Citrus Sinensis ID: 024818

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
MAAAASFAAQINVGSVSGPLQLNKALSPSRNAIEIPRKSSSFLSNASSSCSSFFSRPLTPVPPLTHFPTRKMGTRSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPMSEA
cHHHccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccEEEEEEEEccccccccEEEEEEEccccccHHHHHHHHHHHcccccccccccccEEccccEEccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEcccccccccccEEEEEEcccHHHHHHHHHccccccccccccEEEEcccccccccc
cccHHHHHHHHccccccccccHHHHcccccccccccccccccEcccccHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHccccccccccEEEEEEcccEEEEccccccccccccEccEccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEcccccEcccEEEEEEEEEEEEEc
MAAAASFAAQinvgsvsgplqlnkalspsrnaieiprksssflsnassscssffsrpltpvpplthfptrkmgtrsLVRASAEVADLQSKVTNKVYFdvsignpvgklAGRIVIglygddvpqtAENFRALCtgekgfgykgstFHRVIKDFMiqggdfdkgngtggksiygrtfkdenfklshigpgvvsmanagpntngsqffictvktpwldqrhVVFGQVLEGMDIVKLIEsqetdrgdrpgkkvvisdcgelpmsea
MAAAAsfaaqinvgsvsgplQLNKALSPSRNAIEIPRKSSSFLSNASSSCSSFfsrpltpvpplthfptrkmgTRSLVRASAEVAdlqskvtnkvyfdvsignpvGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIqggdfdkgngTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIEsqetdrgdrpgkkvvisdcgelpmsea
MAAAASFAAQINVGSVSGPLQLNKALSPSRNAIEIPRKsssflsnassscssffsRPLTPVPPLTHFPTRKMGTRSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQggdfdkgngtggkSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPMSEA
*********************************************************************************AEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLI****************************
***********N********************************************************TRKMGT*******************KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVK****************VVISDC*ELP****
********AQINVGSVSGPLQLNKALSPSRNAIEIPRKSS**************SRPLTPVPPLTHFPTRKMGTRSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPMSEA
***********************************************SSCSSFFSRPLTPVPPLTHFPTRKMGTRSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPMSEA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAAASFAAQINVGSVSGPLQLNKALSPSRNAIEIPRKSSSFLSNASSSCSSFFSRPLTPVPPLTHFPTRKMGTRSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPMSEA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query262 2.2.26 [Sep-21-2011]
Q9ASS6259 Peptidyl-prolyl cis-trans yes no 0.759 0.768 0.810 9e-95
P34791260 Peptidyl-prolyl cis-trans no no 0.835 0.842 0.597 3e-73
Q41651248 Peptidyl-prolyl cis-trans N/A no 0.675 0.713 0.668 5e-68
Q01490203 Peptidyl-prolyl cis-trans N/A no 0.660 0.852 0.693 2e-67
P0CP78231 Peptidyl-prolyl cis-trans yes no 0.641 0.727 0.661 2e-63
P0CP79231 Peptidyl-prolyl cis-trans N/A no 0.641 0.727 0.661 2e-63
P24367207 Peptidyl-prolyl cis-trans yes no 0.645 0.816 0.668 9e-63
P80311216 Peptidyl-prolyl cis-trans yes no 0.645 0.782 0.674 1e-62
P23284216 Peptidyl-prolyl cis-trans yes no 0.645 0.782 0.656 2e-62
P24369216 Peptidyl-prolyl cis-trans yes no 0.645 0.782 0.662 8e-62
>sp|Q9ASS6|CP20B_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  346 bits (888), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 163/201 (81%), Positives = 182/201 (90%), Gaps = 2/201 (0%)

Query: 64  LTHFPTRKMGTRSL-VRASAEVA-DLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDV 121
           L H    K   R   V+++AEV  + QSK+T+KVYFD+S+GNPVGKLAGRIVIGLYGDDV
Sbjct: 59  LLHTSYTKRNHRCFSVQSNAEVVTEPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDV 118

Query: 122 PQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFK 181
           PQT ENFRALCTGEKGFGYKGSTFHRVI+DFMIQGGDF+KGNGTGGKS+YGRTFKDENFK
Sbjct: 119 PQTVENFRALCTGEKGFGYKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFK 178

Query: 182 LSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDR 241
           LSH+GPGV+SMANAGPNTNGSQFFICT+KT WLD RHVVFGQV+EGM++VKLIE QETDR
Sbjct: 179 LSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDR 238

Query: 242 GDRPGKKVVISDCGELPMSEA 262
           GDRP KKVVI+DCG+LPMSEA
Sbjct: 239 GDRPRKKVVIADCGQLPMSEA 259
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|P34791|CP20C_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1 Back     alignment and function description
>sp|Q41651|CYPB_VICFA Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1 Back     alignment and function description
>sp|Q01490|PPIB_ORPSP Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1 Back     alignment and function description
>sp|P0CP78|PPIB_CRYNJ Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CPR2 PE=3 SV=1 Back     alignment and function description
>sp|P0CP79|PPIB_CRYNB Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CPR2 PE=3 SV=1 Back     alignment and function description
>sp|P24367|PPIB_CHICK Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1 Back     alignment and function description
>sp|P80311|PPIB_BOVIN Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4 Back     alignment and function description
>sp|P23284|PPIB_HUMAN Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2 Back     alignment and function description
>sp|P24369|PPIB_MOUSE Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
359473789262 PREDICTED: peptidyl-prolyl cis-trans iso 0.969 0.969 0.748 1e-102
224072532263 predicted protein [Populus trichocarpa] 0.984 0.980 0.745 1e-101
255547634256 peptidyl-prolyl cis-trans isomerase, put 0.961 0.984 0.744 1e-100
224057792263 isomerase peptidyl-prolyl cis-trans isom 0.984 0.980 0.730 1e-100
356576931253 PREDICTED: peptidyl-prolyl cis-trans iso 0.702 0.727 0.903 2e-94
242086519249 hypothetical protein SORBIDRAFT_09g00035 0.706 0.742 0.898 4e-94
255637428253 unknown [Glycine max] 0.702 0.727 0.898 7e-94
356576933212 PREDICTED: peptidyl-prolyl cis-trans iso 0.702 0.867 0.903 1e-93
449445564250 PREDICTED: peptidyl-prolyl cis-trans iso 0.744 0.78 0.823 1e-93
147856146180 hypothetical protein VITISV_040459 [Viti 0.667 0.972 0.937 1e-93
>gi|359473789|ref|XP_002265030.2| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic-like [Vitis vinifera] gi|296088703|emb|CBI38153.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/262 (74%), Positives = 214/262 (81%), Gaps = 8/262 (3%)

Query: 4   AASFAAQINVGSVSGPLQLN--KALSPSRNAIEIPRKSSSFLSNASSSCSSFFSR----P 57
           AAS     NVGS+S P  +   KAL P+ NA+++PR       ++SSS S         P
Sbjct: 2   AASLTTLSNVGSLSSPRSVAQIKALGPTCNALKLPRSPFPSNVSSSSSSSFVSGSFRLVP 61

Query: 58  LTPVPPLTHFPTRKMGTRSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLY 117
           LT    L     R+ G  S +RASA+ A LQSKVT KVYFD+SIGNPVGK+ GRIVIGL+
Sbjct: 62  LT--SSLNPCSRRRTGLLSSLRASAQEAPLQSKVTQKVYFDISIGNPVGKVVGRIVIGLF 119

Query: 118 GDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKD 177
           GDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKD
Sbjct: 120 GDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKD 179

Query: 178 ENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQ 237
           ENFKL+H+GPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKL+ESQ
Sbjct: 180 ENFKLAHVGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLVESQ 239

Query: 238 ETDRGDRPGKKVVISDCGELPM 259
           ETDRGDRP KKVVIS+CGELPM
Sbjct: 240 ETDRGDRPRKKVVISECGELPM 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224072532|ref|XP_002303772.1| predicted protein [Populus trichocarpa] gi|222841204|gb|EEE78751.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255547634|ref|XP_002514874.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] gi|223545925|gb|EEF47428.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224057792|ref|XP_002299326.1| isomerase peptidyl-prolyl cis-trans isomerase [Populus trichocarpa] gi|222846584|gb|EEE84131.1| isomerase peptidyl-prolyl cis-trans isomerase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356576931|ref|XP_003556583.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|242086519|ref|XP_002439092.1| hypothetical protein SORBIDRAFT_09g000350 [Sorghum bicolor] gi|241944377|gb|EES17522.1| hypothetical protein SORBIDRAFT_09g000350 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|255637428|gb|ACU19042.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356576933|ref|XP_003556584.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|449445564|ref|XP_004140542.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic-like [Cucumis sativus] gi|449526487|ref|XP_004170245.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147856146|emb|CAN82436.1| hypothetical protein VITISV_040459 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
TAIR|locus:2179822259 Pnsl5 "Photosynthetic NDH subc 0.946 0.957 0.624 4.2e-79
TAIR|locus:2079507313 ROC4 "rotamase CYP 4" [Arabido 0.694 0.581 0.632 3.5e-59
UNIPROTKB|F1NV93207 PPIB "Peptidyl-prolyl cis-tran 0.645 0.816 0.616 2.1e-52
UNIPROTKB|F1P4M4223 PPIB "Peptidyl-prolyl cis-tran 0.645 0.757 0.616 2.1e-52
UNIPROTKB|P30405207 PPIF "Peptidyl-prolyl cis-tran 0.709 0.898 0.578 3.5e-52
UNIPROTKB|F1S2E3207 LOC100152612 "Peptidyl-prolyl 0.702 0.888 0.583 5.6e-52
UNIPROTKB|P24367207 PPIB "Peptidyl-prolyl cis-tran 0.645 0.816 0.610 1.5e-51
UNIPROTKB|P80311216 PPIB "Peptidyl-prolyl cis-tran 0.645 0.782 0.616 1.5e-51
ZFIN|ZDB-GENE-040426-1955216 ppib "peptidylprolyl isomerase 0.645 0.782 0.616 2.4e-51
UNIPROTKB|F1PLV2216 PPIB "Peptidyl-prolyl cis-tran 0.645 0.782 0.610 3.1e-51
TAIR|locus:2179822 Pnsl5 "Photosynthetic NDH subcomplex L 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 158/253 (62%), Positives = 182/253 (71%)

Query:    15 SVSGPLQLN---KALSPSRNAIEIPRKXXXXXXXXXXXXXXXXXRPLTPVPPLTHFPTRK 71
             ++S P  L+   + LSP   +                        P +    L H    K
Sbjct:     7 TLSNPKSLSAPPRRLSPINTSAFTSTSFRLRTKSSFDSISFSSSTPFSASSLLLHTSYTK 66

Query:    72 MGTRSL-VRASAEVA-DLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFR 129
                R   V+++AEV  + QSK+T+KVYFD+S+GNPVGKLAGRIVIGLYGDDVPQT ENFR
Sbjct:    67 RNHRCFSVQSNAEVVTEPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFR 126

Query:   130 ALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGV 189
             ALCTGEKGFGYKGSTFHRVI+DFMIQ             S+YGRTFKDENFKLSH+GPGV
Sbjct:   127 ALCTGEKGFGYKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGV 186

Query:   190 VSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKV 249
             +SMANAGPNTNGSQFFICT+KT WLD RHVVFGQV+EGM++VKLIE QETDRGDRP KKV
Sbjct:   187 LSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKV 246

Query:   250 VISDCGELPMSEA 262
             VI+DCG+LPMSEA
Sbjct:   247 VIADCGQLPMSEA 259
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS;IMP
GO:0005739 "mitochondrion" evidence=ISM
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0009543 "chloroplast thylakoid lumen" evidence=IDA
GO:0031977 "thylakoid lumen" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0043424 "protein histidine kinase binding" evidence=IPI
GO:0009533 "chloroplast stromal thylakoid" evidence=IDA
GO:0010275 "NAD(P)H dehydrogenase complex assembly" evidence=IMP
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
TAIR|locus:2079507 ROC4 "rotamase CYP 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NV93 PPIB "Peptidyl-prolyl cis-trans isomerase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4M4 PPIB "Peptidyl-prolyl cis-trans isomerase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P30405 PPIF "Peptidyl-prolyl cis-trans isomerase F, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2E3 LOC100152612 "Peptidyl-prolyl cis-trans isomerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P24367 PPIB "Peptidyl-prolyl cis-trans isomerase B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P80311 PPIB "Peptidyl-prolyl cis-trans isomerase B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1955 ppib "peptidylprolyl isomerase B (cyclophilin B)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLV2 PPIB "Peptidyl-prolyl cis-trans isomerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0CP78PPIB_CRYNJ5, ., 2, ., 1, ., 80.66100.64120.7272yesno
Q9TW32PPIB_DICDI5, ., 2, ., 1, ., 80.65140.62590.8324yesno
P23284PPIB_HUMAN5, ., 2, ., 1, ., 80.65690.64500.7824yesno
Q8X166PPIB_ASPNG5, ., 2, ., 1, ., 80.67850.62970.7783yesno
Q9ASS6CP20B_ARATH5, ., 2, ., 1, ., 80.81090.75950.7683yesno
O94273PPIB_SCHPO5, ., 2, ., 1, ., 80.66660.62970.8208yesno
P80311PPIB_BOVIN5, ., 2, ., 1, ., 80.67440.64500.7824yesno
P52011CYP3_CAEEL5, ., 2, ., 1, ., 80.63950.61450.9306yesno
Q4I5R9PPIB_GIBZE5, ., 2, ., 1, ., 80.65680.62590.6612yesno
Q4WP12PPIB_ASPFU5, ., 2, ., 1, ., 80.62080.68320.8564yesno
Q5B4R3PPIB_EMENI5, ., 2, ., 1, ., 80.67830.64120.7850yesno
P24369PPIB_MOUSE5, ., 2, ., 1, ., 80.66270.64500.7824yesno
P24368PPIB_RAT5, ., 2, ., 1, ., 80.66470.64120.7777yesno
P24367PPIB_CHICK5, ., 2, ., 1, ., 80.66860.64500.8164yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.2.10.976
4th Layer5.2.1.80.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
cd01926164 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik 1e-106
PTZ00060183 PTZ00060, PTZ00060, cyclophilin; Provisional 2e-80
PLN03149186 PLN03149, PLN03149, peptidyl-prolyl isomerase H (c 1e-70
cd00317146 cd00317, cyclophilin, cyclophilin: cyclophilin-typ 2e-70
COG0652158 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase 8e-63
pfam00160144 pfam00160, Pro_isomerase, Cyclophilin type peptidy 1e-62
cd01927148 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo 2e-55
cd01923159 cd01923, cyclophilin_RING, cyclophilin_RING: cyclo 3e-48
cd01928153 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3 2e-46
cd01922146 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY 4e-46
cd01925171 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC 1e-36
cd01921166 cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph 3e-30
PTZ00221249 PTZ00221, PTZ00221, cyclophilin; Provisional 6e-28
cd01920155 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP 4e-19
PRK10791164 PRK10791, PRK10791, peptidyl-prolyl cis-trans isom 6e-17
cd01924176 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40 3e-12
PRK10903190 PRK10903, PRK10903, peptidyl-prolyl cis-trans isom 4e-12
>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain Back     alignment and domain information 
 Score =  304 bits (782), Expect = e-106
 Identities = 121/167 (72%), Positives = 139/167 (83%), Gaps = 9/167 (5%)

Query: 94  KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKG-----FGYKGSTFHRV 148
           KV+FD++IG   G+ AGRIV+ L+ D VP+TAENFRALCTGEKG     FGYKGSTFHRV
Sbjct: 2   KVFFDITIG---GEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRV 58

Query: 149 IKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICT 208
           I DFMIQGGDF +GNGTGGKSIYG  F DENFKL H GPG++SMANAGPNTNGSQFFI T
Sbjct: 59  IPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITT 118

Query: 209 VKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCG 255
           VKTPWLD +HVVFG+V+EGMD+VK IE+  +  G +P KKVVI+DCG
Sbjct: 119 VKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNG-KPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional Back     alignment and domain information
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional Back     alignment and domain information
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases Back     alignment and domain information
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Back     alignment and domain information
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain Back     alignment and domain information
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain Back     alignment and domain information
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like Back     alignment and domain information
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2 Back     alignment and domain information
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 Back     alignment and domain information
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM) Back     alignment and domain information
>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional Back     alignment and domain information
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E Back     alignment and domain information
>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional Back     alignment and domain information
>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40 Back     alignment and domain information
>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 262
KOG0880217 consensus Peptidyl-prolyl cis-trans isomerase [Pos 100.0
KOG0546 372 consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos 100.0
cd01926164 cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph 100.0
KOG0879177 consensus U-snRNP-associated cyclophilin type pept 100.0
PTZ00060183 cyclophilin; Provisional 100.0
PLN03149186 peptidyl-prolyl isomerase H (cyclophilin H); Provi 100.0
PTZ00221249 cyclophilin; Provisional 100.0
cd01923159 cyclophilin_RING cyclophilin_RING: cyclophilin-typ 100.0
KOG0881164 consensus Cyclophilin type peptidyl-prolyl cis-tra 100.0
cd01927148 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ 100.0
cd01928153 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro 100.0
COG0652158 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase 100.0
KOG0111298 consensus Cyclophilin-type peptidyl-prolyl cis-tra 100.0
cd01921166 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type 100.0
cd01922146 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c 100.0
cd01925171 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: 100.0
PRK10903190 peptidyl-prolyl cis-trans isomerase A (rotamase A) 100.0
KOG0883518 consensus Cyclophilin type, U box-containing pepti 100.0
PRK10791164 peptidyl-prolyl cis-trans isomerase B (rotamase B) 100.0
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 100.0
cd01920155 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc 100.0
KOG0884161 consensus Similar to cyclophilin-type peptidyl-pro 100.0
cd00317146 cyclophilin cyclophilin: cyclophilin-type peptidyl 100.0
PF00160155 Pro_isomerase: Cyclophilin type peptidyl-prolyl ci 100.0
KOG0865167 consensus Cyclophilin type peptidyl-prolyl cis-tra 100.0
cd01924176 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc 100.0
KOG0885 439 consensus Peptidyl-prolyl cis-trans isomerase [Pos 100.0
KOG0415 479 consensus Predicted peptidyl prolyl cis-trans isom 100.0
KOG0882 558 consensus Cyclophilin-related peptidyl-prolyl cis- 97.79
TIGR03268 503 methan_mark_3 putative methanogenesis marker prote 96.46
TIGR03268503 methan_mark_3 putative methanogenesis marker prote 96.4
PRK00969 508 hypothetical protein; Provisional 96.33
COG4070 512 Predicted peptidyl-prolyl cis-trans isomerase (rot 96.02
COG4070512 Predicted peptidyl-prolyl cis-trans isomerase (rot 96.0
PRK00969508 hypothetical protein; Provisional 95.85
PF12903147 DUF3830: Protein of unknown function (DUF3830); In 91.37
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-54  Score=368.28  Aligned_cols=176  Identities=69%  Similarity=1.150  Sum_probs=170.6

Q ss_pred             hhhcccCCcCcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhh-CCCcceecCCeEEEeecCcEEeeCCCCC
Q 024818           83 EVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCT-GEKGFGYKGSTFHRVIKDFMIQGGDFDK  161 (262)
Q Consensus        83 ~~~~~~~~~~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~-g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~  161 (262)
                      ..+.+.+++|++||||+++++   ...|||+|+||++.+|+||+||+.||+ +.++++|.|+.||||+|||||||||+..
T Consensus        30 ~~~~~~p~vT~kV~fdi~~g~---~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~  106 (217)
T KOG0880|consen   30 KKYEPGPKVTHKVYFDIEIGG---EPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTK  106 (217)
T ss_pred             cccCCCCcceeEEEEEEEECC---EeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCcccc
Confidence            456778899999999999997   899999999999999999999999998 8889999999999999999999999999


Q ss_pred             CCCCCCcccCCCCCCCCCCCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCC
Q 024818          162 GNGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDR  241 (262)
Q Consensus       162 ~~g~g~~s~~g~~~~~e~~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~  241 (262)
                      ++++|+.++||.+|+||++.|+|.++|.|+||+.|+++||||||||+...+|||++|+|||+|++|||+|.+|+.+++|.
T Consensus       107 g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~  186 (217)
T KOG0880|consen  107 GDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDE  186 (217)
T ss_pred             CCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCeEEeeeeeecCCC
Q 024818          242 GDRPGKKVVISDCGELPMSE  261 (262)
Q Consensus       242 ~~~P~~~I~I~~cGvL~~~~  261 (262)
                      +++|.++++|.+||+|+++.
T Consensus       187 ~dkP~e~v~I~~~g~l~~~~  206 (217)
T KOG0880|consen  187 RDKPLEDVVIANCGELPVEY  206 (217)
T ss_pred             CCCccccEEEeecCcccccc
Confidence            99999999999999999864

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain Back     alignment and domain information
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00060 cyclophilin; Provisional Back     alignment and domain information
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional Back     alignment and domain information
>PTZ00221 cyclophilin; Provisional Back     alignment and domain information
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain Back     alignment and domain information
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain Back     alignment and domain information
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like Back     alignment and domain information
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM) Back     alignment and domain information
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2 Back     alignment and domain information
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 Back     alignment and domain information
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional Back     alignment and domain information
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E Back     alignment and domain information
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases Back     alignment and domain information
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms Back     alignment and domain information
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40 Back     alignment and domain information
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3 Back     alignment and domain information
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3 Back     alignment and domain information
>PRK00969 hypothetical protein; Provisional Back     alignment and domain information
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00969 hypothetical protein; Provisional Back     alignment and domain information
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
1cyn_A178 Cyclophilin B Complexed With [d-(Cholinylester)ser8 5e-55
3ich_A188 Crystal Structure Of Cyclophilin B At 1.2 A Resolut 6e-55
4frv_A185 Crystal Structure Of Mutated Cyclophilin B That Cau 9e-55
4fru_A185 Crystal Structure Of Horse Wild-Type Cyclophilin B 1e-54
3r49_A166 Human Cyclophilin D Complexed With Quinolin-8-Amine 2e-54
2bit_X165 Crystal Structure Of Human Cyclophilin D At 1.7 A R 2e-54
3qyu_A164 Crystal Structure Of Human Cyclophilin D At 1.54 A 2e-54
2z6w_A165 Crystal Structure Of Human Cyclophilin D In Complex 2e-54
1xo7_A166 Crystal Structure Of Cyclophilin From Trypanosoma C 4e-52
1dyw_A173 Biochemical And Structural Characterization Of A Di 2e-51
2rmc_A182 Crystal Structure Of Murine Cyclophilin C Complexed 1e-50
1h0p_A182 Cyclophilin_5 From C. Elegans Length = 182 5e-50
3rdd_A184 Human Cyclophilin A Complexed With An Inhibitor Len 1e-49
2esl_A190 Human Cyclophilin C In Complex With Cyclosporin A L 1e-49
2wlw_A165 Structure Of The N-Terminal Capsid Domain Of Hiv-2 3e-49
4dgd_A165 Trimcyp Cyclophilin Domain From Macaca Mulatta: H70 3e-49
2rma_A165 Crystal Structures Of Cyclophilin A Complexed With 4e-49
1bck_A165 Human Cyclophilin A Complexed With 2-Thr Cyclospori 5e-49
5cyh_A164 Cyclophilin A Complexed With Dipeptide Gly-Pro Leng 5e-49
1m9e_A164 X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- 5e-49
2xgy_B173 Complex Of Rabbit Endogenous Lentivirus (Relik)caps 6e-49
2alf_A164 Crystal Structure Of Human Cypa Mutant K131a Length 7e-49
3k0o_A165 Room Temperature Structure Of Cypa Mutant Ser99thr 8e-49
3k0r_A165 Cryogenic Structure Of Cypa Mutant Arg55lys Length 9e-49
2x25_B169 Free Acetyl-Cypa Orthorhombic Form Length = 169 1e-48
2x2c_K165 Acetyl-Cypa:cyclosporine Complex Length = 165 1e-48
2x2a_A165 Free Acetyl-Cypa Trigonal Form Length = 165 1e-48
2r99_A173 Crystal Structure Of Cyclophilin Abh-Like Domain Of 1e-48
2x83_B163 Evolutionary Basis Of Hiv Restriction By The Antire 1e-48
1zmf_A165 C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1 2e-48
2hqj_A183 Cyclophilin From Leishmania Major Length = 183 2e-48
2haq_A172 Crystal Structure Of Cyclophilin A From Leishmania 3e-48
3bt8_A172 Crystal Structure Of Mutant Cyclophilin (R147a) Fro 2e-47
1ist_A162 Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng 7e-47
2ck1_A172 The Structure Of Oxidised Cyclophilin A From S. Man 8e-47
1ihg_A 370 Bovine Cyclophilin 40, Monoclinic Form Length = 370 1e-46
3uch_A174 Crystal Structure Of A Hypotherical Peptidyl-Prolyl 2e-46
1aws_A164 Secypa Complexed With Hagpia (Pseudo-Symmetric Mono 2e-46
2cfe_A162 The 1.5 A Crystal Structure Of The Malassezia Sympo 4e-45
2plu_A186 Crystal Structure Of Cryptosporidium Parvum Cycloph 5e-44
1qng_A170 Plasmodium Falciparum Cyclophilin Complexed With Cy 2e-43
3pmp_A164 Crystal Structure Of Cyclophilin A From Moniliophth 4e-43
3o7t_A164 Crystal Structure Of Cyclophilin A From Moniliophth 4e-43
1qoi_A177 U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 7e-43
1qnh_A170 Plasmodium Falciparum Cyclophilin (Double Mutant) C 3e-42
3k2c_A193 Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom 1e-40
1c5f_A177 Crystal Structure Of The Cyclophilin-Like Domain Fr 5e-40
2gw2_A198 Crystal Structure Of The Peptidyl-Prolyl Isomerase 2e-39
2wfj_A179 Atomic Resolution Crystal Structure Of The Ppiase D 3e-39
2wfi_A179 Atomic Resolution Crystal Structure Of The Ppiase D 3e-39
4i9y_A167 Structure Of The C-terminal Domain Of Nup358 Length 2e-38
2c3b_A172 The Crystal Structure Of Aspergillus Fumigatus Cycl 8e-37
2he9_A192 Structure Of The Peptidylprolyl Isomerase Domain Of 8e-36
1z81_A229 Crystal Structure Of Cyclophilin From Plasmodium Yo 5e-32
1xwn_A174 Solution Structure Of Cyclophilin Like 1(Ppil1) And 7e-26
2x7k_A166 The Crystal Structure Of Ppil1 In Complex With Cycl 7e-26
2k7n_A203 Solution Structure Of The Ppil1 Bound To A Fragment 8e-26
2a2n_A176 Crystal Structure Of The Peptidylprolyl Isomerase D 9e-25
2fu0_A160 Plasmodium Falciparum Cyclophilin Pfe0505w Putative 1e-24
1zkc_A197 Crystal Structure Of The Cyclophiln_ring Domain Of 5e-24
1w74_A191 X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer 7e-22
1xyh_A161 Crystal Structure Of Recombinant Human Cyclophilin 8e-22
2oju_A167 X-Ray Structure Of Complex Of Human Cyclophilin J W 9e-22
2b71_A196 Plasmodium Yoelii Cyclophilin-Like Protein Length = 8e-21
2poe_A185 Crystal Structure Of Cryptosporidium Parvum Cycloph 2e-17
2hq6_A185 Structure Of The Cyclophilin_cecyp16-like Domain Of 5e-14
3bo7_A201 Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro 8e-14
3t1u_A163 Crystal Structure Of The Complex Of Cyclophilin-a E 5e-09
2nul_A164 Peptidylprolyl Isomerase From E. Coli Length = 164 4e-08
1lop_A164 Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P 2e-07
1j2a_A166 Structure Of E. Coli Cyclophilin B K163t Mutant Len 5e-07
3bkp_A232 Crystal Structure Of The Toxoplasma Gondii Cyclophi 5e-07
1clh_A166 Three-Dimensional Solution Structure Of Escherichia 5e-07
3s6m_A167 The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer 1e-04
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178 Back     alignment and structure 
Iteration: 1

 Score =  210 bits (535), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 103/172 (59%), Positives = 126/172 (73%), Gaps = 3/172 (1%)
Query: 90  KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVI 149
           KVT KVYFD+ IG+   +  GR++ GL+G  VP+T +NF AL TGEKGFGYK S FHRVI
Sbjct: 3   KVTVKVYFDLRIGD---EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVI 59
Query: 150 KDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTV 209
           KDFMIQ             SIYG  F DENFKL H GPG VSMANAG +TNGSQFFI TV
Sbjct: 60  KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 119
Query: 210 KTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPMSE 261
           KT WLD +HVVFG+VLEGM++V+ +ES +TD  D+P K V+I+DCG++ + +
Sbjct: 120 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEK 171
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188 Back     alignment and structure
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185 Back     alignment and structure
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185 Back     alignment and structure
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166 Back     alignment and structure
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165 Back     alignment and structure
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164 Back     alignment and structure
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165 Back     alignment and structure
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166 Back     alignment and structure
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173 Back     alignment and structure
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182 Back     alignment and structure
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182 Back     alignment and structure
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184 Back     alignment and structure
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190 Back     alignment and structure
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165 Back     alignment and structure
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165 Back     alignment and structure
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165 Back     alignment and structure
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165 Back     alignment and structure
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164 Back     alignment and structure
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164 Back     alignment and structure
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173 Back     alignment and structure
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164 Back     alignment and structure
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165 Back     alignment and structure
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165 Back     alignment and structure
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169 Back     alignment and structure
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165 Back     alignment and structure
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165 Back     alignment and structure
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173 Back     alignment and structure
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163 Back     alignment and structure
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165 Back     alignment and structure
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183 Back     alignment and structure
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172 Back     alignment and structure
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172 Back     alignment and structure
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162 Back     alignment and structure
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172 Back     alignment and structure
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370 Back     alignment and structure
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174 Back     alignment and structure
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164 Back     alignment and structure
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162 Back     alignment and structure
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186 Back     alignment and structure
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170 Back     alignment and structure
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164 Back     alignment and structure
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164 Back     alignment and structure
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177 Back     alignment and structure
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170 Back     alignment and structure
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193 Back     alignment and structure
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177 Back     alignment and structure
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198 Back     alignment and structure
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179 Back     alignment and structure
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179 Back     alignment and structure
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167 Back     alignment and structure
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172 Back     alignment and structure
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192 Back     alignment and structure
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229 Back     alignment and structure
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174 Back     alignment and structure
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166 Back     alignment and structure
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203 Back     alignment and structure
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176 Back     alignment and structure
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160 Back     alignment and structure
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197 Back     alignment and structure
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191 Back     alignment and structure
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161 Back     alignment and structure
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167 Back     alignment and structure
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196 Back     alignment and structure
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185 Back     alignment and structure
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185 Back     alignment and structure
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201 Back     alignment and structure
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163 Back     alignment and structure
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164 Back     alignment and structure
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164 Back     alignment and structure
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166 Back     alignment and structure
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232 Back     alignment and structure
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166 Back     alignment and structure
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
3ich_A188 Peptidyl-prolyl CIS-trans isomerase B; beta sandwi 1e-126
2he9_A192 NK-tumor recognition protein; cyclosporin, isomera 1e-124
2haq_A172 Cyclophilin; rotamase, proline, isomerase, CIS-tra 1e-122
1a58_A177 Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala 1e-121
1mzw_A177 Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc 1e-121
3k2c_A193 Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, 1e-121
2wfi_A179 Peptidyl-prolyl CIS-trans isomerase G; phosphoprot 1e-120
3rdd_A184 Peptidyl-prolyl CIS-trans isomerase A; beta barrel 1e-120
2cmt_A172 Peptidyl-prolyl CIS-trans isomerase E; rotamase ac 1e-120
2r99_A173 Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i 1e-119
2igv_A173 Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1 1e-118
3pmp_A164 Cyclophilin A; peptidyl prolyl isomerase, isomeras 1e-117
1qng_A170 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 1e-117
2z6w_A165 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 1e-117
2poy_A186 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 1e-116
2c3b_A172 Ppiase, cyclophilin; isomerase, 3D domain swapping 1e-115
1ihg_A 370 Cyclophilin 40; ppiase immunophilin tetratricopept 1e-114
1z81_A229 Cyclophilin; structural genomics, structural genom 1e-114
2ose_A234 Probable peptidyl-prolyl CIS-trans isomerase; cycl 1e-108
2fu0_A160 Cyclophilin, putative; PFE0505W, cyclosporin-bindi 1e-82
2k7n_A203 Peptidyl-prolyl CIS-trans isomerase-like 1; beta b 2e-81
2x7k_A166 Peptidyl-prolyl CIS-trans isomerase-like 1; isomer 1e-80
2a2n_A176 Peptidylprolyl isomerase domain and WD repeat CON; 1e-78
2b71_A196 Cyclophilin-like protein; structural genomics, str 2e-77
3bo7_A201 Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; 4e-73
2poe_A185 Cyclophilin-like protein, putative; cryptosporidiu 4e-72
2ok3_A161 Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b 5e-70
1zkc_A197 Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr 6e-68
2hq6_A185 Serologically defined colon cancer antigen 10; pro 7e-68
1w74_A191 Peptidyl-prolyl CIS-trans isomerase A; cyclophilin 5e-64
3bkp_A232 Cyclophilin; malaria, isomerase, structural GENO s 3e-60
3s6m_A167 Peptidyl-prolyl CIS-trans isomerase; seattle struc 8e-50
1lop_A164 Cyclophilin A; rotamase, isomerase-isomerase inhib 7e-49
1v9t_A166 Cyclophilin B; beta barrel, isomerase-isomerase in 1e-47
3rfy_A369 Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; 6e-37
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188 Back     alignment and structure
 Score =  354 bits (910), Expect = e-126
 Identities = 113/182 (62%), Positives = 139/182 (76%), Gaps = 3/182 (1%)

Query: 81  SAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGY 140
            ++      KVT KVYFD+ IG    +  GR++ GL+G  VP+T +NF AL TGEKGFGY
Sbjct: 4   GSDEKKKGPKVTVKVYFDLRIG---DEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGY 60

Query: 141 KGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTN 200
           K S FHRVIKDFMIQGGDF +G+GTGGKSIYG  F DENFKL H GPG VSMANAG +TN
Sbjct: 61  KNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTN 120

Query: 201 GSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPMS 260
           GSQFFI TVKT WLD +HVVFG+VLEGM++V+ +ES +TD  D+P K V+I+DCG++ + 
Sbjct: 121 GSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVE 180

Query: 261 EA 262
           + 
Sbjct: 181 KP 182
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192 Back     alignment and structure
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172 Back     alignment and structure
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177 Back     alignment and structure
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177 Back     alignment and structure
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193 Back     alignment and structure
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179 Back     alignment and structure
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184 Back     alignment and structure
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172 Back     alignment and structure
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173 Back     alignment and structure
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173 Back     alignment and structure
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164 Back     alignment and structure
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170 Back     alignment and structure
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165 Back     alignment and structure
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186 Back     alignment and structure
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172 Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 Back     alignment and structure
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229 Back     alignment and structure
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234 Back     alignment and structure
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160 Back     alignment and structure
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203 Back     alignment and structure
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166 Back     alignment and structure
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176 Back     alignment and structure
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196 Back     alignment and structure
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201 Back     alignment and structure
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185 Back     alignment and structure
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161 Back     alignment and structure
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197 Back     alignment and structure
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185 Back     alignment and structure
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191 Back     alignment and structure
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232 Back     alignment and structure
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167 Back     alignment and structure
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164 Back     alignment and structure
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166 Back     alignment and structure
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
2haq_A172 Cyclophilin; rotamase, proline, isomerase, CIS-tra 100.0
3ich_A188 Peptidyl-prolyl CIS-trans isomerase B; beta sandwi 100.0
4fru_A185 Cyclophilin B, peptidyl-prolyl CIS-trans isomerase 100.0
2z6w_A165 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
2cmt_A172 Peptidyl-prolyl CIS-trans isomerase E; rotamase ac 100.0
1a58_A177 Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala 100.0
2r99_A173 Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i 100.0
2wfi_A179 Peptidyl-prolyl CIS-trans isomerase G; phosphoprot 100.0
3pmp_A164 Cyclophilin A; peptidyl prolyl isomerase, isomeras 100.0
2igv_A173 Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1 100.0
1qng_A170 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
2he9_A192 NK-tumor recognition protein; cyclosporin, isomera 100.0
3rdd_A184 Peptidyl-prolyl CIS-trans isomerase A; beta barrel 100.0
1mzw_A177 Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc 100.0
2poy_A186 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
2c3b_A172 Ppiase, cyclophilin; isomerase, 3D domain swapping 100.0
3k2c_A193 Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, 100.0
1z81_A229 Cyclophilin; structural genomics, structural genom 100.0
2ose_A234 Probable peptidyl-prolyl CIS-trans isomerase; cycl 100.0
2x7k_A166 Peptidyl-prolyl CIS-trans isomerase-like 1; isomer 100.0
2fu0_A160 Cyclophilin, putative; PFE0505W, cyclosporin-bindi 100.0
2ok3_A161 Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b 100.0
2poe_A185 Cyclophilin-like protein, putative; cryptosporidiu 100.0
1zkc_A197 Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr 100.0
2b71_A196 Cyclophilin-like protein; structural genomics, str 100.0
1ihg_A 370 Cyclophilin 40; ppiase immunophilin tetratricopept 100.0
2k7n_A203 Peptidyl-prolyl CIS-trans isomerase-like 1; beta b 100.0
2a2n_A176 Peptidylprolyl isomerase domain and WD repeat CON; 100.0
3bo7_A201 Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; 100.0
1w74_A191 Peptidyl-prolyl CIS-trans isomerase A; cyclophilin 100.0
2hq6_A185 Serologically defined colon cancer antigen 10; pro 100.0
3bkp_A232 Cyclophilin; malaria, isomerase, structural GENO s 100.0
1v9t_A166 Cyclophilin B; beta barrel, isomerase-isomerase in 100.0
1lop_A164 Cyclophilin A; rotamase, isomerase-isomerase inhib 100.0
3s6m_A167 Peptidyl-prolyl CIS-trans isomerase; seattle struc 100.0
3rfy_A369 Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; 100.0
3kop_A188 Uncharacterized protein; protein with A cyclophili 94.6
2nnz_A153 Hypothetical protein; beta-barrel, structural geno 94.08
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Back     alignment and structure
Probab=100.00  E-value=6.3e-52  Score=352.54  Aligned_cols=166  Identities=65%  Similarity=1.082  Sum_probs=159.7

Q ss_pred             cCCcCcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCC
Q 024818           88 QSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGG  167 (262)
Q Consensus        88 ~~~~~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~  167 (262)
                      .|..+++||||+++++   ++.|+|+||||++.||++|+||++||+|++|++|+|+.||||+++|||||||+..+++.++
T Consensus         7 ~~~~~~~v~~di~i~~---t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg   83 (172)
T 2haq_A            7 EPEVTAKVYFDVMIDS---EPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGG   83 (172)
T ss_dssp             CCCCCEEEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCCCCCeEEEEEEECC---EecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCC
Confidence            4677899999999997   9999999999999999999999999999888889999999999999999999877888999


Q ss_pred             cccCCCCCCCCCCCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCC
Q 024818          168 KSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGK  247 (262)
Q Consensus       168 ~s~~g~~~~~e~~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~  247 (262)
                      .++||+.+++|+..++|. +|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|++.+++.+++|.+
T Consensus        84 ~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~  162 (172)
T 2haq_A           84 KSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVK  162 (172)
T ss_dssp             CCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSS
T ss_pred             ccccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCC
Confidence            999999999999999999 9999999999999999999999999999999999999999999999999999998899999


Q ss_pred             CeEEeeeeee
Q 024818          248 KVVISDCGEL  257 (262)
Q Consensus       248 ~I~I~~cGvL  257 (262)
                      +|+|.+||+|
T Consensus       163 ~v~I~~~g~l  172 (172)
T 2haq_A          163 PVKIVASGEL  172 (172)
T ss_dssp             CEEEEEEEEC
T ss_pred             CeEEEEeEEC
Confidence            9999999997
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Back     alignment and structure
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Back     alignment and structure
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Back     alignment and structure
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Back     alignment and structure
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Back     alignment and structure
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Back     alignment and structure
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Back     alignment and structure
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A Back     alignment and structure
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Back     alignment and structure
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Back     alignment and structure
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Back     alignment and structure
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Back     alignment and structure
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Back     alignment and structure
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Back     alignment and structure
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Back     alignment and structure
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Back     alignment and structure
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Back     alignment and structure
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Back     alignment and structure
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Back     alignment and structure
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Back     alignment and structure
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Back     alignment and structure
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Back     alignment and structure
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Back     alignment and structure
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Back     alignment and structure
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Back     alignment and structure
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Back     alignment and structure
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Back     alignment and structure
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Back     alignment and structure
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Back     alignment and structure
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Back     alignment and structure
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Back     alignment and structure
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A* Back     alignment and structure
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Back     alignment and structure
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP} Back     alignment and structure
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 262
d1a33a_174 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode ( 4e-63
d2rmca_182 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus 5e-63
d2cfea1162 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 7e-63
d1h0pa_182 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd 3e-61
d1xo7a_166 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom 2e-60
d2igva1172 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno 4e-59
d2z6wa1164 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c 2e-58
d1qnga_170 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium 3e-57
d1ihga2195 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain 3e-56
d2c3ba1171 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper 5e-56
d1qoia_173 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom 4e-55
d2r99a1161 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl 1e-54
d1zkca1178 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso 7e-49
d1z81a1186 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas 3e-48
d1xwna1166 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome 1e-46
d1w74a_171 b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 6e-42
d2ok3a1159 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B 9e-42
d2b71a1169 b.62.1.1 (A:23-191) Cyclophilin-like protein PY006 3e-37
d2fu0a1155 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w { 4e-36
d2a2na1164 b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma 5e-35
d1v9ta_166 b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 7e-32
d1lopa_164 b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 8e-32
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174 Back     information, alignment and structure

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  193 bits (492), Expect = 4e-63
 Identities = 100/176 (56%), Positives = 118/176 (67%), Gaps = 11/176 (6%)

Query: 90  KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YK 141
           K   +V+ DV+I    G LAGRIV+ LY D  P+T  NF  LCTG  G G        YK
Sbjct: 1   KDRRRVFLDVTID---GNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYK 57

Query: 142 GSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNG 201
           GSTFHRVIK+FMIQGGDF KG+GTGG+SIYG  F DE F + H  P VVSMAN GPNTNG
Sbjct: 58  GSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNG 117

Query: 202 SQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
           SQFFI T   P L+  HVVFG+V+ G ++V  IE  +T+  +RP   VVI +CGEL
Sbjct: 118 SQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 173
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182 Back     information, alignment and structure
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162 Back     information, alignment and structure
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182 Back     information, alignment and structure
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166 Back     information, alignment and structure
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172 Back     information, alignment and structure
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Back     information, alignment and structure
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170 Back     information, alignment and structure
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195 Back     information, alignment and structure
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171 Back     information, alignment and structure
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173 Back     information, alignment and structure
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161 Back     information, alignment and structure
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178 Back     information, alignment and structure
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186 Back     information, alignment and structure
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 Back     information, alignment and structure
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171 Back     information, alignment and structure
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159 Back     information, alignment and structure
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169 Back     information, alignment and structure
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155 Back     information, alignment and structure
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Back     information, alignment and structure
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166 Back     information, alignment and structure
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
d1xo7a_166 Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId 100.0
d2rmca_182 Cyclophilin (eukaryotic) {Mouse (Mus musculus), va 100.0
d1h0pa_182 Cyclophilin (eukaryotic) {Caenorhabditis elegans, 100.0
d2igva1172 Cyclophilin (eukaryotic) {Caenorhabditis elegans, 100.0
d2z6wa1164 Mitochondrial peptidyl-prolyl cis-trans isomerase, 100.0
d1qnga_170 Cyclophilin (eukaryotic) {Plasmodium falciparum [T 100.0
d2r99a1161 Mitochondrial peptidyl-prolyl cis-trans isomerase, 100.0
d1a33a_174 Cyclophilin (eukaryotic) {Nematode (Brugia malayi) 100.0
d2cfea1162 Cyclophilin-like allergen Mal s 6 {Malassezia symp 100.0
d1ihga2195 Cyclophilin 40 isomerase domain {Cow (Bos taurus) 100.0
d1qoia_173 Cyclophilin (eukaryotic) {Human (Homo sapiens), U4 100.0
d1z81a1186 Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId 100.0
d2c3ba1171 Cyclophilin (eukaryotic) {Aspergillus fumigatus [T 100.0
d2ok3a1159 Cyclophilin-like protein PPIL3B {Human (Homo sapie 100.0
d1xwna1166 Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 100.0
d1zkca1178 Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop 100.0
d2fu0a1155 Putative cyclophilin PFE0505w {Plasmodium falcipar 100.0
d2b71a1169 Cyclophilin-like protein PY00693 {Plasmodium yoeli 100.0
d1v9ta_166 Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche 100.0
d2a2na1164 Peptidylprolyl isomerase domain and WD repeat-cont 100.0
d1w74a_171 Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob 100.0
d1lopa_164 Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche 100.0
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=2e-46  Score=313.83  Aligned_cols=165  Identities=65%  Similarity=1.152  Sum_probs=152.9

Q ss_pred             CCcCcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCc
Q 024818           89 SKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGK  168 (262)
Q Consensus        89 ~~~~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~  168 (262)
                      |+++++||||+++++   +.+|+|+||||.+.||++|+||++||+++.+.+|+|+.|||+++++++|+|+....++.++.
T Consensus         2 p~~t~~V~~di~i~~---~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~   78 (166)
T d1xo7a_           2 PVVTDKVYFDITIGD---EPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGK   78 (166)
T ss_dssp             CCCCEEEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCC
T ss_pred             CCCCCeEEEEEEECC---EECcEEEEEECCCCChHHHHHHHHhhcccccccccCcEEEEEcCCCEEEeCCCCCCCCCCCC
Confidence            678999999999986   89999999999999999999999999876666699999999999999999998877777777


Q ss_pred             ccCCCCCCCCCCCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCC
Q 024818          169 SIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKK  248 (262)
Q Consensus       169 s~~g~~~~~e~~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~~  248 (262)
                      ..++..++++.....|. +|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|++.+++.+++|.++
T Consensus        79 ~~~~~~~~~~~~~~~~~-~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~~  157 (166)
T d1xo7a_          79 SIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKA  157 (166)
T ss_dssp             BTTBSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSC
T ss_pred             CCCCccccccccccccc-ccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCCC
Confidence            77777777777666665 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeeeee
Q 024818          249 VVISDCGEL  257 (262)
Q Consensus       249 I~I~~cGvL  257 (262)
                      |+|.+||+|
T Consensus       158 i~I~~cgvl  166 (166)
T d1xo7a_         158 VKINDCGVL  166 (166)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEeeEeC
Confidence            999999997
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Back     information, alignment and structure
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Back     information, alignment and structure
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Back     information, alignment and structure
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Back     information, alignment and structure
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Back     information, alignment and structure
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Back     information, alignment and structure
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Back     information, alignment and structure
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure