12% Similarity=-0.042 Sum_probs=71.4
Q ss_pred CceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccch
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yDl 233 (262)
.-.+||||||.|..+..++ ...+ .+.+||.+...+..+-.++... ...|+.+++.|+..+. .++++.|.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A-~~~p~~~~iGiE~~~~~~~~~~~~~~~~------~l~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQA-KMNPDALFIGVEVYLNGVANVLKLAGEQ------NITNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CceEEEECCCchHHHHHHH-HhCCCCCEEEEEeeHHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHhcCcccccE
Confidence 4579999999999999999 4444 6899999999998887775432 3468888888774321 23468999
Q ss_pred hhhhhHHhhc-----Cc-hhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHL-----TD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hl-----tD-~el~~~l~~~~~~LkPG 262 (262)
|+.+++=-|. .. ---..|++.+.+.|+||
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~g 455 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDN 455 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCC
Confidence 9998863222 11 11125999999999997
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00021 Score=65.82 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=77.3
Q ss_pred cchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCc
Q 024811 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (262)
Q Consensus 133 ~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~ 212 (262)
.|....+.++.... .+.+|||+=|=||.++...+.....+|+.||.|..+++.+++|+..- . -...
T Consensus 109 lDqR~nR~~v~~~~----------~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lN-g---~~~~ 174 (286)
T PF10672_consen 109 LDQRENRKWVRKYA----------KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALN-G---LDLD 174 (286)
T ss_dssp GGGHHHHHHHHHHC----------TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHT-T----CCT
T ss_pred HHHHhhHHHHHHHc----------CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-C---CCcc
Confidence 35556666676653 36799999999999999988444468999999999999999997541 1 1124
Q ss_pred ceEEEEcCCCCCCC---CCCccchhhhhhH-Hhh--cC-chhHHHHHHHHHhhccCC
Q 024811 213 ATNFFCVPLQDFTP---ETGRYDVIWVQWC-IGH--LT-DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 213 ~v~f~~~d~~~~~~---~~~~yDlI~s~~v-l~h--lt-D~el~~~l~~~~~~LkPG 262 (262)
.++|+..|+.++-. ..++||+||+-.+ +.. +. ..+...++..+.++|+||
T Consensus 175 ~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~g 231 (286)
T PF10672_consen 175 RHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPG 231 (286)
T ss_dssp CEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEE
T ss_pred ceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 68999999877521 1368999998653 211 00 134556788888888875
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.001 Score=57.68 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=64.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CCC-CCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPE-TGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~~-~~~yDl 233 (262)
.+.++||+=+|+|.++.+.+.+....|++||.+...+.+.++|++..+ ...+..++..|...+ ... .++||+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~-----~~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALG-----LEGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-----CccceEEEeecHHHHHHhcCCCCcccE
Confidence 478999999999999999997778899999999999999999987642 124677888887754 122 235999
Q ss_pred hhhhhHHh
Q 024811 234 IWVQWCIG 241 (262)
Q Consensus 234 I~s~~vl~ 241 (262)
|+.-.+++
T Consensus 118 VflDPPy~ 125 (187)
T COG0742 118 VFLDPPYA 125 (187)
T ss_pred EEeCCCCc
Confidence 99988776
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00061 Score=62.54 Aligned_cols=112 Identities=15% Similarity=0.057 Sum_probs=68.5
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHh--------cCCcEEEEeCCHHHHHHHHhhcccccccCCCCC
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~--------~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~ 211 (262)
.++..++. ..++.+|+|-.||+|.+...+... ...++.++|.++.++..|+-++..... ..
T Consensus 36 ~l~~~~~~-------~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~----~~ 104 (311)
T PF02384_consen 36 DLMVKLLN-------PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI----DN 104 (311)
T ss_dssp HHHHHHHT-------T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH----HC
T ss_pred HHHHhhhh-------ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc----cc
Confidence 45556553 235678999999999998888742 245789999999999999877643210 11
Q ss_pred cceEEEEcCCCCCCCC--CCccchhhhhhHHhhc--Cchh----------------H-HHHHHHHHhhccCC
Q 024811 212 KATNFFCVPLQDFTPE--TGRYDVIWVQWCIGHL--TDDD----------------F-VSFFKRAKVNHSQT 262 (262)
Q Consensus 212 ~~v~f~~~d~~~~~~~--~~~yDlI~s~~vl~hl--tD~e----------------l-~~~l~~~~~~LkPG 262 (262)
....+.+.|....+.. ...||+|+++.++.-. .+.+ . ..|+..+...|++|
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~ 176 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPG 176 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccc
Confidence 2345778886554332 3689999999876544 1111 0 13778888888763
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00026 Score=63.44 Aligned_cols=102 Identities=13% Similarity=0.030 Sum_probs=75.8
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhhcccccccCC-CCCcceEEEEcCCCCCC--CCCCc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAP-DMHKATNFFCVPLQDFT--PETGR 230 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~l~~a~~~~~-~~~~~v~f~~~d~~~~~--~~~~~ 230 (262)
...+.+|||...|-|+.+...+ +.+. +|.-||-+|..++.|.-|= ++. -....+.++.+|..++- +++.+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~-~rGA~~VitvEkdp~VLeLa~lNP-----wSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEAL-ERGAIHVITVEKDPNVLELAKLNP-----WSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cccCCEeeeeccCccHHHHHHH-HcCCcEEEEEeeCCCeEEeeccCC-----CCccccccccEEecccHHHHHhcCCccc
Confidence 3458899999999999999999 5555 8999999999998887652 111 11236789999987762 34578
Q ss_pred cchhhhhhH-HhhcCchhHHHHHHHHHhhccCC
Q 024811 231 YDVIWVQWC-IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~v-l~hltD~el~~~l~~~~~~LkPG 262 (262)
||+|+--.. |.+.+.-=-.+|.+++.++|+||
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrg 238 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRG 238 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcC
Confidence 999998654 55555321127999999999997
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00061 Score=66.79 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=54.9
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
+++.+..+||+-||||.++..++ +.+..|.+||.|+..++-|+.+... .+..|.+|+++-.++.
T Consensus 380 ~l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~------NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 380 GLPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQI------NGISNATFIVGQAEDL 443 (534)
T ss_pred CCCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchh------cCccceeeeecchhhc
Confidence 34556789999999999999999 8889999999999999999998753 3567999999966664
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00064 Score=67.24 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=53.9
Q ss_pred CceeeEeeccccHHHHHHHHhcC---------CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC----
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---- 224 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~---------~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~---- 224 (262)
..+|||.|||+|.+...++.... .++.++|.++..+..++.++..... ..+++.+.|....
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------~~~~i~~~d~l~~~~~~ 105 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------LEINVINFNSLSYVLLN 105 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------CCceeeecccccccccc
Confidence 56899999999999999984431 3678999999999999998754310 1233343332221
Q ss_pred -CCCCCccchhhhhhHHh
Q 024811 225 -TPETGRYDVIWVQWCIG 241 (262)
Q Consensus 225 -~~~~~~yDlI~s~~vl~ 241 (262)
....+.||+|++|.+..
T Consensus 106 ~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 106 IESYLDLFDIVITNPPYG 123 (524)
T ss_pred cccccCcccEEEeCCCcc
Confidence 11125899999998654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00055 Score=65.29 Aligned_cols=91 Identities=10% Similarity=0.001 Sum_probs=67.2
Q ss_pred ceeeEeeccccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchhh
Q 024811 159 LVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~--~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~ 235 (262)
.+|||+-||+|..+..++.+ ....|.++|.++..++.+++|+..- ...++.+++.|...+-.. ..+||+|.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N------~~~~~~v~~~Da~~~l~~~~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN------SVENIEVPNEDAANVLRYRNRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEchhHHHHHHHhCCCCCEEE
Confidence 58999999999999999965 3478999999999999999998542 123578888888776321 24799998
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
.-. + ..+ . .|+..+.+.+++
T Consensus 120 lDP-f-Gs~--~--~fld~al~~~~~ 139 (374)
T TIGR00308 120 IDP-F-GTP--A--PFVDSAIQASAE 139 (374)
T ss_pred eCC-C-CCc--H--HHHHHHHHhccc
Confidence 865 3 222 2 456666555554
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0014 Score=61.71 Aligned_cols=101 Identities=15% Similarity=0.005 Sum_probs=78.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEc-CCCCCCCCCCccch
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYDV 233 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~-d~~~~~~~~~~yDl 233 (262)
..++..|||==||||.+....- -.+.+|.+.|++..|++-|+.|+.... .....++.. |+...+....++|.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y~------i~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYYG------IEDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred cccCCEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhhC------cCceeEEEecccccCCCCCCccce
Confidence 4467899999999999999988 778899999999999999999997541 223444555 88888776557999
Q ss_pred hhhhhHHhhcC-------chhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLT-------DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hlt-------D~el~~~l~~~~~~LkPG 262 (262)
|++-...+--+ +.-..++|..+.++|++|
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~g 303 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPG 303 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcC
Confidence 99987544433 222457999999999985
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0013 Score=62.72 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=67.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC-----------------------------------------cEEEEeCCHHHHHH
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN-----------------------------------------EVDLLEPVSHFLDA 195 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~-----------------------------------------~V~~VD~s~~mld~ 195 (262)
+...++|==||+|.+.+..+ ..+. .+.++|.++.|++.
T Consensus 191 ~~~pl~DPmCGSGTi~IEAA-l~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAA-LIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCccccCCCCccHHHHHHH-HhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 34589999999999999988 4443 26699999999999
Q ss_pred HHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHH-hhcCch
Q 024811 196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCI-GHLTDD 246 (262)
Q Consensus 196 Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl-~hltD~ 246 (262)
|+.|+..|. ....+.|.++|+.++.++.+.||+||||.+- ..+.++
T Consensus 270 Ak~NA~~AG-----v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~ 316 (381)
T COG0116 270 AKANARAAG-----VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE 316 (381)
T ss_pred HHHHHHhcC-----CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh
Confidence 999987763 3457999999999997654689999999763 334444
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00045 Score=62.69 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=67.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccc--c-----------CCC----------CCcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH--M-----------APD----------MHKA 213 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~--~-----------~~~----------~~~~ 213 (262)
++.++||||||+--.-..-+.+.+.++++.|.++.-++..++=+..... + +.. ....
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 4679999999995554333345688999999999999866553332100 0 000 0012
Q ss_pred eEEEEcCCCCCCCCC------CccchhhhhhHHhhcCc--hhHHHHHHHHHhhccCC
Q 024811 214 TNFFCVPLQDFTPET------GRYDVIWVQWCIGHLTD--DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 214 v~f~~~d~~~~~~~~------~~yDlI~s~~vl~hltD--~el~~~l~~~~~~LkPG 262 (262)
-.++.+|+...+|-. .+||+|++.+++.-... ++...+++++.++||||
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpG 192 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPG 192 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEE
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 236678887654321 25999999999988863 46888999999999997
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0017 Score=61.17 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=63.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+.+|||.=||.|.+|.++++..-..|.++|++|..++.+++|+..- .....+..+++|..++.+..+.+|-|++
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN-----~v~~~v~~i~gD~rev~~~~~~aDrIim 262 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLN-----KVEGRVEPILGDAREVAPELGVADRIIM 262 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhc-----CccceeeEEeccHHHhhhccccCCEEEe
Confidence 48899999999999999999443444999999999999999998641 1223488999999998775468999998
Q ss_pred hhH
Q 024811 237 QWC 239 (262)
Q Consensus 237 ~~v 239 (262)
+.+
T Consensus 263 ~~p 265 (341)
T COG2520 263 GLP 265 (341)
T ss_pred CCC
Confidence 754
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0014 Score=59.87 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=74.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccc---cccc-------------------C----C--
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP---ENHM-------------------A----P-- 208 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~---a~~~-------------------~----~-- 208 (262)
...+||==|||.||++-.++ ..+-.|++.|.|--|+=.+.-.+.. .... . .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia-~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIA-KLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHh-hccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 45799999999999999999 5577899999999998776653321 0000 0 0
Q ss_pred ------CCCcceEEEEcCCCCCCCCC---CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 209 ------DMHKATNFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 209 ------~~~~~v~f~~~d~~~~~~~~---~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
....+.++..+|+.++-+++ +.||+|++.+.+--. +.+.++|..+.++||||
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPG 195 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccC
Confidence 11235666778887775544 699999988433322 34779999999999997
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0013 Score=58.39 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=57.7
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----CCCCccch
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~----~~~~~yDl 233 (262)
...|+|.-||.|..+..++ ..++.|..||.+|.-|..|+.|++... ...+++|+|+|+.+.. .....||+
T Consensus 95 ~~~iidaf~g~gGntiqfa-~~~~~VisIdiDPikIa~AkhNaeiYG-----I~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFA-LQGPYVIAIDIDPVKIACARHNAEVYG-----VPDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred cchhhhhhhcCCchHHHHH-HhCCeEEEEeccHHHHHHHhccceeec-----CCceeEEEechHHHHHHHHhhhhheeee
Confidence 4579999999999999999 668899999999999999999987542 2348999999997742 22234556
Q ss_pred hhhh
Q 024811 234 IWVQ 237 (262)
Q Consensus 234 I~s~ 237 (262)
|..+
T Consensus 169 vf~s 172 (263)
T KOG2730|consen 169 VFLS 172 (263)
T ss_pred eecC
Confidence 6544
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0028 Score=60.15 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=73.6
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhccccccc-CCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~-~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
-.+||=+|.|-|--.++|++.- +.+|+.||.+|+|++.++.+...-.-+ .+-..+++..+..|..+|-- ..+.||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 4689999999999999999443 679999999999999999554321111 12245788999999988832 23689999
Q ss_pred hhh------hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQ------WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~------~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|.- .++..+-.. +|..-+++.|+++
T Consensus 370 IVDl~DP~tps~~rlYS~---eFY~ll~~~l~e~ 400 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSV---EFYRLLSRHLAET 400 (508)
T ss_pred EEeCCCCCCcchhhhhhH---HHHHHHHHhcCcC
Confidence 864 345555544 4677777777763
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.002 Score=55.76 Aligned_cols=74 Identities=15% Similarity=0.018 Sum_probs=54.0
Q ss_pred CceeeEeeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~--V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
..-+||||||+|.++..|.+...++ +.++|++|.+++...+.+.. ...+++.++.|+.+--.+ ++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-------n~~~~~~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-------NRVHIDVVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-------cCCccceeehhHHhhhcc-CCccEEE
Confidence 5679999999999999999665544 56789999999988776532 122467778887664322 6777777
Q ss_pred hhhH
Q 024811 236 VQWC 239 (262)
Q Consensus 236 s~~v 239 (262)
.|..
T Consensus 116 fNPP 119 (209)
T KOG3191|consen 116 FNPP 119 (209)
T ss_pred ECCC
Confidence 7654
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0015 Score=58.94 Aligned_cols=82 Identities=18% Similarity=0.094 Sum_probs=61.1
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCC---CcceEEEEcCCCCCCC-CCCccchhh
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM---HKATNFFCVPLQDFTP-ETGRYDVIW 235 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~---~~~v~f~~~d~~~~~~-~~~~yDlI~ 235 (262)
+|||+=+|+|+.+..++ ..+.+|+++|-++......++++..+....... ..+++++.+|..++-. ....||+|+
T Consensus 91 ~VLD~TAGlG~Da~~la-s~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLA-SVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 89999999999999999 557679999999999999999887642211101 1468888888877632 124799999
Q ss_pred hhhHHhh
Q 024811 236 VQWCIGH 242 (262)
Q Consensus 236 s~~vl~h 242 (262)
.-..+.|
T Consensus 170 lDPMfp~ 176 (250)
T PRK10742 170 LDPMFPH 176 (250)
T ss_pred ECCCCCC
Confidence 7554433
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0071 Score=55.49 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=59.7
Q ss_pred CceeeEeeccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~---~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
+.+|+=||||+=-+|.-++.+. ...|+.+|.++..++.|++-+.... .....+.|+++|..+...+-..||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----GLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-------HH-SSEEEEES-GGGG-GG----SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc----cccCCeEEEecchhccccccccCCEE
Confidence 4699999999888887777433 3468999999999999998775211 12357899999998765444689999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.... --++.+++.++|.++.+.++||
T Consensus 197 ~lAal-Vg~~~e~K~~Il~~l~~~m~~g 223 (276)
T PF03059_consen 197 FLAAL-VGMDAEPKEEILEHLAKHMAPG 223 (276)
T ss_dssp EE-TT--S----SHHHHHHHHHHHS-TT
T ss_pred EEhhh-cccccchHHHHHHHHHhhCCCC
Confidence 87643 3344445569999999999987
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.019 Score=51.23 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=72.5
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHH--HhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEE
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL--IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La--~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~ 217 (262)
.|+..++... ...++||+|.=||.-+..++ .....+|..+|.++...+++.+..+.|. ....++|+
T Consensus 63 ~fl~~li~~~-------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag-----v~~KI~~i 130 (237)
T KOG1663|consen 63 QFLQMLIRLL-------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG-----VDHKITFI 130 (237)
T ss_pred HHHHHHHHHh-------CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc-----ccceeeee
Confidence 4666666522 46799999977776665555 2334579999999999999988876552 34578999
Q ss_pred EcCCCCCC------CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 218 CVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 218 ~~d~~~~~------~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++..+-- .+.++||+++.- |..+. -..++.++.++|++|
T Consensus 131 ~g~a~esLd~l~~~~~~~tfDfaFvD----adK~n-Y~~y~e~~l~Llr~G 176 (237)
T KOG1663|consen 131 EGPALESLDELLADGESGTFDFAFVD----ADKDN-YSNYYERLLRLLRVG 176 (237)
T ss_pred ecchhhhHHHHHhcCCCCceeEEEEc----cchHH-HHHHHHHHHhhcccc
Confidence 88876531 124789998753 22111 125777888888887
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.021 Score=55.94 Aligned_cols=96 Identities=13% Similarity=0.211 Sum_probs=75.9
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhH
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC 239 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~v 239 (262)
++|-+|||--.++..+.+..+..|+-+|.|+..++.....-.. ...-..+...|+....+++++||+|+--..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-------~~~~~~~~~~d~~~l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-------ERPEMQMVEMDMDQLVFEDESFDIVIDKGT 123 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-------CCcceEEEEecchhccCCCcceeEEEecCc
Confidence 8999999999999999977889999999999999988876432 224578888999888888889999999888
Q ss_pred HhhcCc-hh--H-----HHHHHHHHhhccCC
Q 024811 240 IGHLTD-DD--F-----VSFFKRAKVNHSQT 262 (262)
Q Consensus 240 l~hltD-~e--l-----~~~l~~~~~~LkPG 262 (262)
++++-. ++ + -..+..+.++|+||
T Consensus 124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~ 154 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPG 154 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhhHHHHhccC
Confidence 877743 22 1 12456677777765
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.01 Score=48.74 Aligned_cols=45 Identities=18% Similarity=0.037 Sum_probs=41.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~ 201 (262)
.+.+|+|||+++|..+..++.+....|.++|+++...+..++++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence 366899999999999999997777899999999999999999875
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0043 Score=52.47 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=35.2
Q ss_pred CCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 225 TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 225 ~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.+++++.|+|++..++.||+-+|...+++.|.+.||||
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~ 79 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPG 79 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcC
Confidence 45568999999999999999999999999999999997
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.023 Score=52.87 Aligned_cols=85 Identities=18% Similarity=0.215 Sum_probs=63.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-----CCC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----ETG 229 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-----~~~ 229 (262)
.+++.++|+=+|-|.-|..++... ..+|.++|.++.+++.|++.+... ..++.++++++.++.. ...
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-------~~R~~~i~~nF~~l~~~l~~~~~~ 91 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-------EGRVVLIHDNFANFFEHLDELLVT 91 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-------CCcEEEEeCCHHHHHHHHHhcCCC
Confidence 356789999999999999999543 257999999999999999987532 2367888887776521 124
Q ss_pred ccchhhhhh--HHhhcCchh
Q 024811 230 RYDVIWVQW--CIGHLTDDD 247 (262)
Q Consensus 230 ~yDlI~s~~--vl~hltD~e 247 (262)
++|.|+... +.+++.+++
T Consensus 92 ~vDgIl~DLGvSS~Qld~~~ 111 (305)
T TIGR00006 92 KIDGILVDLGVSSPQLDDPE 111 (305)
T ss_pred cccEEEEeccCCHhhcCCCC
Confidence 678877654 457777765
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.013 Score=51.35 Aligned_cols=91 Identities=19% Similarity=0.139 Sum_probs=65.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
-.+.+|||+|+|+|-.+..-++.....|...|..|-.++..+-|.+. ..-.+.|...|.-. ++ ..||+|+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~a-------ngv~i~~~~~d~~g-~~--~~~Dl~L 147 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAA-------NGVSILFTHADLIG-SP--PAFDLLL 147 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhh-------ccceeEEeeccccC-CC--cceeEEE
Confidence 35789999999999999998855567788889998888888877643 23467888888776 43 5799999
Q ss_pred hhhHHhhcCchh-HHHHHHHHH
Q 024811 236 VQWCIGHLTDDD-FVSFFKRAK 256 (262)
Q Consensus 236 s~~vl~hltD~e-l~~~l~~~~ 256 (262)
..-++.-=+-.+ +...+.+|.
T Consensus 148 agDlfy~~~~a~~l~~~~~~l~ 169 (218)
T COG3897 148 AGDLFYNHTEADRLIPWKDRLA 169 (218)
T ss_pred eeceecCchHHHHHHHHHHHHH
Confidence 987653333333 334444443
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.024 Score=49.84 Aligned_cols=91 Identities=11% Similarity=0.039 Sum_probs=60.6
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC------
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------ 226 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~--V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~------ 226 (262)
..++.+|+|+||-+|..++.+++....+ |.++|.-|- +...++.++++|+.+-+.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------------~~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------------KPIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------------ccCCCceEEeeeccCccHHHHHHH
Confidence 3457899999999999999999665554 788875331 123468899999876431
Q ss_pred --CCCccchhhhhh--------HHhhcCchhHH-HHHHHHHhhccCC
Q 024811 227 --ETGRYDVIWVQW--------CIGHLTDDDFV-SFFKRAKVNHSQT 262 (262)
Q Consensus 227 --~~~~yDlI~s~~--------vl~hltD~el~-~~l~~~~~~LkPG 262 (262)
...++|+|+|-. ...|.--..+. .++.-+...|+||
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~ 152 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPG 152 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCC
Confidence 123579999643 23444444444 3666667788775
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.022 Score=52.03 Aligned_cols=116 Identities=23% Similarity=0.254 Sum_probs=67.2
Q ss_pred hHHHHHHHHhhccCC-CccCCCCceeeEeecccc--HHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCC
Q 024811 137 GSEAFLQMLLSDRFP-NARNNQHLVALDCGSGIG--RITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (262)
Q Consensus 137 ~s~~fL~~ll~~~l~-~~~~~~~~~VLDlGcGtG--~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~ 211 (262)
..+.||..... ++. +.| -...||||||.= ..+-.++++.. .+|.-||..|-.+..++..+..- ..
T Consensus 51 ~nR~Fl~RaVr-~la~~~G---IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~------~~ 120 (267)
T PF04672_consen 51 ANRAFLRRAVR-YLAEEAG---IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN------PR 120 (267)
T ss_dssp HHHHHHHHHHH-HHHCTT------EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------TT
T ss_pred HHHHHHHHHHH-HHHHhcC---cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC------CC
Confidence 45677765543 211 111 346999999964 24556664443 46888999999999999988641 11
Q ss_pred cceEEEEcCCCCCC-----CC-CCccc-----hhhhhhHHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 212 KATNFFCVPLQDFT-----PE-TGRYD-----VIWVQWCIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 212 ~~v~f~~~d~~~~~-----~~-~~~yD-----lI~s~~vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
....++.+|+.+-. +. .+-+| .|+...+|||++| ++-..++..+...|.||
T Consensus 121 g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapG 183 (267)
T PF04672_consen 121 GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPG 183 (267)
T ss_dssp SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT
T ss_pred ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCC
Confidence 23789999998731 10 02233 4556678999998 56668999999999998
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.017 Score=51.86 Aligned_cols=73 Identities=23% Similarity=0.178 Sum_probs=50.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC--Cccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~--~~yDlI 234 (262)
++..+||+|+-||.+|.-++++....|.+||..-..+..-=++ ..+.+.+...++..+.++. +..|+|
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----------d~rV~~~E~tN~r~l~~~~~~~~~d~~ 148 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----------DPRVIVLERTNVRYLTPEDFTEKPDLI 148 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----------CCcEEEEecCChhhCCHHHcccCCCeE
Confidence 5779999999999999999965578999999877665543332 1234556666666665432 356777
Q ss_pred hhhhH
Q 024811 235 WVQWC 239 (262)
Q Consensus 235 ~s~~v 239 (262)
+|--+
T Consensus 149 v~DvS 153 (245)
T COG1189 149 VIDVS 153 (245)
T ss_pred EEEee
Confidence 76543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.05 Score=48.51 Aligned_cols=92 Identities=13% Similarity=-0.032 Sum_probs=57.0
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCC---cEEEEeCCHHH----HHHHHhhcccccccCCCCCcceEEEEcCCCCCC-
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHF----LDAARESLAPENHMAPDMHKATNFFCVPLQDFT- 225 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~---~V~~VD~s~~m----ld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~- 225 (262)
.+.++.+||-+|+.+|..-.+++ .... .|.+||.|+.. ++.|+++ +|+--+-.|.....
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvS-DIvg~~G~VYaVEfs~r~~rdL~~la~~R------------~NIiPIl~DAr~P~~ 136 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVS-DIVGPDGVVYAVEFSPRSMRDLLNLAKKR------------PNIIPILEDARHPEK 136 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHH-HHHTTTSEEEEEESSHHHHHHHHHHHHHS------------TTEEEEES-TTSGGG
T ss_pred CCCCCCEEEEecccCCCccchhh-hccCCCCcEEEEEecchhHHHHHHHhccC------------CceeeeeccCCChHH
Confidence 35578899999999999999998 6644 79999999954 5555554 26666677765321
Q ss_pred --CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 226 --PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 --~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.--+..|+|++--. +- .+..-++.++...||+|
T Consensus 137 Y~~lv~~VDvI~~DVa--Qp--~Qa~I~~~Na~~fLk~g 171 (229)
T PF01269_consen 137 YRMLVEMVDVIFQDVA--QP--DQARIAALNARHFLKPG 171 (229)
T ss_dssp GTTTS--EEEEEEE-S--ST--THHHHHHHHHHHHEEEE
T ss_pred hhcccccccEEEecCC--Ch--HHHHHHHHHHHhhccCC
Confidence 11246777765421 11 22235777887888765
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.033 Score=51.73 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=44.0
Q ss_pred CceeeEeeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcC----CCC-CCCCCCcc
Q 024811 158 HLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQD-FTPETGRY 231 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d----~~~-~~~~~~~y 231 (262)
.-++||||+|.--+=-.|..+ +.=++.++|+++..++.|+++++.- +.....|.+.... +.. .....+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N----~~L~~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN----PNLESRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-----T-TTTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc----cccccceEEEEcCCccccchhhhccccee
Confidence 568999999987543333322 3457899999999999999998641 1233456665432 211 11123589
Q ss_pred chhhhhhHHhhcCch
Q 024811 232 DVIWVQWCIGHLTDD 246 (262)
Q Consensus 232 DlI~s~~vl~hltD~ 246 (262)
|+.+|+..|+--.++
T Consensus 179 dftmCNPPFy~s~~e 193 (299)
T PF05971_consen 179 DFTMCNPPFYSSQEE 193 (299)
T ss_dssp EEEEE-----SS---
T ss_pred eEEecCCccccChhh
Confidence 999999997766554
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.028 Score=49.34 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=50.8
Q ss_pred eeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCC-CCCCCCCCccchhhhhh
Q 024811 161 ALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVIWVQW 238 (262)
Q Consensus 161 VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~-~~~~~~~~~yDlI~s~~ 238 (262)
|.||||--|.+...|+++. .+.|.++|.++.-++.|++++.... ....+.+..+|- ..+.+. +..|+|+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~-----l~~~i~~rlgdGL~~l~~~-e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG-----LEDRIEVRLGDGLEVLKPG-EDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE-SGGGG--GG-G---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CcccEEEEECCcccccCCC-CCCCEEEEec
Confidence 6899999999999999543 3579999999999999999997642 235788999984 445442 2378888754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.07 Score=51.98 Aligned_cols=84 Identities=18% Similarity=0.189 Sum_probs=57.1
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~s 236 (262)
.-.|||||.|||-++...+......|+++|.-..|.+.|++-...- .-..+++.+...-.+..-. ..+-|.++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kn-----g~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKN-----GMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcC-----CCccceeeeccccceeeecCcchhhhhhH
Confidence 3478999999999999999666788999999999999999865421 1224667765544444322 134676665
Q ss_pred hhHHhhcCch
Q 024811 237 QWCIGHLTDD 246 (262)
Q Consensus 237 ~~vl~hltD~ 246 (262)
--...-+.-+
T Consensus 142 e~fdtElige 151 (636)
T KOG1501|consen 142 EDFDTELIGE 151 (636)
T ss_pred hhhhhhhhcc
Confidence 5444444433
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.078 Score=47.32 Aligned_cols=97 Identities=14% Similarity=0.081 Sum_probs=70.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~yDlI 234 (262)
++++||.+|=|-|.+.-.+-...-..=.+||+.|..+...+..--. ...++-++.+-+|+.-+ +++.||-|
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~-------ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR-------EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc-------cccceEEEecchHhhhccccccCccee
Confidence 5889999999999988877733333446899999999988886432 22467778888887633 34689998
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+-----.|- +|+..|.+.+-++|||+
T Consensus 174 ~yDTy~e~y--Edl~~~hqh~~rLLkP~ 199 (271)
T KOG1709|consen 174 YYDTYSELY--EDLRHFHQHVVRLLKPE 199 (271)
T ss_pred EeechhhHH--HHHHHHHHHHhhhcCCC
Confidence 754222333 34668889999999996
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.034 Score=49.81 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=36.1
Q ss_pred CceeeEeeccccHHHHHHHHhcC---------CcEEEEeCCHHHHHHHHhhccc
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~---------~~V~~VD~s~~mld~Ar~~l~~ 202 (262)
+.+|+|+|+|.|.++..++.... .++.+||+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 47999999999999999994332 2699999999999999999865
|
; PDB: 4F3N_A 1ZKD_B. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.08 Score=50.32 Aligned_cols=101 Identities=11% Similarity=-0.027 Sum_probs=61.9
Q ss_pred CceeeEeeccccHHHHHHHHhcCC---cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~---~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
+.+|||||.|+|...-.+- ..++ .+.++|.|+..-++-..-...... +.......-+..|-.+++.. ..|++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n-~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--~~td~r~s~vt~dRl~lp~a-d~ytl~ 189 (484)
T COG5459 114 PQSILDVGAGPGTGLWALN-DIWPDLKSAVILEASPALRKVGDTLAENVST--EKTDWRASDVTEDRLSLPAA-DLYTLA 189 (484)
T ss_pred cchhhccCCCCchhhhhhc-ccCCCchhhhhhccCHHHHHHHHHHHhhccc--ccCCCCCCccchhccCCCcc-ceeehh
Confidence 5579999999998665554 5554 678889998776544332111000 00011112223344445443 589999
Q ss_pred hhhhHHhhcCch-hHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDD-DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~-el~~~l~~~~~~LkPG 262 (262)
+...-|-|...+ ++...++++..++.||
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~g 218 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPG 218 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCC
Confidence 988766666554 5666899999998886
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.03 Score=47.24 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=28.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcC---CcEEEEeCCHH
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSH 191 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~---~~V~~VD~s~~ 191 (262)
.+.+|||+||+||..+..++ +.. ..|.+||+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~-~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLL-QRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHH-TSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeee-ecccccceEEEEecccc
Confidence 35899999999999999999 554 68999998876
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.025 Score=50.69 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=50.0
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCC---CCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP---DMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~---~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
.+|||+=+|-|+-+.-++ ..+.+|+++|-||.+-...+.-+..+..... ....+++++.+|..++-. +..+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA-~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLA-SLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHH-HHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHH-ccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 389999999999999999 6788999999999887777665544322110 112578999999988632 24699999
Q ss_pred hhhhHHhh
Q 024811 235 WVQWCIGH 242 (262)
Q Consensus 235 ~s~~vl~h 242 (262)
+.-..|.|
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 98665544
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.046 Score=49.78 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=52.6
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC--CCccchhhhh
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQ 237 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~--~~~yDlI~s~ 237 (262)
+++|+-||.|.++.-|....+..|.++|.++..++..+.+... .+++.|+.++.+. ...+|+|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~------------~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------------KLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC------------CCccCccccCchhhcCCCCCEEEeC
Confidence 6999999999999999844466788899999999999998632 1566777777543 2579999976
Q ss_pred h
Q 024811 238 W 238 (262)
Q Consensus 238 ~ 238 (262)
.
T Consensus 70 p 70 (275)
T cd00315 70 F 70 (275)
T ss_pred C
Confidence 5
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.031 Score=54.49 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=58.7
Q ss_pred CCceeeEeeccccHHHHHHH--Hhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLL--IRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La--~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.+..++|+|.|.|.-.-.+. .+. -..+++||.|..|...+...+....+++.....++.|+..-+-- +....||+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi--~~~~~yDl 277 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPI--DIKNGYDL 277 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCC--Ccccceee
Confidence 36789999998887443333 122 35689999999999999998866433322222233443322221 12356999
Q ss_pred hhhhhHHhhcCchhH
Q 024811 234 IWVQWCIGHLTDDDF 248 (262)
Q Consensus 234 I~s~~vl~hltD~el 248 (262)
|++...++|+.....
T Consensus 278 vi~ah~l~~~~s~~~ 292 (491)
T KOG2539|consen 278 VICAHKLHELGSKFS 292 (491)
T ss_pred EEeeeeeeccCCchh
Confidence 999999999998653
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.077 Score=48.00 Aligned_cols=98 Identities=12% Similarity=0.006 Sum_probs=55.1
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC---CCCCCc-cch
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETGR-YDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~---~~~~~~-yDl 233 (262)
..+||++|+|+|-.+...+...+.+|.+.|....+......+-.. ..........+.....++.+. ..-... +|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~-~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKN-NIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhh-hhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 457999999999888888866778888887766554433221100 000001111334443333332 211123 999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhh
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVN 258 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~ 258 (262)
|+++-|+.+-...+ .+++.++..
T Consensus 166 ilasDvvy~~~~~e--~Lv~tla~l 188 (248)
T KOG2793|consen 166 ILASDVVYEEESFE--GLVKTLAFL 188 (248)
T ss_pred EEEeeeeecCCcch--hHHHHHHHH
Confidence 99998877776654 344444333
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.18 Score=47.74 Aligned_cols=101 Identities=17% Similarity=0.091 Sum_probs=69.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCC----cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC---CC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFN----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PE 227 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~----~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~---~~ 227 (262)
..++.+|||+.+++|.=|.+++ +... .|+++|.|+.=+...++++... +..++..++.|...+. +.
T Consensus 154 p~pge~VlD~cAAPGGKTthla-~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl------G~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLA-ELMENEGAIVVAVDVSPKRLKRLRENLKRL------GVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHH-HhcCCCCceEEEEcCCHHHHHHHHHHHHHc------CCCceEEEecccccccccccc
Confidence 4468999999999999999999 5543 3799999999999999999765 2345667777765432 22
Q ss_pred CCccchhhhh------hHH-------hhcCchh-------HHHHHHHHHhhccCC
Q 024811 228 TGRYDVIWVQ------WCI-------GHLTDDD-------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 228 ~~~yDlI~s~------~vl-------~hltD~e-------l~~~l~~~~~~LkPG 262 (262)
.++||.|..- .++ ...+..+ ..++|..+.+.||||
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G 281 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG 281 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2258887742 122 2222221 125888888999887
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.098 Score=46.26 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=46.8
Q ss_pred CceeeEeeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHhhccccccc-CCCCCcceEEEEcCCCCC
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDF 224 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~--V~~VD~s~~mld~Ar~~l~~a~~~-~~~~~~~v~f~~~d~~~~ 224 (262)
.-...|||||-|.+...|+ ..|+. +.+.|+--+.-|..++++...+.. +....+++.....+..-+
T Consensus 61 kvefaDIGCGyGGLlv~Ls-p~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~ 129 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLA-PKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF 129 (249)
T ss_pred cceEEeeccCccchhhhcc-ccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence 3468999999999999999 77874 667788888888888888665433 222345566655554444
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.13 Score=46.49 Aligned_cols=81 Identities=14% Similarity=0.043 Sum_probs=57.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
.+.+|+|||||.=-++.+.. ... ..+.+.|++..+++....-+... ....++...|+..-.++ ..+|+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~-~~~~~a~Y~a~DID~~~ve~l~~~l~~l-------~~~~~~~v~Dl~~~~~~-~~~Dla 175 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWM-PEAPGATYIAYDIDSQLVEFLNAFLAVL-------GVPHDARVRDLLSDPPK-EPADLA 175 (251)
T ss_dssp --SEEEEET-TTCHHHHHTT-TSSTT-EEEEEESBHHHHHHHHHHHHHT-------T-CEEEEEE-TTTSHTT-SEESEE
T ss_pred CCchhhhhhccCCceehhhc-ccCCCcEEEEEeCCHHHHHHHHHHHHhh-------CCCcceeEeeeeccCCC-CCcchh
Confidence 47899999999999999888 443 47899999999999998877542 34567777888776554 689998
Q ss_pred hhhhHHhhcCch
Q 024811 235 WVQWCIGHLTDD 246 (262)
Q Consensus 235 ~s~~vl~hltD~ 246 (262)
...=+++=+...
T Consensus 176 LllK~lp~le~q 187 (251)
T PF07091_consen 176 LLLKTLPCLERQ 187 (251)
T ss_dssp EEET-HHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 876555555443
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.12 Score=49.15 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=39.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhc---------CCcEEEEeCCHHHHHHHHhhccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~---------~~~V~~VD~s~~mld~Ar~~l~~ 202 (262)
.+.+..++|+|+|.|.++..++... ..++.+||+|++....-++.++.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 3346789999999999999999443 23789999999999999998865
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.2 Score=48.01 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=36.4
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
-..|+|+|+|.|.++..|...++..|.+||-|....+.|+.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 45799999999999999998888899999999888877754
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.083 Score=44.58 Aligned_cols=81 Identities=20% Similarity=0.089 Sum_probs=57.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
+.++.+|+|+|-||+-...+ +.+ -..+++|+++=.+..++-..-.+ ...+..+|...|+-.++.. .|..++
T Consensus 72 ~~GklvDlGSGDGRiVlaaa-r~g~~~a~GvELNpwLVaysrl~a~R~-----g~~k~trf~RkdlwK~dl~--dy~~vv 143 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAA-RCGLRPAVGVELNPWLVAYSRLHAWRA-----GCAKSTRFRRKDLWKVDLR--DYRNVV 143 (199)
T ss_pred CCCcEEeccCCCceeehhhh-hhCCCcCCceeccHHHHHHHHHHHHHH-----hcccchhhhhhhhhhcccc--ccceEE
Confidence 45789999999999998888 544 56789999999999988764322 1234678888888777654 466555
Q ss_pred hhhHHhhcCc
Q 024811 236 VQWCIGHLTD 245 (262)
Q Consensus 236 s~~vl~hltD 245 (262)
...+=.-++|
T Consensus 144 iFgaes~m~d 153 (199)
T KOG4058|consen 144 IFGAESVMPD 153 (199)
T ss_pred EeehHHHHhh
Confidence 5544333444
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.39 Score=42.80 Aligned_cols=76 Identities=14% Similarity=0.009 Sum_probs=56.3
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+.++.||||=-|++...|.+.. ...+...|.++.-++.|.++++.. .....++..++|-...-.....+|+|+.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~-----~l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN-----NLSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc-----CCcceEEEeccCCccccCccCCcCEEEE
Confidence 5569999999999999999553 457889999999999999998753 2334566666665332112247999887
Q ss_pred hh
Q 024811 237 QW 238 (262)
Q Consensus 237 ~~ 238 (262)
..
T Consensus 92 AG 93 (226)
T COG2384 92 AG 93 (226)
T ss_pred eC
Confidence 64
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.18 Score=46.22 Aligned_cols=75 Identities=16% Similarity=0.087 Sum_probs=55.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCcc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRY 231 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~y 231 (262)
.++.+|||+.||+|.=|..++.... ..|.+.|.++.-+...++++... +..++.....|...+.+ ....|
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~------g~~~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL------GVFNVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT------T-SSEEEEESHHHHHHHHHHTTTE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc------CCceEEEEeecccccccccccccc
Confidence 3578999999999999999995544 47999999999999999988654 33466666666554421 11358
Q ss_pred chhhh
Q 024811 232 DVIWV 236 (262)
Q Consensus 232 DlI~s 236 (262)
|.|+.
T Consensus 158 d~Vlv 162 (283)
T PF01189_consen 158 DRVLV 162 (283)
T ss_dssp EEEEE
T ss_pred chhhc
Confidence 88775
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.29 Score=45.86 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=66.1
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccccc---c----------------------c------
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN---H----------------------M------ 206 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~---~----------------------~------ 206 (262)
..+||==|||.||++..|+ ..+..+.+-|.|--|+=++.=.+...+ + .
T Consensus 151 ki~iLvPGaGlGRLa~dla-~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLA-CLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHH-HhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 5689999999999999999 667778888999999876654431100 0 0
Q ss_pred -CCCCCcceEE--EEcCCCCCCCC---CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 207 -APDMHKATNF--FCVPLQDFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 207 -~~~~~~~v~f--~~~d~~~~~~~---~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.......| --+|+.+.-+. .+.||+|+.+|.+--.. .+..+|..+...|+||
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPG 289 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCC
Confidence 0000011112 23565554332 24799999885433222 3558999999999997
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.066 Score=45.78 Aligned_cols=122 Identities=14% Similarity=0.066 Sum_probs=67.7
Q ss_pred cccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCC
Q 024811 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAP 208 (262)
Q Consensus 131 s~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~ 208 (262)
-++-+-.++..|...+.+.. ..-.+.+||++|.|-=.++-.++.-. -..|-+.|-+++.++-.++-...-..
T Consensus 6 gnvciwpseeala~~~l~~~---n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~--- 79 (201)
T KOG3201|consen 6 GNVCIWPSEEALAWTILRDP---NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA--- 79 (201)
T ss_pred CcEEecccHHHHHHHHHhch---hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc---
Confidence 34455556666665543211 11135789999999655555444132 24788999999998877765432100
Q ss_pred CCCcce---EEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 209 DMHKAT---NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 209 ~~~~~v---~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
...... +...-..+.. .+...||.|+|.-|+.+=.--+ .+.+.+...|+|
T Consensus 80 s~~tsc~vlrw~~~~aqsq-~eq~tFDiIlaADClFfdE~h~--sLvdtIk~lL~p 132 (201)
T KOG3201|consen 80 SSLTSCCVLRWLIWGAQSQ-QEQHTFDIILAADCLFFDEHHE--SLVDTIKSLLRP 132 (201)
T ss_pred cccceehhhHHHHhhhHHH-HhhCcccEEEeccchhHHHHHH--HHHHHHHHHhCc
Confidence 001111 1111111111 1235899999998764433233 677888888887
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.94 Score=41.78 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=61.4
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEE
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~ 217 (262)
+++-.++. ..++.+|+|-|.|.|.++-.+++...+ ++.-+|.-+.--+.|.+.+... .-..+++++
T Consensus 95 a~I~~~L~-------i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-----gi~~~vt~~ 162 (314)
T KOG2915|consen 95 AMILSMLE-------IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-----GIGDNVTVT 162 (314)
T ss_pred HHHHHHhc-------CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-----CCCcceEEE
Confidence 45555554 457899999999999999999954443 6777898888888888877542 134688888
Q ss_pred EcCCCCCCC--CCCccchhhhh
Q 024811 218 CVPLQDFTP--ETGRYDVIWVQ 237 (262)
Q Consensus 218 ~~d~~~~~~--~~~~yDlI~s~ 237 (262)
.-|+..-.+ ....+|+|+.-
T Consensus 163 hrDVc~~GF~~ks~~aDaVFLD 184 (314)
T KOG2915|consen 163 HRDVCGSGFLIKSLKADAVFLD 184 (314)
T ss_pred EeecccCCccccccccceEEEc
Confidence 877765433 23578887654
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.36 Score=45.12 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=53.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-----C-CCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-ETG 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-----~-~~~ 229 (262)
+++..+|+=-|.|..|..++... ...|.++|.++.+++.|++++... ..++.++..++.++. . ...
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-------~~r~~~~~~~F~~l~~~l~~~~~~~ 92 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-------DDRFIFIHGNFSNLDEYLKELNGIN 92 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-------CTTEEEEES-GGGHHHHHHHTTTTS
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-------cceEEEEeccHHHHHHHHHHccCCC
Confidence 57789999999999999999543 357999999999999999998642 346777777766542 1 123
Q ss_pred ccchhhhhh--HHhhcCchh
Q 024811 230 RYDVIWVQW--CIGHLTDDD 247 (262)
Q Consensus 230 ~yDlI~s~~--vl~hltD~e 247 (262)
.+|.|+.-. +.+|+.+++
T Consensus 93 ~~dgiL~DLGvSS~Qld~~~ 112 (310)
T PF01795_consen 93 KVDGILFDLGVSSMQLDDPE 112 (310)
T ss_dssp -EEEEEEE-S--HHHHHTGG
T ss_pred ccCEEEEccccCHHHhCCCC
Confidence 556555432 345555544
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.91 Score=38.57 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=38.9
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
.+++.++... ..++..|||.=||+|..+.... +.+.+..++|+++...+.|++
T Consensus 179 ~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhh-----hccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 3455555422 2368899999999999877777 788899999999999999975
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins [] | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.52 Score=39.60 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=42.6
Q ss_pred cCCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCCccCCHHHHHHH
Q 024811 34 AKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWRE 90 (262)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~g~ef~s~~e~W~~ 90 (262)
.+...+|+..|++|++++-+++.+++.- ++++.|.+-|.+..|.+ |..++-+.
T Consensus 68 ~~~D~vvly~PKaK~e~~~lL~~l~~~L--~~g~~i~vVGEnk~GIk--Sa~K~L~~ 120 (155)
T PF08468_consen 68 QDFDTVVLYWPKAKAEAQYLLANLLSHL--PPGTEIFVVGENKGGIK--SAEKQLAP 120 (155)
T ss_dssp TT-SEEEEE--SSHHHHHHHHHHHHTTS---TT-EEEEEEEGGGTGG--GHHHHHTT
T ss_pred cCCCEEEEEccCcHHHHHHHHHHHHHhC--CCCCEEEEEecCcccHH--HHHHHHHh
Confidence 4567899999999999999999999954 35899999999999999 99988753
|
; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.68 Score=43.64 Aligned_cols=45 Identities=18% Similarity=0.069 Sum_probs=38.4
Q ss_pred CCCCceeeEeeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhh
Q 024811 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (262)
Q Consensus 155 ~~~~~~VLDlGcGt-G~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~ 199 (262)
..++.+||..|||+ |..+..+++..+. +|.+++.++++++.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 34577999999998 9999999977665 599999999999999886
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.88 E-value=0.5 Score=43.48 Aligned_cols=91 Identities=16% Similarity=0.070 Sum_probs=53.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccccccc----CCCCCcceEEEEcCCCCCCC-CCC--
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM----APDMHKATNFFCVPLQDFTP-ETG-- 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~----~~~~~~~v~f~~~d~~~~~~-~~~-- 229 (262)
.+.+|||+|||.|-.....-......++..|.|...++.-.--...+... ..+......+.+.++.++.. ..+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~ 195 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERT 195 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcccc
Confidence 57799999999999999888454478888999988884211110000000 01122233344442223322 113
Q ss_pred ccchhhhhhHHhhcCchh
Q 024811 230 RYDVIWVQWCIGHLTDDD 247 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~e 247 (262)
.||+|.++-.+.-.+...
T Consensus 196 ~ydlIlsSetiy~~~~~~ 213 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLA 213 (282)
T ss_pred chhhhhhhhhhhCcchhh
Confidence 799999987765555443
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=88.37 E-value=0.05 Score=41.69 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=33.3
Q ss_pred eEeeccccHHHHHHHHhc--C--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCccchhh
Q 024811 162 LDCGSGIGRITKNLLIRY--F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVIW 235 (262)
Q Consensus 162 LDlGcGtG~lt~~La~~~--~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~yDlI~ 235 (262)
||+|+..|..|..+++.. . .++.+||+.+. .+.+++.+... ....++.++.++..++-+ ..++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-----~~~~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-----GLSDRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------G-----GG-BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc-----CCCCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 689999999999888322 1 26899999995 22222222111 012468999998866521 125899988
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.-.. |-. +.....+..+...|+||
T Consensus 75 iDg~--H~~-~~~~~dl~~~~~~l~~g 98 (106)
T PF13578_consen 75 IDGD--HSY-EAVLRDLENALPRLAPG 98 (106)
T ss_dssp EES-----H-HHHHHHHHHHGGGEEEE
T ss_pred ECCC--CCH-HHHHHHHHHHHHHcCCC
Confidence 7642 221 22335677777777775
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.62 E-value=1 Score=41.17 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=67.5
Q ss_pred CceeeEeeccccHHHHHHHHhcC------CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CCCCC
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETG 229 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~------~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~~~~ 229 (262)
....+|+|+|+-.=|+.|+ +.+ -...-||.|+..+...-+.+...- ..-.+.-+++|.+.. .++..
T Consensus 79 ~~~lveLGsGns~Ktr~Ll-da~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y-----~~l~v~~l~~~~~~~La~~~~~ 152 (321)
T COG4301 79 ACTLVELGSGNSTKTRILL-DALAHRGSLLRYVPIDVSASILRATATAILREY-----PGLEVNALCGDYELALAELPRG 152 (321)
T ss_pred cceEEEecCCccHHHHHHH-HHhhhcCCcceeeeecccHHHHHHHHHHHHHhC-----CCCeEeehhhhHHHHHhcccCC
Confidence 5689999999999999998 443 257789999999886655543210 111344456666442 11122
Q ss_pred -ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 -RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 -~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+-=.++...+++.++..+...||.+++..|.||
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pG 186 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPG 186 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCc
Confidence 222233445799999999999999999999998
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.26 E-value=2.3 Score=42.62 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=72.1
Q ss_pred CceeeEeeccccHHHHHHHHhc---CC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 158 HLVALDCGSGIGRITKNLLIRY---FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~---~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
...|+=+|+|-|-+....++.. .. ++.+||=+|.++-..+.+--. .-..+++++.+||..|.++..+.|
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~------~W~~~Vtii~~DMR~w~ap~eq~D 441 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE------CWDNRVTIISSDMRKWNAPREQAD 441 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh------hhcCeeEEEeccccccCCchhhcc
Confidence 4578899999999887776322 22 467889999888777663211 123589999999999986547899
Q ss_pred hhhhhhHHhhcCchhHH-HHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFV-SFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~-~~l~~~~~~LkPG 262 (262)
++||- .|+-+.|.|+. +.|.-+...|||.
T Consensus 442 I~VSE-LLGSFGDNELSPECLDG~q~fLkpd 471 (649)
T KOG0822|consen 442 IIVSE-LLGSFGDNELSPECLDGAQKFLKPD 471 (649)
T ss_pred chHHH-hhccccCccCCHHHHHHHHhhcCCC
Confidence 98876 47778887764 5788888888873
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.04 E-value=1.2 Score=40.38 Aligned_cols=98 Identities=17% Similarity=0.107 Sum_probs=55.5
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHH--hcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEE
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLI--RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~--~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~ 217 (262)
..|..++...-.+ -..+..++||||.|--- --+|+. .++-+.++.|.++..++.|+..+..- . .....+++.
T Consensus 62 h~laDLL~s~~g~-~~~~~i~~LDIGvGAnC-IYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N-~---~l~~~I~lr 135 (292)
T COG3129 62 HHLADLLASTSGQ-IPGKNIRILDIGVGANC-IYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISAN-P---GLERAIRLR 135 (292)
T ss_pred HHHHHHHHhcCCC-CCcCceEEEeeccCccc-ccccccceeecceeecCccCHHHHHHHHHHHHcC-c---chhhheeEE
Confidence 4566666532111 12356789999877432 233331 12346788999999999999887531 1 112234443
Q ss_pred E-cCCC----CCCCCCCccchhhhhhHHhhc
Q 024811 218 C-VPLQ----DFTPETGRYDVIWVQWCIGHL 243 (262)
Q Consensus 218 ~-~d~~----~~~~~~~~yDlI~s~~vl~hl 243 (262)
. .|-. +..-..+.||++.||..||--
T Consensus 136 ~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 136 RQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred eccCccccccccccccceeeeEecCCCcchh
Confidence 2 2211 111123689999999987643
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.85 E-value=2.1 Score=38.97 Aligned_cols=58 Identities=17% Similarity=0.051 Sum_probs=46.0
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccc
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~ 202 (262)
..+++.++... ..+++.|||.=||+|..+.... +.+.+..++|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILAS-----SNPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 34566665421 2368899999999999777666 7788999999999999999999853
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.52 E-value=0.43 Score=44.45 Aligned_cols=105 Identities=13% Similarity=0.082 Sum_probs=72.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yD 232 (262)
..+.++|=||.|-|.+.+..+++. +.+++++|.....++.+++.+...... =.++++.++-+|-..|- ...++||
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g--y~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG--YEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc--cCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999888442 568999999999999999887542111 12457788877765441 1237999
Q ss_pred hhhhhhH--HhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWC--IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~v--l~hltD~el~~~l~~~~~~LkPG 262 (262)
+|+.-.+ ++--...=...++.-+.+.||||
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~d 229 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGD 229 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCC
Confidence 9985432 22222211235888888888885
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=85.51 E-value=2.8 Score=37.18 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=40.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~ 202 (262)
+++.|||.=||+|....... +.+.+..++|++++..+.|.+++..
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHH
Confidence 57899999999999887777 7788999999999999999998854
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.35 E-value=1.1 Score=39.26 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=25.2
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEP 188 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~ 188 (262)
+.++.+||||||.+|..+.-..++..+ -|.+||+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 346889999999999999988854434 3556653
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.20 E-value=2.4 Score=43.89 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=63.5
Q ss_pred ceeeEeeccccHHHHHHHHhcCC------cEEEEeCCHHHHHHHHhhcccccccCC---CCCcceEEEEcCCCCCCCCC-
Q 024811 159 LVALDCGSGIGRITKNLLIRYFN------EVDLLEPVSHFLDAARESLAPENHMAP---DMHKATNFFCVPLQDFTPET- 228 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~------~V~~VD~s~~mld~Ar~~l~~a~~~~~---~~~~~v~f~~~d~~~~~~~~- 228 (262)
..|+=+|+|-|-+-...+ +... +|.+||=++..+.....+......+.. ..+..++++..||.+|..+.
T Consensus 702 vVImVVGAGRGPLVdraL-rAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~ 780 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECL-HAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAE 780 (1072)
T ss_pred EEEEEEcCCccHHHHHHH-HHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccc
Confidence 468999999999888777 4322 688899886543333333211111100 01346899999999996431
Q ss_pred ----------CccchhhhhhHHhhcCchhHH-HHHHHHHhhccC
Q 024811 229 ----------GRYDVIWVQWCIGHLTDDDFV-SFFKRAKVNHSQ 261 (262)
Q Consensus 229 ----------~~yDlI~s~~vl~hltD~el~-~~l~~~~~~LkP 261 (262)
+++|+|||- .|+=|-|.||. +-|.-+.+.|||
T Consensus 781 ~~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 781 NGSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred cccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhh
Confidence 379998886 46777776653 466666666653
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.88 E-value=1 Score=40.58 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=45.4
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~ 225 (262)
..-|.+||.|+|.+|+.++.....+.++||.++.++.-.+-..+.+ .....++..|+..|.
T Consensus 51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa-------~~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA-------PGKLRIHHGDVLRFK 111 (326)
T ss_pred cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC-------CcceEEeccccceeh
Confidence 5679999999999999999555678999999999988766543322 235566677766553
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=82.21 E-value=1.2 Score=41.47 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=47.8
Q ss_pred eeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchhhhhh
Q 024811 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQW 238 (262)
Q Consensus 161 VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~s~~ 238 (262)
|+|+=||.|.++.-|-...+.-+-.+|.++..++.-+.+... .++..|+.++.+. -..+|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------------~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------------KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------------CCCccChhhhhhhhCCCcCEEEecC
Confidence 689999999999999844455566799999999999888631 3345667666432 13578887654
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.48 E-value=4.3 Score=35.89 Aligned_cols=98 Identities=14% Similarity=0.022 Sum_probs=60.6
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHH----------HHHHHHhhcccccccCCCCCcceEEEEcCC
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSH----------FLDAARESLAPENHMAPDMHKATNFFCVPL 221 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~----------mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~ 221 (262)
+++++.+|+|+=.|.|..|+.|+.-.++ .|..+-|.+. +-..+++. ...|...+..++
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~----------~~aN~e~~~~~~ 114 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP----------VYANVEVIGKPL 114 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh----------hhhhhhhhCCcc
Confidence 4567899999999999999999933333 4555533332 11122221 123555566666
Q ss_pred CCCCCCCCccchhhhhhH--HhhcCc---hhHHHHHHHHHhhccCC
Q 024811 222 QDFTPETGRYDVIWVQWC--IGHLTD---DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 222 ~~~~~~~~~yDlI~s~~v--l~hltD---~el~~~l~~~~~~LkPG 262 (262)
..+.+ +...|++|-+.. ..|+.. .-..++...+.+.||||
T Consensus 115 ~A~~~-pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPG 159 (238)
T COG4798 115 VALGA-PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPG 159 (238)
T ss_pred cccCC-CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCC
Confidence 66654 367888887433 222222 22337999999999998
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.45 E-value=6.4 Score=34.96 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=40.5
Q ss_pred HHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhh
Q 024811 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 142 L~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~ 199 (262)
|...+.+.+.+.++.++.+||=+|+-+|....+++ ... ..|.+||.|+.+....-..
T Consensus 61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVS-DIv~~G~iYaVEfs~R~~reLl~~ 119 (231)
T COG1889 61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVS-DIVGEGRIYAVEFSPRPMRELLDV 119 (231)
T ss_pred HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHH-hccCCCcEEEEEecchhHHHHHHH
Confidence 44433333333356678999999999999999999 653 3589999999876544443
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=81.29 E-value=1.4 Score=35.12 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=28.2
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEe
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD 187 (262)
.+||..+-...- +..+...-+|+|||.|-+.--|. .-+..-.++|
T Consensus 43 AAyLi~LW~~~~---~~~~~~~FVDlGCGNGLLV~IL~-~EGy~G~GiD 87 (112)
T PF07757_consen 43 AAYLIELWRDMY---GEQKFQGFVDLGCGNGLLVYILN-SEGYPGWGID 87 (112)
T ss_pred HHHHHHHHhccc---CCCCCCceEEccCCchHHHHHHH-hCCCCccccc
Confidence 456665544221 11235578999999999988888 4444445565
|
; GO: 0008168 methyltransferase activity |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=81.16 E-value=2.7 Score=33.80 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=25.0
Q ss_pred Eeecccc--HHHHHHHH-hc--CCcEEEEeCCHHHHHHHHhh
Q 024811 163 DCGSGIG--RITKNLLI-RY--FNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 163 DlGcGtG--~lt~~La~-~~--~~~V~~VD~s~~mld~Ar~~ 199 (262)
|||+..| ..+..++. .. ..+|.++||+|...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 66666542 22 45689999999999999888
|
; PDB: 2PY6_A. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=81.05 E-value=4.2 Score=37.96 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=48.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
+.+..+|+=-|-|..|..++.+.. .+++++|.++.+++.|++.+..- ..+++++...+.++
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------~~r~~~v~~~F~~l 85 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------DGRVTLVHGNFANL 85 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------CCcEEEEeCcHHHH
Confidence 468899999999999999996653 46999999999999999988542 23566666555443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=80.93 E-value=6.4 Score=39.30 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=38.6
Q ss_pred CCCCceeeEeeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHhh
Q 024811 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 155 ~~~~~~VLDlGcGt-G~lt~~La~~~~~~V~~VD~s~~mld~Ar~~ 199 (262)
..++.+|+=+|||+ |..+...++..+..|.++|.++.-++.+++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 34588999999996 7788888877788999999999999999984
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 262 | ||||
| 2ex4_A | 241 | Crystal Structure Of Human Methyltransferase Ad-003 | 9e-35 | ||
| 1xtp_A | 254 | Structural Analysis Of Leishmania Major Lmaj004091a | 2e-31 |
| >pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In Complex With S-adenosyl-l-homocysteine Length = 241 | Back alignment and structure |
|
| >pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A Sam-dependent Methyltransferase Of The Duf858/pfam05891 Family Length = 254 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 6e-58
Identities = 73/196 (37%), Positives = 106/196 (54%), Gaps = 18/196 (9%)
Query: 61 PKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASV 120
K S + +SG D++GK +++ +EMW+ ++ G+ + + WY + + YW V A+V
Sbjct: 7 SKEASSRNLPISGRDTNGKTYRSTDEMWKAEL--TGDLYDPEKGWYGKALEYWRTVPATV 64
Query: 121 DGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180
GVLGG +V++VDI+GS F+ L A LDCG+GIGRITKNLL + +
Sbjct: 65 SGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRA--------LDCGAGIGRITKNLLTKLY 116
Query: 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCI 240
DLLEPV H L+ A+ LA F ++ T YD+I +QW
Sbjct: 117 ATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETATLPPNTYDLIVIQWTA 168
Query: 241 GHLTDDDFVSFFKRAK 256
+LTD DFV FFK +
Sbjct: 169 IYLTDADFVKFFKHCQ 184
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 2e-49
Identities = 69/164 (42%), Positives = 94/164 (57%), Gaps = 9/164 (5%)
Query: 93 GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPN 152
G E E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L +
Sbjct: 18 GSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK 77
Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212
+ LDCG+GIGRITK LL+ F EVD+++ FL A+ L E +
Sbjct: 78 TGTSCA---LDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG------KR 128
Query: 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256
N+FC LQDFTPE YDVIW+QW IGHLTD F +R K
Sbjct: 129 VRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCK 172
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 7e-06
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 2/94 (2%)
Query: 162 LDCGSGIGRITKNLL--IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
+D G G G + +LL + ++ L A + L + + K+ +
Sbjct: 726 VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDG 785
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFK 253
+ +F D+ I H+ +D F +
Sbjct: 786 SILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGE 819
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 20/116 (17%), Positives = 32/116 (27%), Gaps = 20/116 (17%)
Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198
A L L + A+ L+ G G G + +L F +VD + A
Sbjct: 31 SATLTKFLGELPAGAK------ILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASR 83
Query: 199 SLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKR 254
+ YD +W C+ H+ D+ K
Sbjct: 84 ------------RLGRPVRTMLFHQL-DAIDAYDAVWAHACLLHVPRDELADVLKL 126
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 7e-05
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
L+ +G+GR+T L + EV LE + L A R+ LA D+ +
Sbjct: 87 LELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAP---ADVRDRCTLVQGDM 142
Query: 222 QDFTPETGRYD-VIWVQWCIGHLTDDDFVSFFKRAK 256
F + R+ V+ I L + D + +
Sbjct: 143 SAFALD-KRFGTVVISSGSINELDEADRRGLYASVR 177
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 1e-04
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G G + LL + F ++ ++ L+ A++ L + + K + F
Sbjct: 34 IDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID-RLPEMQRKRISLFQSS 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFK 253
L YD V I HL ++ +F K
Sbjct: 93 LVYRDKRFSGYDAATVIEVIEHLDENRLQAFEK 125
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR + L + +VD + + + + EN + V
Sbjct: 36 TLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENL------DNLHTRVVD 88
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256
L + T + +YD I + L +
Sbjct: 89 LNNLTFD-RQYDFILSTVVLMFLEAKTIPGLIANMQ 123
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD GSG GR T +L +++ LEP + ++ AR++ H + F
Sbjct: 45 ILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQT-----------HPSVTFHHGT 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRA 255
+ D + R+ + + + H+ +
Sbjct: 93 ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVAL 127
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 3e-04
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G G + K LL +F ++ ++ L+ A+E L +
Sbjct: 34 IDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQ-LIQGA 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKR 254
L YD V I HL +F +
Sbjct: 93 LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERV 126
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 5e-04
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 19/118 (16%)
Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198
A L+ L + L+ SG G T++L V L+ + + A
Sbjct: 35 PAALERLRAGN-IRGD------VLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR 86
Query: 199 SLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256
F L D+TP+ ++D ++ + H+ DD F +F++ +
Sbjct: 87 HGLD----------NVEFRQQDLFDWTPD-RQWDAVFFAHWLAHVPDDRFEAFWESVR 133
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 6e-04
Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 13/179 (7%)
Query: 57 AAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGV 116
A K E E L G + + ++ E + W G
Sbjct: 138 AGDKNKGFERYFKEARALLGYGVVVRREGPYRVALLEKEKEAPPLPSLWRAFSARI-LGA 196
Query: 117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL 176
E + + G F +VD S L+ L P + ++ L G G + L
Sbjct: 197 EYTFHHLPGVFSA-GKVDP-ASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLP---L 251
Query: 177 IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235
R EV +E + + ++ L N + + + E R+D+I
Sbjct: 252 ARMGAEVVGVEDDLASVLSLQKGLE-ANALKAQALHSDVDEAL------TEEARFDIIV 303
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 262 | |||
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.92 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.85 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.74 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.74 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.73 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.72 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.71 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.7 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.7 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.7 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.69 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.69 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.69 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.69 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.68 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.68 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.68 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.68 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.67 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.67 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.67 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.67 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.66 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.65 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.65 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.65 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.64 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.64 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.64 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.63 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.63 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.63 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.63 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.63 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.63 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.63 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.63 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.63 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.62 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.62 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.61 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.61 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.61 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.61 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.61 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.61 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.61 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.61 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.61 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.61 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.6 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.6 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.6 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.6 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.59 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.59 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.59 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.59 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.58 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.58 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.58 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.58 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.57 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.57 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.56 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.56 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.55 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.55 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.54 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.54 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.53 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.53 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.53 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.51 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.5 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.5 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.5 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.49 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.49 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.48 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.47 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.47 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.47 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.47 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.46 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.46 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.46 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.46 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.45 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.45 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.45 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.43 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.43 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.43 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.42 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.41 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.41 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.41 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.4 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.4 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.4 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.4 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.4 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.4 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.4 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.39 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.39 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.39 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.39 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.39 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.38 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.38 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.37 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.37 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.37 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.36 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.35 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.35 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.35 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.35 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.34 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.34 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.34 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.34 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.34 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.33 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.33 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.33 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.33 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.33 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.33 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.32 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.32 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.32 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.32 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.32 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.31 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.31 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.3 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.3 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.3 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.3 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.3 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.29 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.29 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.28 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.28 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.28 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.28 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.28 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.28 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.27 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.27 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.26 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.26 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.26 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.26 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.25 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.25 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.25 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.25 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.25 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.24 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.24 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.24 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.24 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.24 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.24 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.23 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.23 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.23 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.23 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.23 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.22 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.22 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.22 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.22 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.22 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.21 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.21 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.21 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.2 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.2 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.2 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.2 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.19 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.19 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.18 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.18 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.18 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.18 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.17 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.17 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.17 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.17 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.16 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.16 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.15 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.15 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.14 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.13 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.13 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.13 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.12 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.12 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.12 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.12 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.12 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.12 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.11 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.11 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.1 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.1 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.1 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.1 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.1 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.09 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.08 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.08 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.08 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.08 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.08 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.07 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.06 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.05 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.05 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.03 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.03 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.02 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.02 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.02 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.0 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.99 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.99 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.98 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.98 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.97 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.96 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.96 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.96 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.96 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.96 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.94 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.94 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.91 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.91 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.9 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.9 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.87 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.86 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.84 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.78 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.77 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.76 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.74 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.74 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.74 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.72 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.71 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.7 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.7 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.7 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.69 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.64 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.63 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.6 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.41 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.36 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.34 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.33 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.31 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.25 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.25 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.2 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.19 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.18 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.06 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.98 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.96 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.92 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.84 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.84 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.8 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.8 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.78 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.77 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.7 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.69 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.61 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.6 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.55 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.54 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.51 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.43 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.1 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.61 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.53 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.32 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.17 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 95.74 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.61 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.45 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.19 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 95.18 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.05 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 94.36 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 94.03 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 93.79 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.53 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 90.98 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 89.2 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 88.88 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 88.25 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 87.96 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 87.39 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 86.06 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 85.2 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 84.69 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 83.36 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 81.08 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 80.74 |
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-26 Score=197.18 Aligned_cols=179 Identities=40% Similarity=0.756 Sum_probs=147.1
Q ss_pred CCceeecccCCCCCccCCHHHHHHHHhccccchhhhhhHhHhhHHhhhhccchhhccccCCCCCCcccchhhHHHHHHHH
Q 024811 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQML 145 (262)
Q Consensus 66 ~~~~~~~g~d~~g~ef~s~~e~W~~~~~~~~~~~~~~~~wy~~~~~yW~~~~~~~dgvlgGy~~is~~di~~s~~fL~~l 145 (262)
+..+.+.|.|++|++|.++.++|++.+..... .....||....+||+.....+++++++|..++..+......++..+
T Consensus 12 ~~~~~~~g~d~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 89 (254)
T 1xtp_A 12 SRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASL 89 (254)
T ss_dssp -CCCCCCEEETTSCEESCHHHHHHHHSCSCTT--CTTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTS
T ss_pred cccccccccCCCCcccccHHHHHHHHHhcccc--ccchhhhhhhhhHHhcCCccccceecCcCccCHHHHHHHHHHHHhh
Confidence 45677999999999999999999998876322 2233599999999999999999999988777666655444444433
Q ss_pred hhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC
Q 024811 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (262)
Q Consensus 146 l~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~ 225 (262)
. ..++.+|||+|||+|.++..|+.....+|+++|+|+.|++.|++++.. ..+++|+++|+.+++
T Consensus 90 ~--------~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~ 153 (254)
T 1xtp_A 90 P--------GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETAT 153 (254)
T ss_dssp T--------TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCGGGCC
T ss_pred c--------ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEccHHHCC
Confidence 1 235789999999999999999955566799999999999999998743 147899999998887
Q ss_pred CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 ~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++||+|+++++++|+++++...+|+++.++|+||
T Consensus 154 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 190 (254)
T 1xtp_A 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN 190 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCC
Confidence 6567999999999999999887889999999999996
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-22 Score=172.41 Aligned_cols=153 Identities=44% Similarity=0.865 Sum_probs=128.0
Q ss_pred hhhHhHhhHHhhhhccchhhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC
Q 024811 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180 (262)
Q Consensus 101 ~~~~wy~~~~~yW~~~~~~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~ 180 (262)
....||....+||+.....+++++++|..++..++..+..++..++.... ...++.+|||+|||+|.++..|+...+
T Consensus 26 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~~ 102 (241)
T 2ex4_A 26 DEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGP---NKTGTSCALDCGAGIGRITKRLLLPLF 102 (241)
T ss_dssp CHHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTC
T ss_pred ccchhHHHHHHHHhcCCccccccccCCCCcchhhHHhHHHHHHHHHHhcc---cCCCCCEEEEECCCCCHHHHHHHHhcC
Confidence 45689999999999999999999999988888887788888888765321 122477999999999999999995545
Q ss_pred CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhcc
Q 024811 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHS 260 (262)
Q Consensus 181 ~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~Lk 260 (262)
.+|+++|+|+.|++.|++++... ...+++|+++|+.++.+..++||+|+++++++|++++++..+|+++.++|+
T Consensus 103 ~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk 176 (241)
T 2ex4_A 103 REVDMVDITEDFLVQAKTYLGEE------GKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLR 176 (241)
T ss_dssp SEEEEEESCHHHHHHHHHHTGGG------GGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE
T ss_pred CEEEEEeCCHHHHHHHHHHhhhc------CCceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcC
Confidence 68999999999999999987542 123689999999888766578999999999999999888899999999999
Q ss_pred CC
Q 024811 261 QT 262 (262)
Q Consensus 261 PG 262 (262)
||
T Consensus 177 pg 178 (241)
T 2ex4_A 177 PN 178 (241)
T ss_dssp EE
T ss_pred CC
Confidence 86
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-19 Score=164.48 Aligned_cols=215 Identities=17% Similarity=0.126 Sum_probs=143.5
Q ss_pred CCeeEEEeccchh--HHHHHHHHhhcCCCCCCCCCceeecccCCCCCccCCHHHHHHHHhccc-cc-hhhhh-hHhHh--
Q 024811 35 KPTLHLLHVGRRK--EKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED-GE-QQEKK-TQWYR-- 107 (262)
Q Consensus 35 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~g~ef~s~~e~W~~~~~~~-~~-~~~~~-~~wy~-- 107 (262)
...++|+.+||+| ++++.++++|++.- ++++.|++.|.+++|.+ ++..+-+...+.. .. +.++. ..|+.
T Consensus 101 ~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l--~~g~~i~~~g~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 176 (381)
T 3dmg_A 101 AYDLVVLALPAGRGTAYVQASLVAAARAL--RMGGRLYLAGDKNKGFE--RYFKEARALLGYGVVVRREGPYRVALLEKE 176 (381)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHHHHHE--EEEEEEEEEEEGGGTHH--HHHHHHHHHHSCEEEEEEETTEEEEEEECC
T ss_pred CCCEEEEECCcchhHHHHHHHHHHHHHhC--CCCCEEEEEEccHHHHH--HHHHHHHhhhccccccccccCcEEEEEEcc
Confidence 4568999999887 67899999988832 13788999999999988 8888887665420 00 11111 12221
Q ss_pred ----hHHhhhhccchhhcc----ccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc
Q 024811 108 ----EGISYWEGVEASVDG----VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY 179 (262)
Q Consensus 108 ----~~~~yW~~~~~~~dg----vlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~ 179 (262)
.....|......+.+ +...-+.++...++....++...+.+.+. ....++.+|||+|||+|.++..++ +.
T Consensus 177 ~~~p~~~~~w~~~~~~~~g~~~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~-~~~~~~~~VLDlGcG~G~~~~~la-~~ 254 (381)
T 3dmg_A 177 KEAPPLPSLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLG-PEGVRGRQVLDLGAGYGALTLPLA-RM 254 (381)
T ss_dssp SCCCCCCCCCEEEEEEETTEEEEEEECTTCTTTTSCCHHHHHHHHHHHHHHC-TTTTTTCEEEEETCTTSTTHHHHH-HT
T ss_pred CCCCCCccccceeeEEecCceEEEEeCCCceeCCCCCHHHHHHHHHHHHhhc-ccCCCCCEEEEEeeeCCHHHHHHH-Hc
Confidence 123556543322111 00000112222222333434333322110 001246799999999999999999 55
Q ss_pred CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhh---cCchhHHHHHHHHH
Q 024811 180 FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH---LTDDDFVSFFKRAK 256 (262)
Q Consensus 180 ~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~h---ltD~el~~~l~~~~ 256 (262)
+.+|++||+|+.|++.|++++... ...++|+++|+.++.++.++||+|+|+.++|| ....+...+|+++.
T Consensus 255 g~~V~gvDis~~al~~A~~n~~~~-------~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~ 327 (381)
T 3dmg_A 255 GAEVVGVEDDLASVLSLQKGLEAN-------ALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAA 327 (381)
T ss_dssp TCEEEEEESBHHHHHHHHHHHHHT-------TCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHc-------CCCeEEEEcchhhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHH
Confidence 779999999999999999998642 22479999999998665579999999999988 44555668999999
Q ss_pred hhccCC
Q 024811 257 VNHSQT 262 (262)
Q Consensus 257 ~~LkPG 262 (262)
+.|+||
T Consensus 328 ~~LkpG 333 (381)
T 3dmg_A 328 ARLRPG 333 (381)
T ss_dssp HHEEEE
T ss_pred HhcCcC
Confidence 999986
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-18 Score=152.48 Aligned_cols=100 Identities=7% Similarity=0.125 Sum_probs=86.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~---~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
+++.+|||+|||+|.++..|++.. +.+|++||+|+.||+.|++++.... ...+++|+++|+.+++. +.||
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~-----~~~~v~~~~~D~~~~~~--~~~d 141 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-----APTPVDVIEGDIRDIAI--ENAS 141 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC-----CSSCEEEEESCTTTCCC--CSEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc-----cCceEEEeecccccccc--cccc
Confidence 367899999999999999999442 2379999999999999999986431 23479999999999866 4699
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++++++||+++++...+|++++++|+||
T Consensus 142 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG 171 (261)
T 4gek_A 142 MVVLNFTLQFLEPSERQALLDKIYQGLNPG 171 (261)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred cceeeeeeeecCchhHhHHHHHHHHHcCCC
Confidence 999999999999988888999999999997
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-18 Score=148.10 Aligned_cols=106 Identities=11% Similarity=0.002 Sum_probs=86.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccccccc---CC---CCCcceEEEEcCCCCCCCCC-
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM---AP---DMHKATNFFCVPLQDFTPET- 228 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~---~~---~~~~~v~f~~~d~~~~~~~~- 228 (262)
.++.+|||+|||+|+.+..|+ +.+.+|++||+|+.|++.|+++....... .. ....+++|+++|+.++++.+
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la-~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLS-GQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHH-HHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCCEEEEeCCCCcHhHHHHH-HCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 357899999999999999999 45679999999999999999875421000 00 01247899999999987643
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++||+|++..+++|+++++...+++++.++|+||
T Consensus 100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg 133 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 133 (203)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE
T ss_pred CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999887778999999999997
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-17 Score=141.36 Aligned_cols=94 Identities=23% Similarity=0.215 Sum_probs=85.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++. .+++++++|+.+++.. ++||+|++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~----------~~~~~~~~d~~~~~~~-~~fD~v~~ 112 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLL-LAGRTVYGIEPSREMRMIAKEKLP----------KEFSITEGDFLSFEVP-TSIDTIVS 112 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHH-HTTCEEEEECSCHHHHHHHHHHSC----------TTCCEESCCSSSCCCC-SCCSEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHH-hCCCeEEEEeCCHHHHHHHHHhCC----------CceEEEeCChhhcCCC-CCeEEEEE
Confidence 46799999999999999999 557799999999999999999864 2688999999998766 79999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|+++++...+|+++.++|+||
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~Lkpg 138 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKG 138 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTT
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCC
Confidence 99999999998666999999999997
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=139.53 Aligned_cols=104 Identities=18% Similarity=0.317 Sum_probs=89.2
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEE
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~ 218 (262)
..++..++.. .+.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|+++. .+++|++
T Consensus 31 ~~~l~~~~~~--------~~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~ 90 (203)
T 3h2b_A 31 RVLIEPWATG--------VDGVILDVGSGTGRWTGHLA-SLGHQIEGLEPATRLVELARQTH-----------PSVTFHH 90 (203)
T ss_dssp HHHHHHHHHH--------CCSCEEEETCTTCHHHHHHH-HTTCCEEEECCCHHHHHHHHHHC-----------TTSEEEC
T ss_pred HHHHHHHhcc--------CCCeEEEecCCCCHHHHHHH-hcCCeEEEEeCCHHHHHHHHHhC-----------CCCeEEe
Confidence 4556666542 26789999999999999999 55779999999999999999974 2689999
Q ss_pred cCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 219 VPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 219 ~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|+.+++..+++||+|+++.+++|+++++...+|+++.++|+||
T Consensus 91 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg 134 (203)
T 3h2b_A 91 GTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDG 134 (203)
T ss_dssp CCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEE
T ss_pred CcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCC
Confidence 99998876567999999999999999777779999999999986
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-17 Score=145.49 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=85.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccccc------ccCC-----CCCcceEEEEcCCCCCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN------HMAP-----DMHKATNFFCVPLQDFT 225 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~------~~~~-----~~~~~v~f~~~d~~~~~ 225 (262)
++.+|||+|||+|+.+..|+ +.+.+|++||+|+.|++.|+++..... .... ....+++|+++|+.+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La-~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFA-DRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHH-HTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CCCeEEEeCCCCcHHHHHHH-HCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 46799999999999999999 557799999999999999987653100 0000 01247899999999987
Q ss_pred CCC-CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 226 PET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 ~~~-~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.. ++||+|++..+++|+++++...+++++.++|+||
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG 184 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE 184 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC
Confidence 643 7999999999999999888778999999999997
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-17 Score=144.40 Aligned_cols=97 Identities=14% Similarity=0.235 Sum_probs=85.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++... ...+++|+.+|++++++++++||+|+|
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~l~~a~~~~~~~------~~~~v~~~~~d~~~l~~~~~~fD~V~~ 109 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFA-PFVKKVVAFDLTEDILKVARAFIEGN------GHQQVEYVQGDAEQMPFTDERFHIVTC 109 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHG-GGSSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCC-CCCSCTTCEEEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHH-HhCCEEEEEeCCHHHHHHHHHHHHhc------CCCceEEEEecHHhCCCCCCCEEEEEE
Confidence 57899999999999999999 66679999999999999999987542 224689999999998766679999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|++|++ .+|+++.++|+||
T Consensus 110 ~~~l~~~~d~~--~~l~~~~r~Lkpg 133 (260)
T 1vl5_A 110 RIAAHHFPNPA--SFVSEAYRVLKKG 133 (260)
T ss_dssp ESCGGGCSCHH--HHHHHHHHHEEEE
T ss_pred hhhhHhcCCHH--HHHHHHHHHcCCC
Confidence 99999999987 9999999999996
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=148.75 Aligned_cols=90 Identities=20% Similarity=0.304 Sum_probs=80.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+.+|||||||+|.++..|+ +.+.+|++||+|+.|++.|+++ .+++|+++|+++++.++++||+|+|
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~-~~~~~v~gvD~s~~ml~~a~~~------------~~v~~~~~~~e~~~~~~~sfD~v~~ 105 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLA-EFFERVHAVDPGEAQIRQALRH------------PRVTYAVAPAEDTGLPPASVDVAIA 105 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHH-TTCSEEEEEESCHHHHHTCCCC------------TTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred CCCCEEEEcCCCCHHHHHHH-HhCCEEEEEeCcHHhhhhhhhc------------CCceeehhhhhhhcccCCcccEEEE
Confidence 45789999999999999999 7789999999999999877642 3789999999999877789999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..++||+. .+ ++++++.++||||
T Consensus 106 ~~~~h~~~-~~--~~~~e~~rvLkpg 128 (257)
T 4hg2_A 106 AQAMHWFD-LD--RFWAELRRVARPG 128 (257)
T ss_dssp CSCCTTCC-HH--HHHHHHHHHEEEE
T ss_pred eeehhHhh-HH--HHHHHHHHHcCCC
Confidence 99998874 55 7999999999997
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-17 Score=143.04 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=84.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|+++.. ..+++++++|+.+++.++++||+|++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~~~~~~fD~v~~ 122 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLS-RTGYKAVGVDISEVMIQKGKERGE---------GPDLSFIKGDLSSLPFENEQFEAIMA 122 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHTTTC---------BTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHH-HcCCeEEEEECCHHHHHHHHhhcc---------cCCceEEEcchhcCCCCCCCccEEEE
Confidence 46799999999999999999 557799999999999999999852 24789999999998766689999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+++|++++. .+++++.++|+||
T Consensus 123 ~~~l~~~~~~~--~~l~~~~~~L~pg 146 (242)
T 3l8d_A 123 INSLEWTEEPL--RALNEIKRVLKSD 146 (242)
T ss_dssp ESCTTSSSCHH--HHHHHHHHHEEEE
T ss_pred cChHhhccCHH--HHHHHHHHHhCCC
Confidence 99999998887 9999999999986
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6e-17 Score=136.89 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=83.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++. ...+++|+++|+.++ ...++||+|++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~-~~~~~v~~~D~s~~~~~~a~~~----------~~~~~~~~~~d~~~~-~~~~~~D~v~~ 113 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLS-GLADRVTALDGSAEMIAEAGRH----------GLDNVEFRQQDLFDW-TPDRQWDAVFF 113 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHH-HHSSEEEEEESCHHHHHHHGGG----------CCTTEEEEECCTTSC-CCSSCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHH-hcCCeEEEEeCCHHHHHHHHhc----------CCCCeEEEecccccC-CCCCceeEEEE
Confidence 46799999999999999999 4477999999999999999982 124789999999998 44579999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|++++++..+|+++.++|+||
T Consensus 114 ~~~l~~~~~~~~~~~l~~~~~~L~pg 139 (218)
T 3ou2_A 114 AHWLAHVPDDRFEAFWESVRSAVAPG 139 (218)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred echhhcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999997789999999999986
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-18 Score=143.97 Aligned_cols=92 Identities=22% Similarity=0.283 Sum_probs=82.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||||||+|.++..|+ +.+.+|+++|+|+.|++.|+++... +++|+++|++++. .+++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~~~~a~~~~~~----------~v~~~~~d~~~~~-~~~~fD~v~~ 109 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQ-EHFNDITCVEASEEAISHAQGRLKD----------GITYIHSRFEDAQ-LPRRYDNIVL 109 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHT-TTCSCEEEEESCHHHHHHHHHHSCS----------CEEEEESCGGGCC-CSSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHH-HhCCcEEEEeCCHHHHHHHHHhhhC----------CeEEEEccHHHcC-cCCcccEEEE
Confidence 46789999999999999999 6677999999999999999998631 6899999998884 4579999999
Q ss_pred hhHHhhcCchhHHHHHHHHH-hhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAK-VNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~-~~LkPG 262 (262)
..+++|++|++ .+|+++. ++|+||
T Consensus 110 ~~~l~~~~~~~--~~l~~~~~~~Lkpg 134 (250)
T 2p7i_A 110 THVLEHIDDPV--ALLKRINDDWLAEG 134 (250)
T ss_dssp ESCGGGCSSHH--HHHHHHHHTTEEEE
T ss_pred hhHHHhhcCHH--HHHHHHHHHhcCCC
Confidence 99999999987 9999999 999996
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.9e-17 Score=141.20 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=87.6
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++.... ...+++++.+|+.+++.++++||+|
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~fD~v 133 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAG-----LANRVTFSYADAMDLPFEDASFDAV 133 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTT-----CTTTEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcC-----CCcceEEEECccccCCCCCCCccEE
Confidence 34678999999999999999996567799999999999999999875421 1236899999999887666799999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++.+++|+++.+ .+|+++.++|+||
T Consensus 134 ~~~~~l~~~~~~~--~~l~~~~~~L~pg 159 (273)
T 3bus_A 134 WALESLHHMPDRG--RALREMARVLRPG 159 (273)
T ss_dssp EEESCTTTSSCHH--HHHHHHHTTEEEE
T ss_pred EEechhhhCCCHH--HHHHHHHHHcCCC
Confidence 9999999999887 9999999999996
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-17 Score=141.35 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=87.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||+|||+|.++..|+.....+|+++|+|+.|++.|++++... .+++|+++|+.+++.++++||+|
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~~~~~~~~fD~v 124 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN--------NKIIFEANDILTKEFPENNFDLI 124 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC--------TTEEEEECCTTTCCCCTTCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC--------CCeEEEECccccCCCCCCcEEEE
Confidence 4467899999999999999999555779999999999999999987531 47899999999987656899999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++.+++|+++++...+|+++.++|+||
T Consensus 125 ~~~~~l~~~~~~~~~~~l~~~~~~L~pg 152 (266)
T 3ujc_A 125 YSRDAILALSLENKNKLFQKCYKWLKPT 152 (266)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred eHHHHHHhcChHHHHHHHHHHHHHcCCC
Confidence 9999999997766679999999999996
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-17 Score=152.06 Aligned_cols=203 Identities=15% Similarity=0.158 Sum_probs=135.1
Q ss_pred CCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCCccCCHHHHHHHHhccccch----hhhhhHhHh---
Q 024811 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQ----QEKKTQWYR--- 107 (262)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~g~ef~s~~e~W~~~~~~~~~~----~~~~~~wy~--- 107 (262)
...++|+.+||.|++++.+++++++.. .+++.+.+.|.+..|.. +..++..+ +.. ..+ -++...|..
T Consensus 76 ~~~~~~~~~pk~~~~~~~~l~~~~~~~--~~~~~~~~~g~~~~~~~--~~~~~~~~-~~~-~~~~~~a~~~~~~~~~~~~ 149 (343)
T 2pjd_A 76 DCDTLIYYWPKNKPEAQFQLMNLLSLL--PVGTDIFVVGENRSGVR--SAEQMLAD-YAP-LNKVDSARRCGLYFGRLEK 149 (343)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHHTTS--CTTCEEEEEEEGGGTGG--GHHHHHTT-TSC-CEEECCCTTEEEEEEECCS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHHhC--CCCCEEEEEEecCCCHH--hHHHHHHH-hcC-cchhhhhhcceeEEeeccc
Confidence 467999999999999999999998853 23678889999999888 88777754 332 110 011111111
Q ss_pred ----hHHhhhhccch---hhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC
Q 024811 108 ----EGISYWEGVEA---SVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180 (262)
Q Consensus 108 ----~~~~yW~~~~~---~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~ 180 (262)
....||..... .+. ...|. ++...++....++...+. ..++.+|||+|||+|.++..++....
T Consensus 150 ~~~~~~~~~~~~y~~~~~~~~-~~~gv--f~~~~~d~~~~~ll~~l~-------~~~~~~VLDlGcG~G~~~~~la~~~~ 219 (343)
T 2pjd_A 150 QPVFDAEKFWGEYSVDGLTVK-TLPGV--FSRDGLDVGSQLLLSTLT-------PHTKGKVLDVGCGAGVLSVAFARHSP 219 (343)
T ss_dssp CCCCCGGGGCEEEEETTEEEE-ECTTC--TTSSSCCHHHHHHHHHSC-------TTCCSBCCBTTCTTSHHHHHHHHHCT
T ss_pred CCCCCchhhcceeeccceEEE-ecCCc--cCCCCCcHHHHHHHHhcC-------cCCCCeEEEecCccCHHHHHHHHHCC
Confidence 11233332211 111 11111 222223333444444442 11356899999999999999994432
Q ss_pred -CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhc---CchhHHHHHHHHH
Q 024811 181 -NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHL---TDDDFVSFFKRAK 256 (262)
Q Consensus 181 -~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hl---tD~el~~~l~~~~ 256 (262)
.+|+++|+|+.|++.|++++... ...++++++|+.++. .++||+|+++.++|+. +..+...+|+++.
T Consensus 220 ~~~v~~vD~s~~~l~~a~~~~~~~-------~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~ 290 (343)
T 2pjd_A 220 KIRLTLCDVSAPAVEASRATLAAN-------GVEGEVFASNVFSEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAV 290 (343)
T ss_dssp TCBCEEEESBHHHHHHHHHHHHHT-------TCCCEEEECSTTTTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHh-------CCCCEEEEccccccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHH
Confidence 38999999999999999998542 123678899998764 3689999999998862 3344558999999
Q ss_pred hhccCC
Q 024811 257 VNHSQT 262 (262)
Q Consensus 257 ~~LkPG 262 (262)
++|+||
T Consensus 291 ~~Lkpg 296 (343)
T 2pjd_A 291 RHLNSG 296 (343)
T ss_dssp GGEEEE
T ss_pred HhCCCC
Confidence 999996
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-17 Score=137.41 Aligned_cols=92 Identities=17% Similarity=0.281 Sum_probs=82.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++ ++.++++|+.+++ ..++||+|++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~------------~~~~~~~d~~~~~-~~~~fD~v~~ 108 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAML-AAGFDVDATDGSPELAAEASRRL------------GRPVRTMLFHQLD-AIDAYDAVWA 108 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHH------------TSCCEECCGGGCC-CCSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHH-HcCCeEEEECCCHHHHHHHHHhc------------CCceEEeeeccCC-CCCcEEEEEe
Confidence 57799999999999999999 55779999999999999999986 3567888888887 4579999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|+++++...+|+++.++|+||
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~Lkpg 134 (211)
T 3e23_A 109 HACLLHVPRDELADVLKLIWRALKPG 134 (211)
T ss_dssp CSCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999999777779999999999986
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=141.45 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=86.6
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..|+.....+|+++|+|+.|++.|++++.... ...+++|+++|+.++++++++||+|+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~fD~v~ 155 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAG-----LADNITVKYGSFLEIPCEDNSYDFIW 155 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHT-----CTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcC-----CCcceEEEEcCcccCCCCCCCEeEEE
Confidence 4578999999999999999995546689999999999999999875421 12468999999999876667999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..+++|+++.. .+|+++.++|+||
T Consensus 156 ~~~~l~~~~~~~--~~l~~~~~~Lkpg 180 (297)
T 2o57_A 156 SQDAFLHSPDKL--KVFQECARVLKPR 180 (297)
T ss_dssp EESCGGGCSCHH--HHHHHHHHHEEEE
T ss_pred ecchhhhcCCHH--HHHHHHHHHcCCC
Confidence 999999999966 9999999999996
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-16 Score=139.03 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=86.0
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||+|||+|.++..++...+.+|+++|+|+.|++.|++++.... ...+++++.+|+.+++ ++||+|
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~-----~~~~~~~~~~d~~~~~---~~fD~v 133 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSE-----NLRSKRVLLAGWEQFD---EPVDRI 133 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCC-----CCSCEEEEESCGGGCC---CCCSEE
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-----CCCCeEEEECChhhCC---CCeeEE
Confidence 44678999999999999999996666799999999999999999875421 2247899999998774 689999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++..+++|+++++...+|+++.++|+||
T Consensus 134 ~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 161 (287)
T 1kpg_A 134 VSIGAFEHFGHERYDAFFSLAHRLLPAD 161 (287)
T ss_dssp EEESCGGGTCTTTHHHHHHHHHHHSCTT
T ss_pred EEeCchhhcChHHHHHHHHHHHHhcCCC
Confidence 9999999997766669999999999997
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=134.76 Aligned_cols=104 Identities=19% Similarity=0.178 Sum_probs=86.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||+|||+|.++..|+ +.+ .+|+++|+|+.|++.|++++....-. .....+++|+++|+...+...++||+|
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLL-KDKSFEQITGVDVSYSVLERAKDRLKIDRLP-EMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHH-TSTTCCEEEEEESCHHHHHHHHHHHTGGGSC-HHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred CCCEEEEecCCCCHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHHHHhhccc-cccCcceEEEeCcccccccccCCCCEE
Confidence 46799999999999999999 555 58999999999999999987532100 000126899999997776555799999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|+.+++|++++++..+++++.++|+||
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 134 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRPQ 134 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999998889999999999997
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=148.50 Aligned_cols=212 Identities=13% Similarity=0.103 Sum_probs=137.5
Q ss_pred CCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCCccCCHHHHHHHHhccc---cchhhhhhHhHhhH-H
Q 024811 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED---GEQQEKKTQWYREG-I 110 (262)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~g~ef~s~~e~W~~~~~~~---~~~~~~~~~wy~~~-~ 110 (262)
...++|+.+||++++++..+++.++.- .++..+++.|.+..|.. +..++..+..+.. ..+.+....|.... .
T Consensus 100 ~~~~v~~~lpk~~~~l~~~L~~l~~~l--~~~~~i~~~g~~~~~~~--~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 175 (375)
T 4dcm_A 100 QPGVVLIKVPKTLALLEQQLRALRKVV--TSDTRIIAGAKARDIHT--STLELFEKVLGPTTTTLAWKKARLINCTFNEP 175 (375)
T ss_dssp SCSEEEEECCSCHHHHHHHHHHHHTTC--CTTSEEEEEEEGGGCCH--HHHHHHHHHTCCEEECCCBTTEEEEEECCCCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHhhC--CCCCEEEEEecccchHH--HHHHHHHhhcCccchhhhhceeEEEEEeCCCC
Confidence 567899999999999999999998853 24778889999988886 8888887765541 11111111121100 0
Q ss_pred --------hhhhccchhhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc-CC
Q 024811 111 --------SYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FN 181 (262)
Q Consensus 111 --------~yW~~~~~~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~-~~ 181 (262)
..|.-....+ .+.-.-+.++...++....++...+. ..++.+|||+|||+|.++..++... ..
T Consensus 176 ~~~~~~~~~~~~~~~~~~-~~~~~pg~Fs~~~~d~~~~~ll~~l~-------~~~~~~VLDlGcG~G~~s~~la~~~p~~ 247 (375)
T 4dcm_A 176 QLADAPQTVSWKLEGTDW-TIHNHANVFSRTGLDIGARFFMQHLP-------ENLEGEIVDLGCGNGVIGLTLLDKNPQA 247 (375)
T ss_dssp CCCCCCSCEEEEETTTTE-EEEECTTCTTCSSCCHHHHHHHHTCC-------CSCCSEEEEETCTTCHHHHHHHHHCTTC
T ss_pred CCCCCCCceEEEecCCce-EEEeCCCcccCCcccHHHHHHHHhCc-------ccCCCeEEEEeCcchHHHHHHHHHCCCC
Confidence 0111000000 00000122333344444455544443 1235799999999999999999543 56
Q ss_pred cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhh---cCchhHHHHHHHHHhh
Q 024811 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH---LTDDDFVSFFKRAKVN 258 (262)
Q Consensus 182 ~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~h---ltD~el~~~l~~~~~~ 258 (262)
+|++||+|+.|++.|++++....- ....+++|+.+|+.+..+ .++||+|+|+.++|+ +++....++|+++.+.
T Consensus 248 ~V~gvD~s~~al~~Ar~n~~~ngl---~~~~~v~~~~~D~~~~~~-~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~ 323 (375)
T 4dcm_A 248 KVVFVDESPMAVASSRLNVETNMP---EALDRCEFMINNALSGVE-PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRC 323 (375)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHCG---GGGGGEEEEECSTTTTCC-TTCEEEEEECCCC-------CCHHHHHHHHHHHH
T ss_pred EEEEEECcHHHHHHHHHHHHHcCC---CcCceEEEEechhhccCC-CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHh
Confidence 899999999999999998764210 011257889999988544 468999999998886 4444445799999999
Q ss_pred ccCC
Q 024811 259 HSQT 262 (262)
Q Consensus 259 LkPG 262 (262)
|+||
T Consensus 324 Lkpg 327 (375)
T 4dcm_A 324 LKIN 327 (375)
T ss_dssp EEEE
T ss_pred CCCC
Confidence 9986
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-16 Score=134.40 Aligned_cols=104 Identities=18% Similarity=0.112 Sum_probs=85.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||+|||+|.++..|+ +.+ .+|+++|+|+.|++.|++++....-. .....+++|+++|+...+...++||+|
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILL-KDSFFEQITGVDVSYRSLEIAQERLDRLRLP-RNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHH-HCTTCSEEEEEESCHHHHHHHHHHHTTCCCC-HHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred CCCEEEEeCCCCCHHHHHHH-hhCCCCEEEEEECCHHHHHHHHHHHHHhcCC-cccCcceEEEeCCcccccccCCCcCEE
Confidence 46799999999999999999 544 58999999999999999987532100 000126899999997766555789999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|+.+++|++++++..+++++.++|+||
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 134 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQPK 134 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999998789999999999997
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=135.72 Aligned_cols=96 Identities=13% Similarity=0.148 Sum_probs=85.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++.. ..+++|+++|+.++.+ .++||+|++
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~~-~~~fD~v~~ 120 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLA-PHCKRLTVIDVMPRAIGRACQRTKR--------WSHISWAATDILQFST-AELFDLIVV 120 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHG-GGEEEEEEEESCHHHHHHHHHHTTT--------CSSEEEEECCTTTCCC-SCCEEEEEE
T ss_pred CCCcEEEEcCCCCHHHHHHH-HcCCEEEEEECCHHHHHHHHHhccc--------CCCeEEEEcchhhCCC-CCCccEEEE
Confidence 46799999999999999999 5567999999999999999998753 2378999999999875 479999999
Q ss_pred hhHHhhcCch-hHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDD-DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~-el~~~l~~~~~~LkPG 262 (262)
+.+++|++++ ++..+|+++.++|+||
T Consensus 121 ~~~l~~~~~~~~~~~~l~~~~~~L~pg 147 (216)
T 3ofk_A 121 AEVLYYLEDMTQMRTAIDNMVKMLAPG 147 (216)
T ss_dssp ESCGGGSSSHHHHHHHHHHHHHTEEEE
T ss_pred ccHHHhCCCHHHHHHHHHHHHHHcCCC
Confidence 9999999985 5568999999999996
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-16 Score=138.31 Aligned_cols=100 Identities=12% Similarity=-0.025 Sum_probs=86.6
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||+|||+|.++..|+.....+|+++|+|+.|++.|++++.... ...+++|+++|+.++++ +++||+|
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~-~~~fD~V 107 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELG-----VSERVHFIHNDAAGYVA-NEKCDVA 107 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTT-----CTTTEEEEESCCTTCCC-SSCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-----CCcceEEEECChHhCCc-CCCCCEE
Confidence 34578999999999999999995556689999999999999999875421 12479999999999876 5799999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|..+++|+++.. .+|++++++|+||
T Consensus 108 ~~~~~~~~~~~~~--~~l~~~~r~Lkpg 133 (256)
T 1nkv_A 108 ACVGATWIAGGFA--GAEELLAQSLKPG 133 (256)
T ss_dssp EEESCGGGTSSSH--HHHHHHTTSEEEE
T ss_pred EECCChHhcCCHH--HHHHHHHHHcCCC
Confidence 9999999999877 9999999999996
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-16 Score=135.75 Aligned_cols=97 Identities=21% Similarity=0.365 Sum_probs=86.4
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..|+... ..+|+++|+|+.|++.|++++... .+++++++|+.++++. ++||+|+
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~~~~~-~~fD~v~ 114 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN--------LKVKYIEADYSKYDFE-EKYDMVV 114 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC--------TTEEEEESCTTTCCCC-SCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC--------CCEEEEeCchhccCCC-CCceEEE
Confidence 56899999999999999999443 558999999999999999987532 2789999999998776 7999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++|+++++...+|+++.++|+||
T Consensus 115 ~~~~l~~~~~~~~~~~l~~~~~~Lkpg 141 (234)
T 3dtn_A 115 SALSIHHLEDEDKKELYKRSYSILKES 141 (234)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred EeCccccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999998778999999999996
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=137.35 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=83.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC-----Cc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-----GR 230 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~-----~~ 230 (262)
.++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++.. .+++|+++|+.++.... ..
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la-~~~~~v~gvD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~ 124 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLS-QFFPRVIGLDVSKSALEIAAKENTA---------ANISYRLLDGLVPEQAAQIHSEIG 124 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHH-HHSSCEEEEESCHHHHHHHHHHSCC---------TTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCCeEEEEcCCCCHHHHHHH-HhCCCEEEEECCHHHHHHHHHhCcc---------cCceEEECcccccccccccccccC
Confidence 356799999999999999999 5566999999999999999998732 37899999999864321 24
Q ss_pred cchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
||+|+++.++||+++++...+|+++.++|+||
T Consensus 125 ~d~v~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 156 (245)
T 3ggd_A 125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQ 156 (245)
T ss_dssp SCEEEEESSSTTSCGGGHHHHHHHHHHHHTTT
T ss_pred ccEEEEcchhhcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999777779999999999997
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-16 Score=136.22 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=86.8
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||+|||+|.++..++ +.+.+|+++|+|+.|++.|++++... ...+++|+.+|+++++..+++||+|
T Consensus 19 ~~~~~~vLDiGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~fD~v 91 (239)
T 1xxl_A 19 CRAEHRVLDIGAGAGHTALAFS-PYVQECIGVDATKEMVEVASSFAQEK------GVENVRFQQGTAESLPFPDDSFDII 91 (239)
T ss_dssp CCTTCEEEEESCTTSHHHHHHG-GGSSEEEEEESCHHHHHHHHHHHHHH------TCCSEEEEECBTTBCCSCTTCEEEE
T ss_pred cCCCCEEEEEccCcCHHHHHHH-HhCCEEEEEECCHHHHHHHHHHHHHc------CCCCeEEEecccccCCCCCCcEEEE
Confidence 3467899999999999999999 66779999999999999999987542 1246899999999887666799999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++.+++|++|.+ .+|+++.++|+||
T Consensus 92 ~~~~~l~~~~~~~--~~l~~~~~~Lkpg 117 (239)
T 1xxl_A 92 TCRYAAHHFSDVR--KAVREVARVLKQD 117 (239)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEEE
T ss_pred EECCchhhccCHH--HHHHHHHHHcCCC
Confidence 9999999999877 9999999999996
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-16 Score=135.97 Aligned_cols=93 Identities=22% Similarity=0.312 Sum_probs=83.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++. +++|+++|+.+++. +++||+|+|
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~~-~~~fD~v~~ 116 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLA-DSFGTVEGLELSADMLAIARRRNP-----------DAVLHHGDMRDFSL-GRRFSAVTC 116 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHT-TTSSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTTCCC-SCCEEEEEE
T ss_pred CCCcEEEeCCcCCHHHHHHH-HcCCeEEEEECCHHHHHHHHhhCC-----------CCEEEECChHHCCc-cCCcCEEEE
Confidence 46799999999999999999 667899999999999999999852 67999999999876 479999999
Q ss_pred hh-HHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 237 QW-CIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~-vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
+. +++|+.+ +++..+|+++.++|+||
T Consensus 117 ~~~~l~~~~~~~~~~~~l~~~~~~L~pg 144 (263)
T 3pfg_A 117 MFSSIGHLAGQAELDAALERFAAHVLPD 144 (263)
T ss_dssp CTTGGGGSCHHHHHHHHHHHHHHTEEEE
T ss_pred cCchhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 98 9999976 45668999999999996
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=137.12 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=85.8
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||+|||+|.++..++...+.+|+++|+|+.|++.|++++.... ...+++++.+|+.+++ ++||+|
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~---~~fD~v 159 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASID-----TNRSRQVLLQGWEDFA---EPVDRI 159 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSC-----CSSCEEEEESCGGGCC---CCCSEE
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CCCceEEEECChHHCC---CCcCEE
Confidence 44678999999999999999995546799999999999999999875421 1246899999998773 689999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++..+++|+++++...+|+++.++|+||
T Consensus 160 ~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 187 (318)
T 2fk8_A 160 VSIEAFEHFGHENYDDFFKRCFNIMPAD 187 (318)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTT
T ss_pred EEeChHHhcCHHHHHHHHHHHHHhcCCC
Confidence 9999999998777779999999999997
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-16 Score=138.23 Aligned_cols=100 Identities=22% Similarity=0.252 Sum_probs=87.1
Q ss_pred CCCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
..++.+|||+|||+|.++..|+... ..+|+++|+|+.|++.|++++... ...+++|+..|+.++++++++||+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~~~~~fD~ 108 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN------GIKNVKFLQANIFSLPFEDSSFDH 108 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCGGGCCSCTTCEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEcccccCCCCCCCeeE
Confidence 3467899999999999999999543 458999999999999999987542 224789999999988766689999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+++.+++|++|++ .+++++.++|+||
T Consensus 109 v~~~~~l~~~~~~~--~~l~~~~~~L~pg 135 (276)
T 3mgg_A 109 IFVCFVLEHLQSPE--EALKSLKKVLKPG 135 (276)
T ss_dssp EEEESCGGGCSCHH--HHHHHHHHHEEEE
T ss_pred EEEechhhhcCCHH--HHHHHHHHHcCCC
Confidence 99999999999988 9999999999996
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=136.34 Aligned_cols=112 Identities=16% Similarity=0.170 Sum_probs=90.7
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEE
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~ 218 (262)
...+..++.. + +..++.+|||||||+|.++..|+...+.+|+++|+|+.|++.|++++.... ...+++++.
T Consensus 58 ~~~~~~~~~~-~---~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~~v~~~~ 128 (302)
T 3hem_A 58 YAKRKLALDK-L---NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVD-----SPRRKEVRI 128 (302)
T ss_dssp HHHHHHHHHT-T---CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSC-----CSSCEEEEE
T ss_pred HHHHHHHHHH-c---CCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-----CCCceEEEE
Confidence 3345555542 2 244678999999999999999996546889999999999999999976421 223689999
Q ss_pred cCCCCCCCCCCccchhhhhhHHhhcCch-------hHHHHHHHHHhhccCC
Q 024811 219 VPLQDFTPETGRYDVIWVQWCIGHLTDD-------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 219 ~d~~~~~~~~~~yDlI~s~~vl~hltD~-------el~~~l~~~~~~LkPG 262 (262)
+|+.++ +++||+|+++.+++|++|+ ++..+|+++.++|+||
T Consensus 129 ~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg 176 (302)
T 3hem_A 129 QGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD 176 (302)
T ss_dssp CCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT
T ss_pred CCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC
Confidence 999887 3689999999999999764 4568999999999997
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=136.94 Aligned_cols=91 Identities=16% Similarity=0.106 Sum_probs=81.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|+++. +++|+++|+++++.++++||+|+
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~~~~a~~~~------------~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALA-NQGLFVYAVEPSIVMRQQAVVHP------------QVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHH-TTTCEEEEECSCHHHHHSSCCCT------------TEEEECCCTTSCCSCTTCBSEEE
T ss_pred CCCCEEEEEcCcccHHHHHHH-hCCCEEEEEeCCHHHHHHHHhcc------------CCEEEECchhhCCCCCCCEeEEE
Confidence 357899999999999999999 56789999999999999887653 68999999999876668999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+.+++|++|.+ .+|+++.++|+ |
T Consensus 100 ~~~~l~~~~~~~--~~l~~~~~~Lk-g 123 (261)
T 3ege_A 100 SILAIHHFSHLE--KSFQEMQRIIR-D 123 (261)
T ss_dssp EESCGGGCSSHH--HHHHHHHHHBC-S
T ss_pred EcchHhhccCHH--HHHHHHHHHhC-C
Confidence 999999998877 99999999999 6
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=130.21 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=83.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++ +.+.+|+++|+|+.|++.|++++... ..+++++++|+.+++...++||+|++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~D~v~~ 109 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLE-DYGFEVVGVDISEDMIRKAREYAKSR-------ESNVEFIVGDARKLSFEDKTFDYVIF 109 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHT-------TCCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEEeccCCHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhc-------CCCceEEECchhcCCCCCCcEEEEEE
Confidence 46799999999999999999 66779999999999999999987532 24789999999987655579999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++++...++...+++++.++|+||
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~L~~g 135 (227)
T 1ve3_A 110 IDSIVHFEPLELNQVFKEVRRVLKPS 135 (227)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHEEEE
T ss_pred cCchHhCCHHHHHHHHHHHHHHcCCC
Confidence 99966666666669999999999986
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-16 Score=132.16 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=84.3
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhh
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~ 238 (262)
.+|||+|||+|.++..|+.....+|+++|+|+.|++.|++++.... ...+++++++|+.+++.++++||+|+++.
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 119 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADAN-----LNDRIQIVQGDVHNIPIEDNYADLIVSRG 119 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTT-----CTTTEEEEECBTTBCSSCTTCEEEEEEES
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhcc-----ccCceEEEEcCHHHCCCCcccccEEEECc
Confidence 4999999999999999995535589999999999999999976431 12478999999999876667999999999
Q ss_pred HHhhcCchhHHHHHHHHHhhccCC
Q 024811 239 CIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 239 vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++|+.+.+ .+|+++.++|+||
T Consensus 120 ~l~~~~~~~--~~l~~~~~~L~pg 141 (219)
T 3dlc_A 120 SVFFWEDVA--TAFREIYRILKSG 141 (219)
T ss_dssp CGGGCSCHH--HHHHHHHHHEEEE
T ss_pred hHhhccCHH--HHHHHHHHhCCCC
Confidence 999998877 9999999999996
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-16 Score=129.07 Aligned_cols=98 Identities=17% Similarity=0.123 Sum_probs=85.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++... ...+++++++|+.+++. .++||+|++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~-~~~~D~v~~ 103 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLA-ANGYDVDAWDKNAMSIANVERIKSIE------NLDNLHTRVVDLNNLTF-DRQYDFILS 103 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHH------TCTTEEEEECCGGGCCC-CCCEEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHHhC------CCCCcEEEEcchhhCCC-CCCceEEEE
Confidence 46799999999999999999 55779999999999999999987542 12368999999998866 579999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|+++++...+++++.++|+||
T Consensus 104 ~~~l~~~~~~~~~~~l~~~~~~L~~g 129 (199)
T 2xvm_A 104 TVVLMFLEAKTIPGLIANMQRCTKPG 129 (199)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHTEEEE
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999777779999999999986
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-16 Score=135.54 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=85.6
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++.. ...+++|+.+|+++++..+++||+|+
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~~d~~~~~~~~~~fD~v~ 109 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLI-ARGYRYIALDADAAMLEVFRQKIAG-------VDRKVQVVQADARAIPLPDESVHGVI 109 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHH-TTTCEEEEEESCHHHHHHHHHHTTT-------SCTTEEEEESCTTSCCSCTTCEEEEE
T ss_pred CCCCEEEEeCCcCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhhc-------cCCceEEEEcccccCCCCCCCeeEEE
Confidence 357899999999999999999 5578999999999999999998721 23578999999998876567899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.++||++|.+ .+++++.++|+||
T Consensus 110 ~~~~l~~~~~~~--~~l~~~~~~L~pg 134 (263)
T 2yqz_A 110 VVHLWHLVPDWP--KVLAEAIRVLKPG 134 (263)
T ss_dssp EESCGGGCTTHH--HHHHHHHHHEEEE
T ss_pred ECCchhhcCCHH--HHHHHHHHHCCCC
Confidence 999999999877 9999999999996
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=127.89 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=83.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++.. ..+++++.+|+.+++..+++||+|++
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--------~~~i~~~~~d~~~~~~~~~~fD~v~~ 113 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--------VPQLRWETMDVRKLDFPSASFDVVLE 113 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--------CTTCEEEECCTTSCCSCSSCEEEEEE
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--------CCCcEEEEcchhcCCCCCCcccEEEE
Confidence 5779999999999999999944334899999999999999998742 24789999999988655578999999
Q ss_pred hhHHhhcC-------------chhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLT-------------DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hlt-------------D~el~~~l~~~~~~LkPG 262 (262)
+.+++|+. ..+...+|+++.++|+||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 152 (215)
T 2pxx_A 114 KGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG 152 (215)
T ss_dssp ESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE
T ss_pred CcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC
Confidence 99998886 334568999999999986
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-16 Score=133.39 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=82.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..++ +.+. +|+++|+|+.|++.|+++... .+++++++|+.+++...++||+|+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~-~~~~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~fD~v~ 112 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAH-EHGASYVLGLDLSEKMLARARAAGPD---------TGITYERADLDKLHLPQDSFDLAY 112 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHH-HTTCSEEEEEESCHHHHHHHHHTSCS---------SSEEEEECCGGGCCCCTTCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHH-HCCCCeEEEEcCCHHHHHHHHHhccc---------CCceEEEcChhhccCCCCCceEEE
Confidence 46799999999999999999 4455 899999999999999998642 268999999988765557999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++|+++.. .+|+++.++|+||
T Consensus 113 ~~~~l~~~~~~~--~~l~~~~~~L~pg 137 (243)
T 3bkw_A 113 SSLALHYVEDVA--RLFRTVHQALSPG 137 (243)
T ss_dssp EESCGGGCSCHH--HHHHHHHHHEEEE
T ss_pred EeccccccchHH--HHHHHHHHhcCcC
Confidence 999999998876 9999999999986
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-16 Score=135.88 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=83.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+.....+|+++|+|+.|++.|++++. ..+++|+++|+.+++...++||+|++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~~~~~~fD~v~~ 114 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---------SPVVCYEQKAIEDIAIEPDAYNVVLS 114 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---------CTTEEEEECCGGGCCCCTTCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---------cCCeEEEEcchhhCCCCCCCeEEEEE
Confidence 578999999999999999994433399999999999999999874 24789999999988765689999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|+.+.. .+|+++.++|+||
T Consensus 115 ~~~l~~~~~~~--~~l~~~~~~Lkpg 138 (253)
T 3g5l_A 115 SLALHYIASFD--DICKKVYINLKSS 138 (253)
T ss_dssp ESCGGGCSCHH--HHHHHHHHHEEEE
T ss_pred chhhhhhhhHH--HHHHHHHHHcCCC
Confidence 99999998876 9999999999996
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-16 Score=134.40 Aligned_cols=93 Identities=20% Similarity=0.273 Sum_probs=82.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
.++.+|||+|||+|.++..|+... ..+|+++|+|+.|++.|+++. .+++|+.+|+++++ .+++||+|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~-~~~~fD~v 99 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----------PNTNFGKADLATWK-PAQKADLL 99 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----------TTSEEEECCTTTCC-CSSCEEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------CCcEEEECChhhcC-ccCCcCEE
Confidence 357799999999999999999443 668999999999999999873 26899999999987 45799999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++.+++|++|.. .+|+++.++|+||
T Consensus 100 ~~~~~l~~~~~~~--~~l~~~~~~L~pg 125 (259)
T 2p35_A 100 YANAVFQWVPDHL--AVLSQLMDQLESG 125 (259)
T ss_dssp EEESCGGGSTTHH--HHHHHHGGGEEEE
T ss_pred EEeCchhhCCCHH--HHHHHHHHhcCCC
Confidence 9999999998877 9999999999996
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=132.64 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=89.9
Q ss_pred HHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEE
Q 024811 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (262)
Q Consensus 138 s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~ 217 (262)
...++..++... ...++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++... ..++.++
T Consensus 26 ~~~~~~~~~~~~----~~~~~~~vLDlGcG~G~~~~~l~-~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~v~~~ 93 (252)
T 1wzn_A 26 EIDFVEEIFKED----AKREVRRVLDLACGTGIPTLELA-ERGYEVVGLDLHEEMLRVARRKAKER-------NLKIEFL 93 (252)
T ss_dssp HHHHHHHHHHHT----CSSCCCEEEEETCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHT-------TCCCEEE
T ss_pred HHHHHHHHHHHh----cccCCCEEEEeCCCCCHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHHhc-------CCceEEE
Confidence 345666666532 12346799999999999999999 55778999999999999999987542 2368999
Q ss_pred EcCCCCCCCCCCccchhhhhh-HHhhcCchhHHHHHHHHHhhccCC
Q 024811 218 CVPLQDFTPETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 218 ~~d~~~~~~~~~~yDlI~s~~-vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++|+.+++++ ++||+|++.+ +++|++.++...+|+++.++|+||
T Consensus 94 ~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 138 (252)
T 1wzn_A 94 QGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG 138 (252)
T ss_dssp ESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred ECChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCC
Confidence 9999988654 6899999874 567777777789999999999996
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-16 Score=139.54 Aligned_cols=99 Identities=11% Similarity=0.049 Sum_probs=76.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||+|||+|.++..|+ +.+.+|++||+|+.|++.|++++... ....++...+........++||+|
T Consensus 43 l~~g~~VLDlGcGtG~~a~~La-~~g~~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~~~~~fD~V 114 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKAL-ERGASVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKELAGHFDFV 114 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGGGTTCCSEE
T ss_pred CCCcCEEEEEeCcchHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccccccCCCccEE
Confidence 3457899999999999999999 66789999999999999999987531 112233222220001113689999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|+.++||++.++...+++++.++| ||
T Consensus 115 v~~~~l~~~~~~~~~~~l~~l~~lL-PG 141 (261)
T 3iv6_A 115 LNDRLINRFTTEEARRACLGMLSLV-GS 141 (261)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHH-TT
T ss_pred EEhhhhHhCCHHHHHHHHHHHHHhC-cC
Confidence 9999999999988889999999999 87
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-16 Score=135.63 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=85.1
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++.... ...+++|+++|+.+++.+.++||+|
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~fD~i 118 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSG-----LQNRVTGIVGSMDDLPFRNEELDLI 118 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTT-----CTTTEEEEECCTTSCCCCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcC-----CCcCcEEEEcChhhCCCCCCCEEEE
Confidence 34678999999999999999995434489999999999999999875421 2246999999999987656799999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|+.+++|+ +.+ .+|+++.++|+||
T Consensus 119 ~~~~~~~~~-~~~--~~l~~~~~~Lkpg 143 (267)
T 3kkz_A 119 WSEGAIYNI-GFE--RGLNEWRKYLKKG 143 (267)
T ss_dssp EESSCGGGT-CHH--HHHHHHGGGEEEE
T ss_pred EEcCCceec-CHH--HHHHHHHHHcCCC
Confidence 999999999 655 8999999999996
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.5e-16 Score=134.33 Aligned_cols=100 Identities=13% Similarity=0.123 Sum_probs=84.6
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++.... ...+++|+++|+.+++.++++||+|
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~fD~v 118 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKAN-----CADRVKGITGSMDNLPFQNEELDLI 118 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTT-----CTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcC-----CCCceEEEECChhhCCCCCCCEEEE
Confidence 34567999999999999999995544499999999999999999876431 1235899999999887666899999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|+.+++|+ +.+ .+|+++.++|+||
T Consensus 119 ~~~~~l~~~-~~~--~~l~~~~~~L~pg 143 (257)
T 3f4k_A 119 WSEGAIYNI-GFE--RGMNEWSKYLKKG 143 (257)
T ss_dssp EEESCSCCC-CHH--HHHHHHHTTEEEE
T ss_pred EecChHhhc-CHH--HHHHHHHHHcCCC
Confidence 999999999 555 8999999999996
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-16 Score=137.06 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=86.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++... ..+++++++|+.++.+ .++||+|++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~-~~g~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~-~~~fD~i~~ 190 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLS-LLGYDVTSWDHNENSIAFLNETKEKE-------NLNISTALYDINAANI-QENYDFIVS 190 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHT-------TCCEEEEECCGGGCCC-CSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHHHc-------CCceEEEEeccccccc-cCCccEEEE
Confidence 47799999999999999999 55779999999999999999987542 1278999999998876 579999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|++++++..+++++.++|+||
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~Lkpg 216 (286)
T 3m70_A 191 TVVFMFLNRERVPSIIKNMKEHTNVG 216 (286)
T ss_dssp CSSGGGSCGGGHHHHHHHHHHTEEEE
T ss_pred ccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998889999999999986
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.9e-16 Score=129.26 Aligned_cols=99 Identities=13% Similarity=0.065 Sum_probs=84.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++...+.+|+++|+|+.|++.|++++... ..+++++++|+.+++.++++||+|++
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v~~ 95 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN-------NFKLNISKGDIRKLPFKDESMSFVYS 95 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH-------TCCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-------CCceEEEECchhhCCCCCCceeEEEE
Confidence 46799999999999865555466779999999999999999987542 23688999999988765579999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|++.++...+++++.++|+||
T Consensus 96 ~~~l~~~~~~~~~~~l~~~~~~Lkpg 121 (209)
T 2p8j_A 96 YGTIFHMRKNDVKEAIDEIKRVLKPG 121 (209)
T ss_dssp CSCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred cChHHhCCHHHHHHHHHHHHHHcCCC
Confidence 99999997667779999999999996
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-16 Score=131.74 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=79.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+ ...+|+++|+|+.|++.|+++. .++.++++|+.+++..+++||+|++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v~~ 101 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----------PEATWVRAWGEALPFPGESFDVVLL 101 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----------TTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEcccccCCCCCCcEEEEEE
Confidence 5779999999999999887 2348999999999999999986 2578999999988766679999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+++|+++.+ .+++++.++|+||
T Consensus 102 ~~~l~~~~~~~--~~l~~~~~~L~pg 125 (211)
T 2gs9_A 102 FTTLEFVEDVE--RVLLEARRVLRPG 125 (211)
T ss_dssp ESCTTTCSCHH--HHHHHHHHHEEEE
T ss_pred cChhhhcCCHH--HHHHHHHHHcCCC
Confidence 99999999877 9999999999986
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-16 Score=132.27 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=85.2
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|++++... ...+++|+++|+.+++...++||+|
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~~~~~fD~v 110 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL------GLKNVEVLKSEENKIPLPDNTVDFI 110 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH------TCTTEEEEECBTTBCSSCSSCEEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEecccccCCCCCCCeeEE
Confidence 57799999999999999999543 258999999999999999987543 2236899999999887666789999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++.+++|+++.. .+++++.++|+||
T Consensus 111 ~~~~~l~~~~~~~--~~l~~~~~~Lkpg 136 (219)
T 3dh0_A 111 FMAFTFHELSEPL--KFLEELKRVAKPF 136 (219)
T ss_dssp EEESCGGGCSSHH--HHHHHHHHHEEEE
T ss_pred EeehhhhhcCCHH--HHHHHHHHHhCCC
Confidence 9999999998876 9999999999986
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.5e-16 Score=133.41 Aligned_cols=92 Identities=11% Similarity=0.073 Sum_probs=80.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~~~~~yDl 233 (262)
.++.+|||||||+|.++..|+ +.+.+|+++|+|+.|++.|+++ ++++++|+.++ +..+++||+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~~~~a~~~--------------~~~~~~d~~~~~~~~~~~~fD~ 104 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCK-EEGIESIGVDINEDMIKFCEGK--------------FNVVKSDAIEYLKSLPDKYLDG 104 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHH-HHTCCEEEECSCHHHHHHHHTT--------------SEEECSCHHHHHHTSCTTCBSE
T ss_pred cCCCeEEEEeCCCCHHHHHHH-hCCCcEEEEECCHHHHHHHHhh--------------cceeeccHHHHhhhcCCCCeeE
Confidence 356899999999999999999 4577899999999999999885 46777887764 334579999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|+.+++|++++++..+|+++.++|+||
T Consensus 105 i~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 133 (240)
T 3dli_A 105 VMISHFVEHLDPERLFELLSLCYSKMKYS 133 (240)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHBCTT
T ss_pred EEECCchhhCCcHHHHHHHHHHHHHcCCC
Confidence 99999999999998889999999999997
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=135.84 Aligned_cols=98 Identities=18% Similarity=0.234 Sum_probs=85.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++... ....+++|+++|+.++. ..+++||+|+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 141 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMA-ERGHQVILCDLSAQMIDRAKQAAEAK-----GVSDNMQFIHCAAQDVASHLETPVDLIL 141 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHC------CCGGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhc-----CCCcceEEEEcCHHHhhhhcCCCceEEE
Confidence 36799999999999999999 55779999999999999999987542 11257899999999886 3457999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++|+++++ .+|+++.++|+||
T Consensus 142 ~~~~l~~~~~~~--~~l~~~~~~Lkpg 166 (285)
T 4htf_A 142 FHAVLEWVADPR--SVLQTLWSVLRPG 166 (285)
T ss_dssp EESCGGGCSCHH--HHHHHHHHTEEEE
T ss_pred ECchhhcccCHH--HHHHHHHHHcCCC
Confidence 999999999887 9999999999996
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.60 E-value=6e-16 Score=132.72 Aligned_cols=93 Identities=16% Similarity=0.233 Sum_probs=80.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++. +++++++|+.++++ +++||+|+|
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~-~~~~~v~~~D~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~~-~~~~D~v~~ 106 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFT-KEFGDTAGLELSEDMLTHARKRLP-----------DATLHQGDMRDFRL-GRKFSAVVS 106 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHH-HHHSEEEEEESCHHHHHHHHHHCT-----------TCEEEECCTTTCCC-SSCEEEEEE
T ss_pred CCCeEEEecccCCHHHHHHH-HhCCcEEEEeCCHHHHHHHHHhCC-----------CCEEEECCHHHccc-CCCCcEEEE
Confidence 46799999999999999999 556699999999999999999752 57899999998866 479999996
Q ss_pred h-hHHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 237 Q-WCIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~-~vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
. .+++|+.+ ++...+|+++.++|+||
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~L~pg 134 (239)
T 3bxo_A 107 MFSSVGYLKTTEELGAAVASFAEHLEPG 134 (239)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHTEEEE
T ss_pred cCchHhhcCCHHHHHHHHHHHHHhcCCC
Confidence 5 49999976 56778999999999986
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-16 Score=138.61 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=90.3
Q ss_pred hHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 137 ~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
....+|..++.. .++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++...... ....++.+
T Consensus 44 ~~~~~l~~~l~~-------~~~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~ 113 (293)
T 3thr_A 44 EYKAWLLGLLRQ-------HGCHRVLDVACGTGVDSIMLV-EEGFSVTSVDASDKMLKYALKERWNRRKE--PAFDKWVI 113 (293)
T ss_dssp HHHHHHHHHHHH-------TTCCEEEETTCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTTS--HHHHTCEE
T ss_pred HHHHHHHHHhcc-------cCCCEEEEecCCCCHHHHHHH-HCCCeEEEEECCHHHHHHHHHhhhhcccc--cccceeeE
Confidence 334556665542 246799999999999999999 55779999999999999999876321110 01246788
Q ss_pred EEcCCCCCC---CCCCccchhhhh-hHHhhcCc-----hhHHHHHHHHHhhccCC
Q 024811 217 FCVPLQDFT---PETGRYDVIWVQ-WCIGHLTD-----DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 217 ~~~d~~~~~---~~~~~yDlI~s~-~vl~hltD-----~el~~~l~~~~~~LkPG 262 (262)
..+|+.+++ +..++||+|+|+ .+++|+++ ++...+|+++.++|+||
T Consensus 114 ~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkpg 168 (293)
T 3thr_A 114 EEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG 168 (293)
T ss_dssp EECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEE
T ss_pred eecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCC
Confidence 999988865 445799999998 89999999 55669999999999996
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.5e-16 Score=132.58 Aligned_cols=112 Identities=18% Similarity=0.261 Sum_probs=90.8
Q ss_pred hHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 137 ~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
....++..++... ..++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++... ..++++
T Consensus 22 ~~~~~~~~~l~~~-----~~~~~~vLdiG~G~G~~~~~l~-~~~~~~~~~D~s~~~~~~a~~~~~~~-------~~~~~~ 88 (246)
T 1y8c_A 22 KWSDFIIEKCVEN-----NLVFDDYLDLACGTGNLTENLC-PKFKNTWAVDLSQEMLSEAENKFRSQ-------GLKPRL 88 (246)
T ss_dssp HHHHHHHHHHHTT-----TCCTTEEEEETCTTSTTHHHHG-GGSSEEEEECSCHHHHHHHHHHHHHT-------TCCCEE
T ss_pred HHHHHHHHHHHHh-----CCCCCeEEEeCCCCCHHHHHHH-HCCCcEEEEECCHHHHHHHHHHHhhc-------CCCeEE
Confidence 3345566666532 1246799999999999999999 55778999999999999999987532 126899
Q ss_pred EEcCCCCCCCCCCccchhhhhh-HHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 217 FCVPLQDFTPETGRYDVIWVQW-CIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 217 ~~~d~~~~~~~~~~yDlI~s~~-vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
+++|+.+++.+ ++||+|+++. +++|+++ ++...+|+++.++|+||
T Consensus 89 ~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pg 135 (246)
T 1y8c_A 89 ACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135 (246)
T ss_dssp ECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred EecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999988665 7899999998 9999955 56679999999999986
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-16 Score=133.97 Aligned_cols=98 Identities=15% Similarity=0.028 Sum_probs=85.6
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
+.+|||+|||+|.++..|+ ..+.+|+++|+|+.|++.|++++.... ...+++|+++|+.++.+. ++||+|+++
T Consensus 67 ~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~-~~fD~v~~~ 139 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMA-SPERFVVGLDISESALAKANETYGSSP-----KAEYFSFVKEDVFTWRPT-ELFDLIFDY 139 (235)
T ss_dssp CEEEEEETCTTCHHHHHHC-BTTEEEEEECSCHHHHHHHHHHHTTSG-----GGGGEEEECCCTTTCCCS-SCEEEEEEE
T ss_pred CCCEEEeCCCCCHHHHHHH-hCCCeEEEEECCHHHHHHHHHHhhccC-----CCcceEEEECchhcCCCC-CCeeEEEEC
Confidence 4699999999999999998 667789999999999999999875421 124699999999998764 699999999
Q ss_pred hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 238 WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.+++|+++++...+|+++.++|+||
T Consensus 140 ~~l~~~~~~~~~~~l~~~~~~Lkpg 164 (235)
T 3lcc_A 140 VFFCAIEPEMRPAWAKSMYELLKPD 164 (235)
T ss_dssp SSTTTSCGGGHHHHHHHHHHHEEEE
T ss_pred hhhhcCCHHHHHHHHHHHHHHCCCC
Confidence 9999999777779999999999996
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=135.43 Aligned_cols=100 Identities=21% Similarity=0.268 Sum_probs=83.2
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
+.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++..... ....+++|+++|+.++++ +++||+|++.
T Consensus 83 ~~~vLDlGcG~G~~~~~l~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~~~v~~~~~d~~~~~~-~~~fD~v~~~ 157 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFL-DLGWEVTALELSTSVLAAFRKRLAEAPA---DVRDRCTLVQGDMSAFAL-DKRFGTVVIS 157 (299)
T ss_dssp CSCEEEETCTTTTTHHHHH-TTTCCEEEEESCHHHHHHHHHHHHTSCH---HHHTTEEEEECBTTBCCC-SCCEEEEEEC
T ss_pred CCcEEEEeccCCHHHHHHH-HcCCeEEEEECCHHHHHHHHHHHhhccc---ccccceEEEeCchhcCCc-CCCcCEEEEC
Confidence 4599999999999999999 5577899999999999999998754210 000468999999999876 4799998865
Q ss_pred -hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 238 -WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 -~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.+++|++++++..+|+++.++|+||
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~L~pg 183 (299)
T 3g2m_A 158 SGSINELDEADRRGLYASVREHLEPG 183 (299)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHEEEE
T ss_pred CcccccCCHHHHHHHHHHHHHHcCCC
Confidence 6788888777889999999999996
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=136.84 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=84.8
Q ss_pred CCceeeEeeccccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC------
Q 024811 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET------ 228 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~--~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~------ 228 (262)
++.+|||||||+|.++..|+.. .+.+|+++|+|+.|++.|++++.... ....+++|+++|+++++...
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~~~~ 111 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP----DTYKNVSFKISSSDDFKFLGADSVDK 111 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-----CCTTEEEEECCTTCCGGGCTTTTTS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc----CCCCceEEEEcCHHhCCccccccccC
Confidence 5789999999999999999953 36799999999999999999875420 12358999999999987654
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++||+|+++.++||+ +.. .+++++.++|+||
T Consensus 112 ~~fD~V~~~~~l~~~-~~~--~~l~~~~~~Lkpg 142 (299)
T 3g5t_A 112 QKIDMITAVECAHWF-DFE--KFQRSAYANLRKD 142 (299)
T ss_dssp SCEEEEEEESCGGGS-CHH--HHHHHHHHHEEEE
T ss_pred CCeeEEeHhhHHHHh-CHH--HHHHHHHHhcCCC
Confidence 699999999999999 665 9999999999996
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-15 Score=127.58 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=86.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++ ..+.+|+++|+|+.|++.|++++...... .....++++++.|+.+++...++||+|++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELA-SKGYSVTGIDINSEAIRLAETAARSPGLN-QKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHTTCCSCC-SSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHhcCCc-cccCcceEEEEecccccCCCCCceeEEEE
Confidence 47799999999999999999 55779999999999999999987542110 01123689999999988766679999999
Q ss_pred hhHHhhcCchh-HHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~e-l~~~l~~~~~~LkPG 262 (262)
+.+++|+++++ ...+++++.++|+||
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pg 134 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPG 134 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEE
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999865 568999999999986
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-15 Score=123.58 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=83.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++ ..+.+|+++|+|+.+++.+++++. ++.+++.|+.+++.+.++||+|++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~-~~~~~v~~~D~~~~~~~~a~~~~~-----------~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLS-KQGHDVLGTDLDPILIDYAKQDFP-----------EARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHH-HTTCEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTTSCCCCCCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHH-HCCCcEEEEcCCHHHHHHHHHhCC-----------CCcEEEcccccCCCCCCceeEEEE
Confidence 46799999999999999999 557799999999999999999762 578999999987655578999999
Q ss_pred h-hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 Q-WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~-~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+ .+++|+++++...+++++.++|+||
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~ 140 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGAD 140 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCC
Confidence 8 6899998887789999999999986
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-15 Score=134.19 Aligned_cols=91 Identities=14% Similarity=0.209 Sum_probs=82.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++ .++.|+.+|++++++ +++||+|++
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~-~~~fD~v~~ 123 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIA-QSGAEVLGTDNAATMIEKARQNY-----------PHLHFDVADARNFRV-DKPLDAVFS 123 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHC-----------TTSCEEECCTTTCCC-SSCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHH-hCCCeEEEEECCHHHHHHHHhhC-----------CCCEEEECChhhCCc-CCCcCEEEE
Confidence 56799999999999999999 46779999999999999999875 267899999999876 479999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|++|++ .+|+++.++|+||
T Consensus 124 ~~~l~~~~d~~--~~l~~~~~~Lkpg 147 (279)
T 3ccf_A 124 NAMLHWVKEPE--AAIASIHQALKSG 147 (279)
T ss_dssp ESCGGGCSCHH--HHHHHHHHHEEEE
T ss_pred cchhhhCcCHH--HHHHHHHHhcCCC
Confidence 99999999887 9999999999996
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-15 Score=133.24 Aligned_cols=97 Identities=14% Similarity=0.199 Sum_probs=84.9
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..|+... ..+|+++|+|+.|++.|++++... ..+++|++.|+.+++++ ++||+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~~v~~~~~d~~~~~~~-~~fD~ 92 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-------PYDSEFLEGDATEIELN-DKYDI 92 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS-------SSEEEEEESCTTTCCCS-SCEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc-------CCceEEEEcchhhcCcC-CCeeE
Confidence 457899999999999999999432 358999999999999999987542 23799999999998764 69999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+++.+++|++|.+ .+++++.++|+||
T Consensus 93 v~~~~~l~~~~~~~--~~l~~~~~~Lkpg 119 (284)
T 3gu3_A 93 AICHAFLLHMTTPE--TMLQKMIHSVKKG 119 (284)
T ss_dssp EEEESCGGGCSSHH--HHHHHHHHTEEEE
T ss_pred EEECChhhcCCCHH--HHHHHHHHHcCCC
Confidence 99999999999987 9999999999996
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-16 Score=137.05 Aligned_cols=97 Identities=12% Similarity=0.008 Sum_probs=79.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yDlI 234 (262)
++.+|||||||+|..+..+++....+|++||+|+.|++.|+++.... ..+++++.+|+++.. .++++||.|
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~FD~i 132 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDGI 132 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhC-------CCceEEEeehHHhhcccccccCCceE
Confidence 57899999999999999998444468999999999999999987542 346888888877642 234678887
Q ss_pred h-----hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 W-----VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~-----s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+ +..+++|+.+.+ .+++++.++||||
T Consensus 133 ~~D~~~~~~~~~~~~~~~--~~~~e~~rvLkPG 163 (236)
T 3orh_A 133 LYDTYPLSEETWHTHQFN--FIKNHAFRLLKPG 163 (236)
T ss_dssp EECCCCCBGGGTTTHHHH--HHHHTHHHHEEEE
T ss_pred EEeeeecccchhhhcchh--hhhhhhhheeCCC
Confidence 5 466788888877 9999999999997
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-15 Score=129.57 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=82.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++ +. .+|+++|+|+.|++.|++++... ..+++++++|+.+++.+ ++||+|++
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~-~~-~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~-~~fD~v~~ 102 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLA-DH-YEVTGVDLSEEMLEIAQEKAMET-------NRHVDFWVQDMRELELP-EPVDAITI 102 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHT-TT-SEEEEEESCHHHHHHHHHHHHHT-------TCCCEEEECCGGGCCCS-SCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHh-hC-CeEEEEECCHHHHHHHHHhhhhc-------CCceEEEEcChhhcCCC-CCcCEEEE
Confidence 45799999999999999999 54 78999999999999999987532 23689999999888655 78999999
Q ss_pred hh-HHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 237 QW-CIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~-vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
.. +++|+.+ ++...+++++.++|+||
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~L~pg 130 (243)
T 3d2l_A 103 LCDSLNYLQTEADVKQTFDSAARLLTDG 130 (243)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHHEEEE
T ss_pred eCCchhhcCCHHHHHHHHHHHHHhcCCC
Confidence 87 9999954 56678999999999996
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-15 Score=135.29 Aligned_cols=100 Identities=12% Similarity=0.052 Sum_probs=85.6
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||+|||+|.++..|+...+.+|+++|+|+.|++.|++++.... ...+++|+++|+.+++...++||+|
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~fD~V 189 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELR-----IDDHVRSRVCNMLDTPFDKGAVTAS 189 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT-----CTTTEEEEECCTTSCCCCTTCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCceEEEECChhcCCCCCCCEeEE
Confidence 34678999999999999999995547789999999999999999876431 1237999999999987656799999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++.+++|+ +.. .+|+++.++|+||
T Consensus 190 ~~~~~l~~~-~~~--~~l~~~~~~Lkpg 214 (312)
T 3vc1_A 190 WNNESTMYV-DLH--DLFSEHSRFLKVG 214 (312)
T ss_dssp EEESCGGGS-CHH--HHHHHHHHHEEEE
T ss_pred EECCchhhC-CHH--HHHHHHHHHcCCC
Confidence 999999999 444 8999999999996
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-15 Score=125.60 Aligned_cols=95 Identities=18% Similarity=0.076 Sum_probs=80.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++ +|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++... ..+++++++|+.+++.+.++||+|++
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLA-SLGYEVTAVDQSSVGLAKAKQLAQEK-------GVKITTVQSNLADFDIVADAWEGIVS 100 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHH-------TCCEEEECCBTTTBSCCTTTCSEEEE
T ss_pred CC-CEEEECCCCCHhHHHHH-hCCCeEEEEECCHHHHHHHHHHHHhc-------CCceEEEEcChhhcCCCcCCccEEEE
Confidence 35 99999999999999999 55779999999999999999987542 12689999999988655579999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+ +.|++.++...+++++.++|+||
T Consensus 101 ~--~~~~~~~~~~~~l~~~~~~L~pg 124 (202)
T 2kw5_A 101 I--FCHLPSSLRQQLYPKVYQGLKPG 124 (202)
T ss_dssp E--CCCCCHHHHHHHHHHHHTTCCSS
T ss_pred E--hhcCCHHHHHHHHHHHHHhcCCC
Confidence 5 45776667779999999999997
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-15 Score=123.03 Aligned_cols=100 Identities=9% Similarity=0.025 Sum_probs=76.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI 234 (262)
.++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++... ...+++|++.+.+++. ..+++||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la-~~~~~v~~vD~s~~~l~~a~~~~~~~------~~~~v~~~~~~~~~l~~~~~~~fD~v 93 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLA-GLSKKVYAFDVQEQALGKTSQRLSDL------GIENTELILDGHENLDHYVREPIRAA 93 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHH-TTSSEEEEEESCHHHHHHHHHHHHHH------TCCCEEEEESCGGGGGGTCCSCEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHH-HhCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCcHHHHHhhccCCcCEE
Confidence 357899999999999999999 55889999999999999999998643 1247899998877742 124689999
Q ss_pred hhhhH-Hhh-----c-CchhHHHHHHHHHhhccCC
Q 024811 235 WVQWC-IGH-----L-TDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~v-l~h-----l-tD~el~~~l~~~~~~LkPG 262 (262)
+++.. +++ . ...+...+|+++.+.|+||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 128 (185)
T 3mti_A 94 IFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG 128 (185)
T ss_dssp EEEEC-----------CHHHHHHHHHHHHHHEEEE
T ss_pred EEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC
Confidence 98842 222 1 1134457899999999996
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.2e-15 Score=129.58 Aligned_cols=101 Identities=14% Similarity=-0.018 Sum_probs=83.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++.... ...++.|+++|+.+.+. .+++||+|+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~fD~v~ 138 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK-----RRFKVFFRAQDSYGRHMDLGKEFDVIS 138 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSC-----CSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCccEEEEECCccccccCCCCCcCEEE
Confidence 577999999999999999885444589999999999999999875421 12468999999998754 357899999
Q ss_pred hhhHHhh--cCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGH--LTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~h--ltD~el~~~l~~~~~~LkPG 262 (262)
++.++|| .+.++...+|+++.++|+||
T Consensus 139 ~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg 167 (298)
T 1ri5_A 139 SQFSFHYAFSTSESLDIAQRNIARHLRPG 167 (298)
T ss_dssp EESCGGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred ECchhhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 9999998 44556669999999999996
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-15 Score=135.93 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=74.4
Q ss_pred CCceeeEeeccccHHHHHHHH---hcCCc----EEEEeCCHHHHHHHHhhcccccccCCCCCcceE--EEEcCCCCCC--
Q 024811 157 QHLVALDCGSGIGRITKNLLI---RYFNE----VDLLEPVSHFLDAARESLAPENHMAPDMHKATN--FFCVPLQDFT-- 225 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~---~~~~~----V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~--f~~~d~~~~~-- 225 (262)
++.+|||||||+|.++..++. ..++. ++++|+|+.|++.|++++.... ...+++ +.+.+.+++.
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~ 126 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS-----NLENVKFAWHKETSSEYQSR 126 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS-----SCTTEEEEEECSCHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc-----CCCcceEEEEecchhhhhhh
Confidence 467999999999987765442 22232 3999999999999999874311 112444 4456665543
Q ss_pred ----CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 226 ----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 ----~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++||+|+|+.++||++|++ ++|++++++||||
T Consensus 127 ~~~~~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkpg 165 (292)
T 2aot_A 127 MLEKKELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTN 165 (292)
T ss_dssp HHTTTCCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEE
T ss_pred hccccCCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCCC
Confidence 2347899999999999999988 9999999999997
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=147.11 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=88.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcC---CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~---~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
++.+|||+|||+|.++..|+ +.+ .+|++||+|+.|++.|++++............+++|+++|+.++++..++||+
T Consensus 721 ~g~rVLDVGCGTG~lai~LA-r~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLL-DYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHT-SSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred CCCEEEEECCCCCHHHHHHH-HhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 47799999999999999999 655 68999999999999999976432100011235799999999998877789999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++..+++|+++++...+++++.++|+||
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG 828 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK 828 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 99999999999998788999999999998
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-15 Score=123.10 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=77.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++ +.+.+|+++|+|+.+++.++++. .+++++..| .+...++||+|++
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~-----------~~v~~~~~d---~~~~~~~~D~v~~ 81 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLL-EFATKLYCIDINVIALKEVKEKF-----------DSVITLSDP---KEIPDNSVDFILF 81 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHH-TTEEEEEEECSCHHHHHHHHHHC-----------TTSEEESSG---GGSCTTCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHH-hhcCeEEEEeCCHHHHHHHHHhC-----------CCcEEEeCC---CCCCCCceEEEEE
Confidence 57799999999999999999 55459999999999999999982 268899888 3334478999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|+++.+ .+++++.+.|+||
T Consensus 82 ~~~l~~~~~~~--~~l~~~~~~L~pg 105 (170)
T 3i9f_A 82 ANSFHDMDDKQ--HVISEVKRILKDD 105 (170)
T ss_dssp ESCSTTCSCHH--HHHHHHHHHEEEE
T ss_pred ccchhcccCHH--HHHHHHHHhcCCC
Confidence 99999998877 9999999999986
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-15 Score=130.68 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=78.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~~~~~yDlI 234 (262)
++.+|||+|||+|.++..|+.....+|+++|+|+.|++.|+++.... ..++.++++|++++ +..+++||+|
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~fD~V 132 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDGI 132 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhc-------CCCeEEEecCHHHhhcccCCCceEEE
Confidence 57899999999999999998323448999999999999999987542 24789999999887 5555799999
Q ss_pred hh-hhHH--hhcCchhHHHHHHHHHhhccCC
Q 024811 235 WV-QWCI--GHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s-~~vl--~hltD~el~~~l~~~~~~LkPG 262 (262)
++ .+++ ++....+...+++++.++||||
T Consensus 133 ~~d~~~~~~~~~~~~~~~~~l~~~~r~Lkpg 163 (236)
T 1zx0_A 133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPG 163 (236)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred EECCcccchhhhhhhhHHHHHHHHHHhcCCC
Confidence 99 5543 3333334447899999999996
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-15 Score=136.86 Aligned_cols=105 Identities=14% Similarity=0.113 Sum_probs=85.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhccccccc--CCCCCcceEEEEcCCCCC------C
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHM--APDMHKATNFFCVPLQDF------T 225 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~--~~~~~~~v~f~~~d~~~~------~ 225 (262)
.++.+|||+|||+|.++..|+... ..+|+++|+|+.|++.|++++...... +.....+++|+.+|++++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 357899999999999999999553 348999999999999999987432000 000124799999999986 5
Q ss_pred CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 ~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++++||+|+++.+++|++|.. .+|+++.++|+||
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkpg 196 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKL--ALFKEIHRVLRDG 196 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEE
T ss_pred CCCCCEEEEEEccchhcCCCHH--HHHHHHHHHcCCC
Confidence 5557999999999999999877 9999999999996
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.4e-15 Score=131.61 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=82.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhccccccc-----------------------------
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHM----------------------------- 206 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~----------------------------- 206 (262)
++.+|||||||+|.++..|+... ..+|++||+|+.|++.|++++......
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 46799999999999999999553 468999999999999999987542100
Q ss_pred -----------------------CCCCCcceEEEEcCCCCCC-----CCCCccchhhhhhHHhhc----CchhHHHHHHH
Q 024811 207 -----------------------APDMHKATNFFCVPLQDFT-----PETGRYDVIWVQWCIGHL----TDDDFVSFFKR 254 (262)
Q Consensus 207 -----------------------~~~~~~~v~f~~~d~~~~~-----~~~~~yDlI~s~~vl~hl----tD~el~~~l~~ 254 (262)
......+++|+++|+.+.. ...++||+|+|..+++|+ .++++..+|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 0001147999999998654 234799999999999888 56677799999
Q ss_pred HHhhccCC
Q 024811 255 AKVNHSQT 262 (262)
Q Consensus 255 ~~~~LkPG 262 (262)
+.++|+||
T Consensus 206 ~~~~LkpG 213 (292)
T 3g07_A 206 IYRHLRPG 213 (292)
T ss_dssp HHHHEEEE
T ss_pred HHHHhCCC
Confidence 99999996
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=126.19 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=77.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|+++.. . .++++|+.+++..+++||+|++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~l~~a~~~~~-----------~-~~~~~d~~~~~~~~~~fD~v~~ 120 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQ-ERGFEVVLVDPSKEMLEVAREKGV-----------K-NVVEAKAEDLPFPSGAFEAVLA 120 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHH-TTTCEEEEEESCHHHHHHHHHHTC-----------S-CEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHH-HcCCeEEEEeCCHHHHHHHHhhcC-----------C-CEEECcHHHCCCCCCCEEEEEE
Confidence 46799999999999999999 557789999999999999999752 1 2889999988765679999999
Q ss_pred hhHHhhc-CchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHL-TDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hl-tD~el~~~l~~~~~~LkPG 262 (262)
..++.|+ ++.. .+|+++.++|+||
T Consensus 121 ~~~~~~~~~~~~--~~l~~~~~~Lkpg 145 (260)
T 2avn_A 121 LGDVLSYVENKD--KAFSEIRRVLVPD 145 (260)
T ss_dssp CSSHHHHCSCHH--HHHHHHHHHEEEE
T ss_pred cchhhhccccHH--HHHHHHHHHcCCC
Confidence 8866666 5644 9999999999996
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.5e-15 Score=133.46 Aligned_cols=106 Identities=9% Similarity=0.063 Sum_probs=77.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC------C--CCCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD------F--TPET 228 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~------~--~~~~ 228 (262)
++.+|||||||+|..+..++...+.+|++||+|+.||+.|+++............-.++|.+.|+.. + ....
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 3679999999999877766645567899999999999999998653210000000136788888822 1 1223
Q ss_pred CccchhhhhhHHhhc-CchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHL-TDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hl-tD~el~~~l~~~~~~LkPG 262 (262)
++||+|+|++++||+ .+++...+|++++++|+||
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpG 162 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASG 162 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCC
Confidence 689999999999986 3345668999999999997
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.50 E-value=5e-15 Score=130.87 Aligned_cols=107 Identities=12% Similarity=0.035 Sum_probs=79.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccccccc--------------CC---------CCCc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM--------------AP---------DMHK 212 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~--------------~~---------~~~~ 212 (262)
.++.+|||||||+|.++..++...+.+|+++|.|+.|++.|++++...... +. ....
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 356799999999999888777454568999999999999999876321000 00 0001
Q ss_pred ceE-EEEcCCCCCCC----CCCccchhhhhhHHhhcC-c-hhHHHHHHHHHhhccCC
Q 024811 213 ATN-FFCVPLQDFTP----ETGRYDVIWVQWCIGHLT-D-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 213 ~v~-f~~~d~~~~~~----~~~~yDlI~s~~vl~hlt-D-~el~~~l~~~~~~LkPG 262 (262)
++. ++.+|+.+..| ..++||+|+|++++||+. + +++..++++++++||||
T Consensus 134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPG 190 (263)
T 2a14_A 134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG 190 (263)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCC
Confidence 233 88999987432 135899999999999974 3 56779999999999997
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.7e-15 Score=127.62 Aligned_cols=105 Identities=12% Similarity=0.061 Sum_probs=81.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhhccccccc--------------C-CC--------CCc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHM--------------A-PD--------MHK 212 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~l~~a~~~--------------~-~~--------~~~ 212 (262)
++.+|||+|||+|.++..++ ..+. +|+++|+|+.|++.|++++...... + .. ...
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSA-CESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTG-GGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHh-hcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 46799999999999999998 5454 8999999999999999987532100 0 00 001
Q ss_pred ce-EEEEcCCCCCCC-CC---CccchhhhhhHHhhcCch--hHHHHHHHHHhhccCC
Q 024811 213 AT-NFFCVPLQDFTP-ET---GRYDVIWVQWCIGHLTDD--DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 213 ~v-~f~~~d~~~~~~-~~---~~yDlI~s~~vl~hltD~--el~~~l~~~~~~LkPG 262 (262)
++ .++.+|+.+..+ .+ ++||+|+++.+++|+++. +...+|+++.++|+||
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg 191 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPG 191 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCC
Confidence 26 899999988754 33 689999999999977643 5669999999999996
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.7e-15 Score=131.39 Aligned_cols=101 Identities=12% Similarity=-0.044 Sum_probs=84.5
Q ss_pred CCCceeeEeeccccHHHHHHHH-h-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLI-R-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~-~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..|+. . ...+|+++|+|+.|++.|++++.... ...+++|+++|+.+++++ ++||+
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~-~~fD~ 190 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA-----LAGQITLHRQDAWKLDTR-EGYDL 190 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST-----TGGGEEEEECCGGGCCCC-SCEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC-----CCCceEEEECchhcCCcc-CCeEE
Confidence 3578999999999999999851 2 24589999999999999999986421 123589999999998766 89999
Q ss_pred hhhhhHHhhcCchhH-HHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDF-VSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el-~~~l~~~~~~LkPG 262 (262)
|+++.+++|+++++. ..+++++.++|+||
T Consensus 191 v~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 220 (305)
T 3ocj_A 191 LTSNGLNIYEPDDARVTELYRRFWQALKPG 220 (305)
T ss_dssp EECCSSGGGCCCHHHHHHHHHHHHHHEEEE
T ss_pred EEECChhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999988763 35999999999996
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-14 Score=120.86 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=78.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~~~~~yDlI 234 (262)
++.+|||+|||+|.++..++.. +.+|+++|+|+.|++.++++. .+++.+|+.++ +..+++||+|
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~-------------~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL-------------DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS-------------SEEEESCTTTCCCCSCTTCEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC-------------CcEEEcchhhcCCCCCCCccCEE
Confidence 4679999999999999999944 789999999999999999864 26788898763 3334789999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++.+++|+++++ .+++++.++|+||
T Consensus 98 ~~~~~l~~~~~~~--~~l~~~~~~L~~g 123 (230)
T 3cc8_A 98 IFGDVLEHLFDPW--AVIEKVKPYIKQN 123 (230)
T ss_dssp EEESCGGGSSCHH--HHHHHTGGGEEEE
T ss_pred EECChhhhcCCHH--HHHHHHHHHcCCC
Confidence 9999999999987 9999999999986
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-14 Score=123.28 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=75.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC---CC-CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TP-ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~---~~-~~~~yD 232 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|+++. ++.++..|+.++ .. ...+||
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~------------~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALA-DRGIEAVGVDGDRTLVDAARAAG------------AGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHH-TTTCEEEEEESCHHHHHHHHHTC------------SSCEEECCHHHHHTTCSCCCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHHH-HCCCEEEEEcCCHHHHHHHHHhc------------ccccchhhHHhhcccccccCCCcc
Confidence 46899999999999999999 55779999999999999999871 456777777665 22 224699
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|+++.+++ ..+.. .+++++.++|+||
T Consensus 119 ~v~~~~~l~-~~~~~--~~l~~~~~~L~pg 145 (227)
T 3e8s_A 119 LICANFALL-HQDII--ELLSAMRTLLVPG 145 (227)
T ss_dssp EEEEESCCC-SSCCH--HHHHHHHHTEEEE
T ss_pred EEEECchhh-hhhHH--HHHHHHHHHhCCC
Confidence 999999988 66666 9999999999986
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-15 Score=130.33 Aligned_cols=97 Identities=14% Similarity=0.046 Sum_probs=82.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++.... ...+++|+++|+.++.+ .++||+|++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la-~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~d~~~~~~-~~~~D~v~~ 150 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFA-LTGMRVIAIDIDPVKIALARNNAEVYG-----IADKIEFICGDFLLLAS-FLKADVVFL 150 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTT-----CGGGEEEEESCHHHHGG-GCCCSEEEE
T ss_pred CCCEEEECccccCHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHHcC-----CCcCeEEEECChHHhcc-cCCCCEEEE
Confidence 47799999999999999999 567899999999999999999986421 11479999999998864 479999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|+.+.+ ..+.++.++|+||
T Consensus 151 ~~~~~~~~~~~--~~~~~~~~~L~pg 174 (241)
T 3gdh_A 151 SPPWGGPDYAT--AETFDIRTMMSPD 174 (241)
T ss_dssp CCCCSSGGGGG--SSSBCTTTSCSSC
T ss_pred CCCcCCcchhh--hHHHHHHhhcCCc
Confidence 99999988876 5777888888886
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-14 Score=128.46 Aligned_cols=106 Identities=10% Similarity=0.078 Sum_probs=76.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccC-----------CCC-------------Cc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA-----------PDM-------------HK 212 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~-----------~~~-------------~~ 212 (262)
++.+|||||||+|..+..++...+.+|+++|+|+.|++.|++++....... ... ..
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 467999999999996554443346799999999999999998764210000 000 01
Q ss_pred ceEEEEcCCCC-CCC-----CCCccchhhhhhHHhhcCch--hHHHHHHHHHhhccCC
Q 024811 213 ATNFFCVPLQD-FTP-----ETGRYDVIWVQWCIGHLTDD--DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 213 ~v~f~~~d~~~-~~~-----~~~~yDlI~s~~vl~hltD~--el~~~l~~~~~~LkPG 262 (262)
.+.++.+|+.+ .++ ++++||+|+|+++++|+.+. +...+|+++.++||||
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpG 208 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG 208 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 24677788887 321 23569999999999996643 5669999999999997
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-14 Score=124.56 Aligned_cols=101 Identities=13% Similarity=0.042 Sum_probs=80.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHH------HHHHHHhhcccccccCCCCCcceEEEEcC-C--CC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSH------FLDAARESLAPENHMAPDMHKATNFFCVP-L--QD 223 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~------mld~Ar~~l~~a~~~~~~~~~~v~f~~~d-~--~~ 223 (262)
..++.+|||||||+|.++..++...+ .+|+++|+|+. |++.|++++... ....+++|+.+| + ..
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~ 115 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG-----PLGDRLTVHFNTNLSDDL 115 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS-----TTGGGEEEECSCCTTTCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc-----CCCCceEEEECChhhhcc
Confidence 34678999999999999999995433 68999999998 999999987542 112478999998 3 33
Q ss_pred CCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 224 ~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.+..+++||+|+|+.+++|+++++ .+++.++.+++||
T Consensus 116 ~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~g 152 (275)
T 3bkx_A 116 GPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVC 152 (275)
T ss_dssp GGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTC
T ss_pred CCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCC
Confidence 333447899999999999999987 6888888888865
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-14 Score=121.18 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=80.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~yDlI 234 (262)
++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++... ...+++|+++|+.++.+ ..++||+|
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~fD~i 117 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEAL------GLSGATLRRGAVAAVVAAGTTSPVDLV 117 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHH------TCSCEEEEESCHHHHHHHCCSSCCSEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc------CCCceEEEEccHHHHHhhccCCCccEE
Confidence 46799999999999999888554568999999999999999998643 12478999999988632 24689999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHh--hccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKV--NHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~--~LkPG 262 (262)
+++.+++|. .++...++..+.+ +|+||
T Consensus 118 ~~~~p~~~~-~~~~~~~l~~~~~~~~L~pg 146 (189)
T 3p9n_A 118 LADPPYNVD-SADVDAILAALGTNGWTREG 146 (189)
T ss_dssp EECCCTTSC-HHHHHHHHHHHHHSSSCCTT
T ss_pred EECCCCCcc-hhhHHHHHHHHHhcCccCCC
Confidence 999886664 2344589999999 99997
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-14 Score=122.08 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=75.8
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
+.+|||+|||+|.++..++ .. +++|+|+.|++.++++ +++++++|+.+++...++||+|++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~-~~----~~vD~s~~~~~~a~~~-------------~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLK-IK----IGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFDFALMV 109 (219)
T ss_dssp SSCEEEETCTTSTTHHHHT-CC----EEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHH-HH----hccCCCHHHHHHHHhc-------------CCEEEEcccccCCCCCCCeeEEEEc
Confidence 6789999999999999988 43 8999999999999985 3678899998886655789999999
Q ss_pred hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 238 WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.+++|+++++ .+|+++.++|+||
T Consensus 110 ~~l~~~~~~~--~~l~~~~~~L~pg 132 (219)
T 1vlm_A 110 TTICFVDDPE--RALKEAYRILKKG 132 (219)
T ss_dssp SCGGGSSCHH--HHHHHHHHHEEEE
T ss_pred chHhhccCHH--HHHHHHHHHcCCC
Confidence 9999998877 9999999999986
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-14 Score=120.99 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=73.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCC-CCCCC-CCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DFTPE-TGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~-~~~~~-~~~yDlI 234 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|+++. .+++|+++|+. .++.. +++||+|
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~~~fD~v 115 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFG-PQAARWAAYDFSPELLKLARANA-----------PHADVYEWNGKGELPAGLGAPFGLI 115 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHG-GGSSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHH-HcCCEEEEEECCHHHHHHHHHhC-----------CCceEEEcchhhccCCcCCCCEEEE
Confidence 57799999999999999999 55779999999999999999983 26899999994 44444 5799999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|+ .+.. .+|+++.++|+||
T Consensus 116 ~~~------~~~~--~~l~~~~~~Lkpg 135 (226)
T 3m33_A 116 VSR------RGPT--SVILRLPELAAPD 135 (226)
T ss_dssp EEE------SCCS--GGGGGHHHHEEEE
T ss_pred EeC------CCHH--HHHHHHHHHcCCC
Confidence 997 3555 8999999999996
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=127.84 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=84.3
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI 234 (262)
...+|||||||+|.++..|++.. ..+|+++|+ +.|++.|++++... ....+++|+.+|+.+.. |-++.||+|
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~p~~~D~v 252 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGL-----SGSERIHGHGANLLDRDVPFPTGFDAV 252 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTC-----TTGGGEEEEECCCCSSSCCCCCCCSEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhc-----CcccceEEEEccccccCCCCCCCcCEE
Confidence 46799999999999999999443 347999999 99999999987542 11247999999999863 212689999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++||++|++...+|++++++|+||
T Consensus 253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pg 280 (363)
T 3dp7_A 253 WMSQFLDCFSEEEVISILTRVAQSIGKD 280 (363)
T ss_dssp EEESCSTTSCHHHHHHHHHHHHHHCCTT
T ss_pred EEechhhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999889999999999997
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-14 Score=142.41 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=72.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~~~~~yDlI 234 (262)
++.+|||||||+|.++..|+ +.+.+|++||+|+.+|+.|+...... ...+++|.+++++++ ..++++||+|
T Consensus 66 ~~~~vLDvGCG~G~~~~~la-~~ga~V~giD~~~~~i~~a~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~v 138 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLA-SKGATIVGIDFQQENINVCRALAEEN------PDFAAEFRVGRIEEVIAALEEGEFDLA 138 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTS------TTSEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred CCCeEEEECCCCcHHHHHHH-hCCCEEEEECCCHHHHHHHHHHHHhc------CCCceEEEECCHHHHhhhccCCCccEE
Confidence 46799999999999999999 77889999999999999999986532 224789999999887 2334789999
Q ss_pred hhhhHHhhcCchh
Q 024811 235 WVQWCIGHLTDDD 247 (262)
Q Consensus 235 ~s~~vl~hltD~e 247 (262)
+|..+|+|++|++
T Consensus 139 ~~~e~~ehv~~~~ 151 (569)
T 4azs_A 139 IGLSVFHHIVHLH 151 (569)
T ss_dssp EEESCHHHHHHHH
T ss_pred EECcchhcCCCHH
Confidence 9999999999976
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.1e-14 Score=126.01 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=83.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccccccc-CCCCCcceEEEEcCCCCCC----C--CCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFT----P--ETG 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~-~~~~~~~v~f~~~d~~~~~----~--~~~ 229 (262)
++.+|||+|||+|.++..++.....+|+++|+|+.|++.|+++....... ......+++|+++|+++.. . ..+
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 46799999999999999999544678999999999999999987532100 0001236899999998874 2 235
Q ss_pred ccchhhhhhHHhhc-Cc-hhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHL-TD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hl-tD-~el~~~l~~~~~~LkPG 262 (262)
+||+|+|+.++||+ .+ ++...+|+++.++|+||
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg 148 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPG 148 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEE
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCC
Confidence 89999999999998 44 45669999999999996
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=116.03 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=78.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..++ +.+ .+|+++|+|+.|++.|++++... ...+++++++|+.+..+..++||+
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la-~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~D~ 111 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEAS-NLMPNGRIFALERNPQYLGFIRDNLKKF------VARNVTLVEAFAPEGLDDLPDPDR 111 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHH-HHCTTSEEEEEECCHHHHHHHHHHHHHH------TCTTEEEEECCTTTTCTTSCCCSE
T ss_pred CCCCEEEEECCCCCHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEeCChhhhhhcCCCCCE
Confidence 457899999999999999999 445 68999999999999999987543 124789999999766444468999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++..+++ + ...+++++.+.|+||
T Consensus 112 i~~~~~~~---~--~~~~l~~~~~~Lkpg 135 (204)
T 3e05_A 112 VFIGGSGG---M--LEEIIDAVDRRLKSE 135 (204)
T ss_dssp EEESCCTT---C--HHHHHHHHHHHCCTT
T ss_pred EEECCCCc---C--HHHHHHHHHHhcCCC
Confidence 99987665 3 448999999999997
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=113.93 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=80.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcc--eEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA--TNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~--v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.|++++... ...+ ++++++|+.+..+ .++||+|
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~------~~~~~~~~~~~~d~~~~~~-~~~~D~v 123 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLN------NLDNYDIRVVHSDLYENVK-DRKYNKI 123 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHT------TCTTSCEEEEECSTTTTCT-TSCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHc------CCCccceEEEECchhcccc-cCCceEE
Confidence 5679999999999999999944 789999999999999999987542 1233 8999999988644 4689999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++.+++|. ..+...+++++.++|+||
T Consensus 124 ~~~~~~~~~-~~~~~~~l~~~~~~L~~g 150 (194)
T 1dus_A 124 ITNPPIRAG-KEVLHRIIEEGKELLKDN 150 (194)
T ss_dssp EECCCSTTC-HHHHHHHHHHHHHHEEEE
T ss_pred EECCCcccc-hhHHHHHHHHHHHHcCCC
Confidence 999887762 334458999999999986
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=122.75 Aligned_cols=96 Identities=18% Similarity=0.083 Sum_probs=80.3
Q ss_pred CceeeEeeccc---cHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-------
Q 024811 158 HLVALDCGSGI---GRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (262)
Q Consensus 158 ~~~VLDlGcGt---G~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~------- 225 (262)
..+|||||||+ |+++..+. +. ..+|++||+|+.|++.|++++.. ..+++|+++|+.+..
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~-~~~p~~~v~~vD~sp~~l~~Ar~~~~~--------~~~v~~~~~D~~~~~~~~~~~~ 148 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQ-SVNPDARVVYVDIDPMVLTHGRALLAK--------DPNTAVFTADVRDPEYILNHPD 148 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHH-HHCTTCEEEEEESSHHHHHHHHHHHTT--------CTTEEEEECCTTCHHHHHHSHH
T ss_pred CCEEEEECCCCCCCChHHHHHH-HhCCCCEEEEEECChHHHHHHHHhcCC--------CCCeEEEEeeCCCchhhhccch
Confidence 46899999999 99887776 43 35899999999999999998742 247899999997631
Q ss_pred ----CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 226 ----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 ----~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.+..+||+|+++.++||++|.+...+|+++.++|+||
T Consensus 149 ~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pG 189 (274)
T 2qe6_A 149 VRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPG 189 (274)
T ss_dssp HHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTT
T ss_pred hhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCC
Confidence 1114799999999999999977779999999999997
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-13 Score=111.29 Aligned_cols=95 Identities=14% Similarity=0.036 Sum_probs=74.9
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC-Cccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~-~~yDl 233 (262)
.++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|++++.... ...++ +++.|..+.-+.. ++||+
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~-~~~~d~~~~~~~~~~~~D~ 97 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG-----VSDRI-AVQQGAPRAFDDVPDNPDV 97 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT-----CTTSE-EEECCTTGGGGGCCSCCSE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC-----CCCCE-EEecchHhhhhccCCCCCE
Confidence 357799999999999999999442 4689999999999999999875421 12257 7888885532322 68999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+++.+++| . .+++++.+.|+||
T Consensus 98 i~~~~~~~~----~--~~l~~~~~~L~~g 120 (178)
T 3hm2_A 98 IFIGGGLTA----P--GVFAAAWKRLPVG 120 (178)
T ss_dssp EEECC-TTC----T--THHHHHHHTCCTT
T ss_pred EEECCcccH----H--HHHHHHHHhcCCC
Confidence 999999988 3 7999999999997
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-14 Score=118.19 Aligned_cols=92 Identities=15% Similarity=0.030 Sum_probs=77.8
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..|+ +.+.+|+++|+|+.+++.|++++... ...+++++.+|+.+..+..++||+|+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la-~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~D~i~ 148 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILA-HLVQHVCSVERIKGLQWQARRRLKNL------DLHNVSTRHGDGWQGWQARAPFDAII 148 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHH-HHSSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHH-HhCCEEEEEecCHHHHHHHHHHHHHc------CCCceEEEECCcccCCccCCCccEEE
Confidence 457899999999999999999 45889999999999999999998643 22478999999987655557999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++|+.+ .+.+.|+||
T Consensus 149 ~~~~~~~~~~--------~~~~~L~pg 167 (210)
T 3lbf_A 149 VTAAPPEIPT--------ALMTQLDEG 167 (210)
T ss_dssp ESSBCSSCCT--------HHHHTEEEE
T ss_pred EccchhhhhH--------HHHHhcccC
Confidence 9999999986 367888875
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-13 Score=124.08 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=82.2
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
+..+|||+|||+|.++..++... ..+++++|+ +.+++.|++++.... ...+++|..+|+.+..| ..||+|+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~p--~~~D~v~ 240 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG-----LSGRAQVVVGSFFDPLP--AGAGGYV 240 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT-----CTTTEEEEECCTTSCCC--CSCSEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC-----cCcCeEEecCCCCCCCC--CCCcEEE
Confidence 45799999999999999999443 236899999 999999999875421 22579999999974323 3799999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++||++|++..++|++++++|+||
T Consensus 241 ~~~vlh~~~~~~~~~~l~~~~~~L~pg 267 (332)
T 3i53_A 241 LSAVLHDWDDLSAVAILRRCAEAAGSG 267 (332)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHTTT
T ss_pred EehhhccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999998889999999999997
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=125.07 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=83.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+++....+|++||+|+ |++.|++++... ....+++++.+|+++++.+ ++||+|+|
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-----~l~~~v~~~~~d~~~~~~~-~~~D~Ivs 122 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSN-----NLTDRIVVIPGKVEEVSLP-EQVDIIIS 122 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHT-----TCTTTEEEEESCTTTCCCS-SCEEEEEE
T ss_pred CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHc-----CCCCcEEEEEcchhhCCCC-CceeEEEE
Confidence 5779999999999999999954345899999996 999999887542 1224799999999998654 68999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++++|+.+++...++.++++.|+||
T Consensus 123 ~~~~~~~~~~~~~~~l~~~~~~Lkpg 148 (348)
T 2y1w_A 123 EPMGYMLFNERMLESYLHAKKYLKPS 148 (348)
T ss_dssp CCCBTTBTTTSHHHHHHHGGGGEEEE
T ss_pred eCchhcCChHHHHHHHHHHHhhcCCC
Confidence 99999999888778889999999986
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-13 Score=130.30 Aligned_cols=134 Identities=11% Similarity=0.011 Sum_probs=97.0
Q ss_pred cccCCCCCCcccchhh-HHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhh
Q 024811 122 GVLGGFGNVNEVDIKG-SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (262)
Q Consensus 122 gvlgGy~~is~~di~~-s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~ 199 (262)
..|.+|..++..-+.. ...++..++... ...++.+|||||||+|.++..++..... +|++||.|+.|++.|+++
T Consensus 141 ~~L~~Ye~Fs~~vYGEt~~~~i~~il~~l----~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n 216 (438)
T 3uwp_A 141 EKLNNYEPFSPEVYGETSFDLVAQMIDEI----KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETM 216 (438)
T ss_dssp GGSCCCSSSCGGGGGGTHHHHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHH
T ss_pred HHhcCcccCCCcccCCCCHHHHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 4566788777766643 455666666521 2456889999999999999999955444 599999999999999987
Q ss_pred ccccccc---CCCCCcceEEEEcCCCCCCCCC--CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 200 LAPENHM---APDMHKATNFFCVPLQDFTPET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 200 l~~a~~~---~~~~~~~v~f~~~d~~~~~~~~--~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+...+.+ ......+++|+++|+.+.+... ..||+|+++.++ | .+++...|.++.+.||||
T Consensus 217 ~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F--~pdl~~aL~Ei~RvLKPG 281 (438)
T 3uwp_A 217 DREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-F--GPEVDHQLKERFANMKEG 281 (438)
T ss_dssp HHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-C--CHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEcccc-c--CchHHHHHHHHHHcCCCC
Confidence 6421100 0001247999999999875432 379999998764 3 355568899999999998
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-13 Score=122.87 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=84.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
.+..+|||+|||+|.++..++... ..+++++|+| .+++.|++++.... ...+++|+.+|+.+.+++ ..||+|
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~-~~~D~v 236 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG-----VASRYHTIAGSAFEVDYG-NDYDLV 236 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT-----CGGGEEEEESCTTTSCCC-SCEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC-----CCcceEEEecccccCCCC-CCCcEE
Confidence 356799999999999999999543 3479999999 99999999875421 123699999999886544 359999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++++++||+++++...+|+++.++|+||
T Consensus 237 ~~~~~l~~~~~~~~~~~l~~~~~~L~pg 264 (335)
T 2r3s_A 237 LLPNFLHHFDVATCEQLLRKIKTALAVE 264 (335)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred EEcchhccCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999998889999999999986
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-13 Score=114.18 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=78.5
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yDl 233 (262)
++.+|||+|||+|.++..++... ..+|++||+|+.|++.|++++... ...++.|+++|+.++. ...++||+
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~D~ 114 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV------GVPNIKLLWVDGSDLTDYFEDGEIDR 114 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH------CCSSEEEEECCSSCGGGTSCTTCCSE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc------CCCCEEEEeCCHHHHHhhcCCCCCCE
Confidence 36689999999999999999543 358999999999999999987543 1247999999999865 34468999
Q ss_pred hhhhhHHhhcCch------hHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDD------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~------el~~~l~~~~~~LkPG 262 (262)
|+++++..+.... ....+++++.++|+||
T Consensus 115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 149 (214)
T 1yzh_A 115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN 149 (214)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred EEEECCCCccccchhhhccCCHHHHHHHHHHcCCC
Confidence 9999764332211 1237999999999997
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-13 Score=124.61 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=83.4
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yDlI 234 (262)
+.+|||||||+|.++..++... ..+++++|+ +.+++.|++++.... ...+++|+.+|+.+.+ ++ +.||+|
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~~~-~~~D~v 252 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD-----LGGRVEFFEKNLLDARNFEG-GAADVV 252 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT-----CGGGEEEEECCTTCGGGGTT-CCEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC-----CCCceEEEeCCcccCcccCC-CCccEE
Confidence 6799999999999999999443 247899999 889999999875421 2246999999999875 43 579999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++++++||++|++...+|++++++|+||
T Consensus 253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pg 280 (352)
T 3mcz_A 253 MLNDCLHYFDAREAREVIGHAAGLVKPG 280 (352)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred EEecccccCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999998889999999999996
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-13 Score=116.20 Aligned_cols=99 Identities=16% Similarity=0.093 Sum_probs=76.7
Q ss_pred CCceeeEeecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcG-tG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
++.+|||+||| +|.++..++.....+|+++|+|+.|++.|++++... ..+++++++|+..+.+ .+++||+|
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~fD~I 127 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERN-------NSNVRLVKSNGGIIKGVVEGTFDVI 127 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHT-------TCCCEEEECSSCSSTTTCCSCEEEE
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHh-------CCCcEEEeCCchhhhhcccCceeEE
Confidence 57899999999 999999999443778999999999999999998642 1268999999654432 23789999
Q ss_pred hhhhHHhhcCchh-----------------HHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDD-----------------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~e-----------------l~~~l~~~~~~LkPG 262 (262)
+++.++++..+.+ ...+++++.++|+||
T Consensus 128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 172 (230)
T 3evz_A 128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG 172 (230)
T ss_dssp EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE
T ss_pred EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC
Confidence 9998776655422 257999999999986
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-13 Score=115.22 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=75.2
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCC--ccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG--RYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~--~yDl 233 (262)
++.+|||+|||+|.++..|+... ..+|++||+|+.|++.+.++...... .....+++|+++|++++++..+ .+|+
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~--~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPA--KGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGG--GTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhh--hcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 57899999999999999999543 46899999999999964322211000 1123479999999999866433 3444
Q ss_pred hhhhhHH--hhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCI--GHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl--~hltD~el~~~l~~~~~~LkPG 262 (262)
+++...+ ||++|+. .+|+++.++||||
T Consensus 105 ~~~~~~~~~~~~~~~~--~~l~~~~~~Lkpg 133 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSP--EMLRGMAAVCRPG 133 (218)
T ss_dssp ESCCHHHHHHHHTSSS--HHHHHHHHTEEEE
T ss_pred EccchhhhhhhhccHH--HHHHHHHHHcCCC
Confidence 4444455 4999988 9999999999996
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.8e-14 Score=118.99 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=76.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCC--cceEEEEcCCCCCCCC--CCc-c
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH--KATNFFCVPLQDFTPE--TGR-Y 231 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~--~~v~f~~~d~~~~~~~--~~~-y 231 (262)
++.+|||+|||+|.++..++...+.+|++||+|+.|++.|++++... .. .+++|+++|+.++.+. .++ |
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~~~~~~v~~~~~d~~~~~~~~~~~~~f 126 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTL------KCSSEQAEVINQSSLDFLKQPQNQPHF 126 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT------TCCTTTEEEECSCHHHHTTSCCSSCCE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHh------CCCccceEEEECCHHHHHHhhccCCCC
Confidence 36799999999999999988555568999999999999999998642 12 4789999998776432 368 9
Q ss_pred chhhhhhHHhhcCchhHHHHHHHH--HhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRA--KVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~--~~~LkPG 262 (262)
|+|+++.+++ ..+. ..+++.+ .++|+||
T Consensus 127 D~I~~~~~~~-~~~~--~~~l~~~~~~~~Lkpg 156 (201)
T 2ift_A 127 DVVFLDPPFH-FNLA--EQAISLLCENNWLKPN 156 (201)
T ss_dssp EEEEECCCSS-SCHH--HHHHHHHHHTTCEEEE
T ss_pred CEEEECCCCC-CccH--HHHHHHHHhcCccCCC
Confidence 9999998743 3333 3788888 5679886
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.40 E-value=5e-13 Score=114.11 Aligned_cols=93 Identities=8% Similarity=0.026 Sum_probs=76.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCc-ceEEEEcCCCCCCCCCCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~-~v~f~~~d~~~~~~~~~~yDlI 234 (262)
.++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.|++++... ... +++++++|+.+..+....||+|
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~------g~~~~v~~~~~d~~~~~~~~~~~D~v 126 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTY------GLSPRMRAVQGTAPAALADLPLPEAV 126 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEESCTTGGGTTSCCCSEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc------CCCCCEEEEeCchhhhcccCCCCCEE
Confidence 35789999999999999999944 889999999999999999987542 123 7899999999843333589999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++...+ +.. +++++.+.|+||
T Consensus 127 ~~~~~~------~~~-~l~~~~~~Lkpg 147 (204)
T 3njr_A 127 FIGGGG------SQA-LYDRLWEWLAPG 147 (204)
T ss_dssp EECSCC------CHH-HHHHHHHHSCTT
T ss_pred EECCcc------cHH-HHHHHHHhcCCC
Confidence 987633 233 999999999997
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-13 Score=114.14 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=77.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++... ...+++++++|+.++.+ ++||+|++
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~--~~fD~i~~ 131 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALN------GIYDIALQKTSLLADVD--GKFDLIVA 131 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT------TCCCCEEEESSTTTTCC--SCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEeccccccCC--CCceEEEE
Confidence 56799999999999999999433458999999999999999987642 12248999999988643 68999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|+ ..+++++.++|+||
T Consensus 132 ~~~~~~~-----~~~l~~~~~~L~~g 152 (205)
T 3grz_A 132 NILAEIL-----LDLIPQLDSHLNED 152 (205)
T ss_dssp ESCHHHH-----HHHGGGSGGGEEEE
T ss_pred CCcHHHH-----HHHHHHHHHhcCCC
Confidence 9888774 48899999999986
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6e-13 Score=123.35 Aligned_cols=99 Identities=21% Similarity=0.280 Sum_probs=83.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
.+..+|||+|||+|.++..|++.. ..+++++|+ +.+++.|++++.... ...+++|+.+|+.+..| ..||+|
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-----l~~~v~~~~~d~~~~~p--~~~D~v 272 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG-----LADRCEILPGDFFETIP--DGADVY 272 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT-----CTTTEEEEECCTTTCCC--SSCSEE
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC-----cCCceEEeccCCCCCCC--CCceEE
Confidence 356899999999999999999442 237899999 999999999875421 23479999999984333 379999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++||++|++..++|++++++|+||
T Consensus 273 ~~~~vlh~~~d~~~~~~L~~~~~~L~pg 300 (369)
T 3gwz_A 273 LIKHVLHDWDDDDVVRILRRIATAMKPD 300 (369)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTTCCTT
T ss_pred EhhhhhccCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999889999999999997
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-13 Score=123.50 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=78.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+++....+|+++|+|+ |++.|++++... ....+++++.+|+++++.+.++||+|+|
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~D~Ivs 137 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLN-----KLEDTITLIKGKIEEVHLPVEKVDVIIS 137 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHT-----TCTTTEEEEESCTTTSCCSCSCEEEEEE
T ss_pred CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHc-----CCCCcEEEEEeeHHHhcCCCCcEEEEEE
Confidence 5779999999999999999944345899999997 999999987542 1124789999999998765579999999
Q ss_pred hhH---HhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWC---IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~v---l~hltD~el~~~l~~~~~~LkPG 262 (262)
.++ +.|..+ +..++.++.++|+||
T Consensus 138 ~~~~~~l~~~~~--~~~~l~~~~~~Lkpg 164 (340)
T 2fyt_A 138 EWMGYFLLFESM--LDSVLYAKNKYLAKG 164 (340)
T ss_dssp CCCBTTBTTTCH--HHHHHHHHHHHEEEE
T ss_pred cCchhhccCHHH--HHHHHHHHHhhcCCC
Confidence 874 444443 448999999999986
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.2e-13 Score=122.34 Aligned_cols=95 Identities=16% Similarity=0.096 Sum_probs=77.5
Q ss_pred CCCCceeeEeeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
..++.+|||||||+|.++..++.+ .+.+|++||+|+.|++.|+++++... ..+++|+++|+.+++ +++||+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~g------l~~v~~v~gDa~~l~--d~~FDv 191 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG------VDGVNVITGDETVID--GLEFDV 191 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHT------CCSEEEEESCGGGGG--GCCCSE
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcC------CCCeEEEECchhhCC--CCCcCE
Confidence 457899999999999877555434 46799999999999999999986531 257999999999874 478999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++... .++.+ ++++++.+.|+||
T Consensus 192 V~~~a~---~~d~~--~~l~el~r~LkPG 215 (298)
T 3fpf_A 192 LMVAAL---AEPKR--RVFRNIHRYVDTE 215 (298)
T ss_dssp EEECTT---CSCHH--HHHHHHHHHCCTT
T ss_pred EEECCC---ccCHH--HHHHHHHHHcCCC
Confidence 998643 45555 9999999999997
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.7e-13 Score=122.08 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=83.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
.++.+|||||||+|.++..|+... ..+++++|+ +.|++.|++++.... ...+++|+.+|+.+.+++ .+|+|
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~--~~D~v 260 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG-----VADRMRGIAVDIYKESYP--EADAV 260 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT-----CTTTEEEEECCTTTSCCC--CCSEE
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC-----CCCCEEEEeCccccCCCC--CCCEE
Confidence 356799999999999999999442 238999999 999999999875421 123599999999987543 35999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++||++|++...+|++++++|+||
T Consensus 261 ~~~~vlh~~~d~~~~~~l~~~~~~L~pg 288 (359)
T 1x19_A 261 LFCRILYSANEQLSTIMCKKAFDAMRSG 288 (359)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTTCCTT
T ss_pred EEechhccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999988889999999999997
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-13 Score=121.34 Aligned_cols=105 Identities=14% Similarity=0.110 Sum_probs=80.4
Q ss_pred CceeeEeeccccH----HHHHHHHhcC-----CcEEEEeCCHHHHHHHHhhcccccc----------------cCCCC--
Q 024811 158 HLVALDCGSGIGR----ITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPENH----------------MAPDM-- 210 (262)
Q Consensus 158 ~~~VLDlGcGtG~----lt~~La~~~~-----~~V~~VD~s~~mld~Ar~~l~~a~~----------------~~~~~-- 210 (262)
+.+|||+|||||. ++..|+.... .+|+++|+|+.||+.|++++-.... .....
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 5799999999998 6666763312 3799999999999999997521100 00000
Q ss_pred -------CcceEEEEcCCCCCCCC-CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 211 -------HKATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 211 -------~~~v~f~~~d~~~~~~~-~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..++.|.+.|+.+.+++ .++||+|+|.++++|++++...++++++.+.|+||
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pg 245 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD 245 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCC
Confidence 13689999999884322 36899999999999999987779999999999997
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-14 Score=133.20 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=74.9
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|+++-.. .....|...+.++++..+++||+|+
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~-~~g~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~~~~~~l~~~~~~fD~I~ 176 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQ-EAGVRHLGFEPSSGVAAKAREKGIR--------VRTDFFEKATADDVRRTEGPANVIY 176 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHH-HTTCEEEEECCCHHHHHHHHTTTCC--------EECSCCSHHHHHHHHHHHCCEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHH-HcCCcEEEECCCHHHHHHHHHcCCC--------cceeeechhhHhhcccCCCCEEEEE
Confidence 457799999999999999999 5677999999999999999987110 0111122233333333347899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++|++|+. .+|++++++|+||
T Consensus 177 ~~~vl~h~~d~~--~~l~~~~r~Lkpg 201 (416)
T 4e2x_A 177 AANTLCHIPYVQ--SVLEGVDALLAPD 201 (416)
T ss_dssp EESCGGGCTTHH--HHHHHHHHHEEEE
T ss_pred ECChHHhcCCHH--HHHHHHHHHcCCC
Confidence 999999999877 9999999999996
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-13 Score=113.15 Aligned_cols=101 Identities=11% Similarity=-0.038 Sum_probs=78.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDl 233 (262)
++.+|||+|||+|.++..++.... .+|+++|+|+.|++.|++++.... ...+++++++|+.++. ..+++||+
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~fD~ 96 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-----LIDRVTLIKDGHQNMDKYIDCPVKA 96 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT-----CGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCCeEEEECCHHHHhhhccCCceE
Confidence 577999999999999999995532 489999999999999999976421 1247999999988874 33478999
Q ss_pred hhhhhHHh------hcCc-hhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIG------HLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~------hltD-~el~~~l~~~~~~LkPG 262 (262)
|+++.++. ++.. .+...+++++.++|+||
T Consensus 97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 132 (197)
T 3eey_A 97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG 132 (197)
T ss_dssp EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE
T ss_pred EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC
Confidence 99987541 1122 23447999999999986
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-13 Score=123.66 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=80.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+++....+|++||+| .|++.|++++.... ...+++|+++|+++++.+.++||+|+|
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~fD~Iis 139 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANK-----LDHVVTIIKGKVEEVELPVEKVDIIIS 139 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTT-----CTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcC-----CCCcEEEEECcHHHccCCCCceEEEEE
Confidence 467999999999999999995434599999999 59999999875421 123589999999998765579999999
Q ss_pred hhHHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
.++.+++.. ..+..++..+.++|+||
T Consensus 140 ~~~~~~l~~~~~~~~~l~~~~r~Lkpg 166 (349)
T 3q7e_A 140 EWMGYCLFYESMLNTVLHARDKWLAPD 166 (349)
T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEEE
T ss_pred ccccccccCchhHHHHHHHHHHhCCCC
Confidence 886555533 34448999999999996
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.37 E-value=9.2e-13 Score=113.78 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=76.7
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC----CCCCCC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----FTPETG 229 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~----~~~~~~ 229 (262)
..++.+|||+|||+|.++..|+.... .+|++||+|+.|++.|++++.. ..++.++.+|+.+ ..+. +
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~v~~~~~d~~~~~~~~~~~-~ 142 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--------RENIIPILGDANKPQEYANIV-E 142 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--------CTTEEEEECCTTCGGGGTTTS-C
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc--------CCCeEEEECCCCCcccccccC-c
Confidence 34577999999999999999994433 6899999999999999998642 1578999999988 5554 6
Q ss_pred ccchhhhhhHHhhcCchhH-HHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDF-VSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el-~~~l~~~~~~LkPG 262 (262)
+||+|+ +++++++. ..+++++.+.|+||
T Consensus 143 ~~D~v~-----~~~~~~~~~~~~l~~~~~~Lkpg 171 (230)
T 1fbn_A 143 KVDVIY-----EDVAQPNQAEILIKNAKWFLKKG 171 (230)
T ss_dssp CEEEEE-----ECCCSTTHHHHHHHHHHHHEEEE
T ss_pred cEEEEE-----EecCChhHHHHHHHHHHHhCCCC
Confidence 899998 66777632 36899999999986
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-13 Score=118.49 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=76.4
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC---CCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~---~~~yD 232 (262)
++.+|||+|||+|.++..|+... ..+|++||+|+.|++.|++++... ...+++|+++|++++... .++||
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~fD 143 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL------QLENTTFCHDRAETFGQRKDVRESYD 143 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH------TCSSEEEEESCHHHHTTCTTTTTCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCEEEEeccHHHhcccccccCCcc
Confidence 46799999999999999999432 458999999999999999987543 123689999999887532 36899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|+|.. +.+.+ .+++.+.++|+||
T Consensus 144 ~V~~~~----~~~~~--~~l~~~~~~Lkpg 167 (240)
T 1xdz_A 144 IVTARA----VARLS--VLSELCLPLVKKN 167 (240)
T ss_dssp EEEEEC----CSCHH--HHHHHHGGGEEEE
T ss_pred EEEEec----cCCHH--HHHHHHHHhcCCC
Confidence 999976 34444 8999999999986
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.9e-13 Score=121.27 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=82.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
.++.+|||+|||+|.++..|+... ..+++++|+ +.|++.|++++... ....+++|+.+|+.+..+ ..||+|
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~--~~~D~v 252 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA-----GLADRVTVAEGDFFKPLP--VTADVV 252 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT-----TCTTTEEEEECCTTSCCS--CCEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhc-----CCCCceEEEeCCCCCcCC--CCCCEE
Confidence 356799999999999999999443 247999999 99999999987542 112379999999976323 359999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++++++||+++++...+|+++.++|+||
T Consensus 253 ~~~~vl~~~~~~~~~~~l~~~~~~L~pg 280 (374)
T 1qzz_A 253 LLSFVLLNWSDEDALTILRGCVRALEPG 280 (374)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred EEeccccCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999998889999999999986
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.3e-13 Score=122.88 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=81.6
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..++.....+|++||+| .|++.|++++... ....+++++++|++++..+ ++||+|+
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~-~~~D~Iv 134 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKAN-----NLDHIVEVIEGSVEDISLP-EKVDVII 134 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHT-----TCTTTEEEEESCGGGCCCS-SCEEEEE
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHc-----CCCCeEEEEECchhhcCcC-CcceEEE
Confidence 3578999999999999999994434499999999 9999999987542 1224589999999998765 7999999
Q ss_pred hhhHHhhcCch-hHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDD-DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~-el~~~l~~~~~~LkPG 262 (262)
|.++.+++..+ .+..+++.+.++|+||
T Consensus 135 ~~~~~~~l~~e~~~~~~l~~~~~~Lkpg 162 (376)
T 3r0q_C 135 SEWMGYFLLRESMFDSVISARDRWLKPT 162 (376)
T ss_dssp ECCCBTTBTTTCTHHHHHHHHHHHEEEE
T ss_pred EcChhhcccchHHHHHHHHHHHhhCCCC
Confidence 98766666543 3558999999999996
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.3e-13 Score=118.01 Aligned_cols=100 Identities=17% Similarity=0.056 Sum_probs=77.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~yDl 233 (262)
++.+|||+|||+|.++..++ +.+. +|++||+++.+++.|++++.... ...+++++++|+.++.. ..++||+
T Consensus 49 ~~~~vLDlG~G~G~~~~~la-~~~~~~v~gvDi~~~~~~~a~~n~~~~~-----~~~~v~~~~~D~~~~~~~~~~~~fD~ 122 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLS-TRTKAKIVGVEIQERLADMAKRSVAYNQ-----LEDQIEIIEYDLKKITDLIPKERADI 122 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHH-TTCCCEEEEECCSHHHHHHHHHHHHHTT-----CTTTEEEECSCGGGGGGTSCTTCEEE
T ss_pred CCCEEEEcCCchhHHHHHHH-HhcCCcEEEEECCHHHHHHHHHHHHHCC-----CcccEEEEECcHHHhhhhhccCCccE
Confidence 47899999999999999999 4444 89999999999999999986421 12368999999998753 2478999
Q ss_pred hhhhhHHhhc------------------CchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHL------------------TDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hl------------------tD~el~~~l~~~~~~LkPG 262 (262)
|+++.++++. ....+..+++.+.++|+||
T Consensus 123 Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg 169 (259)
T 3lpm_A 123 VTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQG 169 (259)
T ss_dssp EEECCCC-----------------------HHHHHHHHHHHHHEEEE
T ss_pred EEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCC
Confidence 9998654332 1234558999999999986
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=125.92 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=83.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+++....+|+++|+|+ |++.|++++... ....+++|+.+|+.+++.+ ++||+|+|
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~-----gl~~~v~~~~~d~~~~~~~-~~fD~Ivs 230 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSN-----NLTDRIVVIPGKVEEVSLP-EQVDIIIS 230 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHT-----TCTTTEEEEESCTTTCCCS-SCEEEEEC
T ss_pred CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHc-----CCCCcEEEEECchhhCccC-CCeEEEEE
Confidence 4679999999999999999943345899999999 999999987542 1224799999999987654 68999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++++|+.+++...++..+++.|+||
T Consensus 231 ~~~~~~~~~e~~~~~l~~~~~~Lkpg 256 (480)
T 3b3j_A 231 EPMGYMLFNERMLESYLHAKKYLKPS 256 (480)
T ss_dssp CCCHHHHTCHHHHHHHHHGGGGEEEE
T ss_pred eCchHhcCcHHHHHHHHHHHHhcCCC
Confidence 99999999888778888999999986
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=114.00 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=79.0
Q ss_pred CCceeeEeeccccHHHHHHHHh--c-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcc--------------------
Q 024811 157 QHLVALDCGSGIGRITKNLLIR--Y-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-------------------- 213 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~--~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~-------------------- 213 (262)
++.+|||+|||+|.++..++.. . ..+|+++|+|+.|++.|++++...... .....
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPA--GLTARELERREQSERFGKPSYLEAA 128 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHH--HHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhc--cccccchhhhhhhhhcccccchhhh
Confidence 4679999999999999999954 1 457999999999999999887532000 00001
Q ss_pred -----eE-------------EEEcCCCCCCC-----CCCccchhhhhhHHhhcCc-------hhHHHHHHHHHhhccCC
Q 024811 214 -----TN-------------FFCVPLQDFTP-----ETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 214 -----v~-------------f~~~d~~~~~~-----~~~~yDlI~s~~vl~hltD-------~el~~~l~~~~~~LkPG 262 (262)
++ |+++|+.+..+ ...+||+|+|+.++++..+ .....+++++.++|+||
T Consensus 129 ~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 207 (250)
T 1o9g_A 129 QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH 207 (250)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred hhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence 56 99999988642 2248999999988777765 44568999999999997
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=112.38 Aligned_cols=95 Identities=9% Similarity=-0.015 Sum_probs=70.3
Q ss_pred CCCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC---CCCCCc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETGR 230 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~---~~~~~~ 230 (262)
..++.+|||+|||+|.++..|+... ..+|+++|+|+.|++.+.+.... ..++.++.+|+.+. .+..++
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~~~~~ 126 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--------RNNIIPLLFDASKPWKYSGIVEK 126 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--------CSSEEEECSCTTCGGGTTTTCCC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc--------CCCeEEEEcCCCCchhhcccccc
Confidence 3457899999999999999999443 25799999999988766654322 13678888888774 222368
Q ss_pred cchhhhhhHHhhcCch-hHHHHHHHHHhhccCC
Q 024811 231 YDVIWVQWCIGHLTDD-DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~vl~hltD~-el~~~l~~~~~~LkPG 262 (262)
||+|+++. .++ +...+++++.++||||
T Consensus 127 fD~V~~~~-----~~~~~~~~~l~~~~r~Lkpg 154 (210)
T 1nt2_A 127 VDLIYQDI-----AQKNQIEILKANAEFFLKEK 154 (210)
T ss_dssp EEEEEECC-----CSTTHHHHHHHHHHHHEEEE
T ss_pred eeEEEEec-----cChhHHHHHHHHHHHHhCCC
Confidence 99999972 222 2335799999999996
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.4e-13 Score=114.34 Aligned_cols=90 Identities=17% Similarity=0.074 Sum_probs=75.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..|+ ..+.+|+++|+|+.+++.|++++... . +++++++|+.+..+..++||+|+
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~-~~~~~v~~vD~~~~~~~~a~~~~~~~-------~-~v~~~~~d~~~~~~~~~~fD~v~ 139 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIA-EIVDKVVSVEINEKMYNYASKLLSYY-------N-NIKLILGDGTLGYEEEKPYDRVV 139 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHH-HHSSEEEEEESCHHHHHHHHHHHTTC-------S-SEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHH-HHcCEEEEEeCCHHHHHHHHHHHhhc-------C-CeEEEECCcccccccCCCccEEE
Confidence 357799999999999999999 55689999999999999999987532 2 78999999987333346899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..+++|+.+ ++.+.|+||
T Consensus 140 ~~~~~~~~~~--------~~~~~L~pg 158 (231)
T 1vbf_A 140 VWATAPTLLC--------KPYEQLKEG 158 (231)
T ss_dssp ESSBBSSCCH--------HHHHTEEEE
T ss_pred ECCcHHHHHH--------HHHHHcCCC
Confidence 9999999874 477788875
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.34 E-value=7.4e-13 Score=113.66 Aligned_cols=100 Identities=10% Similarity=0.174 Sum_probs=76.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yDl 233 (262)
++.+|||||||+|.++..|+... ..+|++||+|+.|++.|++++... ...++.|+++|+.++. .++++||.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~------~~~nv~~~~~d~~~l~~~~~~~~~d~ 111 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS------EAQNVKLLNIDADTLTDVFEPGEVKR 111 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS------CCSSEEEECCCGGGHHHHCCTTSCCE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHc------CCCCEEEEeCCHHHHHhhcCcCCcCE
Confidence 35689999999999999999543 457999999999999999987542 2357999999998753 33468999
Q ss_pred hhhhhHHhhcCch------hHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDD------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~------el~~~l~~~~~~LkPG 262 (262)
|+++++..|.... ....+++++.++|+||
T Consensus 112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lkpg 146 (213)
T 2fca_A 112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG 146 (213)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred EEEECCCCCcCccccccccCcHHHHHHHHHHcCCC
Confidence 9887543322211 0237999999999997
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-13 Score=117.77 Aligned_cols=99 Identities=14% Similarity=0.054 Sum_probs=76.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC-C--CCCCcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T--PETGRY 231 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~-~--~~~~~y 231 (262)
...+|||||||+|.++..++ +.++ +|++||+|+.|++.|++++... ...++.|+++|+.++ + .++++|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA-~~~p~~~v~giD~s~~~l~~a~~~~~~~------~l~nv~~~~~Da~~~l~~~~~~~~~ 106 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMA-KDRPEQDFLGIEVHSPGVGACLASAHEE------GLSNLRVMCHDAVEVLHKMIPDNSL 106 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHH-HHCTTSEEEEECSCHHHHHHHHHHHHHT------TCSSEEEECSCHHHHHHHHSCTTCE
T ss_pred CCCeEEEEeeeChHHHHHHH-HHCCCCeEEEEEecHHHHHHHHHHHHHh------CCCcEEEEECCHHHHHHHHcCCCCh
Confidence 35689999999999999999 4443 5999999999999999987542 235799999998774 1 234799
Q ss_pred chhhhhhHHhhcCchhH------HHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDF------VSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el------~~~l~~~~~~LkPG 262 (262)
|.|+++++..+...... ..+++.+.++|+||
T Consensus 107 d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpG 143 (218)
T 3dxy_A 107 RMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLG 143 (218)
T ss_dssp EEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEE
T ss_pred heEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCC
Confidence 99999865433322211 15999999999997
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-13 Score=115.77 Aligned_cols=95 Identities=12% Similarity=0.027 Sum_probs=74.3
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
+..+|||+|||+|-++..++ .. ..+|.++|.|+.|++.++++++... ...++++ .|..+..+ +++||+|
T Consensus 49 ~~~~VLDlGCG~GplAl~l~-~~~p~a~~~A~Di~~~~leiar~~~~~~g-----~~~~v~~--~d~~~~~~-~~~~DvV 119 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQW-NENEKIIYHAYDIDRAEIAFLSSIIGKLK-----TTIKYRF--LNKESDVY-KGTYDVV 119 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHH-CSSCCCEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEE--ECCHHHHT-TSEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHH-hcCCCCEEEEEeCCHHHHHHHHHHHHhcC-----CCccEEE--ecccccCC-CCCcChh
Confidence 57899999999999999997 43 3489999999999999999986531 1114555 66655434 4789999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++..++||+.+.+ ..+.++.+.|+||
T Consensus 120 La~k~LHlL~~~~--~al~~v~~~L~pg 145 (200)
T 3fzg_A 120 FLLKMLPVLKQQD--VNILDFLQLFHTQ 145 (200)
T ss_dssp EEETCHHHHHHTT--CCHHHHHHTCEEE
T ss_pred hHhhHHHhhhhhH--HHHHHHHHHhCCC
Confidence 9999999994444 5666899999986
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-13 Score=114.04 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=75.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC-CCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~-~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..++.+...+|+++|.|+.|++.|++++... ...+++|+++|+.++ +...++||+|+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~------~~~~v~~~~~D~~~~~~~~~~~fD~V~ 127 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL------KAGNARVVNSNAMSFLAQKGTPHNIVF 127 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT------TCCSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHHHhhcCCCCCEEE
Confidence 36799999999999999988555568999999999999999998642 124789999998774 32346899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHh--hccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKV--NHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~--~LkPG 262 (262)
++.+++ ..+.+ .+++.+.+ +|+||
T Consensus 128 ~~~p~~-~~~~~--~~l~~l~~~~~L~pg 153 (202)
T 2fpo_A 128 VDPPFR-RGLLE--ETINLLEDNGWLADE 153 (202)
T ss_dssp ECCSSS-TTTHH--HHHHHHHHTTCEEEE
T ss_pred ECCCCC-CCcHH--HHHHHHHhcCccCCC
Confidence 987743 33333 67777765 48885
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-12 Score=119.20 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=81.6
Q ss_pred ceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
.+|||+|||+|.++..++... ..+++++|+ +.+++.|++++.... ...+++|+.+|+.+. .+ +.||+|++.
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~-~~-~~~D~v~~~ 240 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL-----AGERVSLVGGDMLQE-VP-SNGDIYLLS 240 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH-----HTTSEEEEESCTTTC-CC-SSCSEEEEE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC-----CCCcEEEecCCCCCC-CC-CCCCEEEEc
Confidence 799999999999999999443 347999999 999999999875321 123689999999873 33 579999999
Q ss_pred hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 238 WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++||+++++...++++++++|+||
T Consensus 241 ~vl~~~~~~~~~~~l~~~~~~L~pg 265 (334)
T 2ip2_A 241 RIIGDLDEAASLRLLGNCREAMAGD 265 (334)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHSCTT
T ss_pred hhccCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999889999999999997
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=116.44 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=77.3
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++... ...+++|+++|+.+..+ .++||+|+
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~------~~~~v~~~~~d~~~~~~-~~~fD~Iv 181 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL------AIKNIHILQSDWFSALA-GQQFAMIV 181 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH------TCCSEEEECCSTTGGGT-TCCEEEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEEcchhhhcc-cCCccEEE
Confidence 46799999999999999999443 458999999999999999997542 12368999999987543 36899999
Q ss_pred hhhH-------------HhhcCc----------hhHHHHHHHHHhhccCC
Q 024811 236 VQWC-------------IGHLTD----------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~v-------------l~hltD----------~el~~~l~~~~~~LkPG 262 (262)
++.+ ++|-+. .....+++.+.+.|+||
T Consensus 182 ~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkpg 231 (276)
T 2b3t_A 182 SNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG 231 (276)
T ss_dssp ECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE
T ss_pred ECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 9843 333332 23457999999999986
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.4e-13 Score=109.57 Aligned_cols=98 Identities=14% Similarity=0.071 Sum_probs=75.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~~yD 232 (262)
++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++.... ...+++|+++|+.++.+ ..++||
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~fD 118 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK-----EPEKFEVRKMDANRALEQFYEEKLQFD 118 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT-----CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC-----CCcceEEEECcHHHHHHHHHhcCCCCC
Confidence 467999999999999999985444689999999999999999875431 12468999999987532 136899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHH--HhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRA--KVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~--~~~LkPG 262 (262)
+|+++.+++ ..+.+ .+++.+ .++|+||
T Consensus 119 ~i~~~~~~~-~~~~~--~~~~~l~~~~~L~~g 147 (187)
T 2fhp_A 119 LVLLDPPYA-KQEIV--SQLEKMLERQLLTNE 147 (187)
T ss_dssp EEEECCCGG-GCCHH--HHHHHHHHTTCEEEE
T ss_pred EEEECCCCC-chhHH--HHHHHHHHhcccCCC
Confidence 999998754 33333 556666 7888886
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=119.11 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=79.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+++....+|+++|+| .|++.|++++... ....+++++.+|+++++.+.++||+|+|
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~D~Ivs 111 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELN-----GFSDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHT-----TCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHc-----CCCCCEEEEECchhhccCCCCcccEEEE
Confidence 467999999999999999994434589999999 6999999987542 1224689999999998665578999999
Q ss_pred hhHHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
.++.+++.. ..+..++..+.++|+||
T Consensus 112 ~~~~~~l~~~~~~~~~l~~~~~~Lkpg 138 (328)
T 1g6q_1 112 EWMGYFLLYESMMDTVLYARDHYLVEG 138 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEE
T ss_pred eCchhhcccHHHHHHHHHHHHhhcCCC
Confidence 876555543 33458999999999986
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=109.62 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=75.5
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++... ...+++++++|+.++.+. ++||+|++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~-~~~D~i~~ 138 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL------KLENIEPVQSRVEEFPSE-PPFDGVIS 138 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT------TCSSEEEEECCTTTSCCC-SCEEEEEC
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEecchhhCCcc-CCcCEEEE
Confidence 6799999999999999999443 458999999999999999987542 223589999999988643 68999998
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+. +.+. ..+++.+.+.|+||
T Consensus 139 ~~----~~~~--~~~l~~~~~~L~~g 158 (207)
T 1jsx_A 139 RA----FASL--NDMVSWCHHLPGEQ 158 (207)
T ss_dssp SC----SSSH--HHHHHHHTTSEEEE
T ss_pred ec----cCCH--HHHHHHHHHhcCCC
Confidence 64 2333 38999999999986
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=110.27 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=69.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++. +++++++|+.+++ ++||+|++
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----------~~~~~~~d~~~~~---~~~D~v~~ 116 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVSEIS---GKYDTWIM 116 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGGGCC---CCEEEEEE
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----------CCEEEECcHHHCC---CCeeEEEE
Confidence 467999999999999999994434479999999999999999863 5789999998863 58999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhc
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNH 259 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~L 259 (262)
+.+++|+.+.....+++++.+.|
T Consensus 117 ~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 117 NPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp CCCC-------CHHHHHHHHHHE
T ss_pred CCCchhccCchhHHHHHHHHHhc
Confidence 99999998644346888887765
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-13 Score=110.02 Aligned_cols=94 Identities=16% Similarity=0.107 Sum_probs=73.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~~yD 232 (262)
++.+|||+|||+|.++..++ +.+.+|+++|+|+.|++.|++++... .. +++++++|+.++.+ ..++||
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~-~~~~~v~~vD~~~~~~~~a~~~~~~~------~~-~~~~~~~d~~~~~~~~~~~~~~~D 112 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAA-SEGWEAVLVEKDPEAVRLLKENVRRT------GL-GARVVALPVEVFLPEAKAQGERFT 112 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHH-HTTCEEEEECCCHHHHHHHHHHHHHH------TC-CCEEECSCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeCCCcCHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHHHHc------CC-ceEEEeccHHHHHHhhhccCCceE
Confidence 46799999999999999999 55667999999999999999987642 11 68899999877422 123799
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHH--hhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAK--VNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~--~~LkPG 262 (262)
+|+++.+++ .+.+ .+++.+. ++|+||
T Consensus 113 ~i~~~~~~~--~~~~--~~~~~~~~~~~L~~g 140 (171)
T 1ws6_A 113 VAFMAPPYA--MDLA--ALFGELLASGLVEAG 140 (171)
T ss_dssp EEEECCCTT--SCTT--HHHHHHHHHTCEEEE
T ss_pred EEEECCCCc--hhHH--HHHHHHHhhcccCCC
Confidence 999998765 4433 5666666 899885
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.9e-13 Score=111.51 Aligned_cols=93 Identities=12% Similarity=-0.004 Sum_probs=75.1
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..++...+ .+|+++|+|+.+++.|++++... ...++.++.+|+....+..++||+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~fD~ 149 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKL------GYDNVIVIVGDGTLGYEPLAPYDR 149 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH------TCTTEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEECCcccCCCCCCCeeE
Confidence 3577999999999999999995543 68999999999999999987542 123689999998654333468999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+++.+++|+.+ ++.+.|+||
T Consensus 150 v~~~~~~~~~~~--------~~~~~L~pg 170 (215)
T 2yxe_A 150 IYTTAAGPKIPE--------PLIRQLKDG 170 (215)
T ss_dssp EEESSBBSSCCH--------HHHHTEEEE
T ss_pred EEECCchHHHHH--------HHHHHcCCC
Confidence 999999999873 577888875
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-12 Score=118.20 Aligned_cols=99 Identities=20% Similarity=0.245 Sum_probs=81.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
.++.+|||+|||+|.++..|+... ..+++++|+ +.|++.|++++.... ...+++|+.+|+.+..+ ..||+|
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~--~~~D~v 253 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG-----LSDRVDVVEGDFFEPLP--RKADAI 253 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT-----CTTTEEEEECCTTSCCS--SCEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC-----CCCceEEEeCCCCCCCC--CCccEE
Confidence 356799999999999999999443 236788898 999999999875421 12378999999976333 359999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++.++||+++++...+|+++.++|+||
T Consensus 254 ~~~~vl~~~~~~~~~~~l~~~~~~L~pg 281 (360)
T 1tw3_A 254 ILSFVLLNWPDHDAVRILTRCAEALEPG 281 (360)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred EEcccccCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999998889999999999986
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-12 Score=113.28 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=77.1
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-------CCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------PET 228 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-------~~~ 228 (262)
++.+|||+|||+|.++..|+.+. ..+|++||+++.|++.|++++.....+ ....+++++++|+.++. ...
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~--~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNA--AFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGT--TTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhC--CCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 46799999999999999999443 358999999999999999997530000 11235899999999872 234
Q ss_pred CccchhhhhhHHh----------------hcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIG----------------HLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~----------------hltD~el~~~l~~~~~~LkPG 262 (262)
++||+|+++.++. |.....+..+++.+.++|+||
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg 163 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSG 163 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCC
Confidence 6899999984432 223334668999999999986
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=107.32 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=77.1
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..++ +.+.+|+++|+|+.+++.|++++.... ...++.++++|+.+..+..++||+|+
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~-~~~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~D~v~ 105 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELA-GRVRRVYAIDRNPEAISTTEMNLQRHG-----LGDNVTLMEGDAPEALCKIPDIDIAV 105 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHH-TTSSEEEEEESCHHHHHHHHHHHHHTT-----CCTTEEEEESCHHHHHTTSCCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHH-HhcCEEEEEECCHHHHHHHHHHHHHcC-----CCcceEEEecCHHHhcccCCCCCEEE
Confidence 357799999999999999999 555899999999999999999875421 11478999999876322225899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..+++|+ ..+++++.++|+||
T Consensus 106 ~~~~~~~~-----~~~l~~~~~~l~~g 127 (192)
T 1l3i_A 106 VGGSGGEL-----QEILRIIKDKLKPG 127 (192)
T ss_dssp ESCCTTCH-----HHHHHHHHHTEEEE
T ss_pred ECCchHHH-----HHHHHHHHHhcCCC
Confidence 98776543 48999999999986
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-12 Score=108.71 Aligned_cols=87 Identities=20% Similarity=0.064 Sum_probs=71.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+ +|+++|+|+.|++. . .+++++++|+.+..+ +++||+|++
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~-~~~-~v~gvD~s~~~~~~-----~----------~~~~~~~~d~~~~~~-~~~fD~i~~ 84 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLR-KRN-TVVSTDLNIRALES-----H----------RGGNLVRADLLCSIN-QESVDVVVF 84 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHT-TTS-EEEEEESCHHHHHT-----C----------SSSCEEECSTTTTBC-GGGCSEEEE
T ss_pred CCCeEEEeccCccHHHHHHH-hcC-cEEEEECCHHHHhc-----c----------cCCeEEECChhhhcc-cCCCCEEEE
Confidence 46699999999999999999 556 99999999999988 1 257899999988533 379999999
Q ss_pred hhHHhhcCch-------hHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDD-------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~-------el~~~l~~~~~~LkPG 262 (262)
+.++++.++. +...+++++.+.| ||
T Consensus 85 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pg 116 (170)
T 3q87_B 85 NPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TV 116 (170)
T ss_dssp CCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CS
T ss_pred CCCCccCCccccccCCcchHHHHHHHHhhC-CC
Confidence 9998877665 3347888888877 64
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=7.7e-13 Score=120.19 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=76.0
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCc---EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCcc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~---V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~y 231 (262)
..++.+|||+|||+|.++..++ +.+.. |+++|+|+.+++.|++++... ...+++++.+|+.+..+..++|
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la-~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------g~~~v~~~~~d~~~~~~~~~~f 145 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMS-RVVGEKGLVVSVEYSRKICEIAKRNVERL------GIENVIFVCGDGYYGVPEFSPY 145 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH-HHHCTTCEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCCGGGCCE
T ss_pred CCCcCEEEEecCCchHHHHHHH-HhcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCeEEEECChhhccccCCCe
Confidence 3457899999999999999999 44444 999999999999999987542 2245899999998865444789
Q ss_pred chhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|++..+++|+. +.+.+.|+||
T Consensus 146 D~Iv~~~~~~~~~--------~~~~~~Lkpg 168 (317)
T 1dl5_A 146 DVIFVTVGVDEVP--------ETWFTQLKEG 168 (317)
T ss_dssp EEEEECSBBSCCC--------HHHHHHEEEE
T ss_pred EEEEEcCCHHHHH--------HHHHHhcCCC
Confidence 9999999999987 3567788885
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-12 Score=111.69 Aligned_cols=98 Identities=10% Similarity=0.109 Sum_probs=76.7
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC------C
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------T 228 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~------~ 228 (262)
++.+|||+|||+|..+..++... ..+|++||+|+.|++.|++++.... ...+++++++|+.++.+. .
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~l~~~~~~~~~ 132 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG-----LQDKVTILNGASQDLIPQLKKKYDV 132 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-----CGGGEEEEESCHHHHGGGTTTTSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC-----CCCceEEEECCHHHHHHHHHHhcCC
Confidence 46799999999999999999432 4589999999999999999986531 123699999997553211 1
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++||+|++....++..+.. .++..+ ++|+||
T Consensus 133 ~~fD~V~~d~~~~~~~~~~--~~~~~~-~~Lkpg 163 (221)
T 3u81_A 133 DTLDMVFLDHWKDRYLPDT--LLLEKC-GLLRKG 163 (221)
T ss_dssp CCCSEEEECSCGGGHHHHH--HHHHHT-TCCCTT
T ss_pred CceEEEEEcCCcccchHHH--HHHHhc-cccCCC
Confidence 5899999988777765544 788888 999997
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-12 Score=114.47 Aligned_cols=106 Identities=9% Similarity=0.017 Sum_probs=74.7
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC-CC--CCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT--PETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~-~~--~~~~~yD 232 (262)
+..+|||||||+|.++..|+... ...|++||+|+.|++.|++++...+........+++|+++|+.+ ++ ...++||
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 46789999999999999999432 34799999999999999987643111001123579999999987 33 3357899
Q ss_pred hhhhhhHHhhcCch------hHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDD------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~------el~~~l~~~~~~LkPG 262 (262)
.|+++++-.|.... ....+|+++.++|+||
T Consensus 126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpG 161 (235)
T 3ckk_A 126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVG 161 (235)
T ss_dssp EEEEESCC-----------CCCHHHHHHHHHHEEEE
T ss_pred EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCC
Confidence 99876543222110 0126999999999996
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-12 Score=117.86 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=74.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.+..+|||||||+|.++..|+ +.++ +++++|+ +.++. ++++... ....+++|+.+|+.+..| +||+
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~--~~~~~~~-----~~~~~v~~~~~d~~~~~p---~~D~ 250 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVL-REHPGLQGVLLDR-AEVVA--RHRLDAP-----DVAGRWKVVEGDFLREVP---HADV 250 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHH-HHCTTEEEEEEEC-HHHHT--TCCCCCG-----GGTTSEEEEECCTTTCCC---CCSE
T ss_pred cCCceEEEECCccCHHHHHHH-HHCCCCEEEEecC-HHHhh--ccccccc-----CCCCCeEEEecCCCCCCC---CCcE
Confidence 457899999999999999999 4444 5788898 45554 3333221 123469999999973322 8999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++++++||++|++...+|++++++|+||
T Consensus 251 v~~~~vlh~~~d~~~~~~L~~~~~~Lkpg 279 (348)
T 3lst_A 251 HVLKRILHNWGDEDSVRILTNCRRVMPAH 279 (348)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTCCTT
T ss_pred EEEehhccCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999998889999999999997
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-12 Score=119.10 Aligned_cols=89 Identities=13% Similarity=0.225 Sum_probs=75.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
+..+|||||||+|.++..|+... ..+++++|+ +.|++.|++. .+++|+.+|+.+ +.+ .||+|+
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~~-~~p--~~D~v~ 251 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------------NNLTYVGGDMFT-SIP--NADAVL 251 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------------TTEEEEECCTTT-CCC--CCSEEE
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------------CCcEEEeccccC-CCC--CccEEE
Confidence 46799999999999999999443 337999999 9999877652 258999999976 332 399999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
+++++||++|++...+|++++++|+|
T Consensus 252 ~~~~lh~~~d~~~~~~l~~~~~~L~p 277 (352)
T 1fp2_A 252 LKYILHNWTDKDCLRILKKCKEAVTN 277 (352)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHSG
T ss_pred eehhhccCCHHHHHHHHHHHHHhCCC
Confidence 99999999999988999999999999
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.3e-13 Score=109.85 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=74.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++... ....++.++++|+.++. ...++||+|+
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~fD~i~ 105 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMT-----KAENRFTLLKMEAERAIDCLTGRFDLVF 105 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTT-----TCGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCceEEEECcHHHhHHhhcCCCCEEE
Confidence 46799999999999999999543468999999999999999988542 11236899999988742 2235799999
Q ss_pred hhhHHhhcCchhHHHHHHHHH--hhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAK--VNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~--~~LkPG 262 (262)
++.++++ .+ ...+++.+. ++|+||
T Consensus 106 ~~~~~~~-~~--~~~~~~~l~~~~~L~~g 131 (177)
T 2esr_A 106 LDPPYAK-ET--IVATIEALAAKNLLSEQ 131 (177)
T ss_dssp ECCSSHH-HH--HHHHHHHHHHTTCEEEE
T ss_pred ECCCCCc-ch--HHHHHHHHHhCCCcCCC
Confidence 9876543 22 225666666 888886
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.6e-12 Score=116.44 Aligned_cols=97 Identities=10% Similarity=0.152 Sum_probs=80.9
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~--V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
....+|||||||+|.++..|+ +.+++ +++.|. |.+++.|++++... ...+++|+.+|+.+.++ ..+|+
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~-~~~p~~~~~~~dl-p~v~~~a~~~~~~~------~~~rv~~~~gD~~~~~~--~~~D~ 247 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECM-SLYPGCKITVFDI-PEVVWTAKQHFSFQ------EEEQIDFQEGDFFKDPL--PEADL 247 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHH-HHCSSCEEEEEEC-HHHHHHHHHHSCC--------CCSEEEEESCTTTSCC--CCCSE
T ss_pred ccCCeEEeeCCCCCHHHHHHH-HhCCCceeEeccC-HHHHHHHHHhhhhc------ccCceeeecCccccCCC--CCceE
Confidence 345689999999999999999 55654 556676 88999999987542 23589999999976533 36899
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++.++||+++|++..++|++++++|+||
T Consensus 248 ~~~~~vlh~~~d~~~~~iL~~~~~al~pg 276 (353)
T 4a6d_A 248 YILARVLHDWADGKCSHLLERIYHTCKPG 276 (353)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHHHHCCTT
T ss_pred EEeeeecccCCHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999997
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-12 Score=112.06 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=70.7
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCC-HHHHHHH---HhhcccccccCCCCCcceEEEEcCCCCCCCC-CCc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPV-SHFLDAA---RESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGR 230 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s-~~mld~A---r~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~ 230 (262)
++.+|||||||+|.++..|+... ..+|++||+| +.|++.| ++++... ...++.|+++|+++++.. .+.
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~------~~~~v~~~~~d~~~l~~~~~d~ 97 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG------GLSNVVFVIAAAESLPFELKNI 97 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT------CCSSEEEECCBTTBCCGGGTTC
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc------CCCCeEEEEcCHHHhhhhccCe
Confidence 47799999999999999999432 4479999999 8888887 7665432 235789999999988421 134
Q ss_pred cchhhhhhHH----hh-cCchhHHHHHHHHHhhccCC
Q 024811 231 YDVIWVQWCI----GH-LTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~vl----~h-ltD~el~~~l~~~~~~LkPG 262 (262)
+|.|++++.. +| ..+.. .+|++++++||||
T Consensus 98 v~~i~~~~~~~~~~~~~~~~~~--~~l~~~~r~LkpG 132 (225)
T 3p2e_A 98 ADSISILFPWGTLLEYVIKPNR--DILSNVADLAKKE 132 (225)
T ss_dssp EEEEEEESCCHHHHHHHHTTCH--HHHHHHHTTEEEE
T ss_pred EEEEEEeCCCcHHhhhhhcchH--HHHHHHHHhcCCC
Confidence 5555555432 12 22333 7899999999997
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-12 Score=103.41 Aligned_cols=88 Identities=13% Similarity=0.168 Sum_probs=72.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++ +...+|+++|+|+.|++.|++++... ...++.++++|+.+. .+.++||+|++
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~-~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~-~~~~~~D~i~~ 106 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIA-KRCKFVYAIDYLDGAIEVTKQNLAKF------NIKNCQIIKGRAEDV-LDKLEFNKAFI 106 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHH-TTSSEEEEEECSHHHHHHHHHHHHHT------TCCSEEEEESCHHHH-GGGCCCSEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHc------CCCcEEEEECCcccc-ccCCCCcEEEE
Confidence 56799999999999999999 56779999999999999999997542 124689999999873 33368999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhh
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVN 258 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~ 258 (262)
+.+ .+ ...+++.+.+.
T Consensus 107 ~~~----~~--~~~~l~~~~~~ 122 (183)
T 2yxd_A 107 GGT----KN--IEKIIEILDKK 122 (183)
T ss_dssp CSC----SC--HHHHHHHHHHT
T ss_pred CCc----cc--HHHHHHHHhhC
Confidence 987 33 34888888887
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.4e-13 Score=118.11 Aligned_cols=98 Identities=12% Similarity=0.001 Sum_probs=70.1
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEE--EcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--CVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~--~~d~~~~~~~~~~yD 232 (262)
..++.+|||+|||||.++..++ +. .+|++||+|+ |+..++++.... .....++.|+ ++|+.+++ +++||
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la-~~-~~V~gvD~s~-m~~~a~~~~~~~----~~~~~~v~~~~~~~D~~~l~--~~~fD 142 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAA-SR-PHVMDVRAYT-LGVGGHEVPRIT----ESYGWNIVKFKSRVDIHTLP--VERTD 142 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHH-TS-TTEEEEEEEC-CCCSSCCCCCCC----CBTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHH-Hc-CcEEEEECch-hhhhhhhhhhhh----hccCCCeEEEecccCHhHCC--CCCCc
Confidence 3457899999999999999999 55 7899999999 643333221000 0111268899 99999885 36899
Q ss_pred hhhhhhHHhhcCchh-----HHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDD-----FVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~e-----l~~~l~~~~~~LkPG 262 (262)
+|+|..+ ++..++. ...+|..+.++|+||
T Consensus 143 ~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpG 176 (265)
T 2oxt_A 143 VIMCDVG-ESSPKWSVESERTIKILELLEKWKVKN 176 (265)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccC
Confidence 9999877 5544432 123789999999997
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-12 Score=113.65 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=75.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++.....+|+++|.|+.|++.|++++.... ...+++|+++|+.++.+ .++||+|++
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~-----~~~~v~~~~~D~~~~~~-~~~fD~Vi~ 198 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK-----VEDRMSAYNMDNRDFPG-ENIADRILM 198 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT-----CTTTEEEECSCTTTCCC-CSCEEEEEE
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEEECCHHHhcc-cCCccEEEE
Confidence 477999999999999999994433469999999999999999876421 12358999999999876 479999998
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+ .+.. .++.++.++|+||
T Consensus 199 ~~p----~~~~--~~l~~~~~~Lkpg 218 (278)
T 2frn_A 199 GYV----VRTH--EFIPKALSIAKDG 218 (278)
T ss_dssp CCC----SSGG--GGHHHHHHHEEEE
T ss_pred CCc----hhHH--HHHHHHHHHCCCC
Confidence 644 2333 7899999999986
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-12 Score=110.70 Aligned_cols=96 Identities=15% Similarity=0.135 Sum_probs=76.3
Q ss_pred CCceeeEeeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~yDl 233 (262)
++.+|||+|||+|..+..|+.. ...+|+++|+|+.|++.|++++.... ...+++|+++|+.++.+ ..++||+
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~fD~ 145 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH-----FENQVRIIEGNALEQFENVNDKVYDM 145 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT-----CTTTEEEEESCGGGCHHHHTTSCEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEECCHHHHHHhhccCCccE
Confidence 4679999999999999999942 25689999999999999999986531 12479999999987643 1368999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++... ......+++.+.+.|+||
T Consensus 146 V~~~~~-----~~~~~~~l~~~~~~Lkpg 169 (232)
T 3ntv_A 146 IFIDAA-----KAQSKKFFEIYTPLLKHQ 169 (232)
T ss_dssp EEEETT-----SSSHHHHHHHHGGGEEEE
T ss_pred EEEcCc-----HHHHHHHHHHHHHhcCCC
Confidence 997642 233458999999999996
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-12 Score=120.53 Aligned_cols=90 Identities=11% Similarity=0.143 Sum_probs=75.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.+..+|||||||+|.++..|+ +.++ +++++|+ +.|++.|++. .+++|+.+|+.+ +.+ . ||+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~-~~~~~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~~-~~~-~-~D~ 270 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELII-SKYPLIKGINFDL-PQVIENAPPL------------SGIEHVGGDMFA-SVP-Q-GDA 270 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-HHHHTTCCCC------------TTEEEEECCTTT-CCC-C-EEE
T ss_pred CCCCEEEEeCCCCcHHHHHHH-HHCCCCeEEEeCh-HHHHHhhhhc------------CCCEEEeCCccc-CCC-C-CCE
Confidence 356799999999999999999 4454 4667799 9999876652 258999999987 333 3 999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++++++||++|++...+|++++++|+||
T Consensus 271 v~~~~~lh~~~d~~~~~~l~~~~~~L~pg 299 (372)
T 1fp1_D 271 MILKAVCHNWSDEKCIEFLSNCHKALSPN 299 (372)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred EEEecccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999889999999999996
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-12 Score=118.08 Aligned_cols=91 Identities=14% Similarity=0.270 Sum_probs=75.9
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
.+..+|||||||+|.++..|++.. ..+++++|+ +.|++.|++. .+++|+.+|+.+. .+. . |+|
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~~~-~p~-~-D~v 265 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------------SGVEHLGGDMFDG-VPK-G-DAI 265 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------------TTEEEEECCTTTC-CCC-C-SEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------------CCCEEEecCCCCC-CCC-C-CEE
Confidence 356799999999999999999443 236888999 8888776542 3689999999873 332 3 999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++||++|++..++|++++++|+||
T Consensus 266 ~~~~vlh~~~~~~~~~~l~~~~~~L~pg 293 (368)
T 3reo_A 266 FIKWICHDWSDEHCLKLLKNCYAALPDH 293 (368)
T ss_dssp EEESCGGGBCHHHHHHHHHHHHHHSCTT
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999899999999999997
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-12 Score=113.58 Aligned_cols=94 Identities=14% Similarity=-0.010 Sum_probs=76.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC---CCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~---~~~yD 232 (262)
++.+|||+|||+|.++..|+... ..+|++||+|+.|++.|++++... ...+++++++|++++.+. .++||
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~l~~v~~~~~d~~~~~~~~~~~~~fD 153 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVL------GLKGARALWGRAEVLAREAGHREAYA 153 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH------TCSSEEEEECCHHHHTTSTTTTTCEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh------CCCceEEEECcHHHhhcccccCCCce
Confidence 56799999999999999999443 458999999999999999998643 234699999999887542 26899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|+|..+ .+. ..+++.+.++|+||
T Consensus 154 ~I~s~a~----~~~--~~ll~~~~~~Lkpg 177 (249)
T 3g89_A 154 RAVARAV----APL--CVLSELLLPFLEVG 177 (249)
T ss_dssp EEEEESS----CCH--HHHHHHHGGGEEEE
T ss_pred EEEECCc----CCH--HHHHHHHHHHcCCC
Confidence 9999743 343 48999999999986
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.7e-13 Score=112.53 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=64.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+. .+|+++|+|+. ++.++++|+.+++.++++||+|++
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred CCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------------CceEEEeccccCCCCCCCEeEEEE
Confidence 46799999999999988774 57999999987 135788899887665678999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++|| .+.. .+|+++.++|+||
T Consensus 122 ~~~l~~-~~~~--~~l~~~~~~L~~g 144 (215)
T 2zfu_A 122 CLSLMG-TNIR--DFLEEANRVLKPG 144 (215)
T ss_dssp ESCCCS-SCHH--HHHHHHHHHEEEE
T ss_pred ehhccc-cCHH--HHHHHHHHhCCCC
Confidence 999964 5555 9999999999986
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.7e-12 Score=117.39 Aligned_cols=91 Identities=13% Similarity=0.209 Sum_probs=76.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
.+..+|||||||+|.++..|++.. ..+++++|+ +.+++.|++. .+++|+.+|+.+ +.+. . |+|
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~D~~~-~~p~-~-D~v 263 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF------------PGVTHVGGDMFK-EVPS-G-DTI 263 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------------TTEEEEECCTTT-CCCC-C-SEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc------------CCeEEEeCCcCC-CCCC-C-CEE
Confidence 356799999999999999999443 236888999 8888776542 378999999987 3333 3 999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++||++|++..++|++++++|+||
T Consensus 264 ~~~~vlh~~~d~~~~~~L~~~~~~L~pg 291 (364)
T 3p9c_A 264 LMKWILHDWSDQHCATLLKNCYDALPAH 291 (364)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTT
T ss_pred EehHHhccCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999997
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.26 E-value=5.3e-12 Score=112.07 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=77.8
Q ss_pred CCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
..++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++.... ...+++++++|+.+..+ .++||
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----g~~~v~~~~~d~~~~~~-~~~fD 181 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY-----DIGNVRTSRSDIADFIS-DQMYD 181 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS-----CCTTEEEECSCTTTCCC-SCCEE
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCCcEEEEECchhccCc-CCCcc
Confidence 3457899999999999999999542 5689999999999999999875310 12478999999988533 36899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++ |+++++ .+++++.+.|+||
T Consensus 182 ~Vi~-----~~~~~~--~~l~~~~~~Lkpg 204 (275)
T 1yb2_A 182 AVIA-----DIPDPW--NHVQKIASMMKPG 204 (275)
T ss_dssp EEEE-----CCSCGG--GSHHHHHHTEEEE
T ss_pred EEEE-----cCcCHH--HHHHHHHHHcCCC
Confidence 9998 677777 8999999999986
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=109.01 Aligned_cols=97 Identities=6% Similarity=-0.078 Sum_probs=76.9
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC---CCC
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~---~~~ 228 (262)
++.++.+|||+|||+|..+..|+...++ +|.++|+|+.|++.+++++.. ..++.++..|..+.. ...
T Consensus 74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~--------~~ni~~V~~d~~~p~~~~~~~ 145 (233)
T 4df3_A 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD--------RRNIFPILGDARFPEKYRHLV 145 (233)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT--------CTTEEEEESCTTCGGGGTTTC
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh--------hcCeeEEEEeccCcccccccc
Confidence 4678999999999999999999955454 699999999999999998643 247888888886542 234
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+|+|++. +.|..+.+ .++.++.+.||||
T Consensus 146 ~~vDvVf~d--~~~~~~~~--~~l~~~~r~LKpG 175 (233)
T 4df3_A 146 EGVDGLYAD--VAQPEQAA--IVVRNARFFLRDG 175 (233)
T ss_dssp CCEEEEEEC--CCCTTHHH--HHHHHHHHHEEEE
T ss_pred ceEEEEEEe--ccCChhHH--HHHHHHHHhccCC
Confidence 689998864 34445555 8999999999996
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-12 Score=114.92 Aligned_cols=98 Identities=9% Similarity=-0.007 Sum_probs=70.5
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEE--EcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--CVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~--~~d~~~~~~~~~~yD 232 (262)
..++.+|||+|||||.++..++ +. .+|++||+|+ |+..++++.... .....++.|+ ++|+.+++ +++||
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la-~~-~~V~gVD~s~-m~~~a~~~~~~~----~~~~~~v~~~~~~~D~~~l~--~~~fD 150 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAA-SQ-PNVREVKAYT-LGTSGHEKPRLV----ETFGWNLITFKSKVDVTKME--PFQAD 150 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHH-TS-TTEEEEEEEC-CCCTTSCCCCCC----CCTTGGGEEEECSCCGGGCC--CCCCS
T ss_pred CCCCCEEEEeccCCCHHHHHHH-Hc-CCEEEEECch-hhhhhhhchhhh----hhcCCCeEEEeccCcHhhCC--CCCcC
Confidence 3457899999999999999999 55 6899999999 754443321100 0112268899 99998875 36899
Q ss_pred hhhhhhHHhhcCchhH-----HHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDF-----VSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el-----~~~l~~~~~~LkPG 262 (262)
+|+|..+ ++..++.+ ..+|..+.++|+||
T Consensus 151 ~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpG 184 (276)
T 2wa2_A 151 TVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYN 184 (276)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccC
Confidence 9999877 55444321 13789999999997
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-12 Score=110.00 Aligned_cols=94 Identities=14% Similarity=0.072 Sum_probs=76.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++.... ...+++++.+|+.+..+ .++||+
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~-~~~~D~ 165 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG-----FDDRVTIKLKDIYEGIE-EENVDH 165 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT-----CTTTEEEECSCGGGCCC-CCSEEE
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC-----CCCceEEEECchhhccC-CCCcCE
Confidence 457899999999999999999542 5689999999999999999986431 12348999999987644 368999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++ +.+++. .+++++.++|+||
T Consensus 166 v~~-----~~~~~~--~~l~~~~~~L~~g 187 (255)
T 3mb5_A 166 VIL-----DLPQPE--RVVEHAAKALKPG 187 (255)
T ss_dssp EEE-----CSSCGG--GGHHHHHHHEEEE
T ss_pred EEE-----CCCCHH--HHHHHHHHHcCCC
Confidence 998 456666 8999999999986
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.6e-12 Score=107.91 Aligned_cols=95 Identities=11% Similarity=-0.127 Sum_probs=73.0
Q ss_pred CCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC---CCCC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~---~~~~ 229 (262)
..++.+|||+|||+|.++..|+... ..+|+++|+|+.|++.+.++... ..++.|+++|+.+.. ...+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--------RTNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--------CTTEEEECSCTTCGGGGGGGCC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc--------cCCeEEEEcccCChhhhcccCC
Confidence 3457899999999999999999553 25899999999988877776532 147899999998842 2346
Q ss_pred ccchhhhhhHHhhcCchh-HHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~e-l~~~l~~~~~~LkPG 262 (262)
+||+|++..+ .++ ...++.++.+.|+||
T Consensus 147 ~~D~V~~~~~-----~~~~~~~~~~~~~~~Lkpg 175 (233)
T 2ipx_A 147 MVDVIFADVA-----QPDQTRIVALNAHTFLRNG 175 (233)
T ss_dssp CEEEEEECCC-----CTTHHHHHHHHHHHHEEEE
T ss_pred cEEEEEEcCC-----CccHHHHHHHHHHHHcCCC
Confidence 8999999654 332 235788999999986
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-13 Score=113.25 Aligned_cols=100 Identities=12% Similarity=0.029 Sum_probs=58.8
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC----CCc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TGR 230 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~----~~~ 230 (262)
.++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|++++... .. +++++++|+.+..+. .++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~-~~~~~~~d~~~~~~~~~~~~~~ 101 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERF------GA-VVDWAAADGIEWLIERAERGRP 101 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------------CCHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh------CC-ceEEEEcchHhhhhhhhhccCc
Confidence 357899999999999999999443 338999999999999999987542 11 678888888763221 268
Q ss_pred cchhhhhhHH------hhcCchhH------------------HHHHHHHHhhccCC
Q 024811 231 YDVIWVQWCI------GHLTDDDF------------------VSFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~vl------~hltD~el------------------~~~l~~~~~~LkPG 262 (262)
||+|+++.++ +|+++... ..+++++.++|+||
T Consensus 102 fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 157 (215)
T 4dzr_A 102 WHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARG 157 (215)
T ss_dssp BSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSS
T ss_pred ccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCC
Confidence 9999997543 34433321 57999999999997
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=104.41 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=75.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++... .. +++++++|+.+++ ++||+|++
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~-~~~~~~~d~~~~~---~~~D~v~~ 118 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF------KG-KFKVFIGDVSEFN---SRVDIVIM 118 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG------TT-SEEEEESCGGGCC---CCCSEEEE
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHc------CC-CEEEEECchHHcC---CCCCEEEE
Confidence 46799999999999999999443457999999999999999997542 11 6899999999873 48999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhc
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNH 259 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~L 259 (262)
+.++++........+++++.+.|
T Consensus 119 ~~p~~~~~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 119 NPPFGSQRKHADRPFLLKAFEIS 141 (207)
T ss_dssp CCCCSSSSTTTTHHHHHHHHHHC
T ss_pred cCCCccccCCchHHHHHHHHHhc
Confidence 99888877544457888877765
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.24 E-value=7.1e-12 Score=109.86 Aligned_cols=86 Identities=14% Similarity=0.044 Sum_probs=72.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..++... +.+|+++|+|+.|++.|+++.. ++.|+..|+.+++..+++||+|+
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~~~~~~fD~v~ 153 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-----------QVTFCVASSHRLPFSDTSMDAII 153 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTSCSBCTTCEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC-----------CcEEEEcchhhCCCCCCceeEEE
Confidence 46799999999999999999443 5689999999999999998752 57899999988866567999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++++ . .+++++.++|+||
T Consensus 154 ~~~~-------~--~~l~~~~~~L~pg 171 (269)
T 1p91_A 154 RIYA-------P--CKAEELARVVKPG 171 (269)
T ss_dssp EESC-------C--CCHHHHHHHEEEE
T ss_pred EeCC-------h--hhHHHHHHhcCCC
Confidence 8654 1 3688899999986
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.5e-12 Score=107.15 Aligned_cols=96 Identities=18% Similarity=0.097 Sum_probs=75.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-----CC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-----TG 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-----~~ 229 (262)
++.+|||+|||+|..+..|+... ..+|+++|+++.+++.|++++.... ...+++++++|+.++.+. .+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~ 132 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN-----LNDRVEVRTGLALDSLQQIENEKYE 132 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT-----CTTTEEEEESCHHHHHHHHHHTTCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEEcCHHHHHHHHHhcCCC
Confidence 46799999999999999999432 4589999999999999999986431 123589999998764221 15
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+||+|++... ......+|+.+.++|+||
T Consensus 133 ~fD~v~~d~~-----~~~~~~~l~~~~~~L~pg 160 (223)
T 3duw_A 133 PFDFIFIDAD-----KQNNPAYFEWALKLSRPG 160 (223)
T ss_dssp CCSEEEECSC-----GGGHHHHHHHHHHTCCTT
T ss_pred CcCEEEEcCC-----cHHHHHHHHHHHHhcCCC
Confidence 7999998654 223448999999999997
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.3e-12 Score=108.64 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=77.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++.... ...+++++..|+.+.+.+.++||+
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-----g~~~v~~~~~d~~~~~~~~~~~D~ 169 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFW-----QVENVRFHLGKLEEAELEEAAYDG 169 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC-----CCCCEEEEESCGGGCCCCTTCEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc-----CCCCEEEEECchhhcCCCCCCcCE
Confidence 457899999999999999999542 5689999999999999999875320 024789999999887444468999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++ +++++. .+++++.++|+||
T Consensus 170 v~~-----~~~~~~--~~l~~~~~~L~~g 191 (258)
T 2pwy_A 170 VAL-----DLMEPW--KVLEKAALALKPD 191 (258)
T ss_dssp EEE-----ESSCGG--GGHHHHHHHEEEE
T ss_pred EEE-----CCcCHH--HHHHHHHHhCCCC
Confidence 998 456666 8999999999986
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=108.65 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=75.3
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC---CCCcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRY 231 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~---~~~~y 231 (262)
++.+|||||||+|..+..|+... ..+|+++|+|+.+++.|++++.... ...+++++.+|+.++.+ ..++|
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g-----~~~~v~~~~~d~~~~l~~~~~~~~f 137 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG-----VDQRVTLREGPALQSLESLGECPAF 137 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT-----CTTTEEEEESCHHHHHHTCCSCCCC
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEEcCHHHHHHhcCCCCCe
Confidence 46799999999999999999432 4589999999999999999986531 12479999999876422 12489
Q ss_pred chhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|++... ......+|+++.++|+||
T Consensus 138 D~V~~d~~-----~~~~~~~l~~~~~~LkpG 163 (248)
T 3tfw_A 138 DLIFIDAD-----KPNNPHYLRWALRYSRPG 163 (248)
T ss_dssp SEEEECSC-----GGGHHHHHHHHHHTCCTT
T ss_pred EEEEECCc-----hHHHHHHHHHHHHhcCCC
Confidence 99998642 334457999999999997
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.9e-12 Score=109.15 Aligned_cols=95 Identities=13% Similarity=0.118 Sum_probs=74.9
Q ss_pred CceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCC-cceEEEEcCCCCCCCC--CCccc
Q 024811 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVPLQDFTPE--TGRYD 232 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~-~~v~f~~~d~~~~~~~--~~~yD 232 (262)
..+|||||||+|..+..|+... ..+|++||+|+.|++.|++++..+. .. .+++|+++|+.++.+. .++||
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-----~~~~~i~~~~gda~~~l~~~~~~~fD 131 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG-----YSPSRVRFLLSRPLDVMSRLANDSYQ 131 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT-----CCGGGEEEECSCHHHHGGGSCTTCEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCcCcEEEEEcCHHHHHHHhcCCCcC
Confidence 3489999999999999999543 4589999999999999999986531 12 4799999998776322 47899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++.... .....+++.+.++|+||
T Consensus 132 ~V~~d~~~-----~~~~~~l~~~~~~LkpG 156 (221)
T 3dr5_A 132 LVFGQVSP-----MDLKALVDAAWPLLRRG 156 (221)
T ss_dssp EEEECCCT-----TTHHHHHHHHHHHEEEE
T ss_pred eEEEcCcH-----HHHHHHHHHHHHHcCCC
Confidence 99986432 23347999999999996
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.24 E-value=7.3e-13 Score=109.28 Aligned_cols=82 Identities=6% Similarity=0.006 Sum_probs=70.1
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC---CCCc
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGR 230 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~---~~~~ 230 (262)
+.+++.+|||+|||. | .+|+|+.|++.|+++... +++|+++|++++++ ++++
T Consensus 9 g~~~g~~vL~~~~g~--------------v-~vD~s~~ml~~a~~~~~~----------~~~~~~~d~~~~~~~~~~~~~ 63 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS--------------S-PVEALKGLVDKLQALTGN----------EGRVSVENIKQLLQSAHKESS 63 (176)
T ss_dssp TCCTTSEEEEEECTT--------------S-CHHHHHHHHHHHHHHTTT----------TSEEEEEEGGGGGGGCCCSSC
T ss_pred CCCCCCEEEEecCCc--------------e-eeeCCHHHHHHHHHhccc----------CcEEEEechhcCccccCCCCC
Confidence 355788999999996 2 299999999999998631 47899999998865 5579
Q ss_pred cchhhhhhHHhhc-CchhHHHHHHHHHhhccCC
Q 024811 231 YDVIWVQWCIGHL-TDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~vl~hl-tD~el~~~l~~~~~~LkPG 262 (262)
||+|+|++++||+ +|.+ .+|++++++||||
T Consensus 64 fD~V~~~~~l~~~~~~~~--~~l~~~~r~Lkpg 94 (176)
T 2ld4_A 64 FDIILSGLVPGSTTLHSA--EILAEIARILRPG 94 (176)
T ss_dssp EEEEEECCSTTCCCCCCH--HHHHHHHHHEEEE
T ss_pred EeEEEECChhhhcccCHH--HHHHHHHHHCCCC
Confidence 9999999999999 7776 9999999999996
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=111.02 Aligned_cols=101 Identities=10% Similarity=0.087 Sum_probs=75.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC-cEEEEeC-CHHHHHHHHhhcccccccCCCCC----cceEEEEcCCCCCC--C--
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEP-VSHFLDAARESLAPENHMAPDMH----KATNFFCVPLQDFT--P-- 226 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~-~V~~VD~-s~~mld~Ar~~l~~a~~~~~~~~----~~v~f~~~d~~~~~--~-- 226 (262)
++.+|||+|||+|.++..++ ..+. +|+++|. |+.|++.|++++..-........ .++.+...++.+.. .
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a-~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAF-LAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHH-HTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred CCCeEEEecccccHHHHHHH-HcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 46799999999999999999 4444 8999999 89999999998721000000000 25788877765531 1
Q ss_pred --CCCccchhhhhhHHhhcCchhHHHHHHHHHhhcc
Q 024811 227 --ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHS 260 (262)
Q Consensus 227 --~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~Lk 260 (262)
..++||+|++..+++|..+.+ .+++.+.++|+
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~~~--~ll~~l~~~Lk 191 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQAHD--ALLRSVKMLLA 191 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGGHH--HHHHHHHHHBC
T ss_pred hccCCCCCEEEEeCcccChHHHH--HHHHHHHHHhc
Confidence 236899999999999977766 99999999999
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-12 Score=115.59 Aligned_cols=103 Identities=14% Similarity=0.154 Sum_probs=75.2
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~yD 232 (262)
++.+|||||||+|.++..++ +. ..+|++||+|+.+++.|++++...... ....+++++.+|+.++.. ..++||
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~-~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~~~~~~~~~fD 171 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVL-RHGTVEHCDLVDIDGEVMEQSKQHFPQISRS--LADPRATVRVGDGLAFVRQTPDNTYD 171 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHH-TCTTCCEEEEEESCHHHHHHHHHHCHHHHGG--GGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred CCCeEEEEcCCCCHHHHHHH-hCCCCCEEEEEECCHHHHHHHHHHhHHhhcc--cCCCcEEEEECcHHHHHHhccCCcee
Confidence 46799999999999999999 54 458999999999999999987321000 013478999999987642 246899
Q ss_pred hhhhhhHHhhcCchhH--HHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDF--VSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el--~~~l~~~~~~LkPG 262 (262)
+|++..+.++.++..+ .+++++++++|+||
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg 203 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPD 203 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEE
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCC
Confidence 9999876655554433 48999999999986
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-12 Score=111.20 Aligned_cols=101 Identities=12% Similarity=-0.034 Sum_probs=69.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC---CCC---CC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPE---TG 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~---~~~---~~ 229 (262)
++.+|||+|||+|.++..|+... ..+|+++|+|+.|++.|++++.... ...+++|+++|+.+. ... ++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN-----LSDLIKVVKVPQKTLLMDALKEESEI 139 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT-----CTTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC-----CCccEEEEEcchhhhhhhhhhcccCC
Confidence 46699999999999999999543 4689999999999999999986421 123589999997662 122 15
Q ss_pred ccchhhhhhHHhhcC-c------------hhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLT-D------------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hlt-D------------~el~~~l~~~~~~LkPG 262 (262)
+||+|+|+.++++.. + .....++..+.++|+||
T Consensus 140 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkpg 185 (254)
T 2h00_A 140 IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEG 185 (254)
T ss_dssp CBSEEEECCCCC-------------------------CTTTTHHHH
T ss_pred cccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecC
Confidence 899999997655443 1 01124667778888875
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.4e-12 Score=105.53 Aligned_cols=95 Identities=12% Similarity=0.138 Sum_probs=73.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC-CCCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~-~~~~~~yDl 233 (262)
++.+|||+|||+|..+..|+... ..+|+++|+|+.|++.|++++.... ...+++++.+|..++ +..++ ||+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~-fD~ 129 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG-----LIDRVELQVGDPLGIAAGQRD-IDI 129 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS-----GGGGEEEEESCHHHHHTTCCS-EEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC-----CCceEEEEEecHHHHhccCCC-CCE
Confidence 36799999999999999999332 4589999999999999999876431 123689999998765 22235 999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++... . .+...+++++.++|+||
T Consensus 130 v~~~~~---~--~~~~~~l~~~~~~Lkpg 153 (210)
T 3c3p_A 130 LFMDCD---V--FNGADVLERMNRCLAKN 153 (210)
T ss_dssp EEEETT---T--SCHHHHHHHHGGGEEEE
T ss_pred EEEcCC---h--hhhHHHHHHHHHhcCCC
Confidence 998732 2 23448999999999986
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=105.08 Aligned_cols=95 Identities=11% Similarity=-0.036 Sum_probs=74.2
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC---CCCC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~---~~~~ 229 (262)
..++.+|||+|||+|.++..|+...+ .+|+++|+|+.|++.+++++.. ..++.++++|+.+.. +..+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~--------~~~v~~~~~d~~~~~~~~~~~~ 142 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--------RRNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------CTTEEEEECCTTCGGGGTTTCC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc--------cCCCEEEEccCCCcchhhcccC
Confidence 34577999999999999999995532 5899999999999999998753 147899999998732 1235
Q ss_pred ccchhhhhhHHhhcCchhH-HHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDF-VSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el-~~~l~~~~~~LkPG 262 (262)
+||+|++..+ .++. ..++.++.+.|+||
T Consensus 143 ~~D~v~~~~~-----~~~~~~~~l~~~~~~Lkpg 171 (227)
T 1g8a_A 143 KVDVIFEDVA-----QPTQAKILIDNAEVYLKRG 171 (227)
T ss_dssp CEEEEEECCC-----STTHHHHHHHHHHHHEEEE
T ss_pred CceEEEECCC-----CHhHHHHHHHHHHHhcCCC
Confidence 8999997654 2322 25699999999996
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=116.14 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=78.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||||||+|.++...++....+|.+||.|+ |++.|++.+..- ....++.++.++++++..+ ++||+|||
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n-----~~~~~i~~i~~~~~~~~lp-e~~Dvivs 155 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFN-----GLEDRVHVLPGPVETVELP-EQVDAIVS 155 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHT-----TCTTTEEEEESCTTTCCCS-SCEEEEEC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHc-----CCCceEEEEeeeeeeecCC-ccccEEEe
Confidence 4678999999999999988843346899999996 899999877531 2235799999999999765 69999999
Q ss_pred hhHHhhcCch-hHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDD-DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~-el~~~l~~~~~~LkPG 262 (262)
.|.-..+-.+ .+..++....+.|+||
T Consensus 156 E~~~~~l~~e~~l~~~l~a~~r~Lkp~ 182 (376)
T 4hc4_A 156 EWMGYGLLHESMLSSVLHARTKWLKEG 182 (376)
T ss_dssp CCCBTTBTTTCSHHHHHHHHHHHEEEE
T ss_pred ecccccccccchhhhHHHHHHhhCCCC
Confidence 7764555444 4558999999999986
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-12 Score=108.87 Aligned_cols=98 Identities=19% Similarity=0.160 Sum_probs=74.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC------CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~------~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~---- 225 (262)
.++.+|||+|||+|.++..|+.... .+|+++|+|+.+++.|++++...... .....+++++.+|+.+..
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPE-LLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGG-GGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcc-ccccCCEEEEECChHhcccccC
Confidence 3578999999999999999994433 38999999999999999987643100 000247899999998754
Q ss_pred CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 ~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..++||+|++..+++|+. +.+.+.|+||
T Consensus 158 ~~~~~fD~I~~~~~~~~~~--------~~~~~~Lkpg 186 (227)
T 2pbf_A 158 KELGLFDAIHVGASASELP--------EILVDLLAEN 186 (227)
T ss_dssp HHHCCEEEEEECSBBSSCC--------HHHHHHEEEE
T ss_pred ccCCCcCEEEECCchHHHH--------HHHHHhcCCC
Confidence 3346899999998887763 5677788875
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=5.4e-12 Score=107.64 Aligned_cols=96 Identities=13% Similarity=0.096 Sum_probs=74.5
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-C-----
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-T----- 228 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~----- 228 (262)
++.+|||+|||+|..+..|+... ..+|+++|+|+.|++.|++++.... ...+++|+++|+.++.+. .
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~ 138 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG-----LSDKIGLRLSPAKDTLAELIHAGQA 138 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT-----CTTTEEEEESCHHHHHHHHHTTTCT
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCceEEEeCCHHHHHHHhhhccCC
Confidence 46799999999999999999432 4689999999999999999986531 123589999998665221 1
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++||+|++... ..+...+++.+.++|+||
T Consensus 139 ~~fD~v~~~~~-----~~~~~~~l~~~~~~L~pg 167 (225)
T 3tr6_A 139 WQYDLIYIDAD-----KANTDLYYEESLKLLREG 167 (225)
T ss_dssp TCEEEEEECSC-----GGGHHHHHHHHHHHEEEE
T ss_pred CCccEEEECCC-----HHHHHHHHHHHHHhcCCC
Confidence 58999996542 233458999999999996
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=107.60 Aligned_cols=101 Identities=12% Similarity=0.162 Sum_probs=73.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCC--CCcceEEEEcCCCCC-C--CCCCc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPD--MHKATNFFCVPLQDF-T--PETGR 230 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~--~~~~v~f~~~d~~~~-~--~~~~~ 230 (262)
++.+|||||||+|.++..++... ..+|++||+|+.|++.|++++......... ...++.++++|+.++ + .+.+.
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 46799999999999999999443 236999999999999999987532110000 224799999999873 2 23468
Q ss_pred cchhhhhhHHhhcCchhH-----------HHHHHHHHhhccCC
Q 024811 231 YDVIWVQWCIGHLTDDDF-----------VSFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~vl~hltD~el-----------~~~l~~~~~~LkPG 262 (262)
+|.|++. ++|+.. ..++.++.++|+||
T Consensus 129 ~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkpg 166 (246)
T 2vdv_E 129 LSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEG 166 (246)
T ss_dssp EEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEE
T ss_pred cCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCC
Confidence 8888744 344421 37999999999986
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.6e-12 Score=107.76 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=76.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-C--CCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-E--TGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~--~~~yD 232 (262)
++.+|||+|||+|..+..|+... ..+|+++|+|+.+++.|++++.... ...+++++.+|+.++.+ . .++||
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~fD 128 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG-----LESRIELLFGDALQLGEKLELYPLFD 128 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT-----CTTTEEEECSCGGGSHHHHTTSCCEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEECCHHHHHHhcccCCCcc
Confidence 46799999999999999999443 4689999999999999999986431 12368999999887522 1 36899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++..+.+ +...+++.+.+.|+||
T Consensus 129 ~I~~~~~~~-----~~~~~l~~~~~~L~pg 153 (233)
T 2gpy_A 129 VLFIDAAKG-----QYRRFFDMYSPMVRPG 153 (233)
T ss_dssp EEEEEGGGS-----CHHHHHHHHGGGEEEE
T ss_pred EEEECCCHH-----HHHHHHHHHHHHcCCC
Confidence 999987643 3448999999999986
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.3e-12 Score=111.34 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=75.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++ +.+.+|+++|+|+.+++.|++++... ... ++++.+|+.+..+ .++||+|++
T Consensus 120 ~~~~VLDiGcG~G~l~~~la-~~g~~v~gvDi~~~~v~~a~~n~~~~------~~~-v~~~~~d~~~~~~-~~~fD~Vv~ 190 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAE-KLGGKALGVDIDPMVLPQAEANAKRN------GVR-PRFLEGSLEAALP-FGPFDLLVA 190 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHH-HTTCEEEEEESCGGGHHHHHHHHHHT------TCC-CEEEESCHHHHGG-GCCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHH-HhCCeEEEEECCHHHHHHHHHHHHHc------CCc-EEEEECChhhcCc-CCCCCEEEE
Confidence 46799999999999999999 55669999999999999999987532 112 7899998876422 368999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+...++ +..++..+.+.|+||
T Consensus 191 n~~~~~-----~~~~l~~~~~~Lkpg 211 (254)
T 2nxc_A 191 NLYAEL-----HAALAPRYREALVPG 211 (254)
T ss_dssp ECCHHH-----HHHHHHHHHHHEEEE
T ss_pred CCcHHH-----HHHHHHHHHHHcCCC
Confidence 876654 348999999999986
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-12 Score=109.13 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=72.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..|+.....+|+++|+|+.+++.|++++... ...+++++.+|+..-.+...+||+|+
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~fD~Ii 163 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERA------GVKNVHVILGDGSKGFPPKAPYDVII 163 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc------CCCCcEEEECCcccCCCCCCCccEEE
Confidence 357799999999999999999443378999999999999999987643 22358999999732212224699999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..+++|+.+ ++.+.|+||
T Consensus 164 ~~~~~~~~~~--------~~~~~L~pg 182 (235)
T 1jg1_A 164 VTAGAPKIPE--------PLIEQLKIG 182 (235)
T ss_dssp ECSBBSSCCH--------HHHHTEEEE
T ss_pred ECCcHHHHHH--------HHHHhcCCC
Confidence 9999888874 467788875
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-11 Score=103.93 Aligned_cols=94 Identities=22% Similarity=0.336 Sum_probs=77.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++.... ...+++++..|+.+..+..+.||+|+
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~D~v~ 163 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFN-----LGKNVKFFNVDFKDAEVPEGIFHAAF 163 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTT-----CCTTEEEECSCTTTSCCCTTCBSEEE
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcC-----CCCcEEEEEcChhhcccCCCcccEEE
Confidence 35779999999999999999955 7899999999999999999875421 12478999999988752346899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+ +.+++. .+++++.++|+||
T Consensus 164 ~-----~~~~~~--~~l~~~~~~L~~g 183 (248)
T 2yvl_A 164 V-----DVREPW--HYLEKVHKSLMEG 183 (248)
T ss_dssp E-----CSSCGG--GGHHHHHHHBCTT
T ss_pred E-----CCcCHH--HHHHHHHHHcCCC
Confidence 7 345665 8999999999997
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-11 Score=114.23 Aligned_cols=101 Identities=16% Similarity=0.043 Sum_probs=79.6
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..++... ..+|.++|+|+.|++.|++++..+ ...+++|+++|+.++++....||+
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~------g~~~i~~~~~D~~~~~~~~~~~D~ 275 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALAS------GLSWIRFLRADARHLPRFFPEVDR 275 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHT------TCTTCEEEECCGGGGGGTCCCCSE
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHc------CCCceEEEeCChhhCccccCCCCE
Confidence 356799999999999999999433 268999999999999999998754 122789999999998765567999
Q ss_pred hhhhhHHhhcCc--hh----HHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTD--DD----FVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD--~e----l~~~l~~~~~~LkPG 262 (262)
|+++.+++.... .+ ...+++.+.+.|+||
T Consensus 276 Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkpg 310 (354)
T 3tma_A 276 ILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPG 310 (354)
T ss_dssp EEECCCSCC----CHHHHHHHHHHHHHHHHTSCTT
T ss_pred EEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCC
Confidence 999876543221 11 247999999999986
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.8e-12 Score=111.91 Aligned_cols=94 Identities=15% Similarity=0.050 Sum_probs=76.1
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
.++.+|||+|||+|.++..++... ..+|+++|.|+.|++.|++++... ...++.|+++|+.++ +..++||+|
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n------~l~~~~~~~~d~~~~-~~~~~~D~V 190 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLN------KLNNVIPILADNRDV-ELKDVADRV 190 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHT------TCSSEEEEESCGGGC-CCTTCEEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCEEEEECChHHc-CccCCceEE
Confidence 357799999999999999999442 238999999999999999998542 234688999999988 434689999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++..+. +.. .++..+.+.|+||
T Consensus 191 i~d~p~----~~~--~~l~~~~~~Lkpg 212 (272)
T 3a27_A 191 IMGYVH----KTH--KFLDKTFEFLKDR 212 (272)
T ss_dssp EECCCS----SGG--GGHHHHHHHEEEE
T ss_pred EECCcc----cHH--HHHHHHHHHcCCC
Confidence 998653 333 7889999999986
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=109.20 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=77.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccc-cccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a-~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
.++.+|||+|||+|.++..|+... ..+|+++|+|+.+++.|++++... .. ...+++++.+|+.+...+.++||
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~----~~~~v~~~~~d~~~~~~~~~~~D 173 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ----PPDNWRLVVSDLADSELPDGSVD 173 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS----CCTTEEEECSCGGGCCCCTTCEE
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC----CCCcEEEEECchHhcCCCCCcee
Confidence 457799999999999999999543 468999999999999999987532 10 12478999999988755456899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++ +++++. .+++++.++|+||
T Consensus 174 ~v~~-----~~~~~~--~~l~~~~~~L~pg 196 (280)
T 1i9g_A 174 RAVL-----DMLAPW--EVLDAVSRLLVAG 196 (280)
T ss_dssp EEEE-----ESSCGG--GGHHHHHHHEEEE
T ss_pred EEEE-----CCcCHH--HHHHHHHHhCCCC
Confidence 9998 556776 8999999999986
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=8.2e-12 Score=114.85 Aligned_cols=88 Identities=17% Similarity=0.319 Sum_probs=74.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
...+|||||||+|.++..|+ +.++ +++++|+ +.|++.|++. .+++|+.+|+.+ +.+ .||+|
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~~-~~~--~~D~v 255 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIH-EIFPHLKCTVFDQ-PQVVGNLTGN------------ENLNFVGGDMFK-SIP--SADAV 255 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHH-HHCTTSEEEEEEC-HHHHSSCCCC------------SSEEEEECCTTT-CCC--CCSEE
T ss_pred CCCEEEEECCCcCHHHHHHH-HHCCCCeEEEecc-HHHHhhcccC------------CCcEEEeCccCC-CCC--CceEE
Confidence 35799999999999999999 4444 6788899 7888766541 258999999987 333 49999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
++++++||++|++...+|++++++|+|
T Consensus 256 ~~~~vlh~~~d~~~~~~l~~~~~~L~p 282 (358)
T 1zg3_A 256 LLKWVLHDWNDEQSLKILKNSKEAISH 282 (358)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHTGG
T ss_pred EEcccccCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999988999999999999
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.1e-12 Score=109.19 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=74.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC-------CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET 228 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~-------~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~ 228 (262)
.++.+|||+|||+|.++..|+.... .+|+++|+++.+++.|++++...... .....++.++.+|+.+..+..
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS-MLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH-HHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcc-ccCCCceEEEECCcccCCCcC
Confidence 3577999999999999999995443 38999999999999999987542100 000236899999987733333
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++||+|++..+++|+. +++.+.|+||
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkpg 187 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASG 187 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCC
Confidence 6899999999888876 4577888875
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-11 Score=109.73 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=62.9
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.+|..|+ +.+.+|++||+|+.|++.+++++.... ...+++++++|+.+++.+ .||+|+
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~-~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~v~~~~~D~~~~~~~--~fD~vv 98 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLL-EKAKKVVACELDPRLVAELHKRVQGTP-----VASKLQVLVGDVLKTDLP--FFDTCV 98 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHH-HHSSEEEEEESCHHHHHHHHHHHTTST-----TGGGEEEEESCTTTSCCC--CCSEEE
T ss_pred CCCCEEEEEcCcccHHHHHHH-hhCCEEEEEECCHHHHHHHHHHHHhcC-----CCCceEEEEcceecccch--hhcEEE
Confidence 357799999999999999999 557799999999999999999875321 124789999999987653 799999
Q ss_pred hhhH
Q 024811 236 VQWC 239 (262)
Q Consensus 236 s~~v 239 (262)
++.+
T Consensus 99 ~nlp 102 (285)
T 1zq9_A 99 ANLP 102 (285)
T ss_dssp EECC
T ss_pred EecC
Confidence 9754
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-12 Score=102.75 Aligned_cols=89 Identities=7% Similarity=0.037 Sum_probs=71.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--------C
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--------P 226 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--------~ 226 (262)
++.+|||+|||+|.++..++... ..+|+++|+|+ |++. .+++++++|+.+.+ .
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~ 84 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------------VGVDFLQGDFRDELVMKALLERV 84 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------------TTEEEEESCTTSHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------------CcEEEEEcccccchhhhhhhccC
Confidence 56799999999999999999553 36899999999 7532 26789999998864 3
Q ss_pred CCCccchhhhhhHHhhcCchhH---------HHHHHHHHhhccCC
Q 024811 227 ETGRYDVIWVQWCIGHLTDDDF---------VSFFKRAKVNHSQT 262 (262)
Q Consensus 227 ~~~~yDlI~s~~vl~hltD~el---------~~~l~~~~~~LkPG 262 (262)
++++||+|+++.+++++.+... ..+++++.++|+||
T Consensus 85 ~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g 129 (180)
T 1ej0_A 85 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG 129 (180)
T ss_dssp TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC
Confidence 3468999999988887766511 38999999999986
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-11 Score=111.41 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=83.4
Q ss_pred hHHHHHHHHhhccCCCccCCCCceeeEeeccc--cHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCc
Q 024811 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGI--GRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (262)
Q Consensus 137 ~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGt--G~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~ 212 (262)
..+.|+..... .+. ......+|||||||+ +..+..++.+. ..+|++||.|+.|++.|++++... ...
T Consensus 61 ~nr~fl~rav~-~l~--~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~------~~~ 131 (277)
T 3giw_A 61 ANRDWMNRAVA-HLA--KEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST------PEG 131 (277)
T ss_dssp HHHHHHHHHHH-HHH--HTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC------SSS
T ss_pred HHHHHHHHHHH-Hhc--cccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC------CCC
Confidence 45677776543 111 001235899999997 43445555343 358999999999999999988542 123
Q ss_pred ceEEEEcCCCCCCC----C--CCccc-----hhhhhhHHhhcCchh-HHHHHHHHHhhccCC
Q 024811 213 ATNFFCVPLQDFTP----E--TGRYD-----VIWVQWCIGHLTDDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 213 ~v~f~~~d~~~~~~----~--~~~yD-----lI~s~~vl~hltD~e-l~~~l~~~~~~LkPG 262 (262)
+++|+++|+.++.. . .+.|| +|+++.+|||++|.+ ...+|+++.+.|+||
T Consensus 132 ~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PG 193 (277)
T 3giw_A 132 RTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSG 193 (277)
T ss_dssp EEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTT
T ss_pred cEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCC
Confidence 68999999998521 0 13466 488899999999975 458999999999998
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-11 Score=109.97 Aligned_cols=93 Identities=13% Similarity=0.020 Sum_probs=75.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+.+|||||||+|.++..+++. ..+|++||+++.|++.|++++...... -..++++++.+|..++. ++||+|++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~--~~~~rv~~~~~D~~~~~---~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEV--KNNKNFTHAKQLLDLDI---KKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHH--HTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccc--cCCCeEEEEechHHHHH---hhCCEEEE
Confidence 4579999999999999999955 578999999999999999987431000 01247899999998874 58999998
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
. .+|+. .|++.+++.|+||
T Consensus 146 d-----~~dp~--~~~~~~~~~L~pg 164 (262)
T 2cmg_A 146 L-----QEPDI--HRIDGLKRMLKED 164 (262)
T ss_dssp S-----SCCCH--HHHHHHHTTEEEE
T ss_pred C-----CCChH--HHHHHHHHhcCCC
Confidence 6 46776 6999999999996
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-11 Score=116.03 Aligned_cols=101 Identities=14% Similarity=0.015 Sum_probs=73.5
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHH-------HhhcccccccCCCCCcceEEEEcCCC-C--
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAA-------RESLAPENHMAPDMHKATNFFCVPLQ-D-- 223 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~A-------r~~l~~a~~~~~~~~~~v~f~~~d~~-~-- 223 (262)
..++.+|||+|||+|.++..|+.... .+|++||.|+.+++.| ++++.... ....+++|+++|.. +
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G----l~~~nV~~i~gD~~~~~~ 315 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG----MRLNNVEFSLKKSFVDNN 315 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT----BCCCCEEEEESSCSTTCH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC----CCCCceEEEEcCcccccc
Confidence 34678999999999999999995433 4799999999999999 55543210 00247889887543 2
Q ss_pred -CCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 224 -FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 224 -~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+....++||+|+++.++ +. +++..+|+++.+.|+||
T Consensus 316 ~~~~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpG 352 (433)
T 1u2z_A 316 RVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVG 352 (433)
T ss_dssp HHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTT
T ss_pred ccccccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCC
Confidence 11113689999988665 33 44558999999999997
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-11 Score=113.03 Aligned_cols=101 Identities=14% Similarity=0.050 Sum_probs=76.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC----CCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~----~~~yD 232 (262)
++.+|||+|||+|.++..++ ..+.+|++||.|+.|++.|++++....- ...+++|+++|+.++.+. .++||
T Consensus 153 ~~~~VLDlgcGtG~~sl~la-~~ga~V~~VD~s~~al~~a~~n~~~~gl----~~~~v~~i~~D~~~~l~~~~~~~~~fD 227 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAA-AAGAEVTHVDASKKAIGWAKENQVLAGL----EQAPIRWICEDAMKFIQREERRGSTYD 227 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHTC----TTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred CCCcEEEcccccCHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHHcCC----CccceEEEECcHHHHHHHHHhcCCCce
Confidence 46799999999999999999 4556999999999999999999864210 111489999999876431 35899
Q ss_pred hhhhhhHHhhcC--------chhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLT--------DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hlt--------D~el~~~l~~~~~~LkPG 262 (262)
+|+++.+..... ..+...+++.+.++|+||
T Consensus 228 ~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkpg 265 (332)
T 2igt_A 228 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK 265 (332)
T ss_dssp EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT
T ss_pred EEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 999975421111 123458999999999997
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-11 Score=104.91 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=73.9
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|..+..|+.... .+|+++|+|+.+++.|++++...... .....++.++.+|+.+..+..++||+
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT-LLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-HHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc-ccCCCcEEEEECCcccCcccCCCcCE
Confidence 3578999999999999999995433 48999999999999999987542100 00023689999998765444468999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++..+++|+. +++.+.|+||
T Consensus 155 i~~~~~~~~~~--------~~~~~~Lkpg 175 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPG 175 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEE
T ss_pred EEECCchHHHH--------HHHHHhcCCC
Confidence 99988776654 4677888885
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-11 Score=107.13 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=75.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-------C
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------E 227 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-------~ 227 (262)
++.+|||+|||+|..+..|+... ..+|+++|+|+.|++.|++++..+. ...+++++.+|..++.+ .
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g-----~~~~i~~~~gda~~~l~~l~~~~~~ 153 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-----VDHKIDFREGPALPVLDEMIKDEKN 153 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT-----CGGGEEEEESCHHHHHHHHHHSGGG
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCCeEEEECCHHHHHHHHHhccCC
Confidence 46799999999999999999543 4589999999999999999986531 22478999999876522 1
Q ss_pred CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 228 ~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++||+|++... ......+++.+.++|+||
T Consensus 154 ~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpG 183 (247)
T 1sui_A 154 HGSYDFIFVDAD-----KDNYLNYHKRLIDLVKVG 183 (247)
T ss_dssp TTCBSEEEECSC-----STTHHHHHHHHHHHBCTT
T ss_pred CCCEEEEEEcCc-----hHHHHHHHHHHHHhCCCC
Confidence 368999998643 223458999999999997
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=3e-12 Score=112.33 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=81.0
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
..+|..++.. .++.+|||+|||+|..+..|+... ..+|++||+|+.|++.|++++..+. ...++++
T Consensus 49 ~~~l~~l~~~-------~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-----~~~~i~~ 116 (242)
T 3r3h_A 49 AQFMQMLIRL-------TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK-----QEHKIKL 116 (242)
T ss_dssp HHHHHHHHHH-------HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT-----CTTTEEE
T ss_pred HHHHHHHHhh-------cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEE
Confidence 4556555431 146799999999999999999432 3589999999999999999986531 2247999
Q ss_pred EEcCCCCCCCC------CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 217 FCVPLQDFTPE------TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 217 ~~~d~~~~~~~------~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+|+.++.+. .++||+|++... ......+++++.++|+||
T Consensus 117 ~~gda~~~l~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpG 163 (242)
T 3r3h_A 117 RLGPALDTLHSLLNEGGEHQFDFIFIDAD-----KTNYLNYYELALKLVTPK 163 (242)
T ss_dssp EESCHHHHHHHHHHHHCSSCEEEEEEESC-----GGGHHHHHHHHHHHEEEE
T ss_pred EEcCHHHHHHHHhhccCCCCEeEEEEcCC-----hHHhHHHHHHHHHhcCCC
Confidence 99998775332 368999998643 234457999999999997
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-11 Score=113.36 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=75.7
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yD 232 (262)
.+.+|||||||+|.++..|+ +. ..+|++||+|+.|++.|++++...... -...+++++.+|+.++. ...++||
T Consensus 120 ~~~~VLdIG~G~G~~a~~la-~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~g--l~~~rv~~~~~D~~~~l~~~~~~~fD 196 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVA-RHASIEQIDMCEIDKMVVDVSKQFFPDVAIG--YEDPRVNLVIGDGVAFLKNAAEGSYD 196 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHT-TCTTCCEEEEEESCHHHHHHHHHHCHHHHGG--GGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCEEEEECCCccHHHHHHH-HcCCCCEEEEEECCHHHHHHHHHHHHhhccc--cCCCcEEEEECCHHHHHHhccCCCcc
Confidence 46799999999999999999 54 468999999999999999987531000 01247899999987652 1236899
Q ss_pred hhhhhhH--HhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWC--IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~v--l~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++... +++..+.....+++.+.++|+||
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg 228 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPG 228 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCC
Confidence 9998753 22211111248999999999986
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-11 Score=112.38 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=75.1
Q ss_pred ceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccchhh
Q 024811 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yDlI~ 235 (262)
.+|||||||+|.++..|++.+ ..+|++||+++.|++.|++++... ...+++++.+|..++. ...++||+|+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~------~~~rv~v~~~Da~~~l~~~~~~~fDvIi 164 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP------RAPRVKIRVDDARMVAESFTPASRDVII 164 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC------CTTTEEEEESCHHHHHHTCCTTCEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc------CCCceEEEECcHHHHHhhccCCCCCEEE
Confidence 489999999999999999533 448999999999999999998532 2357999999987762 2236899999
Q ss_pred hhhHHhhcCchhH--HHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDF--VSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el--~~~l~~~~~~LkPG 262 (262)
+....+.-....+ .+|++.|+++|+||
T Consensus 165 ~D~~~~~~~~~~L~t~efl~~~~r~Lkpg 193 (317)
T 3gjy_A 165 RDVFAGAITPQNFTTVEFFEHCHRGLAPG 193 (317)
T ss_dssp ECCSTTSCCCGGGSBHHHHHHHHHHEEEE
T ss_pred ECCCCccccchhhhHHHHHHHHHHhcCCC
Confidence 8743332222211 37999999999986
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-11 Score=106.05 Aligned_cols=96 Identities=5% Similarity=0.022 Sum_probs=74.4
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--------
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-------- 226 (262)
++.+|||+|||+|..+..|+... ..+|+++|+++.+++.|++++.... ...+++++.+|+.+..+
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-----~~~~v~~~~~d~~~~~~~~~~~~~~ 134 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG-----LENKIFLKLGSALETLQVLIDSKSA 134 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT-----CGGGEEEEESCHHHHHHHHHHCSSC
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCCEEEEECCHHHHHHHHHhhccc
Confidence 46799999999999999999543 4689999999999999999985431 12358999998765311
Q ss_pred -------C-C-CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 227 -------E-T-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 227 -------~-~-~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+ . ++||+|++... .+....+|+++.+.|+||
T Consensus 135 ~~~~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~pg 174 (239)
T 2hnk_A 135 PSWASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKPG 174 (239)
T ss_dssp CGGGTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEE
T ss_pred ccccccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCCC
Confidence 1 1 58999998753 233448999999999986
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.3e-11 Score=106.10 Aligned_cols=99 Identities=12% Similarity=0.022 Sum_probs=74.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCcc---ch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY---DV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~y---Dl 233 (262)
++.+|||+|||+|.++..|+.....+|+++|+|+.+++.|++++.... ...+++|+++|+.+..+ ++| |+
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~-----l~~~v~~~~~D~~~~~~--~~f~~~D~ 195 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHG-----VSDRFFVRKGEFLEPFK--EKFASIEM 195 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTT-----CTTSEEEEESSTTGGGG--GGTTTCCE
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCceEEEECcchhhcc--cccCCCCE
Confidence 356899999999999999994425689999999999999999986421 11248999999987533 479 99
Q ss_pred hhhhhHHh-----------hcCch------hHHHHHHHHH-hhccCC
Q 024811 234 IWVQWCIG-----------HLTDD------DFVSFFKRAK-VNHSQT 262 (262)
Q Consensus 234 I~s~~vl~-----------hltD~------el~~~l~~~~-~~LkPG 262 (262)
|+|+.+.. |-+.. +-..+++++. +.|+||
T Consensus 196 IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pg 242 (284)
T 1nv8_A 196 ILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSG 242 (284)
T ss_dssp EEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTT
T ss_pred EEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCC
Confidence 99984321 21111 1127899999 999986
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-11 Score=105.45 Aligned_cols=90 Identities=9% Similarity=-0.076 Sum_probs=70.8
Q ss_pred CCceeeEeeccccHHHHHHHHh-----cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC---CC-C
Q 024811 157 QHLVALDCGSGIGRITKNLLIR-----YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TP-E 227 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~-----~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~---~~-~ 227 (262)
++.+|||||||+|..+..|+.. ...+|++||+|+.|++.|+. + ..+++|+++|+.++ +. .
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~----------~~~v~~~~gD~~~~~~l~~~~ 149 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D----------MENITLHQGDCSDLTTFEHLR 149 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G----------CTTEEEEECCSSCSGGGGGGS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c----------CCceEEEECcchhHHHHHhhc
Confidence 3579999999999999999944 14689999999999988872 1 13789999999885 32 2
Q ss_pred CCccchhhhhhHHhhcCchhHHHHHHHHHh-hccCC
Q 024811 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKV-NHSQT 262 (262)
Q Consensus 228 ~~~yDlI~s~~vl~hltD~el~~~l~~~~~-~LkPG 262 (262)
..+||+|++... |. +...+|.++.+ .|+||
T Consensus 150 ~~~fD~I~~d~~--~~---~~~~~l~~~~r~~LkpG 180 (236)
T 2bm8_A 150 EMAHPLIFIDNA--HA---NTFNIMKWAVDHLLEEG 180 (236)
T ss_dssp SSCSSEEEEESS--CS---SHHHHHHHHHHHTCCTT
T ss_pred cCCCCEEEECCc--hH---hHHHHHHHHHHhhCCCC
Confidence 237999998654 42 34589999997 99997
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-11 Score=111.21 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=73.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDl 233 (262)
.+.+|||||||+|.++..++ +.. .+|++||+++.|++.|++++...... -...+++++.+|..++. ...++||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~-~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~--~~~~rv~v~~~Da~~~l~~~~~~fD~ 171 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVV-KHPSVESVVQCEIDEDVIQVSKKFLPGMAIG--YSSSKLTLHVGDGFEFMKQNQDAFDV 171 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHT-TCTTCCEEEEEESCHHHHHHHHHHCHHHHGG--GGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred CCCEEEEECCCchHHHHHHH-HcCCCCEEEEEECCHHHHHHHHHHhHHhhcc--cCCCcEEEEECcHHHHHhhCCCCceE
Confidence 46799999999999999999 543 68999999999999999987531000 01247899999987642 22368999
Q ss_pred hhhhhHHhhcCchh--HHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDD--FVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~e--l~~~l~~~~~~LkPG 262 (262)
|++....+.-+... ..++++++.++|+||
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg 202 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKED 202 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEE
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCCC
Confidence 99875433222211 137999999999986
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=9.1e-12 Score=111.68 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=74.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccC-----CCCCcceEEEEcCCCCCCCCCCcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA-----PDMHKATNFFCVPLQDFTPETGRY 231 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~-----~~~~~~v~f~~~d~~~~~~~~~~y 231 (262)
.+.+|||+|||+|.++..+++....+|++||+++.+++.|++++ ...... +....+++++.+|..++....++|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 46799999999999999999442458999999999999999987 320000 001357899999986642113689
Q ss_pred chhhhhhHHhhcCchhH--HHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDF--VSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el--~~~l~~~~~~LkPG 262 (262)
|+|++....+.-+...+ .++++.+.+.|+||
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg 186 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP 186 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence 99998764322122222 47999999999986
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-11 Score=110.84 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=77.5
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
++.+|||+|||+|.++..+++.. ..+|++||+++.+++.|++++...... -..++++++.+|+.++.. ..++||+|
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG--YEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG--GGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccc--cCCCcEEEEECChHHHHHhCCCCceEE
Confidence 46799999999999999999332 468999999999999999987532100 013578999999877532 13689999
Q ss_pred hhhhHHhhcCchhH--HHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDF--VSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el--~~~l~~~~~~LkPG 262 (262)
++....++.+...+ .++++.+++.|+||
T Consensus 156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pg 185 (283)
T 2i7c_A 156 IVDSSDPIGPAETLFNQNFYEKIYNALKPN 185 (283)
T ss_dssp EEECCCTTTGGGGGSSHHHHHHHHHHEEEE
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence 99654333333333 48999999999986
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-11 Score=105.87 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=76.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++.... ...+++++.+|+.+..+ .++||+
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~-~~~~D~ 184 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG-----LIERVTIKVRDISEGFD-EKDVDA 184 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT-----CGGGEEEECCCGGGCCS-CCSEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-----CCCCEEEEECCHHHccc-CCccCE
Confidence 357799999999999999999553 4589999999999999999875421 12478999999987733 368999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+++ .+++. .+++++.++|+||
T Consensus 185 V~~~-----~~~~~--~~l~~~~~~L~pg 206 (277)
T 1o54_A 185 LFLD-----VPDPW--NYIDKCWEALKGG 206 (277)
T ss_dssp EEEC-----CSCGG--GTHHHHHHHEEEE
T ss_pred EEEC-----CcCHH--HHHHHHHHHcCCC
Confidence 9983 45665 8999999999986
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.6e-11 Score=109.58 Aligned_cols=96 Identities=8% Similarity=0.058 Sum_probs=76.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC-CCC-CCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTP-ETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~-~~~-~~~~yDl 233 (262)
++.+|||+| |+|.++..++.... .+|+++|+|+.|++.|++++... ...+++|+++|+.+ ++. ..++||+
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~------g~~~v~~~~~D~~~~l~~~~~~~fD~ 244 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI------GYEDIEIFTFDLRKPLPDYALHKFDT 244 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH------TCCCEEEECCCTTSCCCTTTSSCBSE
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCEEEEEChhhhhchhhccCCccE
Confidence 467999999 99999999994432 58999999999999999998643 12268999999998 532 2358999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+++.++++.. ...+++++.++|+||
T Consensus 245 Vi~~~p~~~~~---~~~~l~~~~~~Lkpg 270 (373)
T 2qm3_A 245 FITDPPETLEA---IRAFVGRGIATLKGP 270 (373)
T ss_dssp EEECCCSSHHH---HHHHHHHHHHTBCST
T ss_pred EEECCCCchHH---HHHHHHHHHHHcccC
Confidence 99997655442 358999999999996
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-11 Score=108.11 Aligned_cols=93 Identities=17% Similarity=0.045 Sum_probs=64.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEE-cCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~-~d~~~~~~~~~~yDlI~ 235 (262)
.+.+|||+|||||.++..|+.....+|++||+|+.|++.|+++....... ...++.+.. .++....++...||+++
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~D~v~ 113 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVM---EQFNFRNAVLADFEQGRPSFTSIDVSF 113 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEE---CSCCGGGCCGGGCCSCCCSEEEECCSS
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcccccc---ccceEEEeCHhHcCcCCCCEEEEEEEh
Confidence 35699999999999999999443359999999999999988764321000 011233333 33332112335788887
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++. . .+|.++.++|+||
T Consensus 114 ~~l--------~--~~l~~i~rvLkpg 130 (232)
T 3opn_A 114 ISL--------D--LILPPLYEILEKN 130 (232)
T ss_dssp SCG--------G--GTHHHHHHHSCTT
T ss_pred hhH--------H--HHHHHHHHhccCC
Confidence 764 3 7999999999997
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.8e-11 Score=107.49 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=65.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.+|..|+ +.+.+|++||+|+.|++.|++++... ...+++++++|+.++++ .+||+|+
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La-~~~~~v~~vDi~~~~~~~a~~~~~~~------~~~~v~~~~~D~~~~~~--~~~D~Vv 111 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLL-PLAKKVITIDIDSRMISEVKKRCLYE------GYNNLEVYEGDAIKTVF--PKFDVCT 111 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHT-TTSSEEEEECSCHHHHHHHHHHHHHT------TCCCEEC----CCSSCC--CCCSEEE
T ss_pred CCcCEEEEEcCcCcHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEECchhhCCc--ccCCEEE
Confidence 357799999999999999999 66789999999999999999987532 12478999999998865 3899999
Q ss_pred hhhHHhhcCchhHHHHH
Q 024811 236 VQWCIGHLTDDDFVSFF 252 (262)
Q Consensus 236 s~~vl~hltD~el~~~l 252 (262)
++.+.+ .+.+.+..++
T Consensus 112 ~n~py~-~~~~~~~~ll 127 (299)
T 2h1r_A 112 ANIPYK-ISSPLIFKLI 127 (299)
T ss_dssp EECCGG-GHHHHHHHHH
T ss_pred EcCCcc-cccHHHHHHH
Confidence 986643 4445444555
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-11 Score=111.86 Aligned_cols=105 Identities=12% Similarity=0.153 Sum_probs=76.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI 234 (262)
.+.+|||||||+|.++..+++.. ..+|++||+++.|++.|++++..... ..-...+++++.+|+.++. ...++||+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~-~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc-ccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 46799999999999999999432 46899999999999999998753100 0001347899999987752 123689999
Q ss_pred hhhhHHhh---cCchh--HHHHHHHHHhhccCC
Q 024811 235 WVQWCIGH---LTDDD--FVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~h---ltD~e--l~~~l~~~~~~LkPG 262 (262)
++....++ -+... ..++++.++++|+||
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkpg 188 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG 188 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCC
Confidence 99865433 11111 248999999999986
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-11 Score=103.99 Aligned_cols=96 Identities=18% Similarity=0.135 Sum_probs=74.4
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC---C---
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---T--- 228 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~---~--- 228 (262)
++.+|||+|||+|..+..++... ..+|+++|+|+.+++.|++++.... ...+++++.+|+.++.+. .
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-----~~~~i~~~~~d~~~~~~~~~~~~~~ 143 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-----AEHKIDLRLKPALETLDELLAAGEA 143 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-----CTTTEEEEESCHHHHHHHHHHTTCT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC-----CCCeEEEEEcCHHHHHHHHHhcCCC
Confidence 46799999999999999999432 4589999999999999999986431 124789999988654211 1
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++||+|++... ......+++.+.++|+||
T Consensus 144 ~~~D~v~~d~~-----~~~~~~~l~~~~~~L~pg 172 (229)
T 2avd_A 144 GTFDVAVVDAD-----KENCSAYYERCLQLLRPG 172 (229)
T ss_dssp TCEEEEEECSC-----STTHHHHHHHHHHHEEEE
T ss_pred CCccEEEECCC-----HHHHHHHHHHHHHHcCCC
Confidence 58999998643 333458999999999986
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.11 E-value=6.4e-11 Score=107.89 Aligned_cols=101 Identities=13% Similarity=0.034 Sum_probs=76.1
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|..|..|+... ..+|+++|+|+.+++.+++++... ...++.++++|+.++....++||+
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~------g~~~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL------GVLNVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH------TCCSEEEESSCGGGGGGGCCCEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh------CCCeEEEEECChhhcccccccCCE
Confidence 357899999999999999999543 247999999999999999998643 223689999999887543468999
Q ss_pred hhhhhH------HhhcCc-------hh-------HHHHHHHHHhhccCC
Q 024811 234 IWVQWC------IGHLTD-------DD-------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~v------l~hltD-------~e-------l~~~l~~~~~~LkPG 262 (262)
|++..+ +++.++ .+ ...+|+++.++|+||
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpG 239 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG 239 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 998522 222221 11 147999999999986
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-11 Score=108.96 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=76.5
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI 234 (262)
.+.+|||||||+|.++..+++.. ..+|++||+++.|++.|++++..... ....++++++.+|..++- ...++||+|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~--~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAG--KLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHT--TTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcc--ccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 46799999999999999999432 46899999999999999998743100 012357999999987652 223689999
Q ss_pred hhhhHHhhcCchh--HHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDD--FVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~e--l~~~l~~~~~~LkPG 262 (262)
++....++.+... ..+|++.+++.|+||
T Consensus 153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pg 182 (275)
T 1iy9_A 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKED 182 (275)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence 9975433222211 137999999999986
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.7e-11 Score=103.55 Aligned_cols=96 Identities=9% Similarity=0.058 Sum_probs=75.4
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-------C
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------E 227 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-------~ 227 (262)
++.+|||+|||+|..+..++... ..+|+++|+|+.+++.|++++..+. ...+++++.+|..++.+ .
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-----~~~~i~~~~gda~~~l~~l~~~~~~ 144 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG-----VEHKINFIESDAMLALDNLLQGQES 144 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT-----CGGGEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEEcCHHHHHHHHHhccCC
Confidence 46799999999999999999543 4689999999999999999986531 22468999999876522 1
Q ss_pred CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 228 ~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++||+|++... ......+++.+.++|+||
T Consensus 145 ~~~fD~I~~d~~-----~~~~~~~l~~~~~~L~pG 174 (237)
T 3c3y_A 145 EGSYDFGFVDAD-----KPNYIKYHERLMKLVKVG 174 (237)
T ss_dssp TTCEEEEEECSC-----GGGHHHHHHHHHHHEEEE
T ss_pred CCCcCEEEECCc-----hHHHHHHHHHHHHhcCCC
Confidence 368999997632 234458999999999986
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.10 E-value=5.8e-11 Score=108.23 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=73.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhccccc----cc-CCCCCcceEEEEcCCCCCC--C
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPEN----HM-APDMHKATNFFCVPLQDFT--P 226 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~----~~-~~~~~~~v~f~~~d~~~~~--~ 226 (262)
.++.+|||+|||+|.++..|+...+ .+|+++|+++.+++.|++++.... -+ ......+++++.+|+.+.. .
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 3578999999999999999995433 689999999999999999876321 00 0001247899999998863 2
Q ss_pred CCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 227 ~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++||+|+++ +.++. .++.++.++|+||
T Consensus 184 ~~~~fD~V~~~-----~~~~~--~~l~~~~~~Lkpg 212 (336)
T 2b25_A 184 KSLTFDAVALD-----MLNPH--VTLPVFYPHLKHG 212 (336)
T ss_dssp ----EEEEEEC-----SSSTT--TTHHHHGGGEEEE
T ss_pred CCCCeeEEEEC-----CCCHH--HHHHHHHHhcCCC
Confidence 34589999984 34454 5889999999986
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=8.9e-11 Score=106.73 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=65.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||||||+|.+|..|+ +.+.+|++||.++.|++.+++++.. ..+++++++|+.+++++..+||+|+
T Consensus 49 ~~~~~VLEIG~G~G~lT~~La-~~~~~V~aVEid~~li~~a~~~~~~--------~~~v~vi~gD~l~~~~~~~~fD~Iv 119 (295)
T 3gru_A 49 TKDDVVLEIGLGKGILTEELA-KNAKKVYVIEIDKSLEPYANKLKEL--------YNNIEIIWGDALKVDLNKLDFNKVV 119 (295)
T ss_dssp CTTCEEEEECCTTSHHHHHHH-HHSSEEEEEESCGGGHHHHHHHHHH--------CSSEEEEESCTTTSCGGGSCCSEEE
T ss_pred CCcCEEEEECCCchHHHHHHH-hcCCEEEEEECCHHHHHHHHHHhcc--------CCCeEEEECchhhCCcccCCccEEE
Confidence 457799999999999999999 5578999999999999999998752 2478999999999876656799999
Q ss_pred hhhHH
Q 024811 236 VQWCI 240 (262)
Q Consensus 236 s~~vl 240 (262)
++.+.
T Consensus 120 ~NlPy 124 (295)
T 3gru_A 120 ANLPY 124 (295)
T ss_dssp EECCG
T ss_pred EeCcc
Confidence 98653
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-11 Score=108.94 Aligned_cols=95 Identities=9% Similarity=0.006 Sum_probs=67.8
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeC----CHHHHHHHHhhcccccccCCCCCcceEEEEc-CCCCCCCCCCc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGR 230 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~----s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~-d~~~~~~~~~~ 230 (262)
.++.+|||+|||||.+|..++ +. .+|.+||. ++.+++.++ .. .....++.|+++ |+.++++ ++
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la-~~-~~V~gvD~~~~~~~~~~~~~~--~~------~~~~~~v~~~~~~D~~~l~~--~~ 148 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCG-GL-KNVREVKGLTKGGPGHEEPIP--MS------TYGWNLVRLQSGVDVFFIPP--ER 148 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHH-TS-TTEEEEEEECCCSTTSCCCCC--CC------STTGGGEEEECSCCTTTSCC--CC
T ss_pred CCCCEEEEEcCCCCHHHHHHH-hc-CCEEEEeccccCchhHHHHHH--hh------hcCCCCeEEEeccccccCCc--CC
Confidence 457899999999999999999 54 57999999 565542111 10 011247899998 8887743 58
Q ss_pred cchhhhhhHH---hhcCchh-HHHHHHHHHhhccCC
Q 024811 231 YDVIWVQWCI---GHLTDDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~vl---~hltD~e-l~~~l~~~~~~LkPG 262 (262)
||+|+|..++ ++..|.. ...+|..+.++|+||
T Consensus 149 fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpG 184 (305)
T 2p41_A 149 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNN 184 (305)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred CCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCC
Confidence 9999998664 3333332 225889999999997
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-11 Score=104.56 Aligned_cols=96 Identities=7% Similarity=0.060 Sum_probs=73.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----CCC--
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET-- 228 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~----~~~-- 228 (262)
++.+|||+|||+|..+..|+... ..+|+++|+|+.+++.|++++..+. ...+++++.+|+.++. ...
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-----~~~~i~~~~~d~~~~l~~l~~~~~~ 146 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG-----VAEKISLRLGPALATLEQLTQGKPL 146 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-----CGGGEEEEESCHHHHHHHHHTSSSC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEEcCHHHHHHHHHhcCCC
Confidence 36699999999999999999433 3489999999999999999876431 1246899999975531 112
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++||+|++... ..+...+++++.++|+||
T Consensus 147 ~~fD~V~~d~~-----~~~~~~~l~~~~~~Lkpg 175 (232)
T 3cbg_A 147 PEFDLIFIDAD-----KRNYPRYYEIGLNLLRRG 175 (232)
T ss_dssp CCEEEEEECSC-----GGGHHHHHHHHHHTEEEE
T ss_pred CCcCEEEECCC-----HHHHHHHHHHHHHHcCCC
Confidence 58999997643 234458999999999986
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-11 Score=111.02 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=72.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI 234 (262)
.+.+|||||||+|.++..+++.. ..+|++||+|+.+++.|++++...... -...+++++.+|+.++. ...++||+|
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~--~~~~rv~~~~~D~~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCG--FSHPKLDLFCGDGFEFLKNHKNEFDVI 185 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGG--GGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccc--cCCCCEEEEEChHHHHHHhcCCCceEE
Confidence 45799999999999999999432 468999999999999999988532000 01347899999987652 123689999
Q ss_pred hhhhHHhhcCchhH--HHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDF--VSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el--~~~l~~~~~~LkPG 262 (262)
++...-+.-++..+ .++++.++++|+||
T Consensus 186 i~d~~~~~~~~~~l~t~~~l~~~~~~Lkpg 215 (314)
T 2b2c_A 186 ITDSSDPVGPAESLFGQSYYELLRDALKED 215 (314)
T ss_dssp EECCC-------------HHHHHHHHEEEE
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHhhcCCC
Confidence 98764222222222 48999999999986
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-11 Score=110.32 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=75.5
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
.+.+|||+|||+|.++..+++.. ..+|++||+|+.+++.|++++..... .-...+++++.+|+.++.+ ..++||+|
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~--~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISC--GYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSG--GGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcc--ccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 45799999999999999999432 46899999999999999998753100 0013478999999876521 23689999
Q ss_pred hhhhHHhhcC-chhH--HHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLT-DDDF--VSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hlt-D~el--~~~l~~~~~~LkPG 262 (262)
++... .++. ...+ .++++.+.+.|+||
T Consensus 194 i~d~~-~p~~~~~~l~~~~~l~~~~~~Lkpg 223 (321)
T 2pt6_A 194 IVDSS-DPIGPAETLFNQNFYEKIYNALKPN 223 (321)
T ss_dssp EEECC-CSSSGGGGGSSHHHHHHHHHHEEEE
T ss_pred EECCc-CCCCcchhhhHHHHHHHHHHhcCCC
Confidence 98753 1221 1222 48999999999986
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.7e-11 Score=110.15 Aligned_cols=97 Identities=16% Similarity=0.071 Sum_probs=75.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||+|||+|.++..++ ..+. +|+++|+|+.|++.|++++..+. ...+++|+++|+.++++..++||+|
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a-~~~~~~~v~g~Dis~~~l~~A~~n~~~~g-----l~~~i~~~~~D~~~~~~~~~~fD~I 290 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELA-LRRYSGEIIGIEKYRKHLIGAEMNALAAG-----VLDKIKFIQGDATQLSQYVDSVDFA 290 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHH-HTTCCSCEEEEESCHHHHHHHHHHHHHTT-----CGGGCEEEECCGGGGGGTCSCEEEE
T ss_pred CCCEEEEccCcCcHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHHHHcC-----CCCceEEEECChhhCCcccCCcCEE
Confidence 46789999999999999999 5565 89999999999999999986531 1247899999999987655789999
Q ss_pred hhhhHHhhcC----c-hhH-HHHHHHHHhhc
Q 024811 235 WVQWCIGHLT----D-DDF-VSFFKRAKVNH 259 (262)
Q Consensus 235 ~s~~vl~hlt----D-~el-~~~l~~~~~~L 259 (262)
+++.+++.-. . +++ ..+++.++++|
T Consensus 291 i~npPyg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 291 ISNLPYGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp EEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred EECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence 9987654322 1 122 46788888876
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-10 Score=103.59 Aligned_cols=95 Identities=11% Similarity=-0.066 Sum_probs=80.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+. ...+|.++|+++.|++.+++++... +.+.+|..+|...-+++ ++||+|++
T Consensus 105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~-------g~~~~~~v~D~~~~~~~-~~~DvvLl 174 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREK-------DWDFTFALQDVLCAPPA-EAGDLALI 174 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHT-------TCEEEEEECCTTTSCCC-CBCSEEEE
T ss_pred CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhc-------CCCceEEEeecccCCCC-CCcchHHH
Confidence 47799999999999999988 4568999999999999999997542 35788999999887665 69999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.-++|||.+.+-...+ ++.+.|+++
T Consensus 175 lk~lh~LE~q~~~~~~-~ll~aL~~~ 199 (253)
T 3frh_A 175 FKLLPLLEREQAGSAM-ALLQSLNTP 199 (253)
T ss_dssp ESCHHHHHHHSTTHHH-HHHHHCBCS
T ss_pred HHHHHHhhhhchhhHH-HHHHHhcCC
Confidence 9999999987755666 777777764
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.5e-11 Score=99.02 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=67.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC---CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-------
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~---~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~------- 225 (262)
.++.+|||+|||+|.++..|+.... .+|+++|+|+.. . ..++.++++|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~---------~~~v~~~~~d~~~~~~~~~~~~ 83 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------P---------IPNVYFIQGEIGKDNMNNIKNI 83 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------C---------CTTCEEEECCTTTTSSCCC---
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------C---------CCCceEEEccccchhhhhhccc
Confidence 3567999999999999999995542 579999999831 0 135789999998765
Q ss_pred ------------------CCCCccchhhhhhHHhhcC----chh-----HHHHHHHHHhhccCC
Q 024811 226 ------------------PETGRYDVIWVQWCIGHLT----DDD-----FVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 ------------------~~~~~yDlI~s~~vl~hlt----D~e-----l~~~l~~~~~~LkPG 262 (262)
.+.++||+|+|+.++++.. |.. ...+++++.++|+||
T Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg 147 (201)
T 2plw_A 84 NYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIG 147 (201)
T ss_dssp --------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred cccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC
Confidence 2346899999987766542 221 124889999999996
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-11 Score=110.16 Aligned_cols=91 Identities=11% Similarity=0.032 Sum_probs=64.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC---CCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~---~~~~yDl 233 (262)
++.+|||+|||||.+|..|+.....+|++||+|+.|++.+.++-.. ...+...++..+.+ +..+||+
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~r----------v~~~~~~ni~~l~~~~l~~~~fD~ 154 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDR----------VRSMEQYNFRYAEPVDFTEGLPSF 154 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTT----------EEEECSCCGGGCCGGGCTTCCCSE
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcc----------cceecccCceecchhhCCCCCCCE
Confidence 4569999999999999999944346899999999999986543211 11121223322221 1235999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++..+++++ . .+|.++.++|+||
T Consensus 155 v~~d~sf~sl---~--~vL~e~~rvLkpG 178 (291)
T 3hp7_A 155 ASIDVSFISL---N--LILPALAKILVDG 178 (291)
T ss_dssp EEECCSSSCG---G--GTHHHHHHHSCTT
T ss_pred EEEEeeHhhH---H--HHHHHHHHHcCcC
Confidence 9998888766 3 7999999999997
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-10 Score=101.94 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=58.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC-Cccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~-~~yDlI 234 (262)
.++.+|||+|||+|.+|..|+ +.+.+|++||+|+.|++.+++++.. ..+++++++|+.+++++. ..|+ |
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~-~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~v~~~~~D~~~~~~~~~~~~~-v 98 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELV-QRCNFVTAIEIDHKLCKTTENKLVD--------HDNFQVLNKDILQFKFPKNQSYK-I 98 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHH-HHSSEEEEECSCHHHHHHHHHHTTT--------CCSEEEECCCGGGCCCCSSCCCE-E
T ss_pred CCCCEEEEEeCCchHHHHHHH-HcCCeEEEEECCHHHHHHHHHhhcc--------CCCeEEEEChHHhCCcccCCCeE-E
Confidence 357799999999999999999 5568999999999999999998742 247899999999886542 3553 4
Q ss_pred hhh
Q 024811 235 WVQ 237 (262)
Q Consensus 235 ~s~ 237 (262)
+++
T Consensus 99 v~n 101 (244)
T 1qam_A 99 FGN 101 (244)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-10 Score=104.73 Aligned_cols=97 Identities=9% Similarity=-0.070 Sum_probs=81.7
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.+.+|||+|||+|-++..++... ..+|.++|+++.|++.+++++... +...++...|+..-.++ ++||+|+
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~-------g~~~~~~v~D~~~~~p~-~~~DvaL 203 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL-------NVPHRTNVADLLEDRLD-EPADVTL 203 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT-------TCCEEEEECCTTTSCCC-SCCSEEE
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-------CCCceEEEeeecccCCC-CCcchHH
Confidence 46799999999999999998332 348999999999999999998652 23578889998876664 7999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++-+++||.+.+....+ ++.+.|+||
T Consensus 204 ~lkti~~Le~q~kg~g~-~ll~aL~~~ 229 (281)
T 3lcv_B 204 LLKTLPCLETQQRGSGW-EVIDIVNSP 229 (281)
T ss_dssp ETTCHHHHHHHSTTHHH-HHHHHSSCS
T ss_pred HHHHHHHhhhhhhHHHH-HHHHHhCCC
Confidence 99999999998866777 899998885
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-10 Score=99.90 Aligned_cols=96 Identities=10% Similarity=-0.069 Sum_probs=68.5
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC---CC
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ET 228 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~---~~ 228 (262)
++.++.+|||+|||||..+..++.... .+|.++|.|+.|++...+.... ..++.++++|+..... ..
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~--------r~nv~~i~~Da~~~~~~~~~~ 144 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR--------RPNIFPLLADARFPQSYKSVV 144 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH--------CTTEEEEECCTTCGGGTTTTC
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCeEEEEcccccchhhhccc
Confidence 355789999999999999999994433 3899999999997655443221 1378999999876421 13
Q ss_pred CccchhhhhhHHhhcCchhHHH-HHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVS-FFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~-~l~~~~~~LkPG 262 (262)
++||+|++..+. ++..+ ++..+.+.||||
T Consensus 145 ~~~D~I~~d~a~-----~~~~~il~~~~~~~LkpG 174 (232)
T 3id6_C 145 ENVDVLYVDIAQ-----PDQTDIAIYNAKFFLKVN 174 (232)
T ss_dssp CCEEEEEECCCC-----TTHHHHHHHHHHHHEEEE
T ss_pred cceEEEEecCCC-----hhHHHHHHHHHHHhCCCC
Confidence 589999988542 33334 456667799986
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.7e-11 Score=106.20 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=73.4
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI 234 (262)
.+.+|||+|||+|.++..+++.. ..+|++||+|+.+++.|++++...... ....+++++.+|+.++. ...++||+|
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~l~~~~~~fD~I 167 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCG--FDDPRAEIVIANGAEYVRKFKNEFDVI 167 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGG--GGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccc--cCCCceEEEECcHHHHHhhCCCCceEE
Confidence 35799999999999999999432 468999999999999999987431000 01247899999987642 223689999
Q ss_pred hhhhHHhhcCch---hHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDD---DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~---el~~~l~~~~~~LkPG 262 (262)
++...-+++... ...++++.+++.|+||
T Consensus 168 i~d~~~~~~~~~~~l~~~~~l~~~~~~Lkpg 198 (296)
T 1inl_A 168 IIDSTDPTAGQGGHLFTEEFYQACYDALKED 198 (296)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEE
T ss_pred EEcCCCcccCchhhhhHHHHHHHHHHhcCCC
Confidence 986432212211 1147999999999986
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-10 Score=103.43 Aligned_cols=101 Identities=10% Similarity=-0.026 Sum_probs=76.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETG 229 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~ 229 (262)
.++.+|||+|||+|..|..|+... . .+|+++|.|+.+++.+++++... ...++.++++|+.++.. ..+
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~------g~~~v~~~~~D~~~~~~~~~~~~~ 155 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM------GVLNTIIINADMRKYKDYLLKNEI 155 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCHHHHHHHHHHTTC
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh------CCCcEEEEeCChHhcchhhhhccc
Confidence 357899999999999999999532 2 58999999999999999998643 22478999999987643 136
Q ss_pred ccchhhhhhH------Hh--------hcCc--hhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWC------IG--------HLTD--DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~v------l~--------hltD--~el~~~l~~~~~~LkPG 262 (262)
+||+|++..+ ++ ++.. ....++|+++.+.|+||
T Consensus 156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 204 (274)
T 3ajd_A 156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKD 204 (274)
T ss_dssp CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEE
T ss_pred cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8999998722 11 1110 12347999999999986
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=8.9e-11 Score=109.91 Aligned_cols=101 Identities=8% Similarity=0.027 Sum_probs=76.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCc-ceEEEEcCCCCCCC----CCCcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTP----ETGRY 231 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~-~v~f~~~d~~~~~~----~~~~y 231 (262)
++.+|||+|||+|.++..++.....+|++||.|+.|++.|++++... .... +++|+++|+.++.+ ...+|
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n-----~~~~~~v~~~~~D~~~~l~~~~~~~~~f 286 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEAN-----HLDMANHQLVVMDVFDYFKYARRHHLTY 286 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHT-----TCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCccceEEEECCHHHHHHHHHHhCCCc
Confidence 36799999999999999999444568999999999999999998642 1112 78999999977532 12489
Q ss_pred chhhhhhHH-----hhcCch--hHHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCI-----GHLTDD--DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl-----~hltD~--el~~~l~~~~~~LkPG 262 (262)
|+|++..+. +++.+. .+.+++..+.+.|+||
T Consensus 287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pg 324 (385)
T 2b78_A 287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN 324 (385)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE
T ss_pred cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCC
Confidence 999997543 334332 3446888889999986
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.7e-10 Score=102.27 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=69.1
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC-Cccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~-~~yDlI 234 (262)
.++ +|||||||+|.+|..|+ +.+.+|++||.++.|++.+++++.. .+++++++|+.+++.+. ..+|.|
T Consensus 46 ~~~-~VLEIG~G~G~lt~~L~-~~~~~V~avEid~~~~~~l~~~~~~---------~~v~vi~~D~l~~~~~~~~~~~~i 114 (271)
T 3fut_A 46 FTG-PVFEVGPGLGALTRALL-EAGAEVTAIEKDLRLRPVLEETLSG---------LPVRLVFQDALLYPWEEVPQGSLL 114 (271)
T ss_dssp CCS-CEEEECCTTSHHHHHHH-HTTCCEEEEESCGGGHHHHHHHTTT---------SSEEEEESCGGGSCGGGSCTTEEE
T ss_pred CCC-eEEEEeCchHHHHHHHH-HcCCEEEEEECCHHHHHHHHHhcCC---------CCEEEEECChhhCChhhccCccEE
Confidence 356 99999999999999999 5678999999999999999998742 37899999999886643 268999
Q ss_pred hhhhHHhhcCchhHHHHHH
Q 024811 235 WVQWCIGHLTDDDFVSFFK 253 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~ 253 (262)
++|.. .+++.+-+..++.
T Consensus 115 v~NlP-y~iss~il~~ll~ 132 (271)
T 3fut_A 115 VANLP-YHIATPLVTRLLK 132 (271)
T ss_dssp EEEEC-SSCCHHHHHHHHH
T ss_pred EecCc-ccccHHHHHHHhc
Confidence 99875 4555555445554
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.7e-10 Score=101.07 Aligned_cols=96 Identities=8% Similarity=-0.040 Sum_probs=69.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||||||+|.++..|++.. ..+|+++|.++.+++.|++++.... ...++++.++|..+..++..+||+|+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g-----l~~~I~v~~gD~l~~~~~~~~~D~Iv 95 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG-----LTEQIDVRKGNGLAVIEKKDAIDTIV 95 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----CTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEEecchhhccCccccccEEE
Confidence 57899999999999999999442 2379999999999999999986431 22368999999987654323699988
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
+... --.-+..++......|++
T Consensus 96 iagm----Gg~lI~~IL~~~~~~L~~ 117 (244)
T 3gnl_A 96 IAGM----GGTLIRTILEEGAAKLAG 117 (244)
T ss_dssp EEEE----CHHHHHHHHHHTGGGGTT
T ss_pred EeCC----chHHHHHHHHHHHHHhCC
Confidence 6432 112233566666666654
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-10 Score=101.07 Aligned_cols=86 Identities=13% Similarity=0.181 Sum_probs=66.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC----CCcc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TGRY 231 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~----~~~y 231 (262)
.++.+|||||||+|.+|..|+ +.+.+|++||.++.|++.+++++.. ..+++++++|+.+++++ .++|
T Consensus 28 ~~~~~VLEIG~G~G~lt~~La-~~~~~V~avEid~~~~~~~~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~~~~ 98 (255)
T 3tqs_A 28 QKTDTLVEIGPGRGALTDYLL-TECDNLALVEIDRDLVAFLQKKYNQ--------QKNITIYQNDALQFDFSSVKTDKPL 98 (255)
T ss_dssp CTTCEEEEECCTTTTTHHHHT-TTSSEEEEEECCHHHHHHHHHHHTT--------CTTEEEEESCTTTCCGGGSCCSSCE
T ss_pred CCcCEEEEEcccccHHHHHHH-HhCCEEEEEECCHHHHHHHHHHHhh--------CCCcEEEEcchHhCCHHHhccCCCe
Confidence 357799999999999999999 6678999999999999999998753 24789999999998653 2468
Q ss_pred chhhhhhHHhhcCchhHHHHH
Q 024811 232 DVIWVQWCIGHLTDDDFVSFF 252 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l 252 (262)
| |++|... +++.+-+..++
T Consensus 99 ~-vv~NlPY-~is~~il~~ll 117 (255)
T 3tqs_A 99 R-VVGNLPY-NISTPLLFHLF 117 (255)
T ss_dssp E-EEEECCH-HHHHHHHHHHH
T ss_pred E-EEecCCc-ccCHHHHHHHH
Confidence 8 7777653 34444333444
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.1e-10 Score=101.58 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=75.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+++....+|.++|.|+.+++.+++|+..- ....++.++++|..++.+. +.||.|++
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N-----~v~~~v~~~~~D~~~~~~~-~~~D~Vi~ 198 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN-----KVEDRMSAYNMDNRDFPGE-NIADRILM 198 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHT-----TCTTTEEEECSCTTTCCCC-SCEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEeCcHHHhccc-cCCCEEEE
Confidence 57899999999999999999554568999999999999999998642 2234689999999998664 78999987
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.. .... .|+..+.++|+||
T Consensus 199 ~~p----~~~~--~~l~~a~~~lk~g 218 (278)
T 3k6r_A 199 GYV----VRTH--EFIPKALSIAKDG 218 (278)
T ss_dssp CCC----SSGG--GGHHHHHHHEEEE
T ss_pred CCC----CcHH--HHHHHHHHHcCCC
Confidence 743 2233 6777788888875
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-10 Score=99.09 Aligned_cols=96 Identities=14% Similarity=0.033 Sum_probs=72.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||||||+|.++..++ ..+ .+|+++|.++.+++.|++++.... ...++++..+|..+.-+...+||+|
T Consensus 15 ~g~~VlDIGtGsG~l~i~la-~~~~~~~V~avDi~~~al~~A~~N~~~~g-----l~~~i~~~~~d~l~~l~~~~~~D~I 88 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELV-ERGQIKSAIAGEVVEGPYQSAVKNVEAHG-----LKEKIQVRLANGLAAFEETDQVSVI 88 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHH-HTTSEEEEEEEESSHHHHHHHHHHHHHTT-----CTTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCEEEEeCCCcHHHHHHHH-HhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEEECchhhhcccCcCCCEE
Confidence 57799999999999999999 444 479999999999999999986531 2236899999985432322369999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++... .-.-+..++..+...|+|+
T Consensus 89 viaG~----Gg~~i~~Il~~~~~~L~~~ 112 (225)
T 3kr9_A 89 TIAGM----GGRLIARILEEGLGKLANV 112 (225)
T ss_dssp EEEEE----CHHHHHHHHHHTGGGCTTC
T ss_pred EEcCC----ChHHHHHHHHHHHHHhCCC
Confidence 87543 2222447888888888774
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-11 Score=108.00 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=71.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI 234 (262)
.++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++.. ..+++++++|+.+++.. .++| .|
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~-~~~~~v~~id~~~~~~~~a~~~~~~--------~~~v~~~~~D~~~~~~~~~~~f-~v 97 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLA-KISKQVTSIELDSHLFNLSSEKLKL--------NTRVTLIHQDILQFQFPNKQRY-KI 97 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHH-HHSSEEEESSSSCSSSSSSSCTTTT--------CSEEEECCSCCTTTTCCCSSEE-EE
T ss_pred CCCCEEEEEeCCCCHHHHHHH-HhCCeEEEEECCHHHHHHHHHHhcc--------CCceEEEECChhhcCcccCCCc-EE
Confidence 357799999999999999999 5568999999999999999887641 24789999999988654 2578 66
Q ss_pred hhhh-----------HHhhcCchhHHHHH----HHHHhhccCC
Q 024811 235 WVQW-----------CIGHLTDDDFVSFF----KRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~-----------vl~hltD~el~~~l----~~~~~~LkPG 262 (262)
+++. .+.|..+.. .+| +.+.++|+||
T Consensus 98 v~n~Py~~~~~~~~~~~~~~~~~~--~~lm~q~e~a~rll~~~ 138 (245)
T 1yub_A 98 VGNIPYHLSTQIIKKVVFESRASD--IYLIVEEGFYKRTLDIH 138 (245)
T ss_dssp EEECCSSSCHHHHHHHHHHCCCEE--EEEEEESSHHHHHHCGG
T ss_pred EEeCCccccHHHHHHHHhCCCCCe--EEEEeeHHHHHHHhCCC
Confidence 6653 233433333 444 6678888875
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-10 Score=108.91 Aligned_cols=101 Identities=10% Similarity=0.015 Sum_probs=76.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC----CCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~----~~~yD 232 (262)
++.+|||+|||+|.++..++.....+|+++|.|+.+++.|++++... ....+++|+++|+.++.+. .++||
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n-----~~~~~v~~~~~d~~~~~~~~~~~~~~fD 291 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLN-----GVEDRMKFIVGSAFEEMEKLQKKGEKFD 291 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT-----TCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCccceEEECCHHHHHHHHHhhCCCCC
Confidence 46799999999999999999443568999999999999999998642 1112789999999876331 35899
Q ss_pred hhhhhhHHhhcCc-------hhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTD-------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD-------~el~~~l~~~~~~LkPG 262 (262)
+|++..+....+. .....++.++.+.|+||
T Consensus 292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 328 (396)
T 2as0_A 292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG 328 (396)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999654322211 23347899999999986
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=104.34 Aligned_cols=101 Identities=9% Similarity=-0.010 Sum_probs=77.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCcc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRY 231 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~y 231 (262)
.++.+|||+|||+|..|..|+.... .+|+++|+|+.+++.+++++... ...++.++++|+.++.+ ..++|
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~------g~~~v~~~~~D~~~~~~~~~~~~f 331 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM------GIKIVKPLVKDARKAPEIIGEEVA 331 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT------TCCSEEEECSCTTCCSSSSCSSCE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc------CCCcEEEEEcChhhcchhhccCCC
Confidence 3578999999999999999995432 57999999999999999998643 23478999999988752 22689
Q ss_pred chhhhh------hHHhhcCch-------hH-------HHHHHHHHhhccCC
Q 024811 232 DVIWVQ------WCIGHLTDD-------DF-------VSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~------~vl~hltD~-------el-------~~~l~~~~~~LkPG 262 (262)
|+|++. .++++.+|. ++ ..+|.++.+.|+||
T Consensus 332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 382 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPG 382 (450)
T ss_dssp EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999962 234444332 11 47899999999986
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-10 Score=109.12 Aligned_cols=99 Identities=17% Similarity=0.069 Sum_probs=76.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC----CCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~----~~~yD 232 (262)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++... ...+++|+++|+.++.+. ..+||
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n------~~~~~~~~~~d~~~~~~~~~~~~~~fD 281 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLN------GLGNVRVLEANAFDLLRRLEKEGERFD 281 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHT------TCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHc------CCCCceEEECCHHHHHHHHHhcCCCee
Confidence 4679999999999999999955 778999999999999999998642 223589999999876431 36899
Q ss_pred hhhhhhHHhhcCc-------hhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTD-------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD-------~el~~~l~~~~~~LkPG 262 (262)
+|++..+....+. .....++..+.+.|+||
T Consensus 282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 318 (382)
T 1wxx_A 282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG 318 (382)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999654222111 23347999999999986
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.9e-10 Score=97.61 Aligned_cols=96 Identities=14% Similarity=-0.012 Sum_probs=71.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||||||+|.++..|++.. ..+|+++|.++.+++.|++++.... ...++++.++|..+..++..+||+|+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g-----l~~~I~~~~gD~l~~~~~~~~~D~Iv 95 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG-----LTSKIDVRLANGLSAFEEADNIDTIT 95 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT-----CTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEECchhhccccccccCEEE
Confidence 57899999999999999999442 2479999999999999999986531 22469999999987654434799988
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
+..... +-+..++......|++
T Consensus 96 iaGmGg----~lI~~IL~~~~~~l~~ 117 (230)
T 3lec_A 96 ICGMGG----RLIADILNNDIDKLQH 117 (230)
T ss_dssp EEEECH----HHHHHHHHHTGGGGTT
T ss_pred EeCCch----HHHHHHHHHHHHHhCc
Confidence 654322 2234566666666655
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-10 Score=107.97 Aligned_cols=98 Identities=9% Similarity=-0.079 Sum_probs=72.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~ 235 (262)
++.+|||+|||||.++..++ ..+..|++||.|+.|++.|++++.... . ..++.++|+.++... .+.||+|+
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a-~~ga~V~avDis~~al~~a~~n~~~ng------~-~~~~~~~D~~~~l~~~~~~fD~Ii 285 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAA-RKGAYALAVDKDLEALGVLDQAALRLG------L-RVDIRHGEALPTLRGLEGPFHHVL 285 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHT------C-CCEEEESCHHHHHHTCCCCEEEEE
T ss_pred CCCeEEEcccchhHHHHHHH-HcCCeEEEEECCHHHHHHHHHHHHHhC------C-CCcEEEccHHHHHHHhcCCCCEEE
Confidence 37799999999999999999 556669999999999999999985421 1 235778888775311 23599999
Q ss_pred hhhHHhhcCc-------hhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTD-------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD-------~el~~~l~~~~~~LkPG 262 (262)
+..+...-+. .+...++..+.++|+||
T Consensus 286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpG 319 (393)
T 4dmg_A 286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEE 319 (393)
T ss_dssp ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEE
T ss_pred ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8754311111 12347888999999986
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-10 Score=104.48 Aligned_cols=98 Identities=10% Similarity=0.080 Sum_probs=78.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcC------CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~------~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~ 230 (262)
++.+|||+|||+|.++..++.... .+|.++|+++.+++.|+.++... ..+++++++|..+..+ .++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~-------g~~~~i~~~D~l~~~~-~~~ 201 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-------RQKMTLLHQDGLANLL-VDP 201 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-------TCCCEEEESCTTSCCC-CCC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC-------CCCceEEECCCCCccc-cCC
Confidence 467999999999999999984432 57999999999999999987542 1157899999876543 368
Q ss_pred cchhhhhhHHhhcCchhHH----------------HHHHHHHhhccCC
Q 024811 231 YDVIWVQWCIGHLTDDDFV----------------SFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~vl~hltD~el~----------------~~l~~~~~~LkPG 262 (262)
||+|+++.+++++++++.. .|+.++.+.|+||
T Consensus 202 fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~g 249 (344)
T 2f8l_A 202 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPG 249 (344)
T ss_dssp EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEE
T ss_pred ccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCC
Confidence 9999999998888655422 5899999999985
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-10 Score=96.12 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=64.8
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC----------CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEE-EcCCCCC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF----------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF-CVPLQDF 224 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~----------~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~-~~d~~~~ 224 (262)
.++.+|||+|||+|.++..|+.... .+|+++|+|+.+ . ..++.++ .+|+.+.
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~---------~~~~~~~~~~d~~~~ 83 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------P---------LEGATFLCPADVTDP 83 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------C---------CTTCEEECSCCTTSH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------c---------CCCCeEEEeccCCCH
Confidence 3578999999999999999995543 579999999831 0 1257788 8888764
Q ss_pred C--------CCCCccchhhhhhH----HhhcCchh-----HHHHHHHHHhhccCC
Q 024811 225 T--------PETGRYDVIWVQWC----IGHLTDDD-----FVSFFKRAKVNHSQT 262 (262)
Q Consensus 225 ~--------~~~~~yDlI~s~~v----l~hltD~e-----l~~~l~~~~~~LkPG 262 (262)
. .+.++||+|+|..+ .+|..|.. ...+++++.++|+||
T Consensus 84 ~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 138 (196)
T 2nyu_A 84 RTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG 138 (196)
T ss_dssp HHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC
Confidence 2 12258999998653 33433431 137899999999986
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-10 Score=108.81 Aligned_cols=88 Identities=11% Similarity=0.015 Sum_probs=69.6
Q ss_pred CCceeeEeecc------ccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-
Q 024811 157 QHLVALDCGSG------IGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE- 227 (262)
Q Consensus 157 ~~~~VLDlGcG------tG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~- 227 (262)
++.+||||||| ||..+..++.++ ..+|++||+|+.|. . ...+++|+++|+.++++.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~---------~~~rI~fv~GDa~dlpf~~ 280 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V---------DELRIRTIQGDQNDAEFLD 280 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G---------CBTTEEEEECCTTCHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h---------cCCCcEEEEecccccchhh
Confidence 46799999999 788888888554 35799999999983 1 124799999999986543
Q ss_pred -----CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 228 -----~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++||+|+|.. .||+.+.. .+|+++.++||||
T Consensus 281 ~l~~~d~sFDlVisdg-sH~~~d~~--~aL~el~rvLKPG 317 (419)
T 3sso_A 281 RIARRYGPFDIVIDDG-SHINAHVR--TSFAALFPHVRPG 317 (419)
T ss_dssp HHHHHHCCEEEEEECS-CCCHHHHH--HHHHHHGGGEEEE
T ss_pred hhhcccCCccEEEECC-cccchhHH--HHHHHHHHhcCCC
Confidence 47899999975 46655544 8999999999997
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-09 Score=102.04 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=69.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|.|+.|++.|++++... ... ++|+++|+.++.+. +||+|++
T Consensus 290 ~~~~VLDlgcG~G~~sl~la-~~~~~V~gvD~s~~ai~~A~~n~~~n------gl~-v~~~~~d~~~~~~~--~fD~Vv~ 359 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLA-KRGFNVKGFDSNEFAIEMARRNVEIN------NVD-AEFEVASDREVSVK--GFDTVIV 359 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHH------TCC-EEEEECCTTTCCCT--TCSEEEE
T ss_pred CCCEEEEeeccchHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHHc------CCc-EEEEECChHHcCcc--CCCEEEE
Confidence 46799999999999999999 56789999999999999999987532 123 89999999998543 8999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
...-..+. + .+++.+. .|+||
T Consensus 360 dPPr~g~~--~--~~~~~l~-~l~p~ 380 (425)
T 2jjq_A 360 DPPRAGLH--P--RLVKRLN-REKPG 380 (425)
T ss_dssp CCCTTCSC--H--HHHHHHH-HHCCS
T ss_pred cCCccchH--H--HHHHHHH-hcCCC
Confidence 76532221 1 3444444 36664
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-10 Score=106.93 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=76.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCC-CcceEEEEcCCCCCCCC----CCcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM-HKATNFFCVPLQDFTPE----TGRY 231 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~-~~~v~f~~~d~~~~~~~----~~~y 231 (262)
++.+|||+|||+|.++..++.....+|++||.|+.+++.|++++... .. ..+++|+++|+.++.+. ..+|
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~n-----gl~~~~v~~~~~D~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN-----KLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT-----TCCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCccceEEEECCHHHHHHHHHhcCCCC
Confidence 46799999999999999999443568999999999999999998542 11 12789999999876331 3589
Q ss_pred chhhhhhHHhhc-----Cc--hhHHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHL-----TD--DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hl-----tD--~el~~~l~~~~~~LkPG 262 (262)
|+|++..+.... .+ .....++.++.+.|+||
T Consensus 295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 332 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEG 332 (396)
T ss_dssp EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEE
T ss_pred CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999998643211 11 34458999999999986
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-09 Score=101.39 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=62.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~~yD 232 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|.|+.|++.|++++... ...+++|+++|+.++.+ ..++||
T Consensus 286 ~~~~VLDlgcG~G~~~~~la-~~~~~V~gvD~s~~al~~A~~n~~~~------~~~~v~f~~~d~~~~l~~~~~~~~~fD 358 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLA-TQAASVVGVEGVPALVEKGQQNARLN------GLQNVTFYHENLEEDVTKQPWAKNGFD 358 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHH-TTSSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCTTSCCSSSGGGTTCCS
T ss_pred CCCEEEECCCCCCHHHHHHH-hhCCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEECCHHHHhhhhhhhcCCCC
Confidence 46799999999999999999 55789999999999999999997542 23479999999988422 235899
Q ss_pred hhhhhhH
Q 024811 233 VIWVQWC 239 (262)
Q Consensus 233 lI~s~~v 239 (262)
+|+++..
T Consensus 359 ~Vv~dPP 365 (433)
T 1uwv_A 359 KVLLDPA 365 (433)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9998754
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-09 Score=103.96 Aligned_cols=100 Identities=10% Similarity=0.008 Sum_probs=76.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDl 233 (262)
++.+|||+|||+|..|..|+.... ..|+++|+|+.+++.+++++... ...++.++++|+.++.. ..++||+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~------g~~nv~~~~~D~~~~~~~~~~~fD~ 190 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC------GISNVALTHFDGRVFGAAVPEMFDA 190 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH------TCCSEEEECCCSTTHHHHSTTCEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCCHHHhhhhccccCCE
Confidence 578999999999999999995432 47999999999999999998653 22468999999988753 3368999
Q ss_pred hhhhh------HHhhcCch-------h-------HHHHHHHHHhhccCC
Q 024811 234 IWVQW------CIGHLTDD-------D-------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~------vl~hltD~-------e-------l~~~l~~~~~~LkPG 262 (262)
|++.. ++.+.++. + ..++|.++.++||||
T Consensus 191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 239 (479)
T 2frx_A 191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 (479)
T ss_dssp EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99731 23333321 1 236899999999986
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.1e-10 Score=101.80 Aligned_cols=90 Identities=8% Similarity=0.081 Sum_probs=72.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++.. + ....+|+++|.|+.+++.|++++... ....+++|+++|+.++. ++||+|++
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a-~~~~~V~~vD~s~~ai~~a~~n~~~n-----~l~~~v~~~~~D~~~~~---~~fD~Vi~ 264 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-C-KNAKKIYAIDINPHAIELLKKNIKLN-----KLEHKIIPILSDVREVD---VKGNRVIM 264 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-T-TTSSEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEESCGGGCC---CCEEEEEE
T ss_pred CCCEEEEccCccCHHHHh-c-cCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEECChHHhc---CCCcEEEE
Confidence 467999999999999999 8 46778999999999999999998642 11246899999999875 68999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+-.. . .++..+.++|+||
T Consensus 265 dpP~~~----~--~~l~~~~~~L~~g 284 (336)
T 2yx1_A 265 NLPKFA----H--KFIDKALDIVEEG 284 (336)
T ss_dssp CCTTTG----G--GGHHHHHHHEEEE
T ss_pred CCcHhH----H--HHHHHHHHHcCCC
Confidence 743211 1 6888888888875
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.5e-10 Score=112.32 Aligned_cols=102 Identities=14% Similarity=0.081 Sum_probs=76.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI~ 235 (262)
++.+|||+|||||.++..++.....+|++||.|+.+++.|++++.... ....+++|+++|+.++.+ ..++||+|+
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ng----l~~~~v~~i~~D~~~~l~~~~~~fD~Ii 614 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNG----LTGRAHRLIQADCLAWLREANEQFDLIF 614 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT----CCSTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCccceEEEecCHHHHHHhcCCCccEEE
Confidence 367999999999999999995444569999999999999999986421 011368999999987522 236899999
Q ss_pred hhhHH-h------hcCc--hhHHHHHHHHHhhccCC
Q 024811 236 VQWCI-G------HLTD--DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl-~------hltD--~el~~~l~~~~~~LkPG 262 (262)
+..+. . +.-+ .+...++..+.++|+||
T Consensus 615 ~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkpg 650 (703)
T 3v97_A 615 IDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAG 650 (703)
T ss_dssp ECCCSBC-------CCBHHHHHHHHHHHHHHHEEEE
T ss_pred ECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCC
Confidence 97632 1 0111 24457899999999986
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-09 Score=101.33 Aligned_cols=100 Identities=13% Similarity=-0.014 Sum_probs=76.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yD 232 (262)
.++.+|||+|||+|..|..++.... .+|+++|+|+.+++.+++++... ..++.++++|+.++. ...++||
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~-------g~~~~~~~~D~~~~~~~~~~~~fD 317 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL-------GMKATVKQGDGRYPSQWCGEQQFD 317 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT-------TCCCEEEECCTTCTHHHHTTCCEE
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc-------CCCeEEEeCchhhchhhcccCCCC
Confidence 3578999999999999999994432 48999999999999999998643 124689999998874 2336899
Q ss_pred hhhhh------hHHhhcCch-------hH-------HHHHHHHHhhccCC
Q 024811 233 VIWVQ------WCIGHLTDD-------DF-------VSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~------~vl~hltD~-------el-------~~~l~~~~~~LkPG 262 (262)
+|++. .++++.++. ++ .++|.++.+.|+||
T Consensus 318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpG 367 (429)
T 1sqg_A 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG 367 (429)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99963 234444432 11 37899999999986
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.86 E-value=9.7e-10 Score=93.04 Aligned_cols=89 Identities=11% Similarity=-0.038 Sum_probs=65.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-------C
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-------T 228 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-------~ 228 (262)
.++.+|||+|||||.++..++ +...+|++||+++.. ...+++|+++|+.+.... .
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la-~~~~~V~gvD~~~~~-----------------~~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLN-SLARKIISIDLQEME-----------------EIAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHT-TTCSEEEEEESSCCC-----------------CCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred CCCCEEEEEeecCCHHHHHHH-HcCCcEEEEeccccc-----------------cCCCeEEEEccccCHHHHHHHHHHhh
Confidence 357899999999999999999 557789999998741 123689999999876410 0
Q ss_pred ----Cccchhhhhh--------HHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 229 ----GRYDVIWVQW--------CIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ----~~yDlI~s~~--------vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
++||+|+|.. ...|... .....+++.+.++|+||
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpG 132 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNG 132 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC
Confidence 3899999853 2222222 12346899999999997
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-09 Score=104.92 Aligned_cols=100 Identities=10% Similarity=-0.047 Sum_probs=75.1
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yD 232 (262)
.++.+|||+|||+|..|..|+.... ..|+++|+|+.+++.+++++... ... +.++++|+.++.. ..++||
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~------G~~-v~~~~~Da~~l~~~~~~~FD 172 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW------GAP-LAVTQAPPRALAEAFGTYFH 172 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH------CCC-CEEECSCHHHHHHHHCSCEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCe-EEEEECCHHHhhhhccccCC
Confidence 3578999999999999999995432 37999999999999999998653 223 7889999877642 236899
Q ss_pred hhhhhh------HHhhcCch-------hH-------HHHHHHHHhhccCC
Q 024811 233 VIWVQW------CIGHLTDD-------DF-------VSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~------vl~hltD~-------el-------~~~l~~~~~~LkPG 262 (262)
+|++.. ++.+-++. ++ .++|..+.++|+||
T Consensus 173 ~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 222 (464)
T 3m6w_A 173 RVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPG 222 (464)
T ss_dssp EEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred EEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999532 23332221 11 47999999999986
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.7e-10 Score=97.77 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=61.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCH-------HHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--C
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS-------HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--E 227 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~-------~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~ 227 (262)
++.+|||+|||+|.++..|+ ..+.+|+++|.|+ .|++.|++++.... ...+++|+++|+.++.+ .
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA-~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~-----~~~ri~~~~~d~~~~l~~~~ 156 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLA-SLGLTVTAFEQHPAVACLLSDGIRRALLNPETQD-----TAARINLHFGNAAEQMPALV 156 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHH-HTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHH-----HHTTEEEEESCHHHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHHH-HhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhC-----CccCeEEEECCHHHHHHhhh
Confidence 45789999999999999999 5577899999999 99999988764321 01248999999987522 2
Q ss_pred C--CccchhhhhhHHhh
Q 024811 228 T--GRYDVIWVQWCIGH 242 (262)
Q Consensus 228 ~--~~yDlI~s~~vl~h 242 (262)
+ ++||+|++...++|
T Consensus 157 ~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 157 KTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHHCCCSEEEECCCC--
T ss_pred ccCCCccEEEECCCCCC
Confidence 2 58999999765555
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.9e-09 Score=98.94 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=77.9
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC---------------------------------------CcEEEEeCCHHHHHHH
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDAA 196 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~---------------------------------------~~V~~VD~s~~mld~A 196 (262)
.++.+|||.+||+|.++..++.... .+|.++|.++.|++.|
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 3567999999999999999984321 3699999999999999
Q ss_pred HhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHh-hcCc-hhHHHHHHHHHhhccC
Q 024811 197 RESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLTD-DDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 197 r~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~-hltD-~el~~~l~~~~~~LkP 261 (262)
++++..+. ....++|.++|+.++.++ .+||+|+++.+++ .+.+ +++..+++.+.+.|++
T Consensus 274 r~Na~~~g-----l~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~ 334 (385)
T 3ldu_A 274 RENAEIAG-----VDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK 334 (385)
T ss_dssp HHHHHHHT-----CGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC-----CCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh
Confidence 99986541 123689999999998764 5899999998753 3432 4566788888777764
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.6e-09 Score=98.81 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=76.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC---------------------------------------CcEEEEeCCHHHHHHH
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDAA 196 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~---------------------------------------~~V~~VD~s~~mld~A 196 (262)
.++.+|||.+||+|.++..++.... .+|+++|.|+.|++.|
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 3567899999999999999884322 2499999999999999
Q ss_pred HhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHh-hcCc-hhHHHHHHHHHhhccC
Q 024811 197 RESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLTD-DDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 197 r~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~-hltD-~el~~~l~~~~~~LkP 261 (262)
++++..+. ....++|+++|+.++.++ .+||+|+++.+++ .+.+ +++..+.+.+.+.|++
T Consensus 280 r~Na~~~g-----l~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~ 340 (393)
T 3k0b_A 280 KQNAVEAG-----LGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR 340 (393)
T ss_dssp HHHHHHTT-----CTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC-----CCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc
Confidence 99986541 123589999999998765 5899999997643 2333 4556777777777664
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-09 Score=99.03 Aligned_cols=75 Identities=20% Similarity=0.186 Sum_probs=60.5
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CC-------
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ET------- 228 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~------- 228 (262)
+.+|||+|||+|.++..|+ +.+.+|++||.|+.|++.|++++... ...+++|+++|++++.+ ..
T Consensus 214 ~~~vLDl~cG~G~~~l~la-~~~~~V~gvd~~~~ai~~a~~n~~~n------g~~~v~~~~~d~~~~~~~~~~~~~~~~l 286 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALA-RNFDRVLATEIAKPSVAAAQYNIAAN------HIDNVQIIRMAAEEFTQAMNGVREFNRL 286 (369)
T ss_dssp CSEEEEESCTTSHHHHHHG-GGSSEEEEECCCHHHHHHHHHHHHHT------TCCSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred CCEEEEccCCCCHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEECCHHHHHHHHhhccccccc
Confidence 5689999999999999999 66789999999999999999997542 23478999999877521 11
Q ss_pred -------CccchhhhhhH
Q 024811 229 -------GRYDVIWVQWC 239 (262)
Q Consensus 229 -------~~yDlI~s~~v 239 (262)
.+||+|++...
T Consensus 287 ~~~~~~~~~fD~Vv~dPP 304 (369)
T 3bt7_A 287 QGIDLKSYQCETIFVDPP 304 (369)
T ss_dssp GGSCGGGCCEEEEEECCC
T ss_pred cccccccCCCCEEEECcC
Confidence 27999987643
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-09 Score=99.64 Aligned_cols=90 Identities=12% Similarity=0.018 Sum_probs=69.3
Q ss_pred CCceeeEeeccccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~--~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||+|||+|.++..+++. ...+|+++|+++.+++.| .+++++++|+.++.+. ++||+|
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------~~~~~~~~D~~~~~~~-~~fD~I 102 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILADFLLWEPG-EAFDLI 102 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEESCGGGCCCS-SCEEEE
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------CCCcEEeCChhhcCcc-CCCCEE
Confidence 3569999999999999999954 246899999999999766 1578999999887654 689999
Q ss_pred hhhhHHhh----------cCchh-----------------HHHHHHHHHhhccCC
Q 024811 235 WVQWCIGH----------LTDDD-----------------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~h----------ltD~e-----------------l~~~l~~~~~~LkPG 262 (262)
+++.++.. +.++. ...|+.++.++|+||
T Consensus 103 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~ 157 (421)
T 2ih2_A 103 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPG 157 (421)
T ss_dssp EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEE
T ss_pred EECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCC
Confidence 99865432 22221 125789999999885
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-08 Score=95.96 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=78.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC---------------------------------------CcEEEEeCCHHHHHHH
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDAA 196 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~---------------------------------------~~V~~VD~s~~mld~A 196 (262)
.++..+||.+||+|.+....+.... .+|.++|.|+.|++.|
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 3567899999999999999883322 2499999999999999
Q ss_pred HhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHh-hcCc-hhHHHHHHHHHhhccC
Q 024811 197 RESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLTD-DDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 197 r~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~-hltD-~el~~~l~~~~~~LkP 261 (262)
++|+..+. ....++|+++|+.++.++ .+||+|+++.+++ .+.+ +++..+++.+.+.|++
T Consensus 273 r~Na~~~g-----l~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~ 333 (384)
T 3ldg_A 273 RKNAREVG-----LEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAP 333 (384)
T ss_dssp HHHHHHTT-----CTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC-----CCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh
Confidence 99986542 123589999999998765 5899999997653 3433 5677788888887765
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.2e-09 Score=93.29 Aligned_cols=73 Identities=10% Similarity=0.079 Sum_probs=57.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCc----EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCC--
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNE----VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-- 229 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~----V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~-- 229 (262)
.++.+|||||||+|.+|..|+ +.+.. |++||.|+.|++.++++. . .+++++++|+.+++++.-
T Consensus 41 ~~~~~VLEIG~G~G~lt~~La-~~~~~~~~~V~avDid~~~l~~a~~~~-~---------~~v~~i~~D~~~~~~~~~~~ 109 (279)
T 3uzu_A 41 ERGERMVEIGPGLGALTGPVI-ARLATPGSPLHAVELDRDLIGRLEQRF-G---------ELLELHAGDALTFDFGSIAR 109 (279)
T ss_dssp CTTCEEEEECCTTSTTHHHHH-HHHCBTTBCEEEEECCHHHHHHHHHHH-G---------GGEEEEESCGGGCCGGGGSC
T ss_pred CCcCEEEEEccccHHHHHHHH-HhCCCcCCeEEEEECCHHHHHHHHHhc-C---------CCcEEEECChhcCChhHhcc
Confidence 357899999999999999999 54556 999999999999999983 1 378999999998865421
Q ss_pred ----ccchhhhhhH
Q 024811 230 ----RYDVIWVQWC 239 (262)
Q Consensus 230 ----~yDlI~s~~v 239 (262)
..+.|++|..
T Consensus 110 ~~~~~~~~vv~NlP 123 (279)
T 3uzu_A 110 PGDEPSLRIIGNLP 123 (279)
T ss_dssp SSSSCCEEEEEECC
T ss_pred cccCCceEEEEccC
Confidence 1235666653
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=9.6e-09 Score=90.79 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=59.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC--Cccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~--~~yD 232 (262)
.++.+|||+|||+|.+|..|+ +. ..+|++||.++.|++.++++ . ..+++++++|+.+++++. +.|
T Consensus 30 ~~~~~VLDiG~G~G~lt~~L~-~~~~~~v~avEid~~~~~~~~~~-~---------~~~v~~i~~D~~~~~~~~~~~~~- 97 (249)
T 3ftd_A 30 EEGNTVVEVGGGTGNLTKVLL-QHPLKKLYVIELDREMVENLKSI-G---------DERLEVINEDASKFPFCSLGKEL- 97 (249)
T ss_dssp CTTCEEEEEESCHHHHHHHHT-TSCCSEEEEECCCHHHHHHHTTS-C---------CTTEEEECSCTTTCCGGGSCSSE-
T ss_pred CCcCEEEEEcCchHHHHHHHH-HcCCCeEEEEECCHHHHHHHHhc-c---------CCCeEEEEcchhhCChhHccCCc-
Confidence 357799999999999999999 55 47999999999999999987 3 137899999999986542 123
Q ss_pred hhhhhhHHhhcCch
Q 024811 233 VIWVQWCIGHLTDD 246 (262)
Q Consensus 233 lI~s~~vl~hltD~ 246 (262)
.|+++.. .+++.+
T Consensus 98 ~vv~NlP-y~i~~~ 110 (249)
T 3ftd_A 98 KVVGNLP-YNVASL 110 (249)
T ss_dssp EEEEECC-TTTHHH
T ss_pred EEEEECc-hhccHH
Confidence 5666544 234443
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-09 Score=96.42 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=60.4
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--C---CCc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--E---TGR 230 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~---~~~ 230 (262)
++.+|||+|||+|..+..++... ..+|+++|.|+.|++.|++++... ..+++|+++|+.+++. . ..+
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~-------g~~v~~v~~d~~~l~~~l~~~g~~~ 98 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------SDRVSLFKVSYREADFLLKTLGIEK 98 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-------TTTEEEEECCGGGHHHHHHHTTCSC
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-------CCcEEEEECCHHHHHHHHHhcCCCC
Confidence 57799999999999999999543 368999999999999999998642 1478999999887631 1 147
Q ss_pred cchhhhhh
Q 024811 231 YDVIWVQW 238 (262)
Q Consensus 231 yDlI~s~~ 238 (262)
||.|++..
T Consensus 99 ~D~Vl~D~ 106 (301)
T 1m6y_A 99 VDGILMDL 106 (301)
T ss_dssp EEEEEEEC
T ss_pred CCEEEEcC
Confidence 99998753
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.70 E-value=6e-09 Score=99.97 Aligned_cols=101 Identities=14% Similarity=0.017 Sum_probs=75.1
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yD 232 (262)
.++.+|||+|||+|..|..|+.... ..|+++|+|+.+++.+++++... ...++.+++.|..++.. .+++||
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~------g~~nv~v~~~Da~~l~~~~~~~FD 177 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW------GVSNAIVTNHAPAELVPHFSGFFD 177 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH------TCSSEEEECCCHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEeCCHHHhhhhccccCC
Confidence 3578999999999999999995432 47999999999999999998654 23468899999877642 236899
Q ss_pred hhhhhhH---HhhcC-chhH----------------HHHHHHHHhhccCC
Q 024811 233 VIWVQWC---IGHLT-DDDF----------------VSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~v---l~hlt-D~el----------------~~~l~~~~~~LkPG 262 (262)
+|++... ++.+. +++. .++|..+.++|+||
T Consensus 178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 227 (456)
T 3m4x_A 178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNK 227 (456)
T ss_dssp EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEE
T ss_pred EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9997432 12111 1111 26899999999986
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.70 E-value=9.7e-09 Score=97.54 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=77.1
Q ss_pred CCceeeEeeccccHHHHHHHHhc--------------CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--------------~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~ 222 (262)
++.+|||.|||+|.+...++... ..++.++|.++.+++.|+.++..... ...+.+++++|..
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~----~~~~~~i~~gD~l 246 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI----GTDRSPIVCEDSL 246 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC----CSSCCSEEECCTT
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCC----CcCCCCEeeCCCC
Confidence 46799999999999999888431 35799999999999999988753210 0015678999988
Q ss_pred CCCCCCCccchhhhhhHHhhcCchh---------------HHHHHHHHHhhccCC
Q 024811 223 DFTPETGRYDVIWVQWCIGHLTDDD---------------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 223 ~~~~~~~~yDlI~s~~vl~hltD~e---------------l~~~l~~~~~~LkPG 262 (262)
..... .+||+|+++.++++....+ -..|+.++.+.|+||
T Consensus 247 ~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~g 300 (445)
T 2okc_A 247 EKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG 300 (445)
T ss_dssp TSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred CCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccC
Confidence 77554 4899999998877654321 137899999999985
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.2e-09 Score=94.77 Aligned_cols=83 Identities=18% Similarity=0.067 Sum_probs=63.0
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCC---cceEEEEcCCCCCCC-CCCccchh
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH---KATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~---~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
.+|||+|||+|..+..|+. .+.+|++||.++.+.+.+++++..++.+..... .+++++++|..++-. -..+||+|
T Consensus 90 ~~VLDl~~G~G~dal~lA~-~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV 168 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLAS-VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (258)
T ss_dssp CCEEETTCTTCHHHHHHHH-HTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEEcCCcCCHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence 7999999999999999994 466899999999998888887765432211111 468999999877522 12479999
Q ss_pred hhhhHHhh
Q 024811 235 WVQWCIGH 242 (262)
Q Consensus 235 ~s~~vl~h 242 (262)
++...+.+
T Consensus 169 ~lDP~y~~ 176 (258)
T 2oyr_A 169 YLDPMFPH 176 (258)
T ss_dssp EECCCCCC
T ss_pred EEcCCCCC
Confidence 99877655
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.64 E-value=7.8e-09 Score=91.63 Aligned_cols=73 Identities=8% Similarity=0.062 Sum_probs=57.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC-----
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET----- 228 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~--V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~----- 228 (262)
.++.+|||||||+|.+|. +. + +.+ |++||+++.|++.+++++.. ..+++++++|+.+++.+.
T Consensus 20 ~~~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~~ 88 (252)
T 1qyr_A 20 QKGQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPFL--------GPKLTIYQQDAMTFNFGELAEKM 88 (252)
T ss_dssp CTTCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTTT--------GGGEEEECSCGGGCCHHHHHHHH
T ss_pred CCcCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhcc--------CCceEEEECchhhCCHHHhhccc
Confidence 356799999999999999 65 4 567 99999999999999998742 247899999998875431
Q ss_pred CccchhhhhhH
Q 024811 229 GRYDVIWVQWC 239 (262)
Q Consensus 229 ~~yDlI~s~~v 239 (262)
+..|.|++|..
T Consensus 89 ~~~~~vvsNlP 99 (252)
T 1qyr_A 89 GQPLRVFGNLP 99 (252)
T ss_dssp TSCEEEEEECC
T ss_pred CCceEEEECCC
Confidence 12467777754
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-08 Score=96.25 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=62.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC--CCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~--~~~yDlI 234 (262)
++.+|||+|||+|..+..|+ +.+.+|++||.|+.|++.|++++.... ....+++|+++|+.++-+. .++||+|
T Consensus 93 ~g~~VLDLgcG~G~~al~LA-~~g~~V~~VD~s~~~l~~Ar~N~~~~~----~gl~~i~~i~~Da~~~L~~~~~~~fDvV 167 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALM-SKASQGIYIERNDETAVAARHNIPLLL----NEGKDVNILTGDFKEYLPLIKTFHPDYI 167 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHS----CTTCEEEEEESCGGGSHHHHHHHCCSEE
T ss_pred CCCEEEEeCCCchHHHHHHH-hcCCEEEEEECCHHHHHHHHHhHHHhc----cCCCcEEEEECcHHHhhhhccCCCceEE
Confidence 36799999999999999999 667899999999999999999986420 0124799999999986221 2489999
Q ss_pred hhhh
Q 024811 235 WVQW 238 (262)
Q Consensus 235 ~s~~ 238 (262)
++..
T Consensus 168 ~lDP 171 (410)
T 3ll7_A 168 YVDP 171 (410)
T ss_dssp EECC
T ss_pred EECC
Confidence 9964
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.41 E-value=3.3e-07 Score=83.45 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=60.9
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC---Cc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GR 230 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~---~~ 230 (262)
.++.+|||+|||+|..|..|+... ...|+++|.++.+++.+++++... ...++.++++|+.++.+.. .+
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~------g~~~v~~~~~D~~~~~~~~~~~~~ 174 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA------GVSCCELAEEDFLAVSPSDPRYHE 174 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCGGGSCTTCGGGTT
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCChHhcCccccccCC
Confidence 357899999999999999999543 257999999999999999998653 2347899999988775421 47
Q ss_pred cchhhh
Q 024811 231 YDVIWV 236 (262)
Q Consensus 231 yDlI~s 236 (262)
||.|++
T Consensus 175 fD~Vl~ 180 (309)
T 2b9e_A 175 VHYILL 180 (309)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 999997
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-07 Score=85.02 Aligned_cols=86 Identities=8% Similarity=0.003 Sum_probs=60.5
Q ss_pred CCCCceeeEeec------cccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE-EEcCCCCCC
Q 024811 155 NNQHLVALDCGS------GIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF-FCVPLQDFT 225 (262)
Q Consensus 155 ~~~~~~VLDlGc------GtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f-~~~d~~~~~ 225 (262)
..++.+|||+|| |+|. ..++... ..+|+++|+|+. +. +++| +++|+.++.
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v~-----------~v~~~i~gD~~~~~ 119 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------VS-----------DADSTLIGDCATVH 119 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------BC-----------SSSEEEESCGGGCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------CC-----------CCEEEEECccccCC
Confidence 446789999999 5576 3344232 257999999998 21 4678 999998876
Q ss_pred CCCCccchhhhhhHHh--------hcCchh-HHHHHHHHHhhccCC
Q 024811 226 PETGRYDVIWVQWCIG--------HLTDDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 ~~~~~yDlI~s~~vl~--------hltD~e-l~~~l~~~~~~LkPG 262 (262)
+. ++||+|+|+...+ |....+ +..+|+.+.++|+||
T Consensus 120 ~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpG 164 (290)
T 2xyq_A 120 TA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG 164 (290)
T ss_dssp CS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEE
T ss_pred cc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCC
Confidence 54 6899999974311 111122 347999999999996
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2e-07 Score=83.86 Aligned_cols=109 Identities=10% Similarity=-0.005 Sum_probs=64.6
Q ss_pred HHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcC
Q 024811 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (262)
Q Consensus 142 L~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d 220 (262)
|..+..+.+ +.++.+|||+|||+|..+..++.+. ...|.++|.+..+...... .. ....++.++..+
T Consensus 63 L~ei~ek~~----l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~-------~~g~~ii~~~~~ 130 (277)
T 3evf_A 63 LRWFHERGY----VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQ-------SLGWNIITFKDK 130 (277)
T ss_dssp HHHHHHTTS----SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CC-------BTTGGGEEEECS
T ss_pred HHHHHHhCC----CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cC-------cCCCCeEEEecc
Confidence 555554322 4567899999999999999988442 3467788876443100000 00 011244445555
Q ss_pred CCCCCCCCCccchhhhhhHHh---hcCch-hHHHHHHHHHhhccCC
Q 024811 221 LQDFTPETGRYDVIWVQWCIG---HLTDD-DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 221 ~~~~~~~~~~yDlI~s~~vl~---hltD~-el~~~l~~~~~~LkPG 262 (262)
++......++||+|+|..+.+ |..|. ....+|+.+.++|+||
T Consensus 131 ~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG 176 (277)
T 3evf_A 131 TDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACG 176 (277)
T ss_dssp CCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCC
Confidence 543333446899999986443 22222 2224578889999997
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-07 Score=88.21 Aligned_cols=99 Identities=13% Similarity=0.036 Sum_probs=70.7
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhccccccc-C-C-------CCCcceEEEEcCCCCCCCC
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHM-A-P-------DMHKATNFFCVPLQDFTPE 227 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~-~-~-------~~~~~v~f~~~d~~~~~~~ 227 (262)
+.+|||+|||+|.++..++.+. ..+|+++|.++.+++.+++|+...... . . ....++.++++|+.++...
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 6789999999999999999653 357999999999999999998642000 0 0 0112488999998765321
Q ss_pred -CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 228 -TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 228 -~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++||+|++... . ... .++..+.+.|+||
T Consensus 128 ~~~~fD~I~lDP~-~---~~~--~~l~~a~~~lk~g 157 (378)
T 2dul_A 128 RHRYFHFIDLDPF-G---SPM--EFLDTALRSAKRR 157 (378)
T ss_dssp STTCEEEEEECCS-S---CCH--HHHHHHHHHEEEE
T ss_pred ccCCCCEEEeCCC-C---CHH--HHHHHHHHhcCCC
Confidence 247999996531 1 122 6888888888874
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-07 Score=87.62 Aligned_cols=95 Identities=9% Similarity=0.048 Sum_probs=71.4
Q ss_pred CCceeeEeeccccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcc-eEEEEcCCCCCCC--CCCcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCVPLQDFTP--ETGRY 231 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~-v~f~~~d~~~~~~--~~~~y 231 (262)
++.+|||++||+|.++..++.+. + .+|+++|.++.+++.+++|+..- ....+ +.++++|+.++.. ..++|
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~N-----gl~~~~v~v~~~Da~~~l~~~~~~~f 126 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLN-----NIPEDRYEIHGMEANFFLRKEWGFGF 126 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHT-----TCCGGGEEEECSCHHHHHHSCCSSCE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHh-----CCCCceEEEEeCCHHHHHHHhhCCCC
Confidence 36799999999999999999542 3 57999999999999999998642 11123 8999999866522 12579
Q ss_pred chhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|++.. + .... .++..+.+.|+||
T Consensus 127 D~V~lDP---~-g~~~--~~l~~a~~~Lk~g 151 (392)
T 3axs_A 127 DYVDLDP---F-GTPV--PFIESVALSMKRG 151 (392)
T ss_dssp EEEEECC---S-SCCH--HHHHHHHHHEEEE
T ss_pred cEEEECC---C-cCHH--HHHHHHHHHhCCC
Confidence 9999876 1 2222 5788888888775
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-07 Score=84.49 Aligned_cols=107 Identities=10% Similarity=-0.018 Sum_probs=62.8
Q ss_pred HHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEc-
Q 024811 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV- 219 (262)
Q Consensus 142 L~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~- 219 (262)
|..+..+.+ +.++.+|||||||+|..+..++.+. ...|.++|.+..+...+..+.. ...++.++..
T Consensus 79 L~ei~eK~~----Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~--------~g~~ii~~~~~ 146 (282)
T 3gcz_A 79 LRWMEERGY----VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTT--------LGWNLIRFKDK 146 (282)
T ss_dssp HHHHHHTTS----CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCB--------TTGGGEEEECS
T ss_pred HHHHHHhcC----CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccccc--------CCCceEEeeCC
Confidence 555555432 4567899999999999999988433 3468888887765322221100 1123333333
Q ss_pred -CCCCCCCCCCccchhhhhhHHh---hcCch-hHHHHHHHHHhhccCC
Q 024811 220 -PLQDFTPETGRYDVIWVQWCIG---HLTDD-DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 220 -d~~~~~~~~~~yDlI~s~~vl~---hltD~-el~~~l~~~~~~LkPG 262 (262)
|+.++ ...++|+|+|-.+.+ +..|. ....+|.-+.++|+||
T Consensus 147 ~dv~~l--~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g 192 (282)
T 3gcz_A 147 TDVFNM--EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEG 192 (282)
T ss_dssp CCGGGS--CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhc--CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCC
Confidence 44333 346899999976543 11122 2223577777888775
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=7.9e-07 Score=89.36 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=72.7
Q ss_pred CCceeeEeeccccHHHHHHHHhc-------------------------------------------CCcEEEEeCCHHHH
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSHFL 193 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-------------------------------------------~~~V~~VD~s~~ml 193 (262)
++.+|||.+||+|.+...++... ...|.++|.++.|+
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 56789999999999999888431 13699999999999
Q ss_pred HHHHhhcccccccCCCCCcceEEEEcCCCCCCCC--CCccchhhhhhHHhh-cC-chhHHHHHHHHHhhcc
Q 024811 194 DAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIGH-LT-DDDFVSFFKRAKVNHS 260 (262)
Q Consensus 194 d~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~--~~~yDlI~s~~vl~h-lt-D~el~~~l~~~~~~Lk 260 (262)
+.|+.|+..+. ....+.|.++|+.++.++ .++||+|++|.+.+. +. ++++..+.+.+.+.|+
T Consensus 270 ~~A~~N~~~ag-----v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk 335 (703)
T 3v97_A 270 QRARTNARLAG-----IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK 335 (703)
T ss_dssp HHHHHHHHHTT-----CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-----CCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHH
Confidence 99999987642 223589999999987543 238999999977542 33 3455566666655544
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-06 Score=86.55 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=69.1
Q ss_pred CceeeEeeccccHHHHHHH---HhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 158 HLVALDCGSGIGRITKNLL---IRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La---~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
...|||+|||+|-++...+ ++... +|.+||.|+ |...|++....- .-...|+++.+|++++..+ ++.|
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N-----~~~dkVtVI~gd~eev~LP-EKVD 430 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFE-----EWGSQVTVVSSDMREWVAP-EKAD 430 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHH-----TTGGGEEEEESCTTTCCCS-SCEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhc-----cCCCeEEEEeCcceeccCC-cccC
Confidence 4579999999999954444 22233 589999997 666777765321 2345799999999999876 6999
Q ss_pred hhhhhhHHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
+|||-|. +++-. +-..+.+....+.||||
T Consensus 431 IIVSEwM-G~fLl~E~mlevL~Ardr~LKPg 460 (637)
T 4gqb_A 431 IIVSELL-GSFADNELSPECLDGAQHFLKDD 460 (637)
T ss_dssp EEECCCC-BTTBGGGCHHHHHHHHGGGEEEE
T ss_pred EEEEEcC-cccccccCCHHHHHHHHHhcCCC
Confidence 9999874 33333 33335677778889885
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=1e-06 Score=85.93 Aligned_cols=100 Identities=9% Similarity=-0.102 Sum_probs=74.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc-------------------CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcc----
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-------------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA---- 213 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-------------------~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~---- 213 (262)
++.+|||.+||+|.+...++... ..++.++|.++.++..|+.++... ....
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~------gi~~~~~~ 242 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH------DIEGNLDH 242 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT------TCCCBGGG
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHh------CCCccccc
Confidence 46799999999999998887432 136999999999999999887532 1122
Q ss_pred -eEEEEcCCCCCCC-CCCccchhhhhhHHhhcCch------------hHHHHHHHHHhhccCC
Q 024811 214 -TNFFCVPLQDFTP-ETGRYDVIWVQWCIGHLTDD------------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 214 -v~f~~~d~~~~~~-~~~~yDlI~s~~vl~hltD~------------el~~~l~~~~~~LkPG 262 (262)
.+++++|.....+ ...+||+|+++.+++..... .-..|+.++.+.|+||
T Consensus 243 ~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g 305 (541)
T 2ar0_A 243 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 305 (541)
T ss_dssp TBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred cCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC
Confidence 6788998876432 23589999999887654321 1126999999999985
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.7e-06 Score=77.23 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=76.3
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
.+.+||=||.|.|.+++.+++.. ..+|++||+++..++.|++.+...... .-..++++++..|...|-. ..++||+|
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~-~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAG-SYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTT-GGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcccccc-ccCCCcEEEEechHHHHHhhccccCCEE
Confidence 56799999999999999999432 468999999999999999987532110 0124689999999988742 34689999
Q ss_pred hhhhH-----HhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWC-----IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~v-----l~hltD~el~~~l~~~~~~LkPG 262 (262)
++-.. -.+|-.. +|++.|++.|+||
T Consensus 162 i~D~~dp~~~~~~L~t~---eFy~~~~~~L~p~ 191 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTS---AFYEGCKRCLNPG 191 (294)
T ss_dssp EESCCCCCCTTCCSSCC---HHHHHHHHTEEEE
T ss_pred EEeCCCcCCCchhhcCH---HHHHHHHHHhCCC
Confidence 97532 1222222 6999999999985
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1e-06 Score=88.28 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=71.0
Q ss_pred CceeeEeeccccHHHHHHHHh---cC-----------CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC
Q 024811 158 HLVALDCGSGIGRITKNLLIR---YF-----------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~---~~-----------~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~ 223 (262)
...|||+|||+|-++...+.. .. .+|.+||.|+.++..++.+... .-...++++.+|+++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~N------g~~d~VtVI~gd~ee 483 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVR------TWKRRVTIIESDMRS 483 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHH------TTTTCSEEEESCGGG
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhc------CCCCeEEEEeCchhh
Confidence 357999999999997543311 11 2899999999877666655431 123469999999999
Q ss_pred CCCC-----CCccchhhhhhHHhhcCchh-HHHHHHHHHhhccCC
Q 024811 224 FTPE-----TGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 224 ~~~~-----~~~yDlI~s~~vl~hltD~e-l~~~l~~~~~~LkPG 262 (262)
+..+ .++.|+|||-|. +++-+.| ..+.|..+.+.|+||
T Consensus 484 v~lp~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~ 527 (745)
T 3ua3_A 484 LPGIAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPT 527 (745)
T ss_dssp HHHHHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTT
T ss_pred cccccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCC
Confidence 9652 369999999875 5554444 456888888999986
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.9e-05 Score=65.95 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=72.0
Q ss_pred HHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 138 s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
..+||...+. +..+|||+|| |.-|..++ +. ..+|+.||.+++..+.|+++++.+... ...++++
T Consensus 20 ~~~~L~~~l~---------~a~~VLEiGt--GySTl~lA-~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~---~~~~I~~ 84 (202)
T 3cvo_A 20 EAEALRMAYE---------EAEVILEYGS--GGSTVVAA-ELPGKHVTSVESDRAWARMMKAWLAANPPA---EGTEVNI 84 (202)
T ss_dssp HHHHHHHHHH---------HCSEEEEESC--SHHHHHHH-TSTTCEEEEEESCHHHHHHHHHHHHHSCCC---TTCEEEE
T ss_pred HHHHHHHHhh---------CCCEEEEECc--hHHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCCceEE
Confidence 4566766543 3568999998 57888888 54 578999999999999999999764210 0347899
Q ss_pred EEcCCCCC---------------C---------CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 217 FCVPLQDF---------------T---------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 217 ~~~d~~~~---------------~---------~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+|+.+. + ...++||+|++-.-.. ...+..+...|+||
T Consensus 85 ~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-------~~~~~~~l~~l~~G 147 (202)
T 3cvo_A 85 VWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR-------VGCALATAFSITRP 147 (202)
T ss_dssp EECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH-------HHHHHHHHHHCSSC
T ss_pred EEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc-------hhHHHHHHHhcCCC
Confidence 99997543 1 1226899999875211 14555567888886
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.8e-06 Score=69.86 Aligned_cols=75 Identities=9% Similarity=-0.011 Sum_probs=53.5
Q ss_pred CCceeeEeecccc-HHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC-Cccchh
Q 024811 157 QHLVALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG-~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~-~~yDlI 234 (262)
.+.+|||+|||.| +++..|+.+.+-+|+++|+++..++ |++.|+.+...+. ..||+|
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~---------------------~v~dDiF~P~~~~Y~~~DLI 93 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG---------------------IVRDDITSPRMEIYRGAALI 93 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT---------------------EECCCSSSCCHHHHTTEEEE
T ss_pred CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc---------------------eEEccCCCCcccccCCcCEE
Confidence 4679999999999 7999999547778999998877654 6667777643321 379999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHh
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKV 257 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~ 257 (262)
++.. +.+|+...+.++++
T Consensus 94 Ysir-----PP~El~~~i~~lA~ 111 (153)
T 2k4m_A 94 YSIR-----PPAEIHSSLMRVAD 111 (153)
T ss_dssp EEES-----CCTTTHHHHHHHHH
T ss_pred EEcC-----CCHHHHHHHHHHHH
Confidence 7754 34455555555544
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.92 E-value=9.3e-06 Score=75.97 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=62.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc-------C-------C--cEEEEeCCHHHHHHHHhhcccccccC-----CC-CCcce
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-------F-------N--EVDLLEPVSHFLDAARESLAPENHMA-----PD-MHKAT 214 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-------~-------~--~V~~VD~s~~mld~Ar~~l~~a~~~~-----~~-~~~~v 214 (262)
.+.+|+|+|||+|..|..++... + + +|.+-|+........=+.+....+.. .. ....-
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 36899999999999999884221 1 2 34455665555443333333221100 00 00011
Q ss_pred EEEE---cCCCCCCCCCCccchhhhhhHHhhcCc-h-----------------------------------hHHHHHHHH
Q 024811 215 NFFC---VPLQDFTPETGRYDVIWVQWCIGHLTD-D-----------------------------------DFVSFFKRA 255 (262)
Q Consensus 215 ~f~~---~d~~~~~~~~~~yDlI~s~~vl~hltD-~-----------------------------------el~~~l~~~ 255 (262)
.|+. +.+..-.++++++|+|+|+++|||+++ + |+..||+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2332 233222234579999999999999984 1 556789999
Q ss_pred HhhccCC
Q 024811 256 KVNHSQT 262 (262)
Q Consensus 256 ~~~LkPG 262 (262)
++.|+||
T Consensus 212 a~eL~pG 218 (374)
T 3b5i_A 212 AAEVKRG 218 (374)
T ss_dssp HHHEEEE
T ss_pred HHHhCCC
Confidence 9999997
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.84 E-value=1.2e-05 Score=72.62 Aligned_cols=81 Identities=19% Similarity=0.095 Sum_probs=63.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-----CCCc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----ETGR 230 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-----~~~~ 230 (262)
.+++.+||++||.|..|..|+.. ..+|.++|.++.+++.|++ +.. .++.|+++++.++.. ..++
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~---------~rv~lv~~~f~~l~~~L~~~g~~~ 89 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL---------PGLTVVQGNFRHLKRHLAALGVER 89 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC---------TTEEEEESCGGGHHHHHHHTTCSC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc---------CCEEEEECCcchHHHHHHHcCCCC
Confidence 35779999999999999999954 6689999999999999999 742 378999999887631 1246
Q ss_pred cchhhhhh--HHhhcCchh
Q 024811 231 YDVIWVQW--CIGHLTDDD 247 (262)
Q Consensus 231 yDlI~s~~--vl~hltD~e 247 (262)
+|.|++.. +.+|+.+++
T Consensus 90 vDgIL~DLGvSS~Qld~~~ 108 (285)
T 1wg8_A 90 VDGILADLGVSSFHLDDPS 108 (285)
T ss_dssp EEEEEEECSCCHHHHHCGG
T ss_pred cCEEEeCCccccccccccc
Confidence 89888642 456665554
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=2e-05 Score=73.69 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=55.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
+.++.+|||+||++|..|..|+ +.+..|++||+.+ |-..... .++++++..|...+.+..++||+|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~-~rg~~V~aVD~~~-l~~~l~~------------~~~V~~~~~d~~~~~~~~~~~D~v 274 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLV-KRNMWVYSVDNGP-MAQSLMD------------TGQVTWLREDGFKFRPTRSNISWM 274 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHH-HTTCEEEEECSSC-CCHHHHT------------TTCEEEECSCTTTCCCCSSCEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHH-HCCCEEEEEEhhh-cChhhcc------------CCCeEEEeCccccccCCCCCcCEE
Confidence 4468899999999999999999 6677999999763 2222111 347899999999998876789999
Q ss_pred hhhhH
Q 024811 235 WVQWC 239 (262)
Q Consensus 235 ~s~~v 239 (262)
+|-.+
T Consensus 275 vsDm~ 279 (375)
T 4auk_A 275 VCDMV 279 (375)
T ss_dssp EECCS
T ss_pred EEcCC
Confidence 98654
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.80 E-value=4.6e-05 Score=69.16 Aligned_cols=171 Identities=15% Similarity=0.126 Sum_probs=83.4
Q ss_pred CCCCceeecccCCCCCccCCHHHHHHHHhccccchhhhhhHh--HhhHHhhhh-ccchhhccc------cCCCCCCcccc
Q 024811 64 KESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQW--YREGISYWE-GVEASVDGV------LGGFGNVNEVD 134 (262)
Q Consensus 64 ~~~~~~~~~g~d~~g~ef~s~~e~W~~~~~~~~~~~~~~~~w--y~~~~~yW~-~~~~~~dgv------lgGy~~is~~d 134 (262)
.++|.+ -+|+..-|-...++.+.||+++.. -.+..| |... .-++ ......+.+ -|+| .|.
T Consensus 10 ~~~~~~-~~~~~rg~~~g~tlG~~wK~~LN~-----l~k~~F~~Yk~~-gi~Evdr~~ar~~l~~g~~~~g~y--~SR-- 78 (321)
T 3lkz_A 10 HSSGLV-PRGSHMGGAKGRTLGEVWKERLNQ-----MTKEEFTRYRKE-AIIEVDRSAAKHARKEGNVTGGHP--VSR-- 78 (321)
T ss_dssp -----------------CCSHHHHHHHHHTT-----SCHHHHHHHTTT-TCEEECCHHHHHHHHHTCCSSCCC--SST--
T ss_pred cccCcc-cccCcCCCCCCCchHHHHHHHHhc-----cCHHHHHHHhhc-CceeechHHHHHHHhcCcCcCCCc--cch--
Confidence 344444 456655566677999999999987 223333 2211 0011 010011111 1222 222
Q ss_pred hhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcc
Q 024811 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (262)
Q Consensus 135 i~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~ 213 (262)
+..-|..+....+ +.++.+|||+||++|..+...+.+.+ ..|.++|.-...-+. +...+ +-....
T Consensus 79 ---~~~KL~ei~~~~~----l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~------ql~w~l 144 (321)
T 3lkz_A 79 ---GTAKLRWLVERRF----LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQ------SYGWNI 144 (321)
T ss_dssp ---HHHHHHHHHHTTS----CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCC------BTTGGG
T ss_pred ---HHHHHHHHHHhcC----CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhh------hcCCcc
Confidence 2222555555432 45678999999999999998885543 468888875542210 00000 112345
Q ss_pred eEEEEc-CCCCCCCCCCccchhhhhhHHhhcCchhH-----HHHHHHHHhhccCC
Q 024811 214 TNFFCV-PLQDFTPETGRYDVIWVQWCIGHLTDDDF-----VSFFKRAKVNHSQT 262 (262)
Q Consensus 214 v~f~~~-d~~~~~~~~~~yDlI~s~~vl~hltD~el-----~~~l~~~~~~LkPG 262 (262)
+.|... |+..+++ .++|+|+|--. .--+++++ ..+|.-+.+.|++|
T Consensus 145 V~~~~~~Dv~~l~~--~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~ 196 (321)
T 3lkz_A 145 VTMKSGVDVFYRPS--ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRG 196 (321)
T ss_dssp EEEECSCCTTSSCC--CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEeccCHhhCCC--CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccC
Confidence 778776 8877765 47999998643 22222221 12555556666654
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.2e-05 Score=73.65 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=53.9
Q ss_pred CceeeEeeccccHHHHHHHHh-------------c---CC--cEEEEeCC-----------HHHHHHHHhhcccccccCC
Q 024811 158 HLVALDCGSGIGRITKNLLIR-------------Y---FN--EVDLLEPV-----------SHFLDAARESLAPENHMAP 208 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~-------------~---~~--~V~~VD~s-----------~~mld~Ar~~l~~a~~~~~ 208 (262)
..+|+|+||++|..|..++.. . .+ +|..-|+. +.+.+.+++....
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~------ 126 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR------ 126 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC------
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC------
Confidence 578999999999999988855 1 12 35556777 6666655443211
Q ss_pred CCCcceEEEEcCCCCC---CCCCCccchhhhhhHHhhcCch
Q 024811 209 DMHKATNFFCVPLQDF---TPETGRYDVIWVQWCIGHLTDD 246 (262)
Q Consensus 209 ~~~~~v~f~~~d~~~~---~~~~~~yDlI~s~~vl~hltD~ 246 (262)
.....|+.+.-..| .++.+++|+|+|+++|||+++.
T Consensus 127 --~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~ 165 (384)
T 2efj_A 127 --KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQV 165 (384)
T ss_dssp --CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSS
T ss_pred --CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCC
Confidence 01235555555444 2345799999999999999864
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.3e-05 Score=76.57 Aligned_cols=101 Identities=14% Similarity=0.004 Sum_probs=73.5
Q ss_pred CCceeeEeeccccHHHHHHHHhc----CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--C-CCCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--T-PETG 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~----~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~-~~~~ 229 (262)
++.+|+|.+||+|.+...++... ..++.++|.++.++..|+.++.... ....+..+.++|.... + ....
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g----i~~~~~~I~~gDtL~~d~p~~~~~ 296 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG----VPIENQFLHNADTLDEDWPTQEPT 296 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT----CCGGGEEEEESCTTTSCSCCSSCC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC----CCcCccceEecceecccccccccc
Confidence 46799999999999999888442 3579999999999999998875421 0113578899998755 2 2246
Q ss_pred ccchhhhhhHHhhcC--------c--------------hhHHHHHHHHHhhcc-CC
Q 024811 230 RYDVIWVQWCIGHLT--------D--------------DDFVSFFKRAKVNHS-QT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hlt--------D--------------~el~~~l~~~~~~Lk-PG 262 (262)
+||+|++|.++..-. + .+ -.|+..+.+.|+ ||
T Consensus 297 ~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~g 351 (542)
T 3lkd_A 297 NFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDN 351 (542)
T ss_dssp CBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTT
T ss_pred cccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCc
Confidence 899999997653210 1 11 148999999999 75
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.77 E-value=2.7e-05 Score=79.24 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=55.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcC----CcEEEEeCCHHHHHHH--HhhcccccccCCCCCcceEEEEcCCCCCCC-CCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAA--RESLAPENHMAPDMHKATNFFCVPLQDFTP-ETG 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~----~~V~~VD~s~~mld~A--r~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~ 229 (262)
++.+|||.|||+|.+...++.... .++.++|.++.+++.| +.++..... ........+...|+.+..+ ...
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~L--lhGi~~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQL--VSSNNAPTITGEDVCSLNPEDFA 398 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTT--CBTTBCCEEECCCGGGCCGGGGT
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhh--hcCCCcceEEecchhcccccccC
Confidence 467999999999999999994332 3699999999999999 544422000 0111223555666655321 236
Q ss_pred ccchhhhhhHH
Q 024811 230 RYDVIWVQWCI 240 (262)
Q Consensus 230 ~yDlI~s~~vl 240 (262)
+||+|++|.++
T Consensus 399 kFDVVIgNPPY 409 (878)
T 3s1s_A 399 NVSVVVMNPPY 409 (878)
T ss_dssp TEEEEEECCBC
T ss_pred CCCEEEECCCc
Confidence 89999999875
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=2.7e-05 Score=70.59 Aligned_cols=98 Identities=11% Similarity=-0.029 Sum_probs=57.0
Q ss_pred CCCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEc--CCCCCCCCCCcc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQDFTPETGRY 231 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~--d~~~~~~~~~~y 231 (262)
..++.+|||+||++|..+..++... ...|+++|.+..+...... .. ....++..... |+..+. .++|
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~-------~~~~~iv~~~~~~di~~l~--~~~~ 148 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQ-------TLGWNIVKFKDKSNVFTMP--TEPS 148 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CC-------BTTGGGEEEECSCCTTTSC--CCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-cc-------ccCCceEEeecCceeeecC--CCCc
Confidence 3467899999999999999999432 3468888886543111000 00 00112222333 344443 3689
Q ss_pred chhhhhhHHh---hcCchh-HHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIG---HLTDDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~---hltD~e-l~~~l~~~~~~LkPG 262 (262)
|+|+|..+-+ +..|.. ...+|.-+.++|+||
T Consensus 149 DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG 183 (300)
T 3eld_A 149 DTLLCDIGESSSNPLVERDRTMKVLENFERWKHVN 183 (300)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred CEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999965433 111221 124577888899987
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.7e-05 Score=74.34 Aligned_cols=106 Identities=11% Similarity=0.002 Sum_probs=73.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccC--CCCCcceEEEEcCCCCCC----CCCCc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA--PDMHKATNFFCVPLQDFT----PETGR 230 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~--~~~~~~v~f~~~d~~~~~----~~~~~ 230 (262)
++.+||=||.|.|.+.+.+++....+|++||+++..++.|++.+....... .-..++++++..|..+|- ...++
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~ 284 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE 284 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence 357999999999999999995456789999999999999999875321110 001235788888887652 12358
Q ss_pred cchhhhhhH-------HhhcCchhH-HHHHHHHHhhccCC
Q 024811 231 YDVIWVQWC-------IGHLTDDDF-VSFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~v-------l~hltD~el-~~~l~~~~~~LkPG 262 (262)
||+|+.-.. -.+.....+ .+|++.|++.|+||
T Consensus 285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~ 324 (381)
T 3c6k_A 285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQD 324 (381)
T ss_dssp EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEE
T ss_pred eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCC
Confidence 999997521 122222233 36999999999985
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.61 E-value=2e-05 Score=76.91 Aligned_cols=99 Identities=9% Similarity=-0.142 Sum_probs=68.7
Q ss_pred CceeeEeeccccHHHHHHHHhc----------------CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCC
Q 024811 158 HLVALDCGSGIGRITKNLLIRY----------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~----------------~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~ 221 (262)
..+|||.+||+|.+...++... ..++.++|.++.++..|+.++.... ...++.+.++|.
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g-----i~~~i~i~~gDt 319 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG-----IDFNFGKKNADS 319 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT-----CCCBCCSSSCCT
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC-----CCcccceeccch
Confidence 3499999999999988775221 2368999999999999999875421 111233467776
Q ss_pred CCCCC-CCCccchhhhhhHHhh-------------------------cCc---hhHHHHHHHHHhhccCC
Q 024811 222 QDFTP-ETGRYDVIWVQWCIGH-------------------------LTD---DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 222 ~~~~~-~~~~yDlI~s~~vl~h-------------------------ltD---~el~~~l~~~~~~LkPG 262 (262)
...+. ...+||+|++|.++.. ++. .+ ..|+..+.+.|+||
T Consensus 320 L~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~-~~Fl~~~l~~Lk~g 388 (544)
T 3khk_A 320 FLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNAN-FAWMLHMLYHLAPT 388 (544)
T ss_dssp TTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTH-HHHHHHHHHTEEEE
T ss_pred hcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchh-HHHHHHHHHHhccC
Confidence 54432 2368999999987653 111 11 15899999999885
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=3.9e-05 Score=68.34 Aligned_cols=107 Identities=11% Similarity=-0.028 Sum_probs=58.6
Q ss_pred HHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEc
Q 024811 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (262)
Q Consensus 142 L~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~ 219 (262)
|..+..+.+ ++++.+|||+||++|..+...+ +. ...|.+.... ++. . ....... ......+.|.++
T Consensus 62 L~EIdeK~l----ikpg~~VVDLGaAPGGWSQvAa-~~~~vg~V~G~vig---~D~-~-~~P~~~~--~~Gv~~i~~~~G 129 (269)
T 2px2_A 62 LRWLVERRF----VQPIGKVVDLGCGRGGWSYYAA-TMKNVQEVRGYTKG---GPG-H-EEPMLMQ--SYGWNIVTMKSG 129 (269)
T ss_dssp HHHHHHTTS----CCCCEEEEEETCTTSHHHHHHT-TSTTEEEEEEECCC---STT-S-CCCCCCC--STTGGGEEEECS
T ss_pred HHHHHHcCC----CCCCCEEEEcCCCCCHHHHHHh-hhcCCCCceeEEEc---ccc-c-cCCCccc--CCCceEEEeecc
Confidence 555554433 4578999999999999999999 43 2233444332 221 0 0000000 001123355546
Q ss_pred -CCCCCCCCCCccchhhhhhH---HhhcCchh-HHHHHHHHHhhccCC
Q 024811 220 -PLQDFTPETGRYDVIWVQWC---IGHLTDDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 220 -d~~~~~~~~~~yDlI~s~~v---l~hltD~e-l~~~l~~~~~~LkPG 262 (262)
|+.+..+ .++|+|+|-.. =+...|.. ...+|.-+.++|+||
T Consensus 130 ~Df~~~~~--~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~g 175 (269)
T 2px2_A 130 VDVFYKPS--EISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRG 175 (269)
T ss_dssp CCGGGSCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccCCCC--CCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcC
Confidence 8887543 47999998542 11222221 112677777888886
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.55 E-value=4.7e-05 Score=70.85 Aligned_cols=101 Identities=16% Similarity=0.104 Sum_probs=71.0
Q ss_pred CCceeeEeeccccHHHHHHHHh---------------cCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEc
Q 024811 157 QHLVALDCGSGIGRITKNLLIR---------------YFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~---------------~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~ 219 (262)
...+|+|+||++|..|..++.. ..+ +|...|+........-+.+..-.. .....|+.+
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~-----~~~~~f~~g 125 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND-----VDGVCFING 125 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS-----CTTCEEEEE
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcc-----cCCCEEEEe
Confidence 3578999999999988876633 123 466779999888888887753210 012245444
Q ss_pred CCCCC---CCCCCccchhhhhhHHhhcCc-h------------------------------hHHHHHHHHHhhccCC
Q 024811 220 PLQDF---TPETGRYDVIWVQWCIGHLTD-D------------------------------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 220 d~~~~---~~~~~~yDlI~s~~vl~hltD-~------------------------------el~~~l~~~~~~LkPG 262 (262)
....| .++.+++|+|+|+++|||+++ + |+..||+.-++.|+||
T Consensus 126 vpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pG 202 (359)
T 1m6e_X 126 VPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPG 202 (359)
T ss_dssp EESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTT
T ss_pred cchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333 234579999999999999976 1 4556799999999997
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.54 E-value=2.9e-05 Score=68.89 Aligned_cols=104 Identities=12% Similarity=0.115 Sum_probs=64.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc------CC-------cEEEEeCCH---HHHH-----------HHHhhccccccc---
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY------FN-------EVDLLEPVS---HFLD-----------AARESLAPENHM--- 206 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~------~~-------~V~~VD~s~---~mld-----------~Ar~~l~~a~~~--- 206 (262)
+..+|||+|+|+|..+..++... .+ +++.+|..| +++. .|++.+......
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 35799999999999998877332 22 678889776 5555 455544321000
Q ss_pred -----CCCCCcceEEEEcCCCCCCCC-C----Cccchhhhh-hHHhhcCchhH--HHHHHHHHhhccCC
Q 024811 207 -----APDMHKATNFFCVPLQDFTPE-T----GRYDVIWVQ-WCIGHLTDDDF--VSFFKRAKVNHSQT 262 (262)
Q Consensus 207 -----~~~~~~~v~f~~~d~~~~~~~-~----~~yDlI~s~-~vl~hltD~el--~~~l~~~~~~LkPG 262 (262)
......+++++.+|+.+.-+. + .+||+|+.- ++-.. ++++ ..+|+.+.+.|+||
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~--~p~lw~~~~l~~l~~~L~pG 206 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAK--NPDMWTQNLFNAMARLARPG 206 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTT--CGGGCCHHHHHHHHHHEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCccc--ChhhcCHHHHHHHHHHcCCC
Confidence 011224678899998774221 1 279999874 22111 2221 37999999999986
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00014 Score=65.16 Aligned_cols=46 Identities=26% Similarity=0.194 Sum_probs=41.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a 203 (262)
++..|||++||+|.++..++ ..+.++.++|.++.+++.|++++..+
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~-~~g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAA-RWGRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 57899999999999999988 77889999999999999999998653
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=7.5e-05 Score=65.94 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=56.1
Q ss_pred HHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEc-
Q 024811 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV- 219 (262)
Q Consensus 142 L~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~- 219 (262)
|..+..+.+ +.++.+|||+||++|..+...+.+.+ ..|.++|.-...-+. +... .+-....+.|.++
T Consensus 67 L~ei~ek~~----l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~------~s~gwn~v~fk~gv 135 (267)
T 3p8z_A 67 LQWFVERNM----VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPM------STYGWNIVKLMSGK 135 (267)
T ss_dssp HHHHHHTTS----SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCC------CCTTTTSEEEECSC
T ss_pred HHHHHHhcC----CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchh------hhcCcCceEEEecc
Confidence 555555432 45678999999999999998885543 468888765443310 0011 1123467899988
Q ss_pred CCCCCCCCCCccchhhhhh
Q 024811 220 PLQDFTPETGRYDVIWVQW 238 (262)
Q Consensus 220 d~~~~~~~~~~yDlI~s~~ 238 (262)
|+...++ .++|+|+|-.
T Consensus 136 Dv~~~~~--~~~DtllcDI 152 (267)
T 3p8z_A 136 DVFYLPP--EKCDTLLCDI 152 (267)
T ss_dssp CGGGCCC--CCCSEEEECC
T ss_pred ceeecCC--ccccEEEEec
Confidence 8866655 5799999864
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00065 Score=62.95 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=49.4
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~ 225 (262)
+..|||||.|+|.+|..|+... ..+|++||+++.++...++.+. ..++.++.+|+.++.
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~---------~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---------GSPLQILKRDPYDWS 118 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---------TSSCEEECSCTTCHH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhcc---------CCCEEEEECCccchh
Confidence 4789999999999999999432 5689999999999999988762 237899999997763
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00022 Score=80.54 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=49.7
Q ss_pred CCceeeEeeccccHHHHHHHHhc------CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC-CCCCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~------~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~-~~~~~ 229 (262)
+..+|||||+|+|..+..++... +.+++..|+|+.+.+.|++++... .+..-..|.++. .+...
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---------di~~~~~d~~~~~~~~~~ 1310 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---------HVTQGQWDPANPAPGSLG 1310 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---------TEEEECCCSSCCCC----
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---------ccccccccccccccCCCC
Confidence 46799999999999888777432 236899999999999988886421 222211233322 11235
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.||+|+++.++|-..+.+ ..|.+++++|+||
T Consensus 1311 ~ydlvia~~vl~~t~~~~--~~l~~~~~lL~p~ 1341 (2512)
T 2vz8_A 1311 KADLLVCNCALATLGDPA--VAVGNMAATLKEG 1341 (2512)
T ss_dssp -CCEEEEECC----------------------C
T ss_pred ceeEEEEcccccccccHH--HHHHHHHHhcCCC
Confidence 799999999997666666 8999999999997
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0046 Score=54.11 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=41.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~ 202 (262)
++..|||..||+|..+.... ..+.++.++|.++.+++.|++++..
T Consensus 212 ~~~~vlD~f~GsGtt~~~a~-~~gr~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 212 PNDLVLDCFMGSGTTAIVAK-KLGRNFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp TTCEEEESSCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHHh
Confidence 57899999999999999888 7788999999999999999999853
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0083 Score=58.21 Aligned_cols=107 Identities=14% Similarity=0.019 Sum_probs=70.8
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc--------------CCcEEEEeCCHHHHHHHHhhcccccc
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--------------FNEVDLLEPVSHFLDAARESLAPENH 205 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~--------------~~~V~~VD~s~~mld~Ar~~l~~a~~ 205 (262)
.++..++. ..++.+|+|-.||+|.+........ -..+.++|.++.+...|+-++...
T Consensus 207 ~lmv~l~~-------p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lh-- 277 (530)
T 3ufb_A 207 RFMVEVMD-------PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLH-- 277 (530)
T ss_dssp HHHHHHHC-------CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHH--
T ss_pred HHHHHhhc-------cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhc--
Confidence 45555554 2346799999999999987665221 135899999999999999876432
Q ss_pred cCCCCCcceEEEEcCCCCCCC----CCCccchhhhhhHHhhcC---------------chhHHHHHHHHHhhcc
Q 024811 206 MAPDMHKATNFFCVPLQDFTP----ETGRYDVIWVQWCIGHLT---------------DDDFVSFFKRAKVNHS 260 (262)
Q Consensus 206 ~~~~~~~~v~f~~~d~~~~~~----~~~~yDlI~s~~vl~hlt---------------D~el~~~l~~~~~~Lk 260 (262)
.....++.++|....+. ...+||+|++|.++.--. +.+ ..|+..+...|+
T Consensus 278 ----g~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~-~~Fl~~~l~~Lk 346 (530)
T 3ufb_A 278 ----GLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETA-MLFLQLIMRKLK 346 (530)
T ss_dssp ----TCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHH-HHHHHHHHHHBC
T ss_pred ----CCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhH-HHHHHHHHHHhh
Confidence 12234667777665432 125799999998764211 111 247788888886
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0055 Score=56.78 Aligned_cols=107 Identities=11% Similarity=0.011 Sum_probs=72.6
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCcc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY 231 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~y 231 (262)
..++.+|||+.||+|.=|..|+ .... .|+++|.|+.-+...++++............++.+...|...+.. ..+.|
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la-~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALL-QTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHH-HTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCCEEEEecCCccHHHHHHH-HhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence 4468899999999999999999 5544 689999999999999988864322111122467788888776532 23589
Q ss_pred chhhh----hhH-Hh----------hcCchh------H-HHHHHHHHhhccCC
Q 024811 232 DVIWV----QWC-IG----------HLTDDD------F-VSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s----~~v-l~----------hltD~e------l-~~~l~~~~~~LkPG 262 (262)
|.|++ +.. +. ..+..+ + .++|.++.++||||
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpG 277 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPG 277 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEE
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99985 221 11 111111 1 25788888899886
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0063 Score=54.59 Aligned_cols=98 Identities=9% Similarity=-0.035 Sum_probs=65.4
Q ss_pred CCceeeEeeccccHHHHHHHHhc------CCcEEEEeCCHH--------------------------HHHHHHhhccccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSH--------------------------FLDAARESLAPEN 204 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~------~~~V~~VD~s~~--------------------------mld~Ar~~l~~a~ 204 (262)
.+++|||||+.+|..+..++.-. ..+|.++|..+. .++.+++++..+.
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 36799999999999998876321 356888886421 4677888876542
Q ss_pred ccCCCCCcceEEEEcCCCCCCCC--CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 205 HMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 205 ~~~~~~~~~v~f~~~d~~~~~~~--~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
- ...+++++.+++.+.-+. .++||+|..-.-. | .....+|..+...|+||
T Consensus 186 l----~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~-y---~~~~~~Le~~~p~L~pG 237 (282)
T 2wk1_A 186 L----LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL-Y---ESTWDTLTNLYPKVSVG 237 (282)
T ss_dssp C----CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS-H---HHHHHHHHHHGGGEEEE
T ss_pred C----CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc-c---ccHHHHHHHHHhhcCCC
Confidence 1 125799999988664321 2579988765321 1 11235788888888876
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.011 Score=54.79 Aligned_cols=70 Identities=14% Similarity=0.021 Sum_probs=55.8
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--------CCCc
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------ETGR 230 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--------~~~~ 230 (262)
.++||+-||.|.++..|....+..|.++|.++..++..+.|.. ...++++|+.++.. ....
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~-----------~~~~~~~DI~~~~~~~~~~~~~~~~~ 71 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP-----------RSLHVQEDVSLLNAEIIKGFFKNDMP 71 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT-----------TSEEECCCGGGCCHHHHHHHHCSCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC-----------CCceEecChhhcCHHHHHhhcccCCC
Confidence 4799999999999999996666677899999999999998863 34677888887743 1247
Q ss_pred cchhhhhhH
Q 024811 231 YDVIWVQWC 239 (262)
Q Consensus 231 yDlI~s~~v 239 (262)
+|+|+....
T Consensus 72 ~D~i~ggpP 80 (376)
T 3g7u_A 72 IDGIIGGPP 80 (376)
T ss_dssp CCEEEECCC
T ss_pred eeEEEecCC
Confidence 999996553
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0044 Score=56.72 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=55.3
Q ss_pred ceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC---Cccch
Q 024811 159 LVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRYDV 233 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~---~~yDl 233 (262)
.+|||+-||+|.++..+.... +..|.++|.++.+++..+.|.. ...++++|+.++.+.. ..+|+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----------~~~~~~~Di~~~~~~~~~~~~~D~ 71 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----------HTQLLAKTIEGITLEEFDRLSFDM 71 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------TSCEECSCGGGCCHHHHHHHCCSE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----------ccccccCCHHHccHhHcCcCCcCE
Confidence 579999999999999999544 3578999999999999999874 2347788888875321 15899
Q ss_pred hhhhhH
Q 024811 234 IWVQWC 239 (262)
Q Consensus 234 I~s~~v 239 (262)
|+....
T Consensus 72 l~~gpP 77 (343)
T 1g55_A 72 ILMSPP 77 (343)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 998764
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.027 Score=51.45 Aligned_cols=102 Identities=10% Similarity=0.101 Sum_probs=71.4
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCC-HHHHHHHHhhccccccc----C-----C------CCCcceEEEEcCC
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPENHM----A-----P------DMHKATNFFCVPL 221 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s-~~mld~Ar~~l~~a~~~----~-----~------~~~~~v~f~~~d~ 221 (262)
...|+.+|||.....-.|... ++.+..+|.+ |+.++.-++.+...... . . ....+..++.+|+
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~-~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQM-FPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHH-CTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CcEEEEeCCCCccHHHHhcCc-CCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 568999999999999999943 4456666555 77777766665432100 0 0 0014678899999
Q ss_pred CCCC---------CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhcc
Q 024811 222 QDFT---------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHS 260 (262)
Q Consensus 222 ~~~~---------~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~Lk 260 (262)
.+.. +......++++-.+++||+.++..++|+.+.....
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~~ 224 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS 224 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhCC
Confidence 8731 12245678888889999999998899999988664
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.026 Score=52.00 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=59.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC---C---
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---E--- 227 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~---~--- 227 (262)
.+++.++|+.||.|..|..|+...+ .+|.++|.++.+++.|+ ++. ..++.++.+++.++.. .
T Consensus 56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~---------~~Rv~lv~~nF~~l~~~L~~~g~ 125 (347)
T 3tka_A 56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID---------DPRFSIIHGPFSALGEYVAERDL 125 (347)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC---------CTTEEEEESCGGGHHHHHHHTTC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc---------CCcEEEEeCCHHHHHHHHHhcCC
Confidence 4678999999999999999995443 37999999999999995 552 2367888888776521 0
Q ss_pred CCccchhhhhh--HHhhcCchh
Q 024811 228 TGRYDVIWVQW--CIGHLTDDD 247 (262)
Q Consensus 228 ~~~yDlI~s~~--vl~hltD~e 247 (262)
.+++|.|+... +-+++.+++
T Consensus 126 ~~~vDgILfDLGVSS~QlD~~e 147 (347)
T 3tka_A 126 IGKIDGILLDLGVSSPQLDDAE 147 (347)
T ss_dssp TTCEEEEEEECSCCHHHHHCGG
T ss_pred CCcccEEEECCccCHHHhcCCC
Confidence 12577777653 345666554
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.024 Score=53.02 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=40.0
Q ss_pred CCCceeeEeeccccHHHHHHHH-hcC--CcEEEEeCCHHHHHHHHhhccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLI-RYF--NEVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~-~~~--~~V~~VD~s~~mld~Ar~~l~~ 202 (262)
.++..++||||++|..+..++. ... .+|.++||+|...+..++++..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4678999999999999999883 332 5899999999999999998754
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=94.36 E-value=0.025 Score=51.44 Aligned_cols=68 Identities=13% Similarity=0.000 Sum_probs=51.9
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC-Cccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~-~~yDlI~s 236 (262)
..++||+-||+|.++..+....+..|.++|.++..++..+.+.... . ++|+.++.+.. ..+|+|+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~----------~---~~Di~~~~~~~~~~~D~l~~ 77 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK----------P---EGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC----------C---BSCGGGSCGGGSCCCSEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC----------C---cCCHHHcCHhhCCCCCEEEE
Confidence 4689999999999999999555677889999999999999987431 1 46666654321 35888887
Q ss_pred hh
Q 024811 237 QW 238 (262)
Q Consensus 237 ~~ 238 (262)
..
T Consensus 78 gp 79 (327)
T 2c7p_A 78 GF 79 (327)
T ss_dssp EC
T ss_pred CC
Confidence 64
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.016 Score=52.15 Aligned_cols=76 Identities=13% Similarity=-0.027 Sum_probs=61.1
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC----CCCCCccch
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~----~~~~~~yDl 233 (262)
+..+||+=+|+|.++..++ +.+.++.+||.++..++..++++.. ..++.++..|.... .++..+||+
T Consensus 92 ~~~~LDlfaGSGaLgiEaL-S~~d~~vfvE~~~~a~~~L~~Nl~~--------~~~~~V~~~D~~~~L~~l~~~~~~fdL 162 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQL-RSQDRLYLCELHPTEYNFLLKLPHF--------NKKVYVNHTDGVSKLNALLPPPEKRGL 162 (283)
T ss_dssp SSSSCCEEECHHHHHHHHS-CTTSEEEEECCSHHHHHHHTTSCCT--------TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred CCCceeEeCCcHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHhCc--------CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence 4579999999999999999 5678999999999999999999853 24688888885442 233357999
Q ss_pred hhhhhHHhh
Q 024811 234 IWVQWCIGH 242 (262)
Q Consensus 234 I~s~~vl~h 242 (262)
|++-.+...
T Consensus 163 VfiDPPYe~ 171 (283)
T 2oo3_A 163 IFIDPSYER 171 (283)
T ss_dssp EEECCCCCS
T ss_pred EEECCCCCC
Confidence 998877553
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.2 Score=45.21 Aligned_cols=99 Identities=10% Similarity=-0.055 Sum_probs=68.3
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC---------CCC
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---------ETG 229 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~---------~~~ 229 (262)
..|+++|||.=.....|.......|.=|| -|..++..++.+..... ....+..++.+|+.+ .. ...
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~---~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGV---TPTADRREVPIDLRQ-DWPPALRSAGFDPS 178 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTC---CCSSEEEEEECCTTS-CHHHHHHHTTCCTT
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCC---CCCCCeEEEecchHh-hHHHHHHhccCCCC
Confidence 46999999998877666521123566667 48889888888853211 113467888999976 21 112
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.-=++++-.+++|+++++...+|+.+...+.||
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~g 211 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVG 211 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTT
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCC
Confidence 233455667899999998889999999988776
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.53 E-value=0.25 Score=44.46 Aligned_cols=46 Identities=11% Similarity=-0.036 Sum_probs=41.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a 203 (262)
++..|||.=||+|..+.... +.+.+..++|+++.+++.+++++..+
T Consensus 252 ~~~~VlDpF~GsGtt~~aa~-~~gr~~ig~e~~~~~~~~~~~r~~~~ 297 (323)
T 1boo_A 252 PDDLVVDIFGGSNTTGLVAE-RESRKWISFEMKPEYVAASAFRFLDN 297 (323)
T ss_dssp TTCEEEETTCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred CCCEEEECCCCCCHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHhc
Confidence 57899999999999888777 77889999999999999999998643
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=90.98 E-value=0.12 Score=47.04 Aligned_cols=70 Identities=9% Similarity=0.035 Sum_probs=53.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcE-EEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC---Cc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEV-DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GR 230 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V-~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~---~~ 230 (262)
...+++|+-||.|.++.-|....+ ..| .++|.++..++.-+.|... .+++.|+.++.+.. ..
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~------------~~~~~DI~~~~~~~i~~~~ 76 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE------------EVQVKNLDSISIKQIESLN 76 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC------------CCBCCCTTTCCHHHHHHTC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC------------CcccCChhhcCHHHhccCC
Confidence 356899999999999999984332 556 7999999999999998742 15678888875421 25
Q ss_pred cchhhhhh
Q 024811 231 YDVIWVQW 238 (262)
Q Consensus 231 yDlI~s~~ 238 (262)
+|+|+...
T Consensus 77 ~Dil~ggp 84 (327)
T 3qv2_A 77 CNTWFMSP 84 (327)
T ss_dssp CCEEEECC
T ss_pred CCEEEecC
Confidence 89998654
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=89.20 E-value=0.57 Score=42.25 Aligned_cols=46 Identities=11% Similarity=0.067 Sum_probs=39.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCH---HHHHHHHhhcccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS---HFLDAARESLAPE 203 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~---~mld~Ar~~l~~a 203 (262)
++..|||.=||+|..+.... ..+.+..++|+++ .+++.+++++..+
T Consensus 242 ~~~~vlDpF~GsGtt~~aa~-~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 242 PGSTVLDFFAGSGVTARVAI-QEGRNSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp TTCEEEETTCTTCHHHHHHH-HHTCEEEEEESSTHHHHHHHHHHHHC---
T ss_pred CCCEEEecCCCCCHHHHHHH-HcCCcEEEEECCccHHHHHHHHHHHHHHc
Confidence 57899999999999888887 7788899999999 9999999998643
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=88.88 E-value=0.14 Score=46.68 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=52.9
Q ss_pred CceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC---Cccc
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRYD 232 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~---~~yD 232 (262)
..+++|+=||.|.++.-|....+ ..|.++|.++..++.-+.|.. ...+++.|+.++.+.. ..+|
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----------~~~~~~~DI~~~~~~~~~~~~~D 71 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----------ETNLLNRNIQQLTPQVIKKWNVD 71 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------TSCEECCCGGGCCHHHHHHTTCC
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----------CCceeccccccCCHHHhccCCCC
Confidence 35899999999999999984433 557899999999999999864 2346678887775421 2589
Q ss_pred hhhhhh
Q 024811 233 VIWVQW 238 (262)
Q Consensus 233 lI~s~~ 238 (262)
+|+..+
T Consensus 72 ~l~ggp 77 (333)
T 4h0n_A 72 TILMSP 77 (333)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 888654
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=88.25 E-value=0.65 Score=43.31 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=36.3
Q ss_pred CCceeeEeeccccHHHHHHHHhc--C------CcEEEEeCCHHHHHHHHhhcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--F------NEVDLLEPVSHFLDAARESLA 201 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~------~~V~~VD~s~~mld~Ar~~l~ 201 (262)
.+..|+|+|+|.|.++..++... . .++.+||+|+...+.-++++.
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 132 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 132 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence 45689999999999999988321 1 268999999999998887764
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.96 E-value=0.31 Score=43.67 Aligned_cols=71 Identities=11% Similarity=0.001 Sum_probs=53.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC----Cc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET----GR 230 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~--V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~----~~ 230 (262)
...+++|+=||.|.++..|....+.. |.++|.++..++.-+.+.. ...++..|+.++.... +.
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----------~~~~~~~DI~~i~~~~i~~~~~ 83 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----------GKIMYVGDVRSVTQKHIQEWGP 83 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----------TCEEEECCGGGCCHHHHHHTCC
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----------CCceeCCChHHccHHHhcccCC
Confidence 46799999999999999998444444 5889999999998888753 2357788888875321 36
Q ss_pred cchhhhhh
Q 024811 231 YDVIWVQW 238 (262)
Q Consensus 231 yDlI~s~~ 238 (262)
+|+|+...
T Consensus 84 ~Dll~ggp 91 (295)
T 2qrv_A 84 FDLVIGGS 91 (295)
T ss_dssp CSEEEECC
T ss_pred cCEEEecC
Confidence 89998654
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=87.39 E-value=0.33 Score=44.12 Aligned_cols=85 Identities=11% Similarity=0.123 Sum_probs=52.8
Q ss_pred CCCceeeEeec------cccHHHHHHHHhcCC---cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC
Q 024811 156 NQHLVALDCGS------GIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (262)
Q Consensus 156 ~~~~~VLDlGc------GtG~lt~~La~~~~~---~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~ 226 (262)
+.+.+|||+|| -+|.. ++++..+ .|..+|+.+-- .... .++++|..+...
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~---VLr~~~p~g~~VVavDL~~~~-----------------sda~-~~IqGD~~~~~~ 166 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA---VLRQWLPTGTLLVDSDLNDFV-----------------SDAD-STLIGDCATVHT 166 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH---HHHHHSCTTCEEEEEESSCCB-----------------CSSS-EEEESCGGGEEE
T ss_pred cCCCEEEeCCCCCCCCCCCcHH---HHHHhCCCCcEEEEeeCcccc-----------------cCCC-eEEEcccccccc
Confidence 45789999996 77873 3323333 57777764321 0112 558999876654
Q ss_pred CCCccchhhhhh---HHhhcCchh-----HH-HHHHHHHhhccCC
Q 024811 227 ETGRYDVIWVQW---CIGHLTDDD-----FV-SFFKRAKVNHSQT 262 (262)
Q Consensus 227 ~~~~yDlI~s~~---vl~hltD~e-----l~-~~l~~~~~~LkPG 262 (262)
. ++||+|+|-. ...+..-+. +. .++.-+.+.|+||
T Consensus 167 ~-~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpG 210 (344)
T 3r24_A 167 A-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG 210 (344)
T ss_dssp S-SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEE
T ss_pred C-CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCC
Confidence 3 6899999854 234432222 33 4777788889886
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=86.06 E-value=0.55 Score=41.69 Aligned_cols=67 Identities=10% Similarity=0.006 Sum_probs=52.8
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC-Cccchhhhhh
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIWVQW 238 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~-~~yDlI~s~~ 238 (262)
+|||+=||.|.++.-|-...+.-|-++|.++.+++.-+.+.. ..++++|+.++.... ...|+|+...
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~------------~~~~~~DI~~i~~~~~~~~D~l~ggp 69 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------------AKLIKGDISKISSDEFPKCDGIIGGP 69 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC------------SEEEESCGGGCCGGGSCCCSEEECCC
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------------CCcccCChhhCCHhhCCcccEEEecC
Confidence 699999999999999985456667899999999999888853 256788888875432 4689988654
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=85.20 E-value=1.1 Score=40.81 Aligned_cols=44 Identities=14% Similarity=-0.056 Sum_probs=38.0
Q ss_pred CCCCceeeEeeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHh
Q 024811 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (262)
Q Consensus 155 ~~~~~~VLDlGcGt-G~lt~~La~~~~~-~V~~VD~s~~mld~Ar~ 198 (262)
..++.+||-+|||. |.++..+++..+. +|.++|.|++.++.+++
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~ 228 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD 228 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 45688999999987 9999999966676 89999999999998876
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=84.69 E-value=0.65 Score=43.96 Aligned_cols=44 Identities=20% Similarity=0.438 Sum_probs=36.4
Q ss_pred CceeeEeeccccHHHHHHHHhc------CCcEEEEeCCHHHHHHHHhhcc
Q 024811 158 HLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLA 201 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~------~~~V~~VD~s~~mld~Ar~~l~ 201 (262)
...|+|+|+|.|.++..++... ..++.+||+|+...+.-++++.
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 187 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG 187 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence 4689999999999999998322 1369999999999998888775
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=83.36 E-value=6.1 Score=29.38 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=26.5
Q ss_pred ceeeEeeccccHHHHHHHH---hcCCcEEEEeCCHHHHHHHHh
Q 024811 159 LVALDCGSGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~---~~~~~V~~VD~s~~mld~Ar~ 198 (262)
.+|+=+|+ |.++..++. +.+.+|.++|.++..++..++
T Consensus 5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~ 45 (140)
T 1lss_A 5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA 45 (140)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 46777876 555555542 346789999999987776654
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.08 E-value=2.2 Score=38.38 Aligned_cols=45 Identities=13% Similarity=-0.001 Sum_probs=37.9
Q ss_pred CCCCceeeEeeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhh
Q 024811 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (262)
Q Consensus 155 ~~~~~~VLDlGcGt-G~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~ 199 (262)
..++.+||-+|||. |.++..+++..+. .|.++|.+++-++.+++.
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l 234 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL 234 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence 45678999999986 8899999966666 699999999999998764
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=80.74 E-value=2.9 Score=37.06 Aligned_cols=45 Identities=16% Similarity=0.043 Sum_probs=39.0
Q ss_pred CCCCceeeEeeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHhh
Q 024811 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 155 ~~~~~~VLDlGcGt-G~lt~~La~~~~~~V~~VD~s~~mld~Ar~~ 199 (262)
..++.+||=.|||. |.++..+++..+.+|.++|.+++-++.+++.
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l 209 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRL 209 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc
Confidence 45678999999875 9999999977788999999999999998774
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 262 | ||||
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 2e-34 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 5e-18 | |
| d1mjfa_ | 276 | c.66.1.17 (A:) Putative spermidine synthetase PF01 | 0.002 |
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 122 bits (307), Expect = 2e-34
Identities = 71/195 (36%), Positives = 102/195 (52%), Gaps = 18/195 (9%)
Query: 62 KHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVD 121
K S + +SG D++GK +++ +EMW+ ++ D + + WY + + YW V A+V
Sbjct: 8 KEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVS 65
Query: 122 GVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181
GVLGG +V++VDI+GS F+ L ALDCG+GIGRITKNLL + +
Sbjct: 66 GVLGGMDHVHDVDIEGSRNFIASLPGHGTSR--------ALDCGAGIGRITKNLLTKLYA 117
Query: 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241
DLLEPV H L+ E F ++ T YD+I +QW
Sbjct: 118 TTDLLEPVKHMLE--------EAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169
Query: 242 HLTDDDFVSFFKRAK 256
+LTD DFV FFK +
Sbjct: 170 YLTDADFVKFFKHCQ 184
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.3 bits (191), Expect = 5e-18
Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L +
Sbjct: 6 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGT---S 62
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E +
Sbjct: 63 CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT 122
Query: 220 PLQDFTPETGRYDVIWVQWC 239
P D VI
Sbjct: 123 PEPDSYDVIWIQWVIGHLTD 142
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 36.7 bits (84), Expect = 0.002
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 9/120 (7%)
Query: 151 PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM 210
+ + L G G G + +L +EV ++E + +++ + +N + M
Sbjct: 66 AMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAM 125
Query: 211 HKA----TNFFCVPLQDFTPETGRYDVIWVQ-----WCIGHLTDDDFVSFFKRAKVNHSQ 261
+F +DVI L ++F + A N
Sbjct: 126 LNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGI 185
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 262 | |||
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 100.0 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.95 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.83 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.82 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.81 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.8 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.8 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.78 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.77 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.75 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.75 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.74 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.72 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.7 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.69 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.68 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.67 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.67 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.66 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.65 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.61 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.59 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.55 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.54 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.53 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.53 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.51 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.47 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.46 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.43 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.42 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.39 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.38 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.37 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.37 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.33 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.33 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.31 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.3 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.29 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.26 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.24 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.19 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.19 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.17 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.15 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.14 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.12 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.11 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.11 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.09 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.07 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.07 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.0 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.96 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.92 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.9 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.87 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.86 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.85 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.76 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.76 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.75 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.74 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.73 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.67 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.63 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.57 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.54 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.5 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.48 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.48 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.44 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.41 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.39 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.35 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.27 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.26 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.16 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.15 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.12 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.07 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.04 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.03 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.03 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.02 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.0 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.97 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.88 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.34 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.26 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.21 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.19 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.99 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.58 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.44 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.22 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 95.89 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.83 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.72 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 95.42 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 94.04 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.74 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 92.63 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.5 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.85 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 91.27 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.22 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.48 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 89.69 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 89.56 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 88.85 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 87.8 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 85.4 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 85.38 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 85.19 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 84.97 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 81.69 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 81.6 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 81.47 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 80.84 |
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=5.2e-38 Score=277.88 Aligned_cols=181 Identities=40% Similarity=0.748 Sum_probs=161.2
Q ss_pred CCCCceeecccCCCCCccCCHHHHHHHHhccccchhhhhhHhHhhHHhhhhccchhhccccCCCCCCcccchhhHHHHHH
Q 024811 64 KESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQ 143 (262)
Q Consensus 64 ~~~~~~~~~g~d~~g~ef~s~~e~W~~~~~~~~~~~~~~~~wy~~~~~yW~~~~~~~dgvlgGy~~is~~di~~s~~fL~ 143 (262)
.++.++.+.|.|++|++|.+..++|++++..+.. ....+||..+.+||+.+++++++|+|||.+++..|+..++.||.
T Consensus 10 ~~~~~~~~~g~d~~g~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~~yW~~~~~t~~~mlgg~~~~~~~d~~~s~~fl~ 87 (254)
T d1xtpa_ 10 ASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIA 87 (254)
T ss_dssp ---CCCCCCEEETTSCEESCHHHHHHHHSCSCTT--CTTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCEeccHHHHHHHHhccccc--ccchhhhhchhhhhhcCchhcccccCCccccchhhHHHHHHHHh
Confidence 4578889999999999999999999999986433 45667999999999999999999999999999999999999998
Q ss_pred HHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC
Q 024811 144 MLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (262)
Q Consensus 144 ~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~ 223 (262)
.+.. ....+|||||||+|++|..|+.+.+.+|++||+|+.|++.|++++.. .++++|+++|+++
T Consensus 88 ~l~~--------~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~--------~~~~~~~~~d~~~ 151 (254)
T d1xtpa_ 88 SLPG--------HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMET 151 (254)
T ss_dssp TSTT--------CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCGGG
T ss_pred hCCC--------CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc--------cccceeEEccccc
Confidence 7643 24679999999999999999977788999999999999999998743 3478999999999
Q ss_pred CCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 224 ~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++++++||+|||+++++|++|+++.++|++|+++|+||
T Consensus 152 ~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg 190 (254)
T d1xtpa_ 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN 190 (254)
T ss_dssp CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred cccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCC
Confidence 988778999999999999999999999999999999986
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.2e-28 Score=211.59 Aligned_cols=152 Identities=44% Similarity=0.869 Sum_probs=132.2
Q ss_pred hhHhHhhHHhhhhccchhhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCC
Q 024811 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (262)
Q Consensus 102 ~~~wy~~~~~yW~~~~~~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~ 181 (262)
...||.++.+||++++++.++|+|||..++..|+..++.|+...+.... ...+..+|||+|||+|+++..|+.+.+.
T Consensus 8 ~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 84 (222)
T d2ex4a1 8 EKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGP---NKTGTSCALDCGAGIGRITKRLLLPLFR 84 (222)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHHhCCCccccccccCccccchhhHHHHHHHHHHHHHhcc---CCCCCCEEEEeccCCCHhhHHHHHhcCC
Confidence 4579999999999999999999999999999999998999988765322 2335679999999999999998856677
Q ss_pred cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 182 ~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
+|++||+|+.||+.|++++... ...+++|+++|++++.++.++||+|+|..++||++++++.++|++++++|+|
T Consensus 85 ~v~~vD~s~~~l~~ak~~~~~~------~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~ 158 (222)
T d2ex4a1 85 EVDMVDITEDFLVQAKTYLGEE------GKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRP 158 (222)
T ss_dssp EEEEEESCHHHHHHHHHHTGGG------GGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred EEEEeecCHHHhhccccccccc------cccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcCC
Confidence 8999999999999999987643 2347899999999998777899999999999999999988999999999998
Q ss_pred C
Q 024811 262 T 262 (262)
Q Consensus 262 G 262 (262)
|
T Consensus 159 ~ 159 (222)
T d2ex4a1 159 N 159 (222)
T ss_dssp E
T ss_pred c
Confidence 6
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=5.4e-21 Score=161.00 Aligned_cols=121 Identities=18% Similarity=0.205 Sum_probs=99.5
Q ss_pred CCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCC
Q 024811 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP 208 (262)
Q Consensus 129 ~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~ 208 (262)
..+..........+..++.+.+ ++..+|||||||+|.++..|+ +.+.+|+++|+|+.|++.|++++...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l-----~~~~~ILDiGcG~G~~~~~la-~~~~~v~giD~S~~~i~~ak~~~~~~----- 82 (226)
T d1ve3a1 14 DINSQEYRSRIETLEPLLMKYM-----KKRGKVLDLACGVGGFSFLLE-DYGFEVVGVDISEDMIRKAREYAKSR----- 82 (226)
T ss_dssp CTTSHHHHHHHHHHHHHHHHSC-----CSCCEEEEETCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHT-----
T ss_pred HhhHHHHHHHHHHHHHHHHHhc-----CCCCEEEEECCCcchhhhhHh-hhhcccccccccccchhhhhhhhccc-----
Confidence 3444444444555666665443 357899999999999999999 66789999999999999999987542
Q ss_pred CCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 209 DMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 209 ~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
...+.++++|+.+++...++||+|+|..+++|+++.++.++|+++.++||||
T Consensus 83 --~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg 134 (226)
T d1ve3a1 83 --ESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPS 134 (226)
T ss_dssp --TCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEE
T ss_pred --cccccccccccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcC
Confidence 2357889999999877778999999999999999888889999999999996
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.82 E-value=4.9e-21 Score=164.42 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=89.6
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++++.+|||+|||+|.++..|+ +.+.+|++||+|+.|++.|++++... ...++.|+++|++++++++++||+|
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la-~~~~~v~gvD~S~~~l~~A~~~~~~~------~~~~~~~~~~d~~~~~~~~~~fD~v 86 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFS-PYVQECIGVDATKEMVEVASSFAQEK------GVENVRFQQGTAESLPFPDDSFDII 86 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHG-GGSSEEEEEESCHHHHHHHHHHHHHH------TCCSEEEEECBTTBCCSCTTCEEEE
T ss_pred CCCCCEEEEeCCcCcHHHHHHH-HhCCeEEEEeCChhhhhhhhhhhccc------cccccccccccccccccccccccee
Confidence 5678999999999999999999 66789999999999999999987543 2357999999999998777899999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|..+++|++|++ .+|+++.++|+||
T Consensus 87 ~~~~~l~~~~d~~--~~l~~~~r~Lkpg 112 (234)
T d1xxla_ 87 TCRYAAHHFSDVR--KAVREVARVLKQD 112 (234)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEEE
T ss_pred eeeceeecccCHH--HHHHHHHHeeCCC
Confidence 9999999999988 9999999999996
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.81 E-value=1.3e-20 Score=160.12 Aligned_cols=99 Identities=14% Similarity=0.223 Sum_probs=88.6
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++++.+|||||||+|.++..|+ +.+.+|+++|+|+.|++.|++++... ...++.|+++|++++++++++||+|
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~i~~A~~~~~~~------~~~~i~~~~~d~~~l~~~~~~fD~v 85 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFA-PFVKKVVAFDLTEDILKVARAFIEGN------GHQQVEYVQGDAEQMPFTDERFHIV 85 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHG-GGSSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCC-CCCSCTTCEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHH-HhCCEEEEEECCHHHHhhhhhccccc------ccccccccccccccccccccccccc
Confidence 5568899999999999999999 67889999999999999999987543 3457999999999998667899999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|..++||++|++ .+|+++.++|+||
T Consensus 86 ~~~~~l~~~~d~~--~~l~~~~r~Lkpg 111 (231)
T d1vl5a_ 86 TCRIAAHHFPNPA--SFVSEAYRVLKKG 111 (231)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEEE
T ss_pred cccccccccCCHH--HHHHHHHHhcCCC
Confidence 9999999999988 9999999999997
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=3.4e-20 Score=159.42 Aligned_cols=112 Identities=16% Similarity=0.176 Sum_probs=92.8
Q ss_pred HHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEE
Q 024811 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (262)
Q Consensus 138 s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~ 217 (262)
...++..++.... ..+..+|||+|||||+++..|+ +.+.+|++||+|+.|++.|++++... ..++.|+
T Consensus 26 ~~~~~~~~~~~~~----~~~~~~iLDiGcGtG~~~~~l~-~~~~~v~gvD~s~~mi~~a~~~~~~~-------~~~i~~~ 93 (251)
T d1wzna1 26 EIDFVEEIFKEDA----KREVRRVLDLACGTGIPTLELA-ERGYEVVGLDLHEEMLRVARRKAKER-------NLKIEFL 93 (251)
T ss_dssp HHHHHHHHHHHTC----SSCCCEEEEETCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHT-------TCCCEEE
T ss_pred HHHHHHHHHHHhc----CCCCCEEEEeCCCCCccchhhc-ccceEEEEEeeccccccccccccccc-------cccchhe
Confidence 3446666665331 3346689999999999999999 66779999999999999999987542 2368999
Q ss_pred EcCCCCCCCCCCccchhhhh-hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 218 CVPLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 218 ~~d~~~~~~~~~~yDlI~s~-~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++|+++++++ ++||+|+|. .+++|++.++..++|+++.++|+||
T Consensus 94 ~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg 138 (251)
T d1wzna1 94 QGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG 138 (251)
T ss_dssp ESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred ehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCC
Confidence 9999999876 699999987 4789998888889999999999996
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=4.7e-20 Score=157.02 Aligned_cols=91 Identities=21% Similarity=0.266 Sum_probs=80.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|+++..|+ +.+.+|++||+|+.|++.|+++.. ..++.+|+++++.++++||+|+|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~-~~~~~v~giD~s~~~l~~a~~~~~------------~~~~~~~~~~l~~~~~~fD~ii~ 108 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQ-ERGFEVVLVDPSKEMLEVAREKGV------------KNVVEAKAEDLPFPSGAFEAVLA 108 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHH-TTTCEEEEEESCHHHHHHHHHHTC------------SCEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCEEEEECCCCchhccccc-ccceEEEEeecccccccccccccc------------cccccccccccccccccccceee
Confidence 56799999999999999999 678899999999999999999742 24678999998776789999998
Q ss_pred h-hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 Q-WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~-~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
. .++||++|++ ++|+++.++||||
T Consensus 109 ~~~~~~~~~d~~--~~l~~i~r~Lk~g 133 (246)
T d2avna1 109 LGDVLSYVENKD--KAFSEIRRVLVPD 133 (246)
T ss_dssp CSSHHHHCSCHH--HHHHHHHHHEEEE
T ss_pred ecchhhhhhhHH--HHHHHHHhhcCcC
Confidence 5 5899999998 8999999999997
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.78 E-value=9.6e-20 Score=157.16 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=93.0
Q ss_pred chhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcc
Q 024811 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (262)
Q Consensus 134 di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~ 213 (262)
++.....|+..++.+. ..++.+|||+|||+|+++..|+ +.+.+|++||+|+.|++.|++++... ..+
T Consensus 19 ~y~~~~~~~~~~~~~~-----~~~~~~vLDiGCG~G~~~~~l~-~~g~~v~GvD~S~~ml~~A~~~~~~~-------~~~ 85 (246)
T d1y8ca_ 19 DYKKWSDFIIEKCVEN-----NLVFDDYLDLACGTGNLTENLC-PKFKNTWAVDLSQEMLSEAENKFRSQ-------GLK 85 (246)
T ss_dssp CHHHHHHHHHHHHHTT-----TCCTTEEEEETCTTSTTHHHHG-GGSSEEEEECSCHHHHHHHHHHHHHT-------TCC
T ss_pred CHHHHHHHHHHHHHHh-----CCCCCeEEEEeCcCCHHHHHHH-HhCCccEeeccchhhhhhcccccccc-------Ccc
Confidence 3444456776666532 1245789999999999999999 66789999999999999999987542 336
Q ss_pred eEEEEcCCCCCCCCCCccchhhhh-hHHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 214 TNFFCVPLQDFTPETGRYDVIWVQ-WCIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 214 v~f~~~d~~~~~~~~~~yDlI~s~-~vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
++|+++|+.++.++ ++||+|+|. .+++|+.+ +++.++|++++++|+||
T Consensus 86 v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 135 (246)
T d1y8ca_ 86 PRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135 (246)
T ss_dssp CEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred ceeeccchhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCC
Confidence 89999999998765 699999986 57889865 46778999999999996
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.77 E-value=4.8e-19 Score=156.19 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=90.0
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
+++++.+|||||||+|.++..|+++.+.+|++||+|+.|++.|+++..... ...+++|+++|++++++++++||+
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~g-----l~~~v~~~~~d~~~l~~~~~sfD~ 138 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAG-----LADNITVKYGSFLEIPCEDNSYDF 138 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHT-----CTTTEEEEECCTTSCSSCTTCEEE
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccc-----ccccccccccccccccccccccch
Confidence 356789999999999999999996557789999999999999999876431 234799999999999877789999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|..+++|++|++ .+|+++.++|+||
T Consensus 139 V~~~~~l~h~~d~~--~~l~~~~~~Lkpg 165 (282)
T d2o57a1 139 IWSQDAFLHSPDKL--KVFQECARVLKPR 165 (282)
T ss_dssp EEEESCGGGCSCHH--HHHHHHHHHEEEE
T ss_pred hhccchhhhccCHH--HHHHHHHHhcCCC
Confidence 99999999999987 9999999999997
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=7.7e-19 Score=151.68 Aligned_cols=100 Identities=12% Similarity=-0.025 Sum_probs=87.6
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
+.++.+|||||||+|.++..|+++...+|++||+|+.|++.|+++..... ...+++|+.+|+.++.+ +++||+|
T Consensus 31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~g-----l~~~v~~~~~d~~~~~~-~~~fD~v 104 (245)
T d1nkva_ 31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELG-----VSERVHFIHNDAAGYVA-NEKCDVA 104 (245)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTT-----CTTTEEEEESCCTTCCC-SSCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhh-----ccccchhhhhHHhhccc-cCceeEE
Confidence 55788999999999999999995556799999999999999999875431 23468999999999855 4799999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|..+++|++|.+ .+|++++++||||
T Consensus 105 ~~~~~~~~~~d~~--~~l~~~~r~LkPG 130 (245)
T d1nkva_ 105 ACVGATWIAGGFA--GAEELLAQSLKPG 130 (245)
T ss_dssp EEESCGGGTSSSH--HHHHHHTTSEEEE
T ss_pred EEEehhhccCCHH--HHHHHHHHHcCcC
Confidence 9999999999988 9999999999997
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.75 E-value=7.4e-19 Score=147.35 Aligned_cols=98 Identities=18% Similarity=0.117 Sum_probs=87.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++++|||||||+|+.+..|+ +.+.+|++||+|+.|++.|+++.... ...++.+...|+.++.++ ++||+|+|
T Consensus 30 ~~grvLDiGcG~G~~~~~la-~~g~~v~gvD~s~~~l~~a~~~~~~~------~~~~~~~~~~d~~~~~~~-~~fD~I~~ 101 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLA-ANGYDVTAWDKNPASMANLERIKAAE------GLDNLQTDLVDLNTLTFD-GEYDFILS 101 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHT------TCTTEEEEECCTTTCCCC-CCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHH-HHhhhhccccCcHHHHHHHHHHhhhc------cccchhhhheeccccccc-ccccEEEE
Confidence 35699999999999999999 67889999999999999999887542 235789999999998775 79999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++||+++++...+|+++.++|+||
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~L~pg 127 (198)
T d2i6ga1 102 TVVMMFLEAQTIPGLIANMQRCTKPG 127 (198)
T ss_dssp ESCGGGSCTTHHHHHHHHHHHTEEEE
T ss_pred eeeeecCCHHHHHHHHHHHHHHcCCC
Confidence 99999999998889999999999986
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.74 E-value=1.1e-18 Score=149.11 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=82.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|++||+|+.|++.|+++.. .+++++.++++++.++ ++||+|+|
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~-~~g~~v~giD~s~~~i~~a~~~~~----------~~~~~~~~~~~~~~~~-~~fD~I~~ 87 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQ-EHFNDITCVEASEEAISHAQGRLK----------DGITYIHSRFEDAQLP-RRYDNIVL 87 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHT-TTCSCEEEEESCHHHHHHHHHHSC----------SCEEEEESCGGGCCCS-SCEEEEEE
T ss_pred CCCcEEEEeCCCcHHHHHHH-HcCCeEEEEeCcHHHhhhhhcccc----------cccccccccccccccc-cccccccc
Confidence 46789999999999999998 677899999999999999998863 2689999999998765 79999999
Q ss_pred hhHHhhcCchhHHHHHHHHH-hhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAK-VNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~-~~LkPG 262 (262)
..+|+|++|+. .+|+++. ++|+||
T Consensus 88 ~~vleh~~d~~--~~l~~i~~~~Lk~g 112 (225)
T d2p7ia1 88 THVLEHIDDPV--ALLKRINDDWLAEG 112 (225)
T ss_dssp ESCGGGCSSHH--HHHHHHHHTTEEEE
T ss_pred cceeEecCCHH--HHHHHHHHHhcCCC
Confidence 99999999988 9999997 789986
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.72 E-value=8.3e-18 Score=143.34 Aligned_cols=99 Identities=9% Similarity=0.152 Sum_probs=84.3
Q ss_pred CCceeeEeeccccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~---~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
++.+|||+|||||.++..|++. ...+|++||+|+.|++.|++++.... ...++.+.++|+.++++ ..+|+
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~-----~~~~~~~~~~d~~~~~~--~~~d~ 111 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-----SEIPVEILCNDIRHVEI--KNASM 111 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC-----CSSCEEEECSCTTTCCC--CSEEE
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc-----ccchhhhccchhhcccc--cccee
Confidence 5779999999999999999943 24489999999999999999876431 23467888899888755 47999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|++++||++.++..++|++++++|+||
T Consensus 112 i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg 140 (225)
T d1im8a_ 112 VILNFTLQFLPPEDRIALLTKIYEGLNPN 140 (225)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHEEEE
T ss_pred eEEeeeccccChhhHHHHHHHHHHhCCCC
Confidence 99999999999888889999999999997
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.70 E-value=3.7e-18 Score=139.85 Aligned_cols=107 Identities=11% Similarity=-0.010 Sum_probs=87.4
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccC------CCCCcceEEEEcCCCCCCCC-
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA------PDMHKATNFFCVPLQDFTPE- 227 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~------~~~~~~v~f~~~d~~~~~~~- 227 (262)
+.++.+|||+|||+|+.+..|+ +.+-+|+++|+|+.|++.|+++........ .......+|+++|+.++.+.
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la-~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLS-GQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHH-HHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCCEEEEecCcCCHHHHHHH-HcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 4468899999999999999999 557799999999999999999875321100 00123568899999887643
Q ss_pred CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 228 ~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
...||+|+++.+++|+++++...+++++.+.||||
T Consensus 97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg 131 (201)
T d1pjza_ 97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 131 (201)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE
T ss_pred ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC
Confidence 25899999999999999988889999999999996
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.69 E-value=2.2e-17 Score=143.29 Aligned_cols=117 Identities=13% Similarity=0.023 Sum_probs=90.0
Q ss_pred hHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 137 ~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
.-.++++..|-+.. ..++.+|||+|||+|..+..++...+.+|++||+|+.|++.|+++....+ ...++.|
T Consensus 8 ~~~N~vK~~lI~~~----~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~-----~~~~v~f 78 (252)
T d1ri5a_ 8 NANNFIKACLIRLY----TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK-----RRFKVFF 78 (252)
T ss_dssp HHHHHHHHHHHHHH----CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSC-----CSSEEEE
T ss_pred HHHHHHHHHHHHHh----CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcC-----CCcceEE
Confidence 34456655442211 23578999999999999999995556789999999999999998865421 2347899
Q ss_pred EEcCCCCCCC-CCCccchhhhhhHHhhcCc--hhHHHHHHHHHhhccCC
Q 024811 217 FCVPLQDFTP-ETGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 217 ~~~d~~~~~~-~~~~yDlI~s~~vl~hltD--~el~~~l~~~~~~LkPG 262 (262)
+++|+....+ ..++||+|+|++++||+.+ .++..+|+++.++|+||
T Consensus 79 ~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~g 127 (252)
T d1ri5a_ 79 RAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 127 (252)
T ss_dssp EESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred EEcchhhhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCC
Confidence 9999965543 2368999999999999843 45678999999999996
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=1.3e-17 Score=139.68 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=76.6
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
..+|||||||+|.++..+. ++++||+|+.|++.|+++ ++.++++|+++++..+++||+|+|+
T Consensus 37 ~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-------------~~~~~~~d~~~l~~~~~~fD~I~~~ 98 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFDFALMV 98 (208)
T ss_dssp SSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred CCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-------------ccccccccccccccccccccccccc
Confidence 5689999999999988775 368999999999999874 5789999999997777899999999
Q ss_pred hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 238 WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.+|+|++|++ ++|+++.++|+||
T Consensus 99 ~~l~h~~d~~--~~l~~~~~~L~pg 121 (208)
T d1vlma_ 99 TTICFVDDPE--RALKEAYRILKKG 121 (208)
T ss_dssp SCGGGSSCHH--HHHHHHHHHEEEE
T ss_pred cccccccccc--cchhhhhhcCCCC
Confidence 9999999987 9999999999996
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.67 E-value=3.6e-17 Score=144.73 Aligned_cols=97 Identities=14% Similarity=0.199 Sum_probs=84.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..|+... ..+|++||+|+.|++.|++++... ..+++|++.|+.+++++ ++||+
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-------~~~~~f~~~d~~~~~~~-~~fD~ 97 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-------PYDSEFLEGDATEIELN-DKYDI 97 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS-------SSEEEEEESCTTTCCCS-SCEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc-------ccccccccccccccccc-CCceE
Confidence 357899999999999999999322 347999999999999999987542 33789999999998765 68999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|++++||++|++ .+|+++.++||||
T Consensus 98 v~~~~~l~~~~d~~--~~l~~~~~~Lkpg 124 (281)
T d2gh1a1 98 AICHAFLLHMTTPE--TMLQKMIHSVKKG 124 (281)
T ss_dssp EEEESCGGGCSSHH--HHHHHHHHTEEEE
T ss_pred EEEehhhhcCCCHH--HHHHHHHHHcCcC
Confidence 99999999999998 9999999999996
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3e-17 Score=140.62 Aligned_cols=106 Identities=11% Similarity=0.069 Sum_probs=87.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccc-----------cCCCCCcceEEEEcCCCCC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-----------MAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~-----------~~~~~~~~v~f~~~d~~~~ 224 (262)
.++.+|||+|||+|+.+..|+ +.+.+|++||+|+.||+.|+++...... .......+++|+++|+.++
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA-~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 122 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFA-DRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL 122 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHH-HTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred CCCCEEEEeCCCCcHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence 357899999999999999999 6677999999999999999987543210 0011234789999999887
Q ss_pred CCC-CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 225 TPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 225 ~~~-~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.+. .+.||+|+...++||++.++...+++++.++|+||
T Consensus 123 ~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg 161 (229)
T d2bzga1 123 PRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK 161 (229)
T ss_dssp GGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred cccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc
Confidence 543 47899999999999999998889999999999996
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=1.9e-16 Score=140.90 Aligned_cols=118 Identities=18% Similarity=0.225 Sum_probs=95.0
Q ss_pred cchhhH-HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCC
Q 024811 133 VDIKGS-EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (262)
Q Consensus 133 ~di~~s-~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~ 211 (262)
.+++.. .+.++.++. .+ ++.++.+|||||||+|.++..+++..+.+|++||+|+.+++.|++++.... ..
T Consensus 31 ~tL~~AQ~~k~~~~~~-~l---~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~-----l~ 101 (280)
T d2fk8a1 31 LTLEEAQYAKVDLNLD-KL---DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASID-----TN 101 (280)
T ss_dssp CCHHHHHHHHHHHHHT-TS---CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSC-----CS
T ss_pred CCHHHHHHHHHHHHHH-Hc---CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhc-----cc
Confidence 344433 444566655 33 466789999999999999999996668899999999999999999986542 23
Q ss_pred cceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 212 KATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 212 ~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+.+...|..++ +++||.|+|..+++|+.++.+..+|+++.++||||
T Consensus 102 ~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg 149 (280)
T d2fk8a1 102 RSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD 149 (280)
T ss_dssp SCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT
T ss_pred cchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC
Confidence 4677777777665 26899999999999999987789999999999997
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=3.8e-16 Score=139.38 Aligned_cols=125 Identities=14% Similarity=0.197 Sum_probs=99.4
Q ss_pred CCCCCcccchhhHHH-HHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccccc
Q 024811 126 GFGNVNEVDIKGSEA-FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN 204 (262)
Q Consensus 126 Gy~~is~~di~~s~~-fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~ 204 (262)
||..-.+.+++.... .+..++. ++ ++.++.+|||||||+|.++..+++..+.+|++|.+|+..++.|+++++.+
T Consensus 34 g~~~~~~~tL~eAQ~~k~~~~~~-~l---~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~- 108 (285)
T d1kpga_ 34 AYFERDDMTLQEAQIAKIDLALG-KL---GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS- 108 (285)
T ss_dssp CCCSSTTCCHHHHHHHHHHHHHT-TT---TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC-
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH-Hc---CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhh-
Confidence 333333445544433 3444444 43 46789999999999999999999888889999999999999999987654
Q ss_pred ccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 205 HMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 205 ~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
....++++..+|+.+++ ++||.|+|.+++.|+.++....+|+++.++|+||
T Consensus 109 ----g~~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg 159 (285)
T d1kpga_ 109 ----ENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD 159 (285)
T ss_dssp ----CCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT
T ss_pred ----hhhhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCC
Confidence 23457899999987663 5899999999999999887779999999999997
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.61 E-value=1.6e-15 Score=135.62 Aligned_cols=119 Identities=15% Similarity=0.190 Sum_probs=93.3
Q ss_pred ccchhhH-HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCC
Q 024811 132 EVDIKGS-EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM 210 (262)
Q Consensus 132 ~~di~~s-~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~ 210 (262)
+.+++.. .+.+..++. ++ ++.++.+|||||||+|.++..++.+.+.+|++|++|++.++.|++++.... .
T Consensus 39 ~~tL~~Aq~~k~~~~~~-~l---~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~-----l 109 (291)
T d1kpia_ 39 DMTLEEAQYAKRKLALD-KL---NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVD-----S 109 (291)
T ss_dssp TCCHHHHHHHHHHHHHH-TT---CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSC-----C
T ss_pred CCCHHHHHHHHHHHHHH-hc---CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhc-----c
Confidence 3445444 333444444 33 467899999999999999999997788899999999999999999876531 2
Q ss_pred CcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCch-------hHHHHHHHHHhhccCC
Q 024811 211 HKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDD-------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 211 ~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~-------el~~~l~~~~~~LkPG 262 (262)
...+.+...|...+ +++||.|||..++.|+.+. ....+|+++.++|+||
T Consensus 110 ~~~v~~~~~d~~~~---~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg 165 (291)
T d1kpia_ 110 PRRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD 165 (291)
T ss_dssp SSCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT
T ss_pred chhhhhhhhccccc---ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC
Confidence 34677777776532 4789999999999999874 3568999999999997
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.59 E-value=8.1e-16 Score=128.68 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=81.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..++ ..+++|+++|.|+.+++.|++++.... ....+++++.+|+.+..+ +++||+|+
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la-~~~~~v~~iD~s~~~i~~a~~n~~~~~----l~~~~i~~~~~d~~~~~~-~~~fD~Ii 124 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALA-DEVKSTTMADINRRAIKLAKENIKLNN----LDNYDIRVVHSDLYENVK-DRKYNKII 124 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHG-GGSSEEEEEESCHHHHHHHHHHHHHTT----CTTSCEEEEECSTTTTCT-TSCEEEEE
T ss_pred CCCCeEEEEeecCChhHHHHH-hhccccceeeeccccchhHHHHHHHhC----CccceEEEEEcchhhhhc-cCCceEEE
Confidence 357899999999999999999 678999999999999999999875421 122468999999987533 47999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+.++|+..+ ....+++++.+.|+||
T Consensus 125 ~~~p~~~~~~-~~~~~l~~~~~~Lkpg 150 (194)
T d1dusa_ 125 TNPPIRAGKE-VLHRIIEEGKELLKDN 150 (194)
T ss_dssp ECCCSTTCHH-HHHHHHHHHHHHEEEE
T ss_pred EcccEEecch-hhhhHHHHHHHhcCcC
Confidence 9988766544 3348999999999986
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.55 E-value=2.9e-15 Score=130.12 Aligned_cols=99 Identities=20% Similarity=0.245 Sum_probs=82.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
....+|||||||+|.++..|++.. ..+++++|. +.+++.+++++.... ...+++++.+|+.+..+ .+||+|
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-----~~~rv~~~~~D~~~~~~--~~~D~v 150 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG-----LSDRVDVVEGDFFEPLP--RKADAI 150 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT-----CTTTEEEEECCTTSCCS--SCEEEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh-----cccchhhccccchhhcc--cchhhe
Confidence 356799999999999999999443 235778897 679999999886531 23579999999976544 479999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++++|||++|++..++|++++++|+||
T Consensus 151 ~~~~vlh~~~d~~~~~~L~~~~~~LkPG 178 (253)
T d1tw3a2 151 ILSFVLLNWPDHDAVRILTRCAEALEPG 178 (253)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred eeccccccCCchhhHHHHHHHHHhcCCC
Confidence 9999999999999889999999999997
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=1.8e-15 Score=133.77 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=82.5
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEE
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~ 218 (262)
..++..++... .+.+|||+|||+|+++..|+ +.+.+|++||+|+.||+.|+++....... .......+..
T Consensus 45 ~~~l~~~l~~~-------~~~~vLD~GcG~G~~~~~la-~~g~~v~gvD~S~~ml~~A~~~~~~~~~~--~~~~~~~~~~ 114 (292)
T d1xvaa_ 45 KAWLLGLLRQH-------GCHRVLDVACGTGVDSIMLV-EEGFSVTSVDASDKMLKYALKERWNRRKE--PAFDKWVIEE 114 (292)
T ss_dssp HHHHHHHHHHT-------TCCEEEESSCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTTS--HHHHTCEEEE
T ss_pred HHHHHHHhhhc-------CCCEEEEecCCCcHHHHHHH-HcCCeeeeccCchHHHHHHHHHHHhcccc--cccceeeeee
Confidence 45666666532 35699999999999999999 55778999999999999999987543211 0011234445
Q ss_pred cCCCCCC---CCCCccchhhhhh-HHhhcCch-----hHHHHHHHHHhhccCC
Q 024811 219 VPLQDFT---PETGRYDVIWVQW-CIGHLTDD-----DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 219 ~d~~~~~---~~~~~yDlI~s~~-vl~hltD~-----el~~~l~~~~~~LkPG 262 (262)
.++.... +..++||+|+|.+ +++|++++ ++..+|++++++||||
T Consensus 115 ~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 167 (292)
T d1xvaa_ 115 ANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG 167 (292)
T ss_dssp CCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE
T ss_pred ccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC
Confidence 5553221 2236899999864 89999763 5678999999999997
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=8.8e-16 Score=131.75 Aligned_cols=97 Identities=13% Similarity=0.015 Sum_probs=77.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~~~~~yDlI 234 (262)
++.+|||||||+|..+..+++....+|++||+|+.|++.|+++.... ...+.++..++.+. ..+.++||.|
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~fD~i 125 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDGI 125 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhc-------ccccccccccccccccccccccccce
Confidence 57899999999999999999444568999999999999999987542 34567777765543 2233577766
Q ss_pred h-----hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 W-----VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~-----s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+ +...++|+.+.+ .+++++.++||||
T Consensus 126 ~fD~~~~~~~~~~~~~~~--~~~~~~~r~LkpG 156 (229)
T d1zx0a1 126 LYDTYPLSEETWHTHQFN--FIKNHAFRLLKPG 156 (229)
T ss_dssp EECCCCCBGGGTTTHHHH--HHHHTHHHHEEEE
T ss_pred eecccccccccccccCHH--HHHHHHHHHcCCC
Confidence 5 677889998887 9999999999997
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.2e-15 Score=131.92 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=75.2
Q ss_pred CCceeeEeeccccHHHHHHHHhc-------CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcce--EEEEcCCCCC---
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT--NFFCVPLQDF--- 224 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-------~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v--~f~~~d~~~~--- 224 (262)
+..+|||||||+|.++..|+... ...+++||||+.|++.|++++.... ...++ ++.+.+++++
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 114 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS-----NLENVKFAWHKETSSEYQSR 114 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC-----SCTTEEEEEECSCHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc-----ccccccccchhhhhhhhcch
Confidence 34589999999999999887432 1257999999999999999875421 12233 3445444332
Q ss_pred ---CCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 225 ---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 225 ---~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..++++||+|+|..++||++|++ .+|+++.++|+||
T Consensus 115 ~~~~~~~~~fD~I~~~~~l~~~~d~~--~~l~~l~~~Lkpg 153 (280)
T d1jqea_ 115 MLEKKELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTN 153 (280)
T ss_dssp HTTSSSCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEE
T ss_pred hcccCCCCceeEEEEccceecCCCHH--HHHHHHHhhCCCC
Confidence 22347999999999999999987 9999999999996
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.51 E-value=8.5e-15 Score=121.70 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=81.2
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++++.+|||+|||+|.++..++ +.+.+|+++|.|+.|++.|++++... ....+++++++|+.+...+...||+|
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA-~~~~~V~avD~~~~~l~~a~~n~~~~-----gl~~~v~~~~gda~~~~~~~~~~D~v 104 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELA-GRVRRVYAIDRNPEAISTTEMNLQRH-----GLGDNVTLMEGDAPEALCKIPDIDIA 104 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHH-TTSSEEEEEESCHHHHHHHHHHHHHT-----TCCTTEEEEESCHHHHHTTSCCEEEE
T ss_pred CCCCCEEEEEECCeEccccccc-ccceEEEEecCCHHHHHHHHHHHHHc-----CCCcceEEEECchhhcccccCCcCEE
Confidence 4578999999999999999999 66889999999999999999998653 12358899999998775555799999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++....+|+ ..+++.+.+.|+||
T Consensus 105 ~~~~~~~~~-----~~~~~~~~~~Lkpg 127 (186)
T d1l3ia_ 105 VVGGSGGEL-----QEILRIIKDKLKPG 127 (186)
T ss_dssp EESCCTTCH-----HHHHHHHHHTEEEE
T ss_pred EEeCccccc-----hHHHHHHHHHhCcC
Confidence 998765543 37899999999986
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=2.2e-14 Score=125.86 Aligned_cols=85 Identities=14% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||+|||+|.++..|+ +.++ ++++||+|+.|++.|+++. .+++|.++|+.++++.+++||+|
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~-~~~~~~~~~giD~s~~~~~~a~~~~-----------~~~~~~~~d~~~l~~~~~sfD~v 151 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFA-DALPEITTFGLDVSKVAIKAAAKRY-----------PQVTFCVASSHRLPFSDTSMDAI 151 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHH-HTCTTSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTSCSBCTTCEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHH-HHCCCCEEEEecchHhhhhhhhccc-----------ccccceeeehhhccCCCCCEEEE
Confidence 46799999999999999999 5443 7889999999999999864 36899999999998877899999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.++++|+ +++.++||||
T Consensus 152 ~~~~~~~~~---------~e~~rvLkpg 170 (268)
T d1p91a_ 152 IRIYAPCKA---------EELARVVKPG 170 (268)
T ss_dssp EEESCCCCH---------HHHHHHEEEE
T ss_pred eecCCHHHH---------HHHHHHhCCC
Confidence 998887763 5688999986
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.46 E-value=4e-14 Score=123.55 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=82.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
....+|||||||+|.++..|+ +.++ +++++|+ +.+++.|++++.... ...++.++..|+.+..| ..||+
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~-~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~-----~~~ri~~~~~d~~~~~p--~~~D~ 150 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIA-LRAPHLRGTLVEL-AGPAERARRRFADAG-----LADRVTVAEGDFFKPLP--VTADV 150 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-HHHHHHHHHHHHHTT-----CTTTEEEEECCTTSCCS--CCEEE
T ss_pred ccCCEEEEECCCCCHHHHHHH-HhhcCcEEEEecC-hHHHHHHHHHHhhcC-----Ccceeeeeeeecccccc--ccchh
Confidence 346789999999999999999 4444 6788897 889999999886542 23578999999876433 46999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++.++|||++|++..++|++++++|+||
T Consensus 151 v~~~~vLh~~~d~~~~~lL~~i~~~Lkpg 179 (256)
T d1qzza2 151 VLLSFVLLNWSDEDALTILRGCVRALEPG 179 (256)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred hhccccccccCcHHHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999996
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=3.8e-14 Score=124.32 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=76.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..++ +.+.+|+++|.|+.|++.|++|+... .-+++|+++|+.+..+ .++||+|+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa-~~g~~V~gvDis~~av~~A~~na~~n-------~~~~~~~~~d~~~~~~-~~~fD~V~ 189 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAE-KLGGKALGVDIDPMVLPQAEANAKRN-------GVRPRFLEGSLEAALP-FGPFDLLV 189 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHH-HTTCEEEEEESCGGGHHHHHHHHHHT-------TCCCEEEESCHHHHGG-GCCEEEEE
T ss_pred CccCEEEEcccchhHHHHHHH-hcCCEEEEEECChHHHHHHHHHHHHc-------CCceeEEecccccccc-ccccchhh
Confidence 367899999999999999988 66789999999999999999997542 2256788998876544 36999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++...++ +..++..+.++||||
T Consensus 190 ani~~~~-----l~~l~~~~~~~LkpG 211 (254)
T d2nxca1 190 ANLYAEL-----HAALAPRYREALVPG 211 (254)
T ss_dssp EECCHHH-----HHHHHHHHHHHEEEE
T ss_pred hcccccc-----HHHHHHHHHHhcCCC
Confidence 9865544 347889999999996
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=8.1e-15 Score=125.64 Aligned_cols=107 Identities=11% Similarity=-0.036 Sum_probs=75.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCC-----------------------Cc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM-----------------------HK 212 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~-----------------------~~ 212 (262)
.++.+|||+|||+|.++..++...+.+|+++|+|+.|++.|++++.......... ..
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 3577999999999999988885666789999999999999999875321100000 00
Q ss_pred ce-EEEEcCC--C--CCCCCCCccchhhhhhHHhhcCc--hhHHHHHHHHHhhccCC
Q 024811 213 AT-NFFCVPL--Q--DFTPETGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 213 ~v-~f~~~d~--~--~~~~~~~~yDlI~s~~vl~hltD--~el~~~l~~~~~~LkPG 262 (262)
.+ .....+. . ..+...++||+|++.+++||+.. +++..+++++.++||||
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpG 186 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG 186 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCC
Confidence 00 1111111 1 11223478999999999999975 45678999999999997
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.39 E-value=9.4e-14 Score=118.31 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=77.4
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
++++.+|||+|||+|..|..|++...+ .|+++|.++.+++.|++++... ...++.++++|..+..+..++||
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~------~~~n~~~~~~d~~~~~~~~~~fD 146 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL------GIENVIFVCGDGYYGVPEFSPYD 146 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCCGGGCCEE
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh------cccccccccCchHHccccccchh
Confidence 567899999999999999999954443 6999999999999999998653 34578899999877656567899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++..+++|+++. +.+.|+||
T Consensus 147 ~I~~~~~~~~~p~~--------l~~~LkpG 168 (213)
T d1dl5a1 147 VIFVTVGVDEVPET--------WFTQLKEG 168 (213)
T ss_dssp EEEECSBBSCCCHH--------HHHHEEEE
T ss_pred hhhhhccHHHhHHH--------HHHhcCCC
Confidence 99999999998752 45668886
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.38 E-value=3.4e-13 Score=116.40 Aligned_cols=98 Identities=10% Similarity=-0.033 Sum_probs=79.9
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCc
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGR 230 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~ 230 (262)
++.++.+|||+|||+|..+.+|+ +.+ ..|.+||.|+.|++.++++... ..++.++..|.....+ .+..
T Consensus 71 ~ikpG~~VLDlGcGsG~~~~~la-~~~~~g~V~aVDiS~~~i~~a~~~a~~--------~~ni~~i~~d~~~~~~~~~~~ 141 (230)
T d1g8sa_ 71 PIKRDSKILYLGASAGTTPSHVA-DIADKGIVYAIEYAPRIMRELLDACAE--------RENIIPILGDANKPQEYANIV 141 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHH-HHTTTSEEEEEESCHHHHHHHHHHTTT--------CTTEEEEECCTTCGGGGTTTC
T ss_pred CCCCCCEEEEeCEEcCHHHHHHH-HhCCCCEEEEEeCcHHHHHHHHHHHhh--------hcccceEEEeeccCccccccc
Confidence 46778999999999999999999 554 3699999999999999998642 2467788888776532 3356
Q ss_pred cchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++++...++|..+.+ .+++++++.||||
T Consensus 142 ~~v~~i~~~~~~~~~~~--~~l~~~~r~LKpg 171 (230)
T d1g8sa_ 142 EKVDVIYEDVAQPNQAE--ILIKNAKWFLKKG 171 (230)
T ss_dssp CCEEEEEECCCSTTHHH--HHHHHHHHHEEEE
T ss_pred ceeEEeeccccchHHHH--HHHHHHHHhcccC
Confidence 78877777788888777 8999999999996
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.5e-13 Score=120.07 Aligned_cols=108 Identities=10% Similarity=0.078 Sum_probs=77.2
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCC------------------------CC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP------------------------DM 210 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~------------------------~~ 210 (262)
...+.+|||||||+|.++..++.+.+.+|+++|.|+.|++.+++.+........ ..
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 335789999999999988766657788999999999999999987653211000 00
Q ss_pred CcceEEEEcCCCCC------CCCCCccchhhhhhHHhhcCc--hhHHHHHHHHHhhccCC
Q 024811 211 HKATNFFCVPLQDF------TPETGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 211 ~~~v~f~~~d~~~~------~~~~~~yDlI~s~~vl~hltD--~el~~~l~~~~~~LkPG 262 (262)
.........|+..- ....++||+|++.+++||+.. +++..+++++.++||||
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPG 191 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG 191 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCC
Confidence 00112334455331 122368999999999999973 35778999999999997
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.37 E-value=3.1e-13 Score=119.12 Aligned_cols=98 Identities=15% Similarity=0.059 Sum_probs=82.6
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
+.++.+|||+|||+|.+|..|+...++ +|..+|.+++|++.|++++..... ....++.|.++|+.+...+++.||
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~---~~~~nv~~~~~d~~~~~~~~~~fD 170 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG---QPPDNWRLVVSDLADSELPDGSVD 170 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---SCCTTEEEECSCGGGCCCCTTCEE
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc---CCCceEEEEecccccccccCCCcc
Confidence 567999999999999999999955454 799999999999999998865311 123588999999988766668999
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++ |++++. .++.++.++||||
T Consensus 171 aV~l-----dlp~P~--~~l~~~~~~LkpG 193 (264)
T d1i9ga_ 171 RAVL-----DMLAPW--EVLDAVSRLLVAG 193 (264)
T ss_dssp EEEE-----ESSCGG--GGHHHHHHHEEEE
T ss_pred eEEE-----ecCCHH--HHHHHHHhccCCC
Confidence 9874 799998 9999999999997
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=7.5e-13 Score=118.96 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=81.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+++....+|.++|.|+ +++.|+++.... ....++.++.+++.+++.+.++||+|++
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~-----~~~~~i~~i~~~~~~l~~~~~~~D~i~s 111 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELN-----GFSDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHT-----TCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHh-----CccccceEEEeehhhccCcccceeEEEE
Confidence 4779999999999999999844456899999996 778888776542 2345789999999999766679999999
Q ss_pred hhHHhhcCch-hHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDD-DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~-el~~~l~~~~~~LkPG 262 (262)
.++.+++..+ .+..++..+.++||||
T Consensus 112 e~~~~~~~~e~~~~~~~~a~~r~Lkpg 138 (328)
T d1g6q1_ 112 EWMGYFLLYESMMDTVLYARDHYLVEG 138 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEE
T ss_pred EecceeeccchhHHHHHHHHHhccCCC
Confidence 9888777764 4557999999999996
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.33 E-value=7.3e-13 Score=115.84 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=80.9
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCcc
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~y 231 (262)
++.++.+|||+|||+|.+|..|+...+ .+|+++|.++.+++.|++++.... ...+++++..|+.++.++ ..|
T Consensus 82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~-----~~~nv~~~~~Di~~~~~~-~~f 155 (250)
T d1yb2a1 82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY-----DIGNVRTSRSDIADFISD-QMY 155 (250)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS-----CCTTEEEECSCTTTCCCS-CCE
T ss_pred CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc-----CCCceEEEEeeeeccccc-cee
Confidence 366789999999999999999995433 379999999999999999986431 245899999999988554 689
Q ss_pred chhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|++ +++++. .+|..+.++||||
T Consensus 156 D~V~l-----d~p~p~--~~l~~~~~~LKpG 179 (250)
T d1yb2a1 156 DAVIA-----DIPDPW--NHVQKIASMMKPG 179 (250)
T ss_dssp EEEEE-----CCSCGG--GSHHHHHHTEEEE
T ss_pred eeeee-----cCCchH--HHHHHHHHhcCCC
Confidence 99875 578887 8999999999997
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.31 E-value=5.8e-13 Score=113.18 Aligned_cols=98 Identities=9% Similarity=-0.030 Sum_probs=75.3
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCcc
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~y 231 (262)
++.++.+|||+|||+|..+..|+ +.. .+|.+||+|+.|++.|+++... ..++.++..|..+.......+
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la-~~v~~g~V~gvDis~~~i~~a~~~a~~--------~~ni~~i~~d~~~~~~~~~~~ 123 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLA-DIVDEGIIYAVEYSAKPFEKLLELVRE--------RNNIIPLLFDASKPWKYSGIV 123 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHH-HHTTTSEEEEECCCHHHHHHHHHHHHH--------CSSEEEECSCTTCGGGTTTTC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHH-HhccCCeEEEEeCCHHHHHHHHHHhhc--------cCCceEEEeeccCcccccccc
Confidence 46678999999999999999999 543 3699999999999999998653 247899999988764333344
Q ss_pred chhhhh-hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 232 DVIWVQ-WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~-~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|.+.+. ..++|..+.+ .+++++.+.||||
T Consensus 124 ~~vd~v~~~~~~~~~~~--~~l~~~~~~Lkpg 153 (209)
T d1nt2a_ 124 EKVDLIYQDIAQKNQIE--ILKANAEFFLKEK 153 (209)
T ss_dssp CCEEEEEECCCSTTHHH--HHHHHHHHHEEEE
T ss_pred ceEEEEEecccChhhHH--HHHHHHHHHhccC
Confidence 444322 2356666666 8999999999996
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.8e-12 Score=114.11 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=79.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||||||+|.++..+++....+|.++|.|+.|+..++..... ....++.+++++++++..+..+||+|+|
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~------~~~~~i~~~~~~~~~l~~~~~~~D~Ivs 108 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN------KLEDTITLIKGKIEEVHLPVEKVDVIIS 108 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHT------TCTTTEEEEESCTTTSCCSCSCEEEEEE
T ss_pred CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHh------CCCccceEEEeeHHHhcCccccceEEEE
Confidence 5778999999999999999944346899999999987654443221 2345799999999999766679999999
Q ss_pred hhHHhhcCchh-HHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~e-l~~~l~~~~~~LkPG 262 (262)
.+..+++..+. +..++..+.+.|+||
T Consensus 109 e~~~~~~~~e~~~~~~~~a~~~~Lkp~ 135 (311)
T d2fyta1 109 EWMGYFLLFESMLDSVLYAKNKYLAKG 135 (311)
T ss_dssp CCCBTTBTTTCHHHHHHHHHHHHEEEE
T ss_pred eeeeeecccccccHHHHHHHHhcCCCC
Confidence 98888887764 446888888999986
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=8.9e-13 Score=118.99 Aligned_cols=118 Identities=12% Similarity=0.017 Sum_probs=85.2
Q ss_pred HHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhccccccc---CCCCCcc
Q 024811 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHM---APDMHKA 213 (262)
Q Consensus 138 s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~---~~~~~~~ 213 (262)
...++..++.. + +++++.+|||+|||+|.++..+++.. +.++.|||+|+.|++.|++++...+.+ ......+
T Consensus 136 ~~~~~~~~~~~-~---~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~ 211 (328)
T d1nw3a_ 136 SFDLVAQMIDE-I---KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 211 (328)
T ss_dssp CHHHHHHHHHH-S---CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHH-c---CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 34556666653 2 35678899999999999999998554 357999999999999999987653221 0112357
Q ss_pred eEEEEcCCCCCCCCCCc--cchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 214 TNFFCVPLQDFTPETGR--YDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 214 v~f~~~d~~~~~~~~~~--yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.|+++|+.+.+..+.. +|+|+++. +.|.++. ...|+++.+.||||
T Consensus 212 i~~~~gd~~~~~~~~~~~~advi~~~~-~~f~~~~--~~~l~e~~r~LKpG 259 (328)
T d1nw3a_ 212 YTLERGDFLSEEWRERIANTSVIFVNN-FAFGPEV--DHQLKERFANMKEG 259 (328)
T ss_dssp EEEEECCTTSHHHHHHHHHCSEEEECC-TTTCHHH--HHHHHHHHTTCCTT
T ss_pred eEEEECcccccccccccCcceEEEEcc-eecchHH--HHHHHHHHHhCCCC
Confidence 99999999987543323 46666653 4555444 48999999999998
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=2.7e-12 Score=114.83 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=79.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||||||+|.++..+++....+|++||.|+.+ ..+++.+... ....++.++++++.+++.+.++||+|++
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n-----~~~~~v~~~~~~~~~~~~~~~~~D~ivs 106 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKAN-----KLDHVVTIIKGKVEEVELPVEKVDIIIS 106 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHT-----TCTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHh-----CCccccceEeccHHHcccccceeEEEee
Confidence 467899999999999999994334689999999865 5555544321 1235799999999999776679999999
Q ss_pred hhHHhhcCch-hHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDD-DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~-el~~~l~~~~~~LkPG 262 (262)
.+..+++..+ .+..++..+.+.|+||
T Consensus 107 ~~~~~~l~~e~~~~~~l~~~~r~Lkp~ 133 (316)
T d1oria_ 107 EWMGYCLFYESMLNTVLHARDKWLAPD 133 (316)
T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEEE
T ss_pred eeeeeeeccHHHHHHHHHHHHhcCCCC
Confidence 9888888765 4568999999999996
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.24 E-value=2.8e-12 Score=110.33 Aligned_cols=91 Identities=16% Similarity=0.055 Sum_probs=74.8
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
+.++.+|||+|||+|++|..|+ +.+.+|+.+|.++.+++.|++++.. ..++.++.+|.....++.++||+|
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La-~l~~~V~aiE~~~~~~~~A~~~~~~--------~~nv~~~~~d~~~g~~~~~pfD~I 138 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIA-EIVDKVVSVEINEKMYNYASKLLSY--------YNNIKLILGDGTLGYEEEKPYDRV 138 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH-HHSSEEEEEESCHHHHHHHHHHHTT--------CSSEEEEESCGGGCCGGGCCEEEE
T ss_pred hcccceEEEecCCCCHHHHHHH-HHhcccccccccHHHHHHHHHHHhc--------ccccccccCchhhcchhhhhHHHH
Confidence 5578999999999999999988 6788999999999999999998753 358999999986644555789999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++..++.|+++. +.+.|+||
T Consensus 139 iv~~a~~~ip~~--------l~~qLk~G 158 (224)
T d1vbfa_ 139 VVWATAPTLLCK--------PYEQLKEG 158 (224)
T ss_dssp EESSBBSSCCHH--------HHHTEEEE
T ss_pred HhhcchhhhhHH--------HHHhcCCC
Confidence 999888887752 34567765
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.19 E-value=5.5e-12 Score=106.83 Aligned_cols=97 Identities=10% Similarity=0.150 Sum_probs=78.2
Q ss_pred eeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccchhhh
Q 024811 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIWV 236 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yDlI~s 236 (262)
.|||||||+|..+..|++.. ...+.+||+++.++..|.+++... ...|+.|+++|+.++. .+++++|.|++
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~------~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i 105 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS------EAQNVKLLNIDADTLTDVFEPGEVKRVYL 105 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS------CCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred eEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHH------hccCchhcccchhhhhcccCchhhhcccc
Confidence 69999999999999999443 246899999999999999987643 3468999999987753 34578999999
Q ss_pred hhHHhhcCchhH------HHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDF------VSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el------~~~l~~~~~~LkPG 262 (262)
+++..|...... ..||+.+.++||||
T Consensus 106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg 137 (204)
T d2fcaa1 106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG 137 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred ccccccchhhhcchhhhHHHHHHHHHHhCCCC
Confidence 888766554321 26999999999997
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.7e-12 Score=111.33 Aligned_cols=99 Identities=15% Similarity=0.069 Sum_probs=76.2
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
+.++.+|||+|||+|+.|..|+...+ .+|++||.++++++.|++++...... .....++.+..+|..+..++.++||
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~-~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT-LLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-HHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcc-cccccceEEEEeecccccchhhhhh
Confidence 45688999999999999999984333 37999999999999999988643110 0012467889999877666667999
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++..+++|+++. +.+.||||
T Consensus 153 ~I~~~~~~~~ip~~--------l~~~LkpG 174 (224)
T d1i1na_ 153 AIHVGAAAPVVPQA--------LIDQLKPG 174 (224)
T ss_dssp EEEECSBBSSCCHH--------HHHTEEEE
T ss_pred hhhhhcchhhcCHH--------HHhhcCCC
Confidence 99999998888652 55678876
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=1.8e-11 Score=107.56 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=76.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
+.++.+|||+|||+|.+|..|+...+ .+|+++|.+++|++.|++++.... ...++.+...|+.+..+ ...||
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g-----~~~~v~~~~~d~~~~~~-~~~~D 174 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG-----LIERVTIKVRDISEGFD-EKDVD 174 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT-----CGGGEEEECCCGGGCCS-CCSEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc-----cccCcEEEecccccccc-cccee
Confidence 56799999999999999999995443 479999999999999999987541 23577888888754322 35788
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.|+ +|++++. ++|.++.++||||
T Consensus 175 ~V~-----~d~p~p~--~~l~~~~~~LKpG 197 (266)
T d1o54a_ 175 ALF-----LDVPDPW--NYIDKCWEALKGG 197 (266)
T ss_dssp EEE-----ECCSCGG--GTHHHHHHHEEEE
T ss_pred eeE-----ecCCCHH--HHHHHHHhhcCCC
Confidence 764 6899998 9999999999997
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.15 E-value=2.5e-11 Score=112.69 Aligned_cols=134 Identities=13% Similarity=0.025 Sum_probs=86.0
Q ss_pred cccCCCCCCcccchh-hHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhh
Q 024811 122 GVLGGFGNVNEVDIK-GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 122 gvlgGy~~is~~di~-~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~ 199 (262)
+-|+.|..+++.-+. -...|+..++.. + +++++.++||||||+|+++..++.... .+|.|||.|+.|++.|+++
T Consensus 184 ~~L~~Y~~fs~~vYGEl~~~~i~~Il~~-l---~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~ 259 (406)
T d1u2za_ 184 NKLKHYKAFSNYVYGELLPNFLSDVYQQ-C---QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQ 259 (406)
T ss_dssp GGGCSCCSSGGGCCCCBCHHHHHHHHHH-T---TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHH
T ss_pred HHhcccCCCCCCccccCCHHHHHHHHHH-h---CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Confidence 345667766655553 345677777763 2 366789999999999999999996654 5899999999999999998
Q ss_pred ccccccc---CCCCCcceEE-EEcCCCCCCCC---CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 200 LAPENHM---APDMHKATNF-FCVPLQDFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 200 l~~a~~~---~~~~~~~v~f-~~~d~~~~~~~---~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
....+.. .........+ ..+++.+.+.. -..+|+|+++. ++| ++++..+|+++.+.||||
T Consensus 260 ~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f--~~~l~~~L~ei~r~LKPG 326 (406)
T d1u2za_ 260 YEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-FLF--DEDLNKKVEKILQTAKVG 326 (406)
T ss_dssp HHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-TTC--CHHHHHHHHHHHTTCCTT
T ss_pred HHHHhhhhhhhccccccceeeeeechhhccccccccccceEEEEec-ccC--chHHHHHHHHHHHhcCCC
Confidence 7643211 0001112222 23333322110 02345555542 233 455669999999999998
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.14 E-value=3.4e-11 Score=103.51 Aligned_cols=97 Identities=11% Similarity=0.004 Sum_probs=74.8
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC---CCCC
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPET 228 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~---~~~~ 228 (262)
++.++.+|||+|||+|..+.+|+...+ ..|.+||+|+.|++.+++++.. ..++..+..|.... ....
T Consensus 70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~--------~~~~~~i~~d~~~~~~~~~~~ 141 (227)
T d1g8aa_ 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--------RRNIVPILGDATKPEEYRALV 141 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------CTTEEEEECCTTCGGGGTTTC
T ss_pred ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh--------cCCceEEEEECCCcccccccc
Confidence 567899999999999999999995444 3799999999999999998753 23567777776543 2223
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+|+|++. +.|..+.+ .+++++.+.||||
T Consensus 142 ~~vD~i~~d--~~~~~~~~--~~l~~~~~~Lkpg 171 (227)
T d1g8aa_ 142 PKVDVIFED--VAQPTQAK--ILIDNAEVYLKRG 171 (227)
T ss_dssp CCEEEEEEC--CCSTTHHH--HHHHHHHHHEEEE
T ss_pred cceEEEEEE--ccccchHH--HHHHHHHHhcccC
Confidence 567877654 45555556 8999999999986
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=3.8e-11 Score=108.38 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=78.1
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccc-----cCCCCCcceEEEEcCCCCCCC-
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENH-----MAPDMHKATNFFCVPLQDFTP- 226 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~-----~~~~~~~~v~f~~~d~~~~~~- 226 (262)
+.++.+|||+|||+|.+|..|+...++ +|..+|.+++|++.|++++..... .......+++|+..|+.++..
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 567999999999999999999955444 699999999999999999864311 012234589999999987643
Q ss_pred -CCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 227 -ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 227 -~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
....||.|+. .++++. .+|.++.++||||
T Consensus 176 ~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKpG 205 (324)
T d2b25a1 176 IKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKHG 205 (324)
T ss_dssp -----EEEEEE-----CSSSTT--TTHHHHGGGEEEE
T ss_pred cCCCCcceEee-----cCcCHH--HHHHHHHHhccCC
Confidence 3368999874 678887 8999999999997
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.11 E-value=2.4e-11 Score=102.53 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=60.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+.+|||+|||+|.++..++.....+|++||.++.+++.|++|+. +++|+++|+.+++ ++||+|++
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~-----------~~~~~~~D~~~l~---~~fD~Vi~ 113 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVSEIS---GKYDTWIM 113 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGGGCC---CCEEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc-----------cccEEEEehhhcC---CcceEEEe
Confidence 477999999999999998884445679999999999999999863 5789999998763 58999999
Q ss_pred hhHH
Q 024811 237 QWCI 240 (262)
Q Consensus 237 ~~vl 240 (262)
|.++
T Consensus 114 NPPf 117 (197)
T d1ne2a_ 114 NPPF 117 (197)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9765
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.11 E-value=5.6e-11 Score=100.48 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=75.3
Q ss_pred ceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccchhh
Q 024811 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yDlI~ 235 (262)
-.|||||||+|..+..+++.. -..+.++|+++.++..|.+++... ..+|+.++.+|+.++. .++.++|.|+
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~------~l~Ni~~~~~da~~l~~~~~~~~~~~i~ 106 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV------GVPNIKLLWVDGSDLTDYFEDGEIDRLY 106 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH------CCSSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhh------ccccceeeecCHHHHhhhccCCceehhc
Confidence 369999999999999999543 346899999999999998887643 3468999999998864 2347899988
Q ss_pred hhhHHhhcCchh------HHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDD------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~e------l~~~l~~~~~~LkPG 262 (262)
++++-.+..... -..||+.+.+.|+||
T Consensus 107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lkpg 139 (204)
T d1yzha1 107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN 139 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred ccccccccchhhhhhhhhHHHHHHHHHHhCCCC
Confidence 776543322211 027999999999997
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.09 E-value=2.9e-11 Score=103.26 Aligned_cols=86 Identities=17% Similarity=0.160 Sum_probs=72.5
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
+.++.+|||||||+|+.|..|+.-.+.+|+.+|.++.+++.|++++... ...++.++++|..+-.+..++||.|
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~------g~~nv~~~~gd~~~g~~~~~pfD~I 149 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERA------GVKNVHVILGDGSKGFPPKAPYDVI 149 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCCGGGCCEEEE
T ss_pred cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHc------CCceeEEEECccccCCcccCcceeE
Confidence 5578899999999999999988433557999999999999999998754 3468999999997755656899999
Q ss_pred hhhhHHhhcCch
Q 024811 235 WVQWCIGHLTDD 246 (262)
Q Consensus 235 ~s~~vl~hltD~ 246 (262)
++..++.++++.
T Consensus 150 iv~~a~~~ip~~ 161 (215)
T d1jg1a_ 150 IVTAGAPKIPEP 161 (215)
T ss_dssp EECSBBSSCCHH
T ss_pred EeecccccCCHH
Confidence 999888887753
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.07 E-value=7.9e-11 Score=99.09 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=62.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+.+|||+|||+|.++..++.....+|++||.|+.+++.|++++... ....+++++|..++. ++||+|++
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~-------~~~~~~~~~d~~~~~---~~fD~Vi~ 115 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF-------KGKFKVFIGDVSEFN---SRVDIVIM 115 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG-------TTSEEEEESCGGGCC---CCCSEEEE
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHc-------CCCceEEECchhhhC---CcCcEEEE
Confidence 46799999999999999988444468999999999999999997642 236789999987762 58999999
Q ss_pred hhHHhhc
Q 024811 237 QWCIGHL 243 (262)
Q Consensus 237 ~~vl~hl 243 (262)
+.+++..
T Consensus 116 nPP~~~~ 122 (201)
T d1wy7a1 116 NPPFGSQ 122 (201)
T ss_dssp CCCCSSS
T ss_pred cCccccc
Confidence 9775443
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=8.2e-11 Score=103.86 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=62.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.+.+|||+|||+|-++..++... ..+|+++|.|+.+++.|++|+... ...++.|+.+|+.+..+. .+||+|+
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~------~~~~v~~~~~d~~~~~~~-~~fDlIv 180 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL------AIKNIHILQSDWFSALAG-QQFAMIV 180 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH------TCCSEEEECCSTTGGGTT-CCEEEEE
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHh------CcccceeeecccccccCC-CceeEEE
Confidence 46789999999999999999544 348999999999999999998643 234799999999875443 6899999
Q ss_pred hhhH
Q 024811 236 VQWC 239 (262)
Q Consensus 236 s~~v 239 (262)
||.+
T Consensus 181 sNPP 184 (274)
T d2b3ta1 181 SNPP 184 (274)
T ss_dssp ECCC
T ss_pred ecch
Confidence 9965
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.00 E-value=2.2e-10 Score=100.11 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=74.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+++....+|.++|+|+.+++.+++++..- ....++.++++|..++.+. +.||.|++
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n-----~l~~~v~~~~~D~~~~~~~-~~~D~Ii~ 180 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN-----KVEDRMSAYNMDNRDFPGE-NIADRILM 180 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHT-----TCTTTEEEECSCTTTCCCC-SCEEEEEE
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHh-----CCCceEEEEEcchHHhccC-CCCCEEEE
Confidence 57899999999999999999554468999999999999999998642 1234689999999998665 68999987
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.. +... .++..+.+.|+||
T Consensus 181 ~~p----~~~~--~~l~~a~~~l~~g 200 (260)
T d2frna1 181 GYV----VRTH--EFIPKALSIAKDG 200 (260)
T ss_dssp CCC----SSGG--GGHHHHHHHEEEE
T ss_pred CCC----CchH--HHHHHHHhhcCCC
Confidence 632 2223 5677777777765
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.96 E-value=1.1e-10 Score=93.81 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=64.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI~ 235 (262)
.+.+|||+|||+|.++...+.+...+|++||.++.+++.+++++.... ...+++++++|+..+. ...++||+|+
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~-----~~~~~~ii~~D~~~~l~~~~~~fDiIf 88 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTK-----AENRFTLLKMEAERAIDCLTGRFDLVF 88 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTT-----CGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcc-----cccchhhhcccccccccccccccceeE
Confidence 477999999999999999885656799999999999999999986531 2346899999987752 2246899999
Q ss_pred hhhHH
Q 024811 236 VQWCI 240 (262)
Q Consensus 236 s~~vl 240 (262)
+..+.
T Consensus 89 ~DPPy 93 (152)
T d2esra1 89 LDPPY 93 (152)
T ss_dssp ECCSS
T ss_pred echhh
Confidence 88653
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.92 E-value=5.9e-11 Score=101.67 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=73.8
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--------CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--------~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~ 226 (262)
+.++.+|||||||+|+.|..|+ +.. .+|+.||.++++++.|++++...... .....++.+..+|..+..+
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la-~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~-~~~~~nv~~~~~d~~~~~~ 155 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFY-RYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS-MLDSGQLLIVEGDGRKGYP 155 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHH-HHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH-HHHHTSEEEEESCGGGCCG
T ss_pred cCCCCeEEEecCCCCHHHHHHH-HHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh-hcCccEEEEEecccccccc
Confidence 4468899999999999999888 432 37999999999999999986432100 0012478999999877656
Q ss_pred CCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 227 ~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++||.|++..++.++++. +.+.|+||
T Consensus 156 ~~~~fD~Iiv~~a~~~~p~~--------l~~~Lk~g 183 (223)
T d1r18a_ 156 PNAPYNAIHVGAAAPDTPTE--------LINQLASG 183 (223)
T ss_dssp GGCSEEEEEECSCBSSCCHH--------HHHTEEEE
T ss_pred cccceeeEEEEeechhchHH--------HHHhcCCC
Confidence 56799999999988887742 44566664
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.90 E-value=4.8e-10 Score=96.96 Aligned_cols=88 Identities=15% Similarity=0.267 Sum_probs=70.7
Q ss_pred CceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
..+|||||||+|.++..++ +.++ ++++.|. |..++.+. ...+++|+.+|+.+-.| .+|+++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~-~~~P~l~~~v~Dl-p~vi~~~~------------~~~rv~~~~gD~f~~~p---~aD~~~ 143 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIIC-ETFPKLKCIVFDR-PQVVENLS------------GSNNLTYVGGDMFTSIP---NADAVL 143 (244)
T ss_dssp CSEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-HHHHTTCC------------CBTTEEEEECCTTTCCC---CCSEEE
T ss_pred ceEEEEecCCccHHHHHHH-HhCCCCeEEEecC-HHHHHhCc------------ccCceEEEecCcccCCC---CCcEEE
Confidence 4689999999999999999 5554 6777787 33333221 23479999999976422 589999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++||+.+|++.+++|++++++|+||
T Consensus 144 l~~vLHdw~d~~~~~iL~~~~~al~pg 170 (244)
T d1fp2a2 144 LKYILHNWTDKDCLRILKKCKEAVTND 170 (244)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHSGG
T ss_pred EEeecccCChHHHHHHHHHHHHHcCcc
Confidence 999999999999999999999999985
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.87 E-value=6.1e-10 Score=96.35 Aligned_cols=89 Identities=11% Similarity=0.155 Sum_probs=70.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
...+|||||||+|.++..|+ +.++ ++++.|. |..++ .+ ....+++++.+|+.+-.| ..|+|
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~-~~~P~l~~~v~Dl-p~vi~-------~~-----~~~~ri~~~~gd~~~~~p---~~D~~ 143 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELII-SKYPLIKGINFDL-PQVIE-------NA-----PPLSGIEHVGGDMFASVP---QGDAM 143 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-HHHHT-------TC-----CCCTTEEEEECCTTTCCC---CEEEE
T ss_pred CCcEEEEecCCCcHHHHHHH-HHCCCCeEEEecc-hhhhh-------cc-----CCCCCeEEecCCcccccc---cceEE
Confidence 45799999999999999999 5555 5667786 33332 11 123478999999976433 46999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.++||+.+|++...+|++++++|+||
T Consensus 144 ~l~~vLh~~~de~~~~iL~~~~~aL~pg 171 (244)
T d1fp1d2 144 ILKAVCHNWSDEKCIEFLSNCHKALSPN 171 (244)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred EEehhhhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999986
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.86 E-value=5.1e-10 Score=100.42 Aligned_cols=101 Identities=10% Similarity=0.018 Sum_probs=75.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----CCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~----~~~~~yD 232 (262)
++.+|||+|||+|.++..++.....+|+++|.|+.+++.|++|+... ....+++|+++|+.++. ....+||
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~n-----gl~~~~~~~~~d~~~~~~~~~~~~~~fD 219 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLN-----GVEDRMKFIVGSAFEEMEKLQKKGEKFD 219 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT-----TCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHc-----CCCccceeeechhhhhhHHHHhccCCCC
Confidence 47899999999999999999544568999999999999999998642 12347889999987642 1236899
Q ss_pred hhhhhhHHhhcCch-------hHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDD-------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~-------el~~~l~~~~~~LkPG 262 (262)
+|++..+..-.... ...+++..+.++|+||
T Consensus 220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG 256 (324)
T d2as0a2 220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG 256 (324)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE
T ss_pred chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99987542211111 2335778888888886
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.85 E-value=2.2e-10 Score=102.69 Aligned_cols=99 Identities=18% Similarity=0.061 Sum_probs=75.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC----CCCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~----~~~~~~yD 232 (262)
++.+|||++||+|.++..++ ..+.+|+++|.|+.+++.|++++... ...+++|+++|..++ ....++||
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a-~g~~~V~~vD~s~~al~~a~~n~~~n------gl~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLA-LGFREVVAVDSSAEALRRAEENARLN------GLGNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHH-HHEEEEEEEESCHHHHHHHHHHHHHT------TCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeeeccCCCCcHHHHHHH-hcCCcEEeecchHHHHHHHHHHHHHc------CCCCcceeeccHHHHhhhhHhhhcCCC
Confidence 47899999999999999998 66789999999999999999998642 235789999998775 22236899
Q ss_pred hhhhhhHHhhcCch-------hHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDD-------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~-------el~~~l~~~~~~LkPG 262 (262)
+|++..+....... ...+++..+.++|+||
T Consensus 218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG 254 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG 254 (318)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE
T ss_pred EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99987542222211 2235788888899986
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.76 E-value=1.4e-09 Score=89.01 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=57.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC----CCCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~----~~~~~~yD 232 (262)
.+.+|||+|||+|.++..++ ..+.+|+++|.|+.+++.+++++.... . ..+++..+...+ .....+||
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~-~~ga~vv~vD~~~~a~~~~~~N~~~~~-----~--~~~v~~~~~d~~~~~~~~~~~~fD 112 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAA-SEGWEAVLVEKDPEAVRLLKENVRRTG-----L--GARVVALPVEVFLPEAKAQGERFT 112 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHH-HTTCEEEEECCCHHHHHHHHHHHHHHT-----C--CCEEECSCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeccccchhhhhhh-hccchhhhcccCHHHHhhhhHHHHhhc-----c--ccceeeeehhcccccccccCCccc
Confidence 57799999999999999988 567789999999999999999986421 1 123444443322 12236899
Q ss_pred hhhhhhHHhh
Q 024811 233 VIWVQWCIGH 242 (262)
Q Consensus 233 lI~s~~vl~h 242 (262)
+|++..+++.
T Consensus 113 ~If~DPPY~~ 122 (171)
T d1ws6a1 113 VAFMAPPYAM 122 (171)
T ss_dssp EEEECCCTTS
T ss_pred eeEEcccccc
Confidence 9999877543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.76 E-value=2.3e-09 Score=95.92 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=84.9
Q ss_pred chhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcc
Q 024811 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (262)
Q Consensus 134 di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~ 213 (262)
|....+.++...+.. ..++.+|||+.||||.++..++ ..+.+|+.||.|+.+++.|++|+..-. ....+
T Consensus 115 dqr~nr~~~~~~~~~------~~~~~rVLdlf~~tG~~sl~aa-~~GA~V~~VD~s~~al~~a~~N~~ln~----~~~~~ 183 (309)
T d2igta1 115 EQIVHWEWLKNAVET------ADRPLKVLNLFGYTGVASLVAA-AAGAEVTHVDASKKAIGWAKENQVLAG----LEQAP 183 (309)
T ss_dssp GGHHHHHHHHHHHHH------SSSCCEEEEETCTTCHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHT----CTTSC
T ss_pred chhHHHHHHHHHHhh------ccCCCeEEEecCCCcHHHHHHH-hCCCeEEEEeChHHHHHHHHHhhhhhc----ccCCc
Confidence 444566777776652 2357799999999999999999 667799999999999999999975421 11236
Q ss_pred eEEEEcCCCCCCC----CCCccchhhhhhH-HhhcC-------chhHHHHHHHHHhhccCC
Q 024811 214 TNFFCVPLQDFTP----ETGRYDVIWVQWC-IGHLT-------DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 214 v~f~~~d~~~~~~----~~~~yDlI~s~~v-l~hlt-------D~el~~~l~~~~~~LkPG 262 (262)
++|++.|+.++-. ...+||+|++..+ +..-+ ...+..++..|.++|+||
T Consensus 184 ~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~ 244 (309)
T d2igta1 184 IRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK 244 (309)
T ss_dssp EEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT
T ss_pred EEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCC
Confidence 8999999977621 1368999998643 21111 122346778888999885
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.75 E-value=1.4e-08 Score=84.38 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=72.6
Q ss_pred CCceeeEeeccccHH----HHHHHHhcC-----CcEEEEeCCHHHHHHHHhhcccccccC--------------C-----
Q 024811 157 QHLVALDCGSGIGRI----TKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPENHMA--------------P----- 208 (262)
Q Consensus 157 ~~~~VLDlGcGtG~l----t~~La~~~~-----~~V~~VD~s~~mld~Ar~~l~~a~~~~--------------~----- 208 (262)
+..+|+++|||||.- +..|..... -+|.++|+|+.+++.|++-.-...... .
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 467999999999984 444442111 158899999999999985432111000 0
Q ss_pred ------CCCcceEEEEcCCCCCC-CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 209 ------DMHKATNFFCVPLQDFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 209 ------~~~~~v~f~~~d~~~~~-~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.....+.|...+..+.. +..++||+|+|.++|.|++++...++++++.+.|+||
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pG 164 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD 164 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCC
Confidence 00012345555554432 2347899999999999999998889999999999997
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=2.2e-09 Score=88.64 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=69.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI~ 235 (262)
.+.+|||++||+|.++...+.+...+|+.||.++.+++.+++++... ...+..+++.|+.++. ....+||+|+
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~------~~~~~~ii~~d~~~~l~~~~~~fDlIf 116 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL------KAGNARVVNSNAMSFLAQKGTPHNIVF 116 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT------TCCSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhc------cccceeeeeecccccccccccccCEEE
Confidence 36799999999999999988666778999999999999999998642 2346788999887662 2346899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHh
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKV 257 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~ 257 (262)
+..+...- ....++..+.+
T Consensus 117 ~DPPY~~~---~~~~~l~~l~~ 135 (183)
T d2fpoa1 117 VDPPFRRG---LLEETINLLED 135 (183)
T ss_dssp ECCSSSTT---THHHHHHHHHH
T ss_pred EcCccccc---hHHHHHHHHHH
Confidence 99875432 22245555543
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.73 E-value=5.2e-09 Score=90.03 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=64.0
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||||||+|.+|..|+ +.+.+|++||.++.+++.++++... ..++.++++|+.+++.+......|
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll-~~~~~v~avE~D~~l~~~l~~~~~~--------~~n~~i~~~D~l~~~~~~~~~~~v 89 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELV-QRCNFVTAIEIDHKLCKTTENKLVD--------HDNFQVLNKDILQFKFPKNQSYKI 89 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH-HHSSEEEEECSCHHHHHHHHHHTTT--------CCSEEEECCCGGGCCCCSSCCCEE
T ss_pred CCCCCeEEEECCCchHHHHHHH-hCcCceEEEeeccchHHHHHHHhhc--------ccchhhhhhhhhhcccccccccee
Confidence 4568899999999999999999 6688999999999999999998642 358999999999886543333445
Q ss_pred hhhhHHhhcCc
Q 024811 235 WVQWCIGHLTD 245 (262)
Q Consensus 235 ~s~~vl~hltD 245 (262)
++|.+ .+++.
T Consensus 90 v~NLP-YnIss 99 (235)
T d1qama_ 90 FGNIP-YNIST 99 (235)
T ss_dssp EEECC-GGGHH
T ss_pred eeeeh-hhhhH
Confidence 66654 24443
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.67 E-value=9.1e-10 Score=95.49 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=71.2
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..+..+|||||||+|.+|..|+ +.+.+|++||.++.+++.+++++.. ..+++++++|+.+++.+...++.|
T Consensus 27 ~~~~d~VLEIGpG~G~LT~~L~-~~~~~v~aIE~D~~l~~~l~~~~~~--------~~n~~ii~~D~l~~~~~~~~~~~v 97 (245)
T d1yuba_ 27 LKETDTVYEIGTGKGHLTTKLA-KISKQVTSIELDSHLFNLSSEKLKL--------NTRVTLIHQDILQFQFPNKQRYKI 97 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHH-HHSSEEEESSSSCSSSSSSSCTTTT--------CSEEEECCSCCTTTTCCCSSEEEE
T ss_pred CCCCCeEEEECCCccHHHHHHH-hhcCceeEeeecccchhhhhhhhhh--------ccchhhhhhhhhccccccceeeeE
Confidence 3467899999999999999999 6688999999999999988887642 358999999999988766677778
Q ss_pred hhhhHHhhcCchhHHHHH
Q 024811 235 WVQWCIGHLTDDDFVSFF 252 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l 252 (262)
+++.+ .|++.+=+..++
T Consensus 98 v~NLP-Y~Ist~il~~~l 114 (245)
T d1yuba_ 98 VGNIP-YHLSTQIIKKVV 114 (245)
T ss_dssp EEECC-SSSCHHHHHHHH
T ss_pred eeeee-hhhhHHHHHHHh
Confidence 88876 577765444444
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.63 E-value=8.9e-09 Score=88.44 Aligned_cols=88 Identities=11% Similarity=0.220 Sum_probs=69.7
Q ss_pred CceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
..+|||||||+|.++..|+ +.++ +++++|..+. + +.+ ....++.+...|+.+-.| ..|+++
T Consensus 82 ~~~vvDvGGG~G~~~~~l~-~~~P~l~~~v~Dlp~v-i-------~~~-----~~~~r~~~~~~d~~~~~P---~ad~~~ 144 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIV-SKYPTIKGINFDLPHV-I-------EDA-----PSYPGVEHVGGDMFVSIP---KADAVF 144 (243)
T ss_dssp CSEEEEETCTTSHHHHHHH-HHCTTSEEEEEECTTT-T-------TTC-----CCCTTEEEEECCTTTCCC---CCSCEE
T ss_pred CcEEEEecCCCcHHHHHHH-HHCCCCeEEEcccHHh-h-------hhc-----ccCCceEEecccccccCC---CcceEE
Confidence 5689999999999999999 5555 5777887542 2 111 123578999999976433 367788
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+++|+.+|++.+.+|++++++|+||
T Consensus 145 l~~vlh~~~d~~~~~iL~~~~~al~pg 171 (243)
T d1kyza2 145 MKWICHDWSDEHCLKFLKNCYEALPDN 171 (243)
T ss_dssp CSSSSTTSCHHHHHHHHHHHHHHCCSS
T ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999999997
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=3.3e-08 Score=85.43 Aligned_cols=81 Identities=14% Similarity=0.024 Sum_probs=61.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC------CCCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PETG 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~------~~~~ 229 (262)
+..++||+|||+|-++..|+.+. .-+|+++|.|+.+++.|++++..- ....++.++..+..+.. ...+
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n-----~l~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-----NLSDLIKVVKVPQKTLLMDALKEESEI 135 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHh-----CCCcceeeeeeccHHhhhhhhhhcccC
Confidence 35689999999999999999554 458999999999999999998642 12345677766554432 1235
Q ss_pred ccchhhhhhHHhh
Q 024811 230 RYDVIWVQWCIGH 242 (262)
Q Consensus 230 ~yDlI~s~~vl~h 242 (262)
+||+|+||.+++.
T Consensus 136 ~fD~ivsNPPY~~ 148 (250)
T d2h00a1 136 IYDFCMCNPPFFA 148 (250)
T ss_dssp CBSEEEECCCCC-
T ss_pred ceeEEEecCcccc
Confidence 8999999987554
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.54 E-value=8.2e-08 Score=84.08 Aligned_cols=77 Identities=14% Similarity=-0.013 Sum_probs=61.3
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~s 236 (262)
..++||+|||+|-++..++.....+|+++|.|+.+++.|++|+.... ...++.++.+|+.+..+. .++||+|+|
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~-----~~~~~~i~~~~~~~~~~~~~~~fDlIVs 185 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHG-----VSDRFFVRKGEFLEPFKEKFASIEMILS 185 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTT-----CTTSEEEEESSTTGGGGGGTTTCCEEEE
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcC-----CCceeEEeecccccccccccCcccEEEE
Confidence 45899999999999999985545689999999999999999986421 223567888998875432 268999999
Q ss_pred hhH
Q 024811 237 QWC 239 (262)
Q Consensus 237 ~~v 239 (262)
|.+
T Consensus 186 NPP 188 (271)
T d1nv8a_ 186 NPP 188 (271)
T ss_dssp CCC
T ss_pred ccc
Confidence 964
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.50 E-value=1.9e-08 Score=88.20 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=75.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccccccc----CCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM----APDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~----~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
++.+||-||+|.|..+..+++....+|++||+++.+++.|++.+...... .....++++++..|...+-...++||
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yD 151 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD 151 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCC
Confidence 56799999999999999999544568999999999999999877432110 01134678999999877643346899
Q ss_pred hhhhhhH-----HhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWC-----IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~v-----l~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++-.. ..+|-. .+|++.|++.|+||
T Consensus 152 vIi~D~~~~~~~~~~L~t---~eF~~~~~~~L~~~ 183 (276)
T d1mjfa_ 152 VIIADSTDPVGPAKVLFS---EEFYRYVYDALNNP 183 (276)
T ss_dssp EEEEECCCCC-----TTS---HHHHHHHHHHEEEE
T ss_pred EEEEeCCCCCCCcccccC---HHHHHhhHhhcCCC
Confidence 9997432 122222 36999999999985
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.48 E-value=4.4e-08 Score=80.67 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=71.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----CCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~----~~~~~yD 232 (262)
.+.+|||+.||+|.++...+.+....|++||.++.+++.+++++.... ...++.++++|..++- ....+||
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~-----~~~~~~i~~~D~~~~l~~~~~~~~~fD 115 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK-----EPEKFEVRKMDANRALEQFYEEKLQFD 115 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT-----CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhh-----cccccccccccchhhhhhhcccCCCcc
Confidence 478999999999999999996666789999999999999999986432 2347889999987642 1235899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHh--hccC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKV--NHSQ 261 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~--~LkP 261 (262)
+|++..+... . +....+..+.. .|+|
T Consensus 116 lIflDPPY~~-~--~~~~~l~~i~~~~~L~~ 143 (182)
T d2fhpa1 116 LVLLDPPYAK-Q--EIVSQLEKMLERQLLTN 143 (182)
T ss_dssp EEEECCCGGG-C--CHHHHHHHHHHTTCEEE
T ss_pred eEEechhhhh-h--HHHHHHHHHHHCCCCCC
Confidence 9999877432 2 22355555543 4554
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.48 E-value=3.1e-08 Score=88.56 Aligned_cols=102 Identities=8% Similarity=0.015 Sum_probs=75.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----CCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~----~~~~~yD 232 (262)
++.+|||+.||+|.++..++.....+|+.||.|+.+++.|++|+..-. ....+++|+++|+.++- ....+||
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~----l~~~~~~~i~~d~~~~l~~~~~~~~~fD 219 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANH----LDMANHQLVVMDVFDYFKYARRHHLTYD 219 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTT----CCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhc----ccCcceEEEEccHHHHHHHHHhhcCCCC
Confidence 477999999999999999884445689999999999999999985321 11247899999997652 1235899
Q ss_pred hhhhhhH-H----hhcCc--hhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWC-I----GHLTD--DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~v-l----~hltD--~el~~~l~~~~~~LkPG 262 (262)
+|++..+ + ..+.+ .+..++++.+.++|+||
T Consensus 220 ~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg 256 (317)
T d2b78a2 220 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN 256 (317)
T ss_dssp EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE
T ss_pred EEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9998643 1 11111 13446888888999886
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=2.9e-07 Score=82.22 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=63.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC----CCcc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TGRY 231 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~----~~~y 231 (262)
.++.+|||+-||+|.+|..|+ +.+.+|.+||.++.+++.|++++... ...++.|+.++.++.... ...|
T Consensus 211 ~~~~~vlDLycG~G~fsl~La-~~~~~V~gvE~~~~ai~~A~~na~~n------~i~n~~~~~~~~~~~~~~~~~~~~~~ 283 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLA-TQAASVVGVEGVPALVEKGQQNARLN------GLQNVTFYHENLEEDVTKQPWAKNGF 283 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHH-TTSSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCTTSCCSSSGGGTTCC
T ss_pred CCCceEEEecccccccchhcc-ccccEEEeccCcHHHHHHHHHhHHhc------ccccceeeecchhhhhhhhhhhhccC
Confidence 356799999999999999999 77899999999999999999997542 456899999998875321 2568
Q ss_pred chhhhhh
Q 024811 232 DVIWVQW 238 (262)
Q Consensus 232 DlI~s~~ 238 (262)
|+|+...
T Consensus 284 d~vilDP 290 (358)
T d1uwva2 284 DKVLLDP 290 (358)
T ss_dssp SEEEECC
T ss_pred ceEEeCC
Confidence 9988764
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.41 E-value=6.1e-08 Score=80.76 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=71.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-----CCCC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG 229 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-----~~~~ 229 (262)
.++..+||++||+|..|..++... ..+|.++|.++.|++.|++++... ..++.++.+++.++. ...+
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-------~~r~~~~~~~f~~~~~~~~~~~~~ 94 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------SDRVSLFKVSYREADFLLKTLGIE 94 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-------TTTEEEEECCGGGHHHHHHHTTCS
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-------cccccchhHHHhhHHHHHHHcCCC
Confidence 467899999999999999999553 357999999999999999998642 346889998876642 1235
Q ss_pred ccchhhhhh--HHhhcCch-----hHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQW--CIGHLTDD-----DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~--vl~hltD~-----el~~~l~~~~~~LkPG 262 (262)
+||.|+.-. +-+++.++ .+..+|..+.++|+||
T Consensus 95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g 134 (192)
T d1m6ya2 95 KVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG 134 (192)
T ss_dssp CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE
T ss_pred CcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC
Confidence 778775432 12333322 1235777777777765
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.39 E-value=1.2e-07 Score=80.01 Aligned_cols=107 Identities=9% Similarity=0.136 Sum_probs=76.3
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEE
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~ 217 (262)
.+|..++... ++.+|||+|||+|..|..|+... ..+|+.+|.++.+++.|++++..+. ...+++++
T Consensus 46 ~lL~~lv~~~-------kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g-----l~~~i~l~ 113 (214)
T d2cl5a1 46 QIMDAVIREY-------SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG-----LQDKVTIL 113 (214)
T ss_dssp HHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT-----CGGGEEEE
T ss_pred HHHHHHHHhh-------CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC-----CCccceee
Confidence 4666666532 46799999999999999999432 3579999999999999999987642 23579999
Q ss_pred EcCCCCCCC------CCCccchhhhhhHHhhcCchhHH-HHHHHHHhhccCC
Q 024811 218 CVPLQDFTP------ETGRYDVIWVQWCIGHLTDDDFV-SFFKRAKVNHSQT 262 (262)
Q Consensus 218 ~~d~~~~~~------~~~~yDlI~s~~vl~hltD~el~-~~l~~~~~~LkPG 262 (262)
.+|..+.-+ ..++||+|++-. -.+.... ..+.++.+.|+||
T Consensus 114 ~Gd~~e~l~~l~~~~~~~~~D~ifiD~----~~~~~~~~~~l~~~~~lLkpG 161 (214)
T d2cl5a1 114 NGASQDLIPQLKKKYDVDTLDMVFLDH----WKDRYLPDTLLLEKCGLLRKG 161 (214)
T ss_dssp ESCHHHHGGGHHHHSCCCCEEEEEECS----CGGGHHHHHHHHHHTTCEEEE
T ss_pred eccccccccchhhcccccccceeeecc----cccccccHHHHHHHhCccCCC
Confidence 999876522 225799998752 1221111 3466677788886
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.35 E-value=7.7e-08 Score=85.79 Aligned_cols=102 Identities=14% Similarity=0.195 Sum_probs=74.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI 234 (262)
.+.+||.||.|.|.++..+++.. ..+|++||+++.+++.|++.+...... ....++++++.+|..++- ....+||+|
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~-~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQG-AFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTT-GGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccC-ccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 46799999999999999999332 458999999999999999987432110 012457899999998862 123689999
Q ss_pred hhhhH--------HhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWC--------IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~v--------l~hltD~el~~~l~~~~~~LkPG 262 (262)
++-.. ..++-. .+|++.|++.|+||
T Consensus 156 i~D~~dp~~~~~~~~~L~t---~eF~~~~~~~L~p~ 188 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYT---VEFYRLVKAHLNPG 188 (312)
T ss_dssp EEECCCCBSTTCGGGGGSS---HHHHHHHHHTEEEE
T ss_pred EEeCCCcccccchhhhhhh---HHHHHHHHHhcCCC
Confidence 96431 112222 26999999999986
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=5.2e-07 Score=79.13 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=62.4
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++..|||||+|+|.+|..|+ +.+.+|++||.++.+++..++.+... ....+++++.+|+..++.+ .++.|
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll-~~~~~v~aiE~D~~l~~~L~~~~~~~-----~~~~~~~~i~~D~l~~~~~--~~~~v 90 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLL-EKAKKVVACELDPRLVAELHKRVQGT-----PVASKLQVLVGDVLKTDLP--FFDTC 90 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHH-HHSSEEEEEESCHHHHHHHHHHHTTS-----TTGGGEEEEESCTTTSCCC--CCSEE
T ss_pred CCCCCEEEEECCCchHHHHHHH-hcCCcEEEEEEccchhHHHHHHHhhh-----ccccchhhhHHHHhhhhhh--hhhhh
Confidence 3457899999999999999999 56789999999999999999987532 1235799999999988754 35667
Q ss_pred hhhhH
Q 024811 235 WVQWC 239 (262)
Q Consensus 235 ~s~~v 239 (262)
|+|.+
T Consensus 91 V~NLP 95 (278)
T d1zq9a1 91 VANLP 95 (278)
T ss_dssp EEECC
T ss_pred hcchH
Confidence 77754
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=5.8e-07 Score=76.06 Aligned_cols=96 Identities=18% Similarity=0.143 Sum_probs=72.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC------CCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET 228 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~------~~~ 228 (262)
+..+|||+|||+|.-|..++... ..+|+.+|.++...+.|++++..+. ...+++++.+|..+.- ...
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag-----~~~~i~~~~Gda~e~l~~~~~~~~~ 133 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-----AEHKIDLRLKPALETLDELLAAGEA 133 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-----CTTTEEEEESCHHHHHHHHHHTTCT
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC-----ccceEEEEEeehhhcchhhhhhccc
Confidence 46799999999999999999432 3489999999999999999997652 2357899999875531 123
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++||+|+... ........+..+.+.|+||
T Consensus 134 ~~fD~ifiD~-----dk~~y~~~~~~~~~lL~~G 162 (219)
T d2avda1 134 GTFDVAVVDA-----DKENCSAYYERCLQLLRPG 162 (219)
T ss_dssp TCEEEEEECS-----CSTTHHHHHHHHHHHEEEE
T ss_pred CCccEEEEeC-----CHHHHHHHHHHHHHHhcCC
Confidence 6899998752 1122345777888888886
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.16 E-value=7.4e-07 Score=78.67 Aligned_cols=98 Identities=10% Similarity=0.082 Sum_probs=71.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc----C--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY----F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~----~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~ 230 (262)
++.+|||.+||+|.+...+..+. . .++.++|.++.++..|+.++... .....+.+.|.....+. .+
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~-~~ 188 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-------RQKMTLLHQDGLANLLV-DP 188 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-------TCCCEEEESCTTSCCCC-CC
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh-------hhhhhhhcccccccccc-cc
Confidence 46789999999999998887332 1 25889999999999999886542 23456777777665443 68
Q ss_pred cchhhhhhHHhhcCchh----------------HHHHHHHHHhhccCC
Q 024811 231 YDVIWVQWCIGHLTDDD----------------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~vl~hltD~e----------------l~~~l~~~~~~LkPG 262 (262)
||+|+++.++......+ -..|+..+.+.|+||
T Consensus 189 fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~ 236 (328)
T d2f8la1 189 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPG 236 (328)
T ss_dssp EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEE
T ss_pred ccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCC
Confidence 99999998765433222 113788888888875
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=1.1e-06 Score=75.95 Aligned_cols=62 Identities=8% Similarity=0.156 Sum_probs=53.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~ 226 (262)
.++..|||||||+|.+|..|+ +.+.+|++||.++.+++..+++.. ...++.++.+|+.+++.
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll-~~~~~v~aiEiD~~l~~~L~~~~~--------~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVG-ERLDQLTVIELDRDLAARLQTHPF--------LGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHH-TTCSCEEEECCCHHHHHHHHTCTT--------TGGGEEEECSCGGGCCH
T ss_pred CCCCEEEEECCCchHHHHHHH-ccCCceEEEEeccchhHHHHHHhh--------hccchhHHhhhhhhhcc
Confidence 357799999999999999999 778899999999999999988653 23589999999988754
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.12 E-value=7.2e-07 Score=78.85 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=74.1
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
.+.+||=||.|.|.++..+++.. ..+|++||+++.+++.|++.+..... .-..++++++..|..++-. ..++||+|
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~--~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC--GFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcc--cccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 46799999999999999999432 46899999999999999998743211 0124578999999877632 23689999
Q ss_pred hhhhH------HhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWC------IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~v------l~hltD~el~~~l~~~~~~LkPG 262 (262)
++-.. ..+|-.. +|++.|++.|+||
T Consensus 167 i~D~~dp~~~~~~~L~t~---efy~~~~~~L~~~ 197 (295)
T d1inla_ 167 IIDSTDPTAGQGGHLFTE---EFYQACYDALKED 197 (295)
T ss_dssp EEEC----------CCSH---HHHHHHHHHEEEE
T ss_pred EEcCCCCCcCchhhhccH---HHHHHHHhhcCCC
Confidence 97532 2333333 6999999999985
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.07 E-value=2.2e-06 Score=72.85 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=78.7
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEE
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~ 217 (262)
.||..++.. .+..+|||+|+++|.-|..++... ..+|+.+|.+++..+.|++++..+. ...+++++
T Consensus 49 ~~L~~L~~~-------~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g-----~~~~i~~~ 116 (227)
T d1susa1 49 QFLSMLLKL-------INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-----VDHKIDFR 116 (227)
T ss_dssp HHHHHHHHH-------HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT-----CGGGEEEE
T ss_pred HHHHHHHHh-------cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc-----cccceeee
Confidence 456655542 146799999999999999999443 3479999999999999999997652 23579999
Q ss_pred EcCCCCCCC-------CCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 218 CVPLQDFTP-------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 218 ~~d~~~~~~-------~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++..+.-+ ..++||+|+.-. .......++..+.+.|+||
T Consensus 117 ~g~a~~~L~~l~~~~~~~~~fD~iFiDa-----~k~~y~~~~e~~~~ll~~g 163 (227)
T d1susa1 117 EGPALPVLDEMIKDEKNHGSYDFIFVDA-----DKDNYLNYHKRLIDLVKVG 163 (227)
T ss_dssp ESCHHHHHHHHHHCGGGTTCBSEEEECS-----CSTTHHHHHHHHHHHBCTT
T ss_pred ehHHHHHHHHHHhccccCCceeEEEecc-----chhhhHHHHHHHHhhcCCC
Confidence 999876521 135899998752 1122346888888999987
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.04 E-value=8.2e-07 Score=79.06 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=72.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDl 233 (262)
.+.+||-||.|.|.++..++ ++. .+|++||+++.+++.|++.+..... .-..++++++..|...+- ....+||+
T Consensus 106 ~pk~VLIiGgG~G~~~rell-k~~~v~~v~~VEID~~Vv~~a~~~~~~~~~--~~~dprv~i~i~Da~~~l~~~~~~yDv 182 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVL-KHESVEKVTMCEIDEMVIDVAKKFLPGMSC--GFSHPKLDLFCGDGFEFLKNHKNEFDV 182 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHT-TCTTCCEEEEECSCHHHHHHHHHHCTTTSG--GGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred CCCeEEEeCCCchHHHHHHH-HcCCcceEEEEcccHHHHHHHHhhchhhcc--ccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence 46799999999999999999 543 6899999999999999998753211 012467899988887762 12368999
Q ss_pred hhhhhHHhhcCchhH--HHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDF--VSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el--~~~l~~~~~~LkPG 262 (262)
|++-..-..-....+ .+|++.|++.|+||
T Consensus 183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~ 213 (312)
T d2b2ca1 183 IITDSSDPVGPAESLFGQSYYELLRDALKED 213 (312)
T ss_dssp EEECCC-------------HHHHHHHHEEEE
T ss_pred EEEcCCCCCCcchhhhhHHHHHHHHhhcCCC
Confidence 997532111111111 26999999999985
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.03 E-value=1.4e-06 Score=76.16 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=75.2
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI 234 (262)
.+.+||-||.|.|..+..+++.. ..+|++||+++.+++.|++.+..... ....++++++..|...+- ....+||+|
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~--~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAG--KLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHT--TTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcc--cccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 46799999999999999999432 46899999999999999998753211 123468899999987752 123689999
Q ss_pred hhhhH-----HhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWC-----IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~v-----l~hltD~el~~~l~~~~~~LkPG 262 (262)
++-.. -.+|-.. +|++.|++.|+||
T Consensus 153 i~D~~~p~~~~~~L~t~---eFy~~~~~~L~~~ 182 (274)
T d1iy9a_ 153 MVDSTEPVGPAVNLFTK---GFYAGIAKALKED 182 (274)
T ss_dssp EESCSSCCSCCCCCSTT---HHHHHHHHHEEEE
T ss_pred EEcCCCCCCcchhhccH---HHHHHHHhhcCCC
Confidence 97532 1223222 6999999999985
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.4e-06 Score=76.43 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=73.2
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI 234 (262)
.+.+||=||.|.|..+..+++.. ..+|++||+++.+++.|++.+...... -..++++++..|...+- ...++||+|
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~--~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIG--YSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG--GGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccc--cCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 56799999999999999999332 568999999999999999987531110 12468899999987662 223689999
Q ss_pred hhhhH-----HhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWC-----IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~v-----l~hltD~el~~~l~~~~~~LkPG 262 (262)
++-.. ..++... +|++.|++.|+||
T Consensus 156 i~D~~~p~~~~~~L~t~---eF~~~~~~~L~~~ 185 (285)
T d2o07a1 156 ITDSSDPMGPAESLFKE---SYYQLMKTALKED 185 (285)
T ss_dssp EEECC-----------C---HHHHHHHHHEEEE
T ss_pred EEcCCCCCCcccccccH---HHHHHHHHhcCCC
Confidence 97531 2233322 5999999999985
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.02 E-value=1.8e-06 Score=75.98 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=74.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yD 232 (262)
.+.+||=||.|.|.+...++ ++. .+|++||+++.+++.|++.+...... ...++++++..|..++- ...++||
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l-~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~--~~~~r~~i~~~Da~~~l~~~~~~~yD 156 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVA-RHASIEQIDMCEIDKMVVDVSKQFFPDVAIG--YEDPRVNLVIGDGVAFLKNAAEGSYD 156 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHT-TCTTCCEEEEEESCHHHHHHHHHHCHHHHGG--GGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCcceEEecCCchHHHHHHH-hcccceeeEEecCCHHHHHHHHHhchhhhcc--ccCCCcEEEEccHHHHHhhccccCcc
Confidence 56799999999999999999 543 58999999999999999987432110 12467899999876653 2235899
Q ss_pred hhhhhhH-----HhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWC-----IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~v-----l~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++-.. -.+|-.. +|++.|++.|+||
T Consensus 157 vIi~D~~dp~~~~~~L~t~---eF~~~~~~~L~~~ 188 (290)
T d1xj5a_ 157 AVIVDSSDPIGPAKELFEK---PFFQSVARALRPG 188 (290)
T ss_dssp EEEECCCCTTSGGGGGGSH---HHHHHHHHHEEEE
T ss_pred EEEEcCCCCCCcchhhCCH---HHHHHHHHhcCCC
Confidence 9996421 2233322 6999999999985
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.00 E-value=1.1e-06 Score=71.80 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=68.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC---CCCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~---~~~~~~yDl 233 (262)
.+.+|||+-||||.++.+.+.+...+|+.||.+...++..+++++.... ......+++.|..++ .....+||+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~----~~~~~~~~~~d~~~~l~~~~~~~~fDl 118 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKC----SSEQAEVINQSSLDFLKQPQNQPHFDV 118 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC----CTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcc----cccccccccccccccccccccCCcccE
Confidence 3679999999999999999977677999999999999999999865321 122455666654332 222357999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHh--hccC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKV--NHSQ 261 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~--~LkP 261 (262)
|++-.+... .. ....+..+.. +|++
T Consensus 119 IFlDPPY~~-~~--~~~~l~~l~~~~~L~~ 145 (183)
T d2ifta1 119 VFLDPPFHF-NL--AEQAISLLCENNWLKP 145 (183)
T ss_dssp EEECCCSSS-CH--HHHHHHHHHHTTCEEE
T ss_pred EEechhHhh-hh--HHHHHHHHHHhCCcCC
Confidence 999887543 21 2245555543 3544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=1.9e-05 Score=66.01 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=82.2
Q ss_pred hhHhHhhHHhhhhccchhhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc-C
Q 024811 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-F 180 (262)
Q Consensus 102 ~~~wy~~~~~yW~~~~~~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~-~ 180 (262)
+..-|..-..-|++...... ..+.+---.+.+++++..-.+ -++.+|+|+|+|.|--+..|+.-. -
T Consensus 23 ~L~~y~~ll~~~N~~~NLts--------~~~~~~~~~rHi~DSl~~~~~-----~~~~~ilDiGsGaG~PGi~laI~~p~ 89 (207)
T d1jsxa_ 23 QLIAYVNMLHKWNKAYNLTS--------VRDPNEMLVRHILDSIVVAPY-----LQGERFIDVGTGPGLPGIPLSIVRPE 89 (207)
T ss_dssp HHHHHHHHHHHHC--------------------CHHHHHHHHHHHHGGG-----CCSSEEEEETCTTTTTHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCceeeEE--------CCCHHHHHHHHhcchHhhhhh-----hcCCceeeeeccCCceeeehhhhccc
Confidence 34445566666765543221 111111123556665543211 135689999999999999999543 2
Q ss_pred CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhcc
Q 024811 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHS 260 (262)
Q Consensus 181 ~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~Lk 260 (262)
.+|+++|.+..=+...++..... ...++.+++..++++.+. .+||+|+|..+ .+.+ .++.-+...++
T Consensus 90 ~~~~Lves~~KK~~FL~~~~~~L------~L~nv~v~~~R~E~~~~~-~~fD~V~sRA~----~~~~--~ll~~~~~~l~ 156 (207)
T d1jsxa_ 90 AHFTLLDSLGKRVRFLRQVQHEL------KLENIEPVQSRVEEFPSE-PPFDGVISRAF----ASLN--DMVSWCHHLPG 156 (207)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHT------TCSSEEEEECCTTTSCCC-SCEEEEECSCS----SSHH--HHHHHHTTSEE
T ss_pred ceEEEEecchHHHHHHHHHHHHc------CCcceeeeccchhhhccc-cccceehhhhh----cCHH--HHHHHHHHhcC
Confidence 47999999999888777765432 245899999999998654 58999998643 2222 55555555554
Q ss_pred C
Q 024811 261 Q 261 (262)
Q Consensus 261 P 261 (262)
+
T Consensus 157 ~ 157 (207)
T d1jsxa_ 157 E 157 (207)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.88 E-value=2.2e-06 Score=70.44 Aligned_cols=69 Identities=13% Similarity=-0.008 Sum_probs=51.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||.|||+|.+...+..... ..+.++|.++..+..+ ....++++|.....+. ..||+|
T Consensus 19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------------~~~~~~~~~~~~~~~~-~~fd~i 82 (223)
T d2ih2a1 19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILADFLLWEPG-EAFDLI 82 (223)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEESCGGGCCCS-SCEEEE
T ss_pred CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------------ccceeeeeehhccccc-ccccee
Confidence 578999999999999988885443 4599999987654322 2346777887776554 689999
Q ss_pred hhhhHHh
Q 024811 235 WVQWCIG 241 (262)
Q Consensus 235 ~s~~vl~ 241 (262)
+++..+.
T Consensus 83 i~npP~~ 89 (223)
T d2ih2a1 83 LGNPPYG 89 (223)
T ss_dssp EECCCCC
T ss_pred cccCccc
Confidence 9987643
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.34 E-value=0.0003 Score=60.21 Aligned_cols=107 Identities=12% Similarity=0.003 Sum_probs=58.2
Q ss_pred HHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcC
Q 024811 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (262)
Q Consensus 142 L~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d 220 (262)
|..+..+.+ ..+..+|+|+|||+|..+..++.+. ...|.+++. +++...+-+.. .......+++...+
T Consensus 55 l~~~~~~~~----~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i---G~d~~e~P~~~----~~~~~ni~~~~~~~ 123 (257)
T d2p41a1 55 LRWFVERNL----VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK---GGPGHEEPIPM----STYGWNLVRLQSGV 123 (257)
T ss_dssp HHHHHHTTS----SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC---CSTTSCCCCCC----CSTTGGGEEEECSC
T ss_pred HHHHHHhcC----ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe---cCccccCCccc----cccccccccchhhh
Confidence 445544332 4567899999999999999999332 235666655 22211110000 01122344555333
Q ss_pred -CCCCCCCCCccchhhhhhHHhhcCchh-----HHHHHHHHHhhccCC
Q 024811 221 -LQDFTPETGRYDVIWVQWCIGHLTDDD-----FVSFFKRAKVNHSQT 262 (262)
Q Consensus 221 -~~~~~~~~~~yDlI~s~~vl~hltD~e-----l~~~l~~~~~~LkPG 262 (262)
+..+ + +++.|+|+|-.+- .-++++ -.++|.-+.+.|+||
T Consensus 124 dv~~l-~-~~~~D~vlcDm~e-ss~~~~vd~~Rtl~vLela~~wLk~g 168 (257)
T d2p41a1 124 DVFFI-P-PERCDTLLCDIGE-SSPNPTVEAGRTLRVLNLVENWLSNN 168 (257)
T ss_dssp CTTTS-C-CCCCSEEEECCCC-CCSSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred hHHhc-C-CCcCCEEEeeCCC-CCCCchhhhhhHHHHHHHHHHHcccC
Confidence 3333 2 3689999987431 122221 124677777888886
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.26 E-value=0.0001 Score=67.07 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=72.4
Q ss_pred CCceeeEeeccccHHHHHHHHhc--------------CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--------------~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~ 222 (262)
.+.+|+|-.||+|.+...+.... ...+.++|.++.+...|+-++..... .....++.+.|..
T Consensus 162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~----~~~~~~i~~~d~l 237 (425)
T d2okca1 162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI----GTDRSPIVCEDSL 237 (425)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC----CSSCCSEEECCTT
T ss_pred ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC----ccccceeecCchh
Confidence 46799999999999998877322 12489999999999999987643211 1234567788887
Q ss_pred CCCCCCCccchhhhhhHHhhcCchh---------------HHHHHHHHHhhccCC
Q 024811 223 DFTPETGRYDVIWVQWCIGHLTDDD---------------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 223 ~~~~~~~~yDlI~s~~vl~hltD~e---------------l~~~l~~~~~~LkPG 262 (262)
+..+. .+||+|+++.+++.-.... -..|+.++...|+||
T Consensus 238 ~~~~~-~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~ 291 (425)
T d2okca1 238 EKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG 291 (425)
T ss_dssp TSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred hhhcc-cccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCC
Confidence 76544 6899999998874322111 124999999999875
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.21 E-value=0.00034 Score=59.40 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=64.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC---CCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~---~~~yD 232 (262)
...+++|+|+|.|--+..|+.-. ..+|+++|.+..=+...+.-.... ...++.+++..++++... .++||
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L------~L~n~~i~~~R~E~~~~~~~~~~~~D 143 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL------QLENTTFCHDRAETFGQRKDVRESYD 143 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH------TCSSEEEEESCHHHHTTCTTTTTCEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh------CCCCcEEEeehhhhccccccccccce
Confidence 35689999999999999999432 357999999998777665544332 235788889888776432 25899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
+|+|.-+ .+.. .++.-+...+++
T Consensus 144 ~v~sRAv----a~l~--~ll~~~~~~l~~ 166 (239)
T d1xdza_ 144 IVTARAV----ARLS--VLSELCLPLVKK 166 (239)
T ss_dssp EEEEECC----SCHH--HHHHHHGGGEEE
T ss_pred EEEEhhh----hCHH--HHHHHHhhhccc
Confidence 9998732 2222 455555555544
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.19 E-value=0.00018 Score=58.60 Aligned_cols=96 Identities=16% Similarity=0.058 Sum_probs=67.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-----CCCCc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETGR 230 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-----~~~~~ 230 (262)
.+++.++|+.+|.|..|..++. ...+|.++|..+.+++.|++.. .+++.+++..+.++. ...+.
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~-~~~~viaiD~D~~ai~~a~~~~----------~~~~~~~~~~f~~~~~~l~~~~~~~ 85 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILE-RGGRVIGLDQDPEAVARAKGLH----------LPGLTVVQGNFRHLKRHLAALGVER 85 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHTC----------CTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred CCCCEEEEeCCCCcHHHHHHhc-ccCcEEEEhhhhhHHHHHhhcc----------ccceeEeehHHHHHHHHHHHcCCCc
Confidence 4688999999999999999994 5678999999999999998753 246888888776652 12256
Q ss_pred cchhhhhh--HHhhcCchh-----HHHHHHHHHhhccCC
Q 024811 231 YDVIWVQW--CIGHLTDDD-----FVSFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~--vl~hltD~e-----l~~~l~~~~~~LkPG 262 (262)
+|.|+.-. +.+|+.+++ +...|......|+||
T Consensus 86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~g 124 (182)
T d1wg8a2 86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG 124 (182)
T ss_dssp EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE
T ss_pred cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCC
Confidence 78777643 344554432 223555556666653
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.99 E-value=0.00056 Score=60.22 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=48.5
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
....|||||+|+|.+|..|+... ..+|.+||.++.+.+..++... ..++.++.+|+..+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~---------~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---------GSPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---------TSSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc---------CCCcEEEeCchhhc
Confidence 35689999999999999999443 3589999999999999998763 23678888888765
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.58 E-value=0.0004 Score=59.36 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=59.6
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCC---CCcceEEEEcCCCCCCC-CCCccchh
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPD---MHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~---~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
.+|||+=||.|+.+..|+ ..+.+|+++|-++.+....++.+..+...... ...+++++++|..++-. ....||+|
T Consensus 90 ~~VlD~TaGlG~Da~vlA-~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI 168 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLA-SVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_dssp CCEEETTCTTCHHHHHHH-HHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEECCCcccHHHHHHH-hCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence 489999999999999999 67889999999999887777666544221100 12478999999766532 23579999
Q ss_pred hhhhHH
Q 024811 235 WVQWCI 240 (262)
Q Consensus 235 ~s~~vl 240 (262)
+.-..+
T Consensus 169 YlDPMF 174 (250)
T d2oyra1 169 YLDPMF 174 (250)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 975544
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.0026 Score=55.00 Aligned_cols=76 Identities=12% Similarity=0.048 Sum_probs=59.6
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC---Cc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GR 230 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~---~~ 230 (262)
.++.+|||+.||+|.=|..|+... ...|.++|.++.-++..++++... ...++.+...|...+.+.. ++
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~------g~~~~~~~~~d~~~~~~~~~~~~~ 166 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA------GVSCCELAEEDFLAVSPSDPRYHE 166 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCGGGSCTTCGGGTT
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhc------Cccceeeeehhhhhhcccccccce
Confidence 368899999999999999888332 346999999999999999998764 3457888888887765432 57
Q ss_pred cchhhhh
Q 024811 231 YDVIWVQ 237 (262)
Q Consensus 231 yDlI~s~ 237 (262)
||.|+.-
T Consensus 167 fD~VL~D 173 (293)
T d2b9ea1 167 VHYILLD 173 (293)
T ss_dssp EEEEEEC
T ss_pred eeEEeec
Confidence 8998864
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.0013 Score=53.11 Aligned_cols=90 Identities=8% Similarity=0.058 Sum_probs=58.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-------
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~------- 226 (262)
.++.+|||+||++|..++.+++.. ...|.++|..+- . ...++.++.+|+.+...
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~--------~i~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------D--------PIVGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------C--------CCTTEEEEESCTTSHHHHHHHHHH
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------c--------ccCCceEeecccccchhhhhhhhh
Confidence 457799999999999999999543 346888886441 0 13467889999876421
Q ss_pred -CCCccchhhhhhH--------HhhcCchhHH-HHHHHHHhhccCC
Q 024811 227 -ETGRYDVIWVQWC--------IGHLTDDDFV-SFFKRAKVNHSQT 262 (262)
Q Consensus 227 -~~~~yDlI~s~~v--------l~hltD~el~-~~l~~~~~~LkPG 262 (262)
..+++|+|+|-.+ .-|..--++. ..+.-+.+.|++|
T Consensus 84 ~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~g 129 (180)
T d1ej0a_ 84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG 129 (180)
T ss_dssp HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred ccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCC
Confidence 1357999998543 2222222322 3556666666664
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.89 E-value=0.0061 Score=53.10 Aligned_cols=75 Identities=15% Similarity=0.046 Sum_probs=57.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+.||+|.=|..++..... .+.++|.++.-+...++++... ...++.+...|...+......||.
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~------~~~~i~~~~~d~~~~~~~~~~fD~ 188 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL------GVLNVILFHSSSLHIGELNVEFDK 188 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH------TCCSEEEESSCGGGGGGGCCCEEE
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHH------HhhccccccccccccccccccccE
Confidence 46889999999999999888844332 5899999999999999888654 234667777776665444468998
Q ss_pred hhh
Q 024811 234 IWV 236 (262)
Q Consensus 234 I~s 236 (262)
|++
T Consensus 189 ILv 191 (313)
T d1ixka_ 189 ILL 191 (313)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0019 Score=60.11 Aligned_cols=115 Identities=10% Similarity=-0.042 Sum_probs=70.4
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc-------------------CCcEEEEeCCHHHHHHHHhhc
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-------------------FNEVDLLEPVSHFLDAARESL 200 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~-------------------~~~V~~VD~s~~mld~Ar~~l 200 (262)
.++..++. ..++.+|+|-.||+|.+........ ...+.++|.++.+...|+-++
T Consensus 154 ~~mv~ll~-------~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl 226 (524)
T d2ar0a1 154 KTIIHLLK-------PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 226 (524)
T ss_dssp HHHHHHHC-------CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred Hhhhhccc-------CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 45555554 2346799999999999987765221 125899999999999998776
Q ss_pred ccccccCCCCCcceEEEEcCCCCCC-CCCCccchhhhhhHHhhcCchh------------HHHHHHHHHhhccCC
Q 024811 201 APENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIWVQWCIGHLTDDD------------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 201 ~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI~s~~vl~hltD~e------------l~~~l~~~~~~LkPG 262 (262)
-...... .......+...+...-+ ....+||+|++|.++.--.+.+ -..|+..+.+.|+||
T Consensus 227 ~l~~~~~-~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g 300 (524)
T d2ar0a1 227 LLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 300 (524)
T ss_dssp HTTTCCC-BGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred Hhhcccc-cccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc
Confidence 4321100 00012234444443221 1125799999998764322111 124999999999885
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.72 E-value=0.0022 Score=57.62 Aligned_cols=99 Identities=11% Similarity=0.008 Sum_probs=62.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhccccccc---------CCCCCcceEEEEcCCCCCCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHM---------APDMHKATNFFCVPLQDFTP 226 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~---------~~~~~~~v~f~~~d~~~~~~ 226 (262)
++.+|||..||+|-.+...+++. ...|+++|.|+..++.+++|+..-... .......+.+.+.|+..+-.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 36789999999999999877554 458999999999999999997531000 00011235555666543321
Q ss_pred -CCCccchhhhhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 227 -ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 227 -~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
....||+|..-. +..+- .||..+.+.++.
T Consensus 125 ~~~~~fDvIDiDP----fGs~~--pfldsAi~a~~~ 154 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSPM--EFLDTALRSAKR 154 (375)
T ss_dssp HSTTCEEEEEECC----SSCCH--HHHHHHHHHEEE
T ss_pred hhcCcCCcccCCC----CCCcH--HHHHHHHHHhcc
Confidence 124699887764 22222 466666555543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.42 E-value=0.006 Score=51.08 Aligned_cols=91 Identities=8% Similarity=-0.059 Sum_probs=57.0
Q ss_pred CCceeeEeeccccHHHHHHHH---hc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----C
Q 024811 157 QHLVALDCGSGIGRITKNLLI---RY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----E 227 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~---~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~ 227 (262)
++.+|||||++.|.-+..++. .. -.+|.++|+.+.....+.. ..++++++.+|..+... .
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~-----------~~~~I~~i~gDs~~~~~~~~l~ 148 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----------DMENITLHQGDCSDLTTFEHLR 148 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----------GCTTEEEEECCSSCSGGGGGGS
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc-----------cccceeeeecccccHHHHHHHH
Confidence 467899999999987776652 11 2479999987654322211 23579999998765422 1
Q ss_pred CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 228 ~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
...+|+|+.-.. |..+..+..+ .+...|+||
T Consensus 149 ~~~~dlIfID~~--H~~~~v~~~~--~~~~lLk~G 179 (232)
T d2bm8a1 149 EMAHPLIFIDNA--HANTFNIMKW--AVDHLLEEG 179 (232)
T ss_dssp SSCSSEEEEESS--CSSHHHHHHH--HHHHTCCTT
T ss_pred hcCCCEEEEcCC--cchHHHHHHH--HHhcccCcC
Confidence 235787776432 5455443333 356788887
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.027 Score=48.04 Aligned_cols=74 Identities=18% Similarity=0.038 Sum_probs=52.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yD 232 (262)
.++.+|||+.||+|.=|..|+ ... ..|+++|.++.-+...++++.... ..++.....|..... ...+.||
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la-~l~~~~~i~a~d~~~~R~~~l~~~~~r~g------~~~~~~~~~~~~~~~~~~~~~fd 173 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHIL-EVAPEAQVVAVDIDEQRLSRVYDNLKRLG------MKATVKQGDGRYPSQWCGEQQFD 173 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHH-HHCTTCEEEEEESSTTTHHHHHHHHHHTT------CCCEEEECCTTCTHHHHTTCCEE
T ss_pred cccceeEeccCccccchhhhh-hhhhhhhhhhhhcchhhhhhHhhhhhccc------ccceeeeccccccchhccccccc
Confidence 467899999999999999998 443 358999999999999999987542 223333333332211 1225789
Q ss_pred hhhh
Q 024811 233 VIWV 236 (262)
Q Consensus 233 lI~s 236 (262)
.|++
T Consensus 174 ~IL~ 177 (284)
T d1sqga2 174 RILL 177 (284)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.74 E-value=0.055 Score=41.83 Aligned_cols=45 Identities=16% Similarity=0.012 Sum_probs=39.5
Q ss_pred CCCCceeeEeecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhh
Q 024811 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 155 ~~~~~~VLDlGcG-tG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~ 199 (262)
.+++.+||-+|+| +|.++..+++..+.+|.++|.|++-++.|++.
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l 70 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM 70 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence 4568899999998 88899999877788999999999999999875
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=92.63 E-value=0.12 Score=42.93 Aligned_cols=46 Identities=11% Similarity=-0.036 Sum_probs=41.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~ 202 (262)
.++..|||.=||+|..+.... ..+-+..++|+++++++.|++++..
T Consensus 249 ~~gdiVlDpF~GSGTT~~AA~-~lgR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 249 EPDDLVVDIFGGSNTTGLVAE-RESRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CTTCEEEETTCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred cCCCEEEecCCCCcHHHHHHH-HcCCcEEEEeCCHHHHHHHHHHHHh
Confidence 367899999999999888777 7788999999999999999999864
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.50 E-value=0.1 Score=41.63 Aligned_cols=45 Identities=13% Similarity=-0.057 Sum_probs=37.6
Q ss_pred CCCCceeeEeeccc-cHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhh
Q 024811 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 155 ~~~~~~VLDlGcGt-G~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~ 199 (262)
.+++.+||-+|||+ |.++..+++..+ ..|.++|.++.-++.|++.
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~ 69 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ 69 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence 45788999999998 777788885544 4799999999999999986
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.85 E-value=0.14 Score=39.07 Aligned_cols=46 Identities=20% Similarity=0.091 Sum_probs=39.8
Q ss_pred CCCCceeeEeecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhc
Q 024811 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (262)
Q Consensus 155 ~~~~~~VLDlGcG-tG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l 200 (262)
.+++.+||=+||| .|.++..+++..+.+|.++|.++.-++.|++.-
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~g 70 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCG 70 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcC
Confidence 4467899999988 788888899777889999999999999999863
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=91.27 E-value=0.15 Score=44.60 Aligned_cols=46 Identities=24% Similarity=0.246 Sum_probs=36.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--------CcEEEEeCCHHHHHHHHhhccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--------NEVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--------~~V~~VD~s~~mld~Ar~~l~~ 202 (262)
+..+|+|+|+|.|.++..++.... .++.+||+|+.+.+.-++.+..
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~ 132 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG 132 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence 456899999999999998873221 2478999999999888887753
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.22 E-value=0.2 Score=40.16 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=40.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~ 201 (262)
.++..|||.=||+|..+.... ..+-+..++|++++.++.|++++.
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~-~~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAK-KLGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHc
Confidence 357899999999999887776 778899999999999999999874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.48 E-value=0.2 Score=38.80 Aligned_cols=45 Identities=16% Similarity=0.034 Sum_probs=38.2
Q ss_pred CCCCceeeEeeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhh
Q 024811 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (262)
Q Consensus 155 ~~~~~~VLDlGcGt-G~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~ 199 (262)
..++.+||=+|||+ |.++..+++..+. +|.++|.++.-++.|++.
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l 72 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI 72 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence 34678999999884 8899999977775 799999999999999875
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.69 E-value=0.23 Score=40.35 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=41.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a 203 (262)
.++..|||.=||+|..+.... ..+-+..++|+++..++.|++++...
T Consensus 206 ~~gdiVLDpF~GSGTT~~Aa~-~lgR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTARVAI-QEGRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CTTCEEEETTCTTCHHHHHHH-HHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred CCCCEEEecCCCCcHHHHHHH-HhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 368899999999999877776 77889999999999999999998754
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.56 E-value=0.33 Score=35.65 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=41.1
Q ss_pred eeeEeeccccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCCccc
Q 024811 160 VALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~---~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~~yD 232 (262)
+|+=|| .|+++..+++. .+..|.+||.+++.++.+++.+ ...++.+|..+... .-..+|
T Consensus 2 ~IvI~G--~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~------------~~~vi~Gd~~~~~~l~~~~i~~a~ 67 (132)
T d1lssa_ 2 YIIIAG--IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI------------DALVINGDCTKIKTLEDAGIEDAD 67 (132)
T ss_dssp EEEEEC--CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------------SSEEEESCTTSHHHHHHTTTTTCS
T ss_pred EEEEEC--CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh------------hhhhccCcccchhhhhhcChhhhh
Confidence 344455 47777777733 4678999999999998887653 34567777765421 113566
Q ss_pred hhhh
Q 024811 233 VIWV 236 (262)
Q Consensus 233 lI~s 236 (262)
++++
T Consensus 68 ~vv~ 71 (132)
T d1lssa_ 68 MYIA 71 (132)
T ss_dssp EEEE
T ss_pred hhcc
Confidence 6655
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=88.85 E-value=0.27 Score=40.70 Aligned_cols=67 Identities=10% Similarity=0.006 Sum_probs=52.4
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC-Cccchhhhhh
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIWVQW 238 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~-~~yDlI~s~~ 238 (262)
+|||+=||.|.++.-|-...+..+-++|.++.+.+.-+.|.. ..+++.|+.++.... ...|+++..+
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~------------~~~~~~Di~~~~~~~~~~~dll~~g~ 69 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------------AKLIKGDISKISSDEFPKCDGIIGGP 69 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC------------SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------------CCCccCChhhCCHhHcccccEEeecc
Confidence 699999999999988874456666799999999999888753 246778998886532 4689988654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=87.80 E-value=0.52 Score=35.60 Aligned_cols=81 Identities=12% Similarity=-0.043 Sum_probs=50.4
Q ss_pred eeeEeecc--ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 160 VALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 160 ~VLDlGcG--tG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
+|.=||+| -+.+++.|. +.+.+|.+.|.+++.++.|++.-. +.....+++.+ ...|+|+..
T Consensus 2 kI~iIG~G~mG~~lA~~l~-~~g~~V~~~d~~~~~~~~a~~~~~------------~~~~~~~~~~~----~~~DiIila 64 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLR-RRGHYLIGVSRQQSTCEKAVERQL------------VDEAGQDLSLL----QTAKIIFLC 64 (165)
T ss_dssp EEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHTTS------------CSEEESCGGGG----TTCSEEEEC
T ss_pred EEEEEeecHHHHHHHHHHH-HCCCEEEEEECCchHHHHHHHhhc------------cceeeeecccc----ccccccccc
Confidence 35556776 344566666 567899999999999998877421 11112222222 367887754
Q ss_pred hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 238 WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
- +.....++++++...|+|+
T Consensus 65 v-----p~~~~~~vl~~l~~~l~~~ 84 (165)
T d2f1ka2 65 T-----PIQLILPTLEKLIPHLSPT 84 (165)
T ss_dssp S-----CHHHHHHHHHHHGGGSCTT
T ss_pred C-----cHhhhhhhhhhhhhhcccc
Confidence 2 3444557888888877764
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.40 E-value=0.18 Score=42.24 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=50.7
Q ss_pred CceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC---CCccc
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYD 232 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~---~~~yD 232 (262)
+.+|+|+=||.|.++.-|-...+. -|-++|.++.+++.-+.+.. ...+++.|+.++... ....|
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~-----------~~~~~~~di~~~~~~~~~~~~~D 70 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----------HTQLLAKTIEGITLEEFDRLSFD 70 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------TSCEECSCGGGCCHHHHHHHCCS
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC-----------CCCcccCchhhCCHhHcCCCCcc
Confidence 468999999999998887633332 35678999999999888753 345667788776532 13678
Q ss_pred hhhhhh
Q 024811 233 VIWVQW 238 (262)
Q Consensus 233 lI~s~~ 238 (262)
+++...
T Consensus 71 ll~ggp 76 (343)
T d1g55a_ 71 MILMSP 76 (343)
T ss_dssp EEEECC
T ss_pred EEEeec
Confidence 888654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=85.38 E-value=0.67 Score=35.74 Aligned_cols=45 Identities=11% Similarity=-0.104 Sum_probs=37.9
Q ss_pred CCCCceeeEeeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhh
Q 024811 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (262)
Q Consensus 155 ~~~~~~VLDlGcGt-G~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~ 199 (262)
.+++.+||=+|||. |.++..+++..+. +|.++|.+++-++.|++.
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l 71 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY 71 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence 44678898899987 8999999966654 799999999999999874
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=85.19 E-value=0.2 Score=44.16 Aligned_cols=28 Identities=7% Similarity=-0.026 Sum_probs=19.9
Q ss_pred EcCCCCCCCCCCccchhhhhhHHhhcCc
Q 024811 218 CVPLQDFTPETGRYDVIWVQWCIGHLTD 245 (262)
Q Consensus 218 ~~d~~~~~~~~~~yDlI~s~~vl~hltD 245 (262)
.+.+.+=-++.++.|+++|++++|||+.
T Consensus 127 pGSFY~rLfP~~Slh~~~Ss~alHWLS~ 154 (359)
T d1m6ex_ 127 PGSFYGRLFPRNTLHFIHSSYSLMWLSQ 154 (359)
T ss_dssp ESCSSSCCSCTTCBSCEEEESCTTBCSS
T ss_pred CCchhhhcCCCCceEEeeehhhhhhhhc
Confidence 3444332234579999999999999974
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=84.97 E-value=0.54 Score=41.61 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=38.1
Q ss_pred CCCceeeEeeccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHhhcc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLA 201 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~---~~~V~~VD~s~~mld~Ar~~l~ 201 (262)
.+...++||||=.|..+..++... +.+|.++||++...+..++++.
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~ 259 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR 259 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 456799999999999998877332 4589999999999999988754
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=81.69 E-value=1.1 Score=34.60 Aligned_cols=45 Identities=9% Similarity=-0.138 Sum_probs=38.2
Q ss_pred CCCCceeeEeeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhh
Q 024811 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (262)
Q Consensus 155 ~~~~~~VLDlGcGt-G~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~ 199 (262)
.+++.+||=+|||+ |.++..+++..+. .|.++|+++.-++.|++.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~ 72 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 72 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence 45688999999998 8889999966665 688899999999999985
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=81.60 E-value=0.35 Score=40.49 Aligned_cols=69 Identities=13% Similarity=-0.019 Sum_probs=49.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC-Cccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~-~~yDlI~ 235 (262)
.+.+|||+=||.|.++.-|-...+.-|-++|.++.+++.-+.|.... .+.|+.++.+.. ..+|+|+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-------------~~~Di~~~~~~~~~~~Dll~ 76 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-------------PEGDITQVNEKTIPDHDILC 76 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-------------CBSCGGGSCGGGSCCCSEEE
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-------------CcCchhcCchhhcceeeeee
Confidence 46899999999999999988444555677899999999999987432 134555553321 3577777
Q ss_pred hhh
Q 024811 236 VQW 238 (262)
Q Consensus 236 s~~ 238 (262)
..+
T Consensus 77 ggp 79 (327)
T d2c7pa1 77 AGF 79 (327)
T ss_dssp EEC
T ss_pred ccc
Confidence 543
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=81.47 E-value=2.3 Score=35.78 Aligned_cols=99 Identities=10% Similarity=-0.041 Sum_probs=62.4
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCC-HHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC-C-------CCCC
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-------PETG 229 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s-~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~-~-------~~~~ 229 (262)
..|+.+|||-=.-.-.|- ....+..+|.+ |.+++.-++.+..... ....+..++..|+.+- . +...
T Consensus 91 ~qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~p~vi~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~ 165 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGV---TPTADRREVPIDLRQDWPPALRSAGFDPS 165 (297)
T ss_dssp CEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTC---CCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred CeEEEeCcccCChhhhcC--CCcCceEEEcCChHHHHHHHHHHHhcCC---CCCceEEEecccccchHHHHHHhcCCCCC
Confidence 357779999887665552 34556666665 6677665555543211 0123567777887641 1 0112
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.-=++++-.++.||+.++..++|+.+.....||
T Consensus 166 ~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~G 198 (297)
T d2uyoa1 166 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVG 198 (297)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTT
T ss_pred CCEEEEEccccccCCHHHHHHHHHHHHHhCCCC
Confidence 223444556899999999999999999988876
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.84 E-value=1.3 Score=33.63 Aligned_cols=45 Identities=11% Similarity=-0.014 Sum_probs=38.6
Q ss_pred CCCCceeeEeec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhh
Q 024811 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 155 ~~~~~~VLDlGc--GtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~ 199 (262)
++++.+||=.|+ |+|..+..+++..+.+|.+++-|++-++.+++.
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~ 72 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN 72 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred CCCCCEEEEEeccccccccccccccccCccccccccccccccccccc
Confidence 456889999996 789999999977888999999899888888874
|