Citrus Sinensis ID: 024825

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MNIYLPCMFLQVIFMLTVTAKLGCRKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKLNHHSDNHQKGSGINNEYLDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGGFSSSFIPPAAAESNFYYISQNQMNFGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAELDSNFPFDNAGFSF
Secondary Structure (PSIPRED)
cccccccccHHHHHccccccccccccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccHHHHHHHHccccccccccccccccccccEEEEEEcccccccccccHHHccccccccccccccEEEEccccccccccEEEEEEccccccEEEEEEEccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MNIYLPCMFLQVIFMLTVTAklgcrktlprrtdkVKVSFesglegpfedgyswrkygqkdilgakyprsyyrctyrntqncwatkqvqrsdedpstfevtyrgthtcfngsqsvpqpaspekhehklnhhsdnhqkgsginneyldnkeiaspfsfptsslgcmksndycfsslmldennflggfsssfippaaaesnfyyisqnqmnfgdvhnlqqseselpelqsannsvanspilnldfsidaaeldsnfpfdnagfsf
Flexible Loop (DISEMBL)
MNIYLPCMFLQVIFMLTVTAKlgcrktlprrtdkvkvsfesglegpfedgyswrkYGQKDILGAKYPRSYYRCTYRNtqncwatkqvqrsdedPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKLNhhsdnhqkgsGINNEYLDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGGFSSSFIPPAAAESNFYYISQNQMNFGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAELDSNFPFDNAGFSF
Low Complexity Region (SEG)
MNIYLPCMFLQVIFMLTVTAKLGCRKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKLNHHSDNHQKGSGINNEYLDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGGFSSSFIPPAAAESNFYYISQNQMNFGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAELDSNFPFDNAGFSF
Disordered region (IsUnstruct)
**IYLPCMFLQVIFMLTVTAKLGCRKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQV*********FEVTYRGTHTCF*********************************************FSFPTSSLGCMKSNDYCFSSLMLDENNFLGGFSSSFIPPAAAESNFYYISQNQMNFG**************************ILNLDFSID*****************
Disordered Region (DISOPRED)
********************************************GPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCF*****************************************************************************************************************************N*PILNLDFSIDAAELDSNFPFD**GF**
Disordered Region (DISEMBL)
MNIYLPCMFLQVIFMLTVTAKLGCRKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT***********TFEVTYRGTHTCFNG************************QKGSGINNEYLDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGGFSSSFIPPAAAESNFYYISQNQMNFGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAELDSNFPFDNAGFSF
Disordered Region (DISPRO)
*NIYLPCMFLQVIFMLTVTAK***********DKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHT****************************************************************************************************************************SVANSPILNLDFSIDAAELDSNFPFDNA*F**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNIYLPCMFLQVIFMLTVTAKLGCRKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKLNHHSDNHQKGSGINNEYLDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGGFSSSFIPPAAAESNFYYISQNQMNFGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAELDSNFPFDNAGFSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q8H0Y8	313	Probable WRKY transcripti	yes	no	0.717	0.600	0.415	6e-39
Q9SUP6	324	Probable WRKY transcripti	no	no	0.381	0.308	0.69	8e-37
Q9FL62	303	Probable WRKY transcripti	no	no	0.316	0.273	0.590	5e-27
Q9SKD9	295	Probable WRKY transcripti	no	no	0.324	0.288	0.593	1e-23
Q9SHB5	292	WRKY transcription factor	no	no	0.286	0.256	0.56	1e-21
Q9LY00	294	Probable WRKY transcripti	no	no	0.381	0.340	0.457	2e-20
Q93WU8	346	Probable WRKY transcripti	no	no	0.251	0.190	0.575	6e-18
Q9C6H5	241	Probable WRKY transcripti	no	no	0.305	0.331	0.454	6e-16
Q9FH83	1288	Probable WRKY transcripti	no	no	0.270	0.055	0.533	1e-15
Q93WV7	254	Probable WRKY transcripti	no	no	0.278	0.287	0.413	2e-14

>sp|Q8H0Y8|WRK41_ARATH Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2

 Score =  161 bits (407), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 96/231 (41%), Positives = 128/231 (55%), Gaps = 43/231 (18%)

Query: 25  RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
           RK LP+ T++V++S E GLEGP +D +SWRKYGQKDILGAK+PRSYYRCT+RNTQ CWAT
Sbjct: 118 RKMLPKWTEQVRISPERGLEGPHDDIFSWRKYGQKDILGAKFPRSYYRCTFRNTQYCWAT 177

Query: 85  KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKLNHHSDNHQKGSGINNEY 144
           KQVQRSD DP+ FEVTYRGTHTC   SQ +P    PEK E K  H               
Sbjct: 178 KQVQRSDGDPTIFEVTYRGTHTC---SQGIPL---PEKRETKPKH------------TVA 219

Query: 145 LDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGGFSSSFIPPAAAESNFYYISQ 204
           ++ + + +  +  T  LG  ++  +  +S +    +  GG              FY+   
Sbjct: 220 VNYQNLRASLTVRTGGLGS-EAFSFPVTSPLYTYESINGG------------GTFYH--- 263

Query: 205 NQMNFGDVHNLQQSESELPELQSANNSVANSPILNLDFSID-AAELDSNFP 254
                   H      S+   L S N S  +SPI +++F  D  AE+++ FP
Sbjct: 264 --------HVGSSGPSDFTGLISTNTSTGSSPIFDVNFQFDPTAEINTGFP 306

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUP6|WRK53_ARATH Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1

 Score =  154 bits (388), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 69/100 (69%), Positives = 81/100 (81%)

Query: 25  RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
           RK LP+ ++KV++S E GLEGP +D +SWRKYGQKDILGAK+PRSYYRCT+R+TQNCWAT
Sbjct: 135 RKMLPKWSEKVRISPERGLEGPQDDVFSWRKYGQKDILGAKFPRSYYRCTHRSTQNCWAT 194

Query: 85  KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHE 124
           KQVQRSD D + FEVTYRGTHTC       P  ASPEK +
Sbjct: 195 KQVQRSDGDATVFEVTYRGTHTCSQAITRTPPLASPEKRQ 234

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May regulate the early events of leaf senescence. Negatively regulates the expression of ESR/ESP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL62|WRK30_ARATH Probable WRKY transcription factor 30 OS=Arabidopsis thaliana GN=WRKY30 PE=2 SV=1

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 67/83 (80%)

Query: 25  RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
           +K++PR + KV+++  +G++   +DG+SWRKYGQKDILGAK+PR YYRCTYR +Q C AT
Sbjct: 90  KKSMPRWSSKVRIAPGAGVDRTLDDGFSWRKYGQKDILGAKFPRGYYRCTYRKSQGCEAT 149

Query: 85  KQVQRSDEDPSTFEVTYRGTHTC 107
           KQVQRSDE+    E++YRG H+C
Sbjct: 150 KQVQRSDENQMLLEISYRGIHSC 172

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKD9|WRK46_ARATH Probable WRKY transcription factor 46 OS=Arabidopsis thaliana GN=WRKY46 PE=2 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 62/86 (72%), Gaps = 1/86 (1%)

Query: 25  RKTLPRRTDKVKVSFESGLE-GPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWA 83
           RK   + T+KVKV   +  E G  +DG+ WRKYGQK+I G+K PR+YYRCT+R TQ+C A
Sbjct: 80  RKVSEKNTEKVKVFVATEQENGSIDDGHCWRKYGQKEIHGSKNPRAYYRCTHRFTQDCLA 139

Query: 84  TKQVQRSDEDPSTFEVTYRGTHTCFN 109
            KQVQ+SD DPS FEV Y G HTC N
Sbjct: 140 VKQVQKSDTDPSLFEVKYLGNHTCNN 165

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHB5|WRK55_ARATH WRKY transcription factor 55 OS=Arabidopsis thaliana GN=WRKY55 PE=2 SV=1

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 58/75 (77%)

Query: 46  PFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTH 105
           P +D ++WRKYGQK+ILG+++PR+YYRCT++   NC A KQVQR ++DP TF VTYRG+H
Sbjct: 171 PPDDNHTWRKYGQKEILGSRFPRAYYRCTHQKLYNCPAKKQVQRLNDDPFTFRVTYRGSH 230

Query: 106 TCFNGSQSVPQPASP 120
           TC+N +      A+P
Sbjct: 231 TCYNSTAPTASSATP 245

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY00|WRK70_ARATH Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 67/107 (62%), Gaps = 7/107 (6%)

Query: 18  VTAKLGCRKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRN 77
           V  K GC K   R+      + ES +    ED +SWRKYGQK+IL AK+PRSY+RCT++ 
Sbjct: 96  VKGKRGCYK---RKKRSETCTIESTI---LEDAFSWRKYGQKEILNAKFPRSYFRCTHKY 149

Query: 78  TQNCWATKQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHE 124
           TQ C ATKQVQ+ + +P  F +TY G HTC N +   P+  + + H+
Sbjct: 150 TQGCKATKQVQKVELEPKMFSITYIGNHTC-NTNAETPKSKTCDHHD 195

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU8|WRK54_ARATH Probable WRKY transcription factor 54 OS=Arabidopsis thaliana GN=WRKY54 PE=2 SV=2

 Score = 91.3 bits (225), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 49/66 (74%)

Query: 48  EDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTC 107
           ED Y+WRKYGQK+IL   +PRSY+RCT++ TQ C ATKQVQ+ D+D   F++TY G HTC
Sbjct: 152 EDRYAWRKYGQKEILNTTFPRSYFRCTHKPTQGCKATKQVQKQDQDSEMFQITYIGYHTC 211

Query: 108 FNGSQS 113
               Q+
Sbjct: 212 TANDQT 217

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6H5|WRK63_ARATH Probable WRKY transcription factor 63 OS=Arabidopsis thaliana GN=WRKY63 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 8/88 (9%)

Query: 28  LPRRTDKVKVSFESGLE-----GP---FEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQ 79
           +P+R+ K K+    GLE      P    +DG++WRKYGQK I  + Y R YYRC Y   Q
Sbjct: 75  VPQRSSKKKICGVKGLEIYRDDSPNPRLDDGFTWRKYGQKTIKTSLYQRCYYRCAYAKDQ 134

Query: 80  NCWATKQVQRSDEDPSTFEVTYRGTHTC 107
           NC+ATK+VQ   + P  +  TY G HTC
Sbjct: 135 NCYATKRVQMIQDSPPVYRTTYLGQHTC 162

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 4/75 (5%)

Query: 31   RTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRS 90
            R  KV VS  +  EG   D ++WRKYGQKDILG+++PR YYRC Y+ T  C ATKQVQRS
Sbjct: 1195 RVKKV-VSIPAIDEG---DLWTWRKYGQKDILGSRFPRGYYRCAYKFTHGCKATKQVQRS 1250

Query: 91   DEDPSTFEVTYRGTH 105
            + D +   +TY   H
Sbjct: 1251 ETDSNMLAITYLSEH 1265

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV7|WRK67_ARATH Probable WRKY transcription factor 67 OS=Arabidopsis thaliana GN=WRKY67 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 14/87 (16%)

Query: 49  DGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTC- 107
           DG++WRKYGQK I  + + R YYRCTY   QNC ATK+VQ+  ++P  +  TY G H C 
Sbjct: 109 DGFTWRKYGQKTIKASAHKRCYYRCTYAKDQNCNATKRVQKIKDNPPVYRTTYLGKHVCK 168

Query: 108 -------------FNGSQSVPQPASPE 121
                            Q VP+P  P+
Sbjct: 169 AFAVHDDTYSSTMIRFDQVVPEPIMPQ 195

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
224075078	342	predicted protein [Populus trichocarpa]	0.839	0.643	0.570	5e-70
259121407	339	WRKY transcription factor 21 [(Populus t	0.828	0.640	0.570	2e-68
225426000	342	PREDICTED: probable WRKY transcription f	0.858	0.657	0.595	1e-67
171452368	341	WRKY transcription factor [Bruguiera gym	0.843	0.648	0.56	2e-67
255537749	338	hypothetical protein RCOM_1691430 [Ricin	0.828	0.642	0.572	4e-67
356523507	359	PREDICTED: probable WRKY transcription f	0.900	0.657	0.498	2e-64
259121389	338	WRKY transcription factor 12 [(Populus t	0.824	0.639	0.550	7e-64
224053795	338	predicted protein [Populus trichocarpa]	0.824	0.639	0.542	9e-63
356513295	363	PREDICTED: probable WRKY transcription f	0.900	0.650	0.478	1e-60
449464068	355	PREDICTED: probable WRKY transcription f	0.900	0.664	0.504	8e-58

>gi|224075078|ref|XP_002304549.1| predicted protein [Populus trichocarpa] gi|222841981|gb|EEE79528.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (690), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 142/249 (57%), Positives = 167/249 (67%), Gaps = 29/249 (11%)

Query: 25  RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
           RKT PR TD V+VS E+GLEGP +DGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT
Sbjct: 108 RKTTPRWTDHVRVSPENGLEGPHDDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 167

Query: 85  KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKLNHHSD------------ 132
           KQVQRSDEDP+ FE+TYRGTHTC +G+QS+P P+SPEK E K  + ++            
Sbjct: 168 KQVQRSDEDPTIFEITYRGTHTCAHGNQSIPSPSSPEKQEKKQKNTNNNYQQQQSQQALY 227

Query: 133 NHQKGSGINNEYLDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGGFSSSFIPP 192
           N Q    +  E LDNKE+ SPFSFP S+ GC K+               +  +S SFI P
Sbjct: 228 NFQNSLKVITEDLDNKEMVSPFSFP-SAYGCSKN---------------VSSYSPSFISP 271

Query: 193 AAAESNFYYISQNQM-NFGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAELDS 251
           A  E   Y +S  QM NF   +NLQ  ES+  E+ S N S  NSPI++LDFS+D  ELD 
Sbjct: 272 ATPEPTHYSVSPFQMNNFVGAYNLQHLESDFTEIISTNTSATNSPIVDLDFSLDQVELDP 331

Query: 252 NFPFDNAGF 260
           NFPFD  GF
Sbjct: 332 NFPFDTPGF 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121407|gb|ACV92023.1| WRKY transcription factor 21 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/249 (57%), Positives = 165/249 (66%), Gaps = 32/249 (12%)

Query: 25  RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
           RKT PR TD V+VS E+GLEGP +DGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT
Sbjct: 108 RKTTPRWTDHVRVSPENGLEGPHDDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 167

Query: 85  KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKLNHHSD------------ 132
           KQVQRSDEDP+ FE+TYRGTHTC +G+QS+P   SPEK E K  + ++            
Sbjct: 168 KQVQRSDEDPTIFEITYRGTHTCAHGNQSIP---SPEKQEKKQKNTNNNYQQQQSQQALY 224

Query: 133 NHQKGSGINNEYLDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGGFSSSFIPP 192
           N Q    +  E LDNKE+ SPFSFP S+ GC K+               +  +S SFI P
Sbjct: 225 NFQNSLKVITEDLDNKEMVSPFSFP-SAYGCSKN---------------VSSYSPSFISP 268

Query: 193 AAAESNFYYISQNQM-NFGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAELDS 251
           A  E   Y +S  QM NF   HNLQ  ES+  E+ S N S  NSPI++LDFS+D  ELD 
Sbjct: 269 ATPEPTHYSVSPFQMNNFVGAHNLQHLESDFTEIISTNTSATNSPIVDLDFSLDQVELDP 328

Query: 252 NFPFDNAGF 260
           NFPFD  GF
Sbjct: 329 NFPFDTPGF 337

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426000|ref|XP_002272720.1| PREDICTED: probable WRKY transcription factor 41 [Vitis vinifera] gi|297742317|emb|CBI34466.3| unnamed protein product [Vitis vinifera]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 144/242 (59%), Positives = 170/242 (70%), Gaps = 17/242 (7%)

Query: 25  RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
           RKTLP  TD+V+V  E+GLEGP +DGY+WRKYGQKDILGAKYPRSYYRCTYRN  +CWAT
Sbjct: 110 RKTLPTWTDQVRVCSETGLEGPHDDGYNWRKYGQKDILGAKYPRSYYRCTYRNLHDCWAT 169

Query: 85  KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKLNHHSD-NHQKGSGINNE 143
           KQVQRSDEDPS FE+TYRG HTC  GS SVP PASPEK E K NHH+D NHQ+   I N 
Sbjct: 170 KQVQRSDEDPSMFEITYRGKHTCTQGSHSVPAPASPEKQEIKQNHHNDNNHQQQHYIENP 229

Query: 144 YLDNKEIASPFSFPTSSLGCMKSNDYCF---SSLMLDE-NNFLGGFSSSFIPPAAAESNF 199
            L+   +AS      +S GCMKS    F   S+   D  +N LG +S +FI PA ++SN 
Sbjct: 230 -LNYSSMAS------TSYGCMKSETSLFPQPSAFNKDNYDNLLGCYSPTFISPATSDSNC 282

Query: 200 YYISQNQM-NFGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAELDSNFPFDNA 258
           + +S  QM NFG   NLQ SESEL E+ SA    ANSPILNL+F +D  + D +FPF+  
Sbjct: 283 FSLSPCQMSNFGGPPNLQHSESELTEIISA----ANSPILNLEFPLDQVDFDPSFPFNTP 338

Query: 259 GF 260
           GF
Sbjct: 339 GF 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171452368|dbj|BAG15875.1| WRKY transcription factor [Bruguiera gymnorhiza]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 140/250 (56%), Positives = 167/250 (66%), Gaps = 29/250 (11%)

Query: 25  RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
           RKT+PR TD+V+VS E+GLEGP +DGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT
Sbjct: 108 RKTMPRWTDQVRVSSENGLEGPHDDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 167

Query: 85  KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKLNHHS------------D 132
           KQVQRS EDP+ F+VTYRG HTC +G QSVP PASPEK E +  +++             
Sbjct: 168 KQVQRSHEDPTVFDVTYRGAHTCSHGRQSVPAPASPEKLEQEQTNNNYSSQQQQSQQAFP 227

Query: 133 NHQKGSGINNEYLDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGGFSSSFIPP 192
           N  KG  +N + LDNKE+ SPFSFP S+ G +KS               +   S  FI P
Sbjct: 228 NIGKGLSVNTQELDNKELPSPFSFP-SAYGFVKS---------------VSSHSPPFISP 271

Query: 193 AAAESNFYYISQNQMN-FGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAELDS 251
           A  E      S  QM+ FG  ++ Q  ES+ PE+ SAN S  NSPI++LDFS+D  +LD 
Sbjct: 272 ATPEPYHSSFSPFQMDKFGGFNDFQSLESDYPEIISANTSATNSPIVDLDFSLDMVKLDP 331

Query: 252 NFPFDNAGFS 261
           NFPFD  GFS
Sbjct: 332 NFPFDTPGFS 341

Source: Bruguiera gymnorhiza

Species: Bruguiera gymnorhiza

Genus: Bruguiera

Family: Rhizophoraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537749|ref|XP_002509941.1| hypothetical protein RCOM_1691430 [Ricinus communis] gi|223549840|gb|EEF51328.1| hypothetical protein RCOM_1691430 [Ricinus communis]

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 143/250 (57%), Positives = 164/250 (65%), Gaps = 33/250 (13%)

Query: 25  RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
           RKT+PR TD+V+VS E+GLEGP +DGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT
Sbjct: 106 RKTMPRWTDQVRVSSENGLEGPHDDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 165

Query: 85  KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKLNHHSD-----------N 133
           KQVQRSDEDP+ FEVTYRG HTC +G QSVP PASPEK E K N+ ++           N
Sbjct: 166 KQVQRSDEDPTIFEVTYRGIHTCSHGQQSVPTPASPEKQEQKQNNSNNRNQQQPQETLFN 225

Query: 134 HQKGSGINNEYLDNKEIASPFSFPTS--SLGCMKSNDYCFSSLMLDENNFLGGFSSSFIP 191
            QK   +N E LDNK  A PFSFP +  S+G   S                   S SF+ 
Sbjct: 226 FQKNLRVNTEDLDNKNSAFPFSFPPTYESMGAASS-------------------SPSFMS 266

Query: 192 PAAAESNFYYISQNQM-NFGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAELD 250
           PA  E N+Y IS  QM NF  + NL  SES+  E+ S N S  NSPI+  +FS+   ELD
Sbjct: 267 PATPEPNYYSISPFQMNNFSGLQNLHHSESDFTEIISTNTSATNSPIVEPNFSLQPFELD 326

Query: 251 SNFPFDNAGF 260
            NFPFD  GF
Sbjct: 327 PNFPFDTPGF 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523507|ref|XP_003530379.1| PREDICTED: probable WRKY transcription factor 41 [Glycine max]

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/251 (49%), Positives = 169/251 (67%), Gaps = 15/251 (5%)

Query: 25  RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
           RK  P+  D+V+VS ESGLEGP EDGY+WRKYGQKDILGAKYPRSYYRCT+R+TQ CWAT
Sbjct: 107 RKITPKWMDRVRVSCESGLEGPHEDGYNWRKYGQKDILGAKYPRSYYRCTFRSTQGCWAT 166

Query: 85  KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHE-----HKLN-HHSDNHQKGS 138
           KQVQRSDEDP+ F++TYRG HTC  G+ +V  P SPEKHE     H ++ HH+   Q+  
Sbjct: 167 KQVQRSDEDPTMFDITYRGNHTCSQGNNAVLPPKSPEKHEKPAHSHNIDIHHAQASQESL 226

Query: 139 G-------INNEYLDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGG-FSSSFI 190
                   +N + LDN ++A  F+FP++S GCMK +++    L L+ ++FL   + +  +
Sbjct: 227 AKFRSILSVNTDNLDNGDMAYAFTFPSTSFGCMKQDNHSLIPLALENDSFLSDLYQTHLL 286

Query: 191 PPAAAESNFYYISQNQMN-FGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAEL 249
            P   ESN++     QMN F  ++N   S+S++ E+ S N S  NSPI + +FS+D  E+
Sbjct: 287 SPTTPESNYFPSPTFQMNEFDGIYNRSHSKSDINEIISTNTSATNSPIPDFNFSLDPVEI 346

Query: 250 DSNFPFDNAGF 260
           D NFPF+  GF
Sbjct: 347 DPNFPFNTPGF 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121389|gb|ACV92014.1| WRKY transcription factor 12 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  249 bits (637), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 137/249 (55%), Positives = 164/249 (65%), Gaps = 33/249 (13%)

Query: 25  RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
           RK  PR TD+V+VS ++GLEG   DG+SWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT
Sbjct: 108 RKNTPRWTDQVRVSTDNGLEGHHGDGFSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 167

Query: 85  KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKLNHHSD------------ 132
           KQVQRSDEDP+ FE+TYRGTH+C  G+QSVP   SPEK E K  + ++            
Sbjct: 168 KQVQRSDEDPTVFEITYRGTHSCAQGNQSVP---SPEKQEKKQKNTNNNCQQQQSQQALF 224

Query: 133 NHQKGSGINNEYLDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGGFSSSFIPP 192
           N      +N E LDNKE+ SPFSFP+++ GC KS                G F S FI P
Sbjct: 225 NFHNSLRVNTEDLDNKEMVSPFSFPSTN-GCTKSE---------------GSF-SPFISP 267

Query: 193 AAAESNFYYISQNQM-NFGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAELDS 251
           A  E   Y +S  QM NF  V NLQ  ES+  ++ SAN S  NSPI++LDFS+D  +LD 
Sbjct: 268 ATLEPTHYSLSPFQMNNFVGVQNLQHLESDFTDIISANTSATNSPIVDLDFSLDQVDLDP 327

Query: 252 NFPFDNAGF 260
           +FPFD+ GF
Sbjct: 328 DFPFDSPGF 336

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053795|ref|XP_002297983.1| predicted protein [Populus trichocarpa] gi|222845241|gb|EEE82788.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (627), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 135/249 (54%), Positives = 164/249 (65%), Gaps = 33/249 (13%)

Query: 25  RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
           RKT PR TD+V+VS ++GLEG  +DG+SWRKYGQKDILGAKYPRSYYRC+YRNTQNCWAT
Sbjct: 108 RKTTPRWTDQVRVSTDNGLEGHHDDGFSWRKYGQKDILGAKYPRSYYRCSYRNTQNCWAT 167

Query: 85  KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKLNHHSD------------ 132
           KQVQRSDEDP+ FE+TYRGTH+C +G+QSVP   SPEK E K  + ++            
Sbjct: 168 KQVQRSDEDPTVFEITYRGTHSCAHGNQSVP---SPEKQEKKRKNTNNNCQQQQSQQALF 224

Query: 133 NHQKGSGINNEYLDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGGFSSSFIPP 192
           N      +N E  DNKE+  PFSFP+++ GC KS                G F S FI P
Sbjct: 225 NFHNSLRVNTEDFDNKEMVCPFSFPSTN-GCTKSE---------------GSF-SPFISP 267

Query: 193 AAAESNFYYISQNQM-NFGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAELDS 251
           A  E   Y +S  QM NF  V NLQ  ES+  ++ SAN S  NSPI++LDFS+D  EL  
Sbjct: 268 ATPEPTHYSLSPFQMNNFVGVQNLQHLESDFTDIISANTSATNSPIVDLDFSLDQVELVP 327

Query: 252 NFPFDNAGF 260
           +FPFD+ GF
Sbjct: 328 DFPFDSPGF 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513295|ref|XP_003525349.1| PREDICTED: probable WRKY transcription factor 41-like [Glycine max]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/251 (47%), Positives = 161/251 (64%), Gaps = 15/251 (5%)

Query: 25  RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
           RK  P+  D V+VS ESGLEGP ED Y+WRKYGQKDILGAKYPRSYYRCT+RNTQ CWAT
Sbjct: 111 RKATPKWMDHVRVSCESGLEGPHEDSYNWRKYGQKDILGAKYPRSYYRCTFRNTQGCWAT 170

Query: 85  KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEK-----HEHKLNHHSDNHQKGS- 138
           KQVQRSDEDP+ F++TYRG HTC  G+ +V  P SPEK     H H ++ H     + S 
Sbjct: 171 KQVQRSDEDPTVFDITYRGKHTCSQGNNAVLPPKSPEKQEKPTHSHNIDIHRAQASQESL 230

Query: 139 -------GINNEYLDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGG-FSSSFI 190
                   +N + L+N ++A PF+FP++S GCMK +++      L+  +FL   + +  +
Sbjct: 231 TKFRNILSVNTDNLNNGDMAYPFTFPSTSFGCMKQDNHSLIPWALENESFLSDLYQTHLL 290

Query: 191 PPAAAESNFYYISQNQMN-FGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAEL 249
                ESN++     QMN F  +++   SES++ E+ S N S  NSPI + +FS+D  E+
Sbjct: 291 STTIPESNYFPSPTFQMNVFDGIYSKPHSESDINEIISTNTSATNSPIPDFNFSLDPVEI 350

Query: 250 DSNFPFDNAGF 260
           D NFPF+  G 
Sbjct: 351 DPNFPFNTPGL 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464068|ref|XP_004149751.1| PREDICTED: probable WRKY transcription factor 41-like [Cucumis sativus]

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 124/246 (50%), Positives = 158/246 (64%), Gaps = 10/246 (4%)

Query: 25  RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
           RKT PR T++VKV+ E+G EGP EDGYSWRKYGQKDILGA YPRSYYRCT+RNTQNCWA 
Sbjct: 108 RKTQPRWTEQVKVNSETGFEGPHEDGYSWRKYGQKDILGATYPRSYYRCTFRNTQNCWAV 167

Query: 85  KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKL---NHHS-----DNHQK 136
           KQVQRSDEDPS FE+TYRG HTC  G+       SP+K E K    +HH      +N   
Sbjct: 168 KQVQRSDEDPSVFEITYRGKHTCSQGNYLAQTCHSPDKQEQKETDGDHHELQPLQENLFG 227

Query: 137 GSGINN-EYLDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGGFSSSFIPPAAA 195
              I N E L+NK     F   ++S+GC    +  FSSL +D ++ LG F  SF  P + 
Sbjct: 228 NQTIQNIEKLENKASTFCFGSSSTSVGCKDIVNAGFSSLAIDTHSALGTFPQSFTSPTSP 287

Query: 196 ESNFYYISQNQM-NFGDVHNLQQSESELPELQSANNSVANSPILNLDFSIDAAELDSNFP 254
           + N++  S  Q  N G  H++Q  + ++ E+ SAN S  NSPIL+ DF  D+  ++ NFP
Sbjct: 288 DKNYFTPSPCQRSNVGGTHSVQNLDPDVHEIFSANTSATNSPILDWDFPFDSDHINPNFP 347

Query: 255 FDNAGF 260
           F++ GF
Sbjct: 348 FNSQGF 353

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2136093	313	WRKY41 [Arabidopsis thaliana (	0.492	0.412	0.569	1.5e-41
TAIR|locus:2128514	324	WRKY53 [Arabidopsis thaliana (	0.381	0.308	0.69	2.4e-35
TAIR|locus:2167428	303	WRKY30 "WRKY DNA-binding prote	0.774	0.669	0.341	1.5e-28
TAIR|locus:2039119	295	WRKY46 "WRKY DNA-binding prote	0.324	0.288	0.593	2.9e-23
TAIR|locus:2064816	292	WRKY55 "WRKY DNA-binding prote	0.286	0.256	0.56	5.5e-22
TAIR|locus:2102539	294	WRKY70 "WRKY DNA-binding prote	0.706	0.629	0.354	5.5e-22
TAIR|locus:2064806	346	WRKY54 "WRKY DNA-binding prote	0.591	0.447	0.335	4.2e-19
TAIR|locus:2195165	241	ABO3 "ABA overly sensitive mut	0.305	0.331	0.454	1.1e-16
TAIR|locus:2141872	318	WRKY28 "WRKY DNA-binding prote	0.324	0.267	0.455	3.4e-15
TAIR|locus:2065124	337	WRKY23 "WRKY DNA-binding prote	0.351	0.272	0.437	4.5e-15

TAIR|locus:2136093 WRKY41 [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 78/137 (56%), Positives = 97/137 (70%)

Query:    25 RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
             RK LP+ T++V++S E GLEGP +D +SWRKYGQKDILGAK+PRSYYRCT+RNTQ CWAT
Sbjct:   118 RKMLPKWTEQVRISPERGLEGPHDDIFSWRKYGQKDILGAKFPRSYYRCTFRNTQYCWAT 177

Query:    85 KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPE-KHEHKLNHHSDNHQKGSGINNE 143
             KQVQRSD DP+ FEVTYRGTHTC   SQ +P P   E K +H +  +  N +    +   
Sbjct:   178 KQVQRSDGDPTIFEVTYRGTHTC---SQGIPLPEKRETKPKHTVAVNYQNLRASLTVRTG 234

Query:   144 YLDNKEIASPFSFPTSS 160
              L ++     FSFP +S
Sbjct:   235 GLGSEA----FSFPVTS 247

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2128514 WRKY53 [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 69/100 (69%), Positives = 81/100 (81%)

Query:    25 RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
             RK LP+ ++KV++S E GLEGP +D +SWRKYGQKDILGAK+PRSYYRCT+R+TQNCWAT
Sbjct:   135 RKMLPKWSEKVRISPERGLEGPQDDVFSWRKYGQKDILGAKFPRSYYRCTHRSTQNCWAT 194

Query:    85 KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHE 124
             KQVQRSD D + FEVTYRGTHTC       P  ASPEK +
Sbjct:   195 KQVQRSDGDATVFEVTYRGTHTCSQAITRTPPLASPEKRQ 234

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010150 "leaf senescence" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2167428 WRKY30 "WRKY DNA-binding protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 73/214 (34%), Positives = 114/214 (53%)

Query:    25 RKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWAT 84
             +K++PR + KV+++  +G++   +DG+SWRKYGQKDILGAK+PR YYRCTYR +Q C AT
Sbjct:    90 KKSMPRWSSKVRIAPGAGVDRTLDDGFSWRKYGQKDILGAKFPRGYYRCTYRKSQGCEAT 149

Query:    85 KQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKLNHHSDNHQKGSGINNEY 144
             KQVQRSDE+    E++YRG H+C   +             ++   H +       ++N Y
Sbjct:   150 KQVQRSDENQMLLEISYRGIHSCSQAANVGTTMPIQNLEPNQTQEHGNLDMVKESVDN-Y 208

Query:   145 LDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDEN-NFLGGFSSSFIPPAAAESNFYYIS 203
                  +     +P SS   +++N+  +   M D+N  + G  S+SF        N+ + +
Sbjct:   209 NHQAHLHHNLHYPLSSTPNLENNN-AYMLQMRDQNIEYFG--STSFSSDLGTSINYNFPA 265

Query:   204 QNQMNFGDVHNLQQSESELPELQSANNSV-ANSP 236
                 +    H+   S S +P L+S   S   N P
Sbjct:   266 SGSAS----HSASNSPSTVP-LESPFESYDPNHP 294

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

TAIR|locus:2039119 WRKY46 "WRKY DNA-binding protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 51/86 (59%), Positives = 62/86 (72%)

Query:    25 RKTLPRRTDKVKVSFESGLE-GPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWA 83
             RK   + T+KVKV   +  E G  +DG+ WRKYGQK+I G+K PR+YYRCT+R TQ+C A
Sbjct:    80 RKVSEKNTEKVKVFVATEQENGSIDDGHCWRKYGQKEIHGSKNPRAYYRCTHRFTQDCLA 139

Query:    84 TKQVQRSDEDPSTFEVTYRGTHTCFN 109
              KQVQ+SD DPS FEV Y G HTC N
Sbjct:   140 VKQVQKSDTDPSLFEVKYLGNHTCNN 165

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2064816 WRKY55 "WRKY DNA-binding protein 55" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 42/75 (56%), Positives = 58/75 (77%)

Query:    46 PFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTH 105
             P +D ++WRKYGQK+ILG+++PR+YYRCT++   NC A KQVQR ++DP TF VTYRG+H
Sbjct:   171 PPDDNHTWRKYGQKEILGSRFPRAYYRCTHQKLYNCPAKKQVQRLNDDPFTFRVTYRGSH 230

Query:   106 TCFNGSQSVPQPASP 120
             TC+N +      A+P
Sbjct:   231 TCYNSTAPTASSATP 245

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2102539 WRKY70 "WRKY DNA-binding protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 73/206 (35%), Positives = 110/206 (53%)

Query:    18 VTAKLGCRKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRN 77
             V  K GC K   +R++   +  ES +    ED +SWRKYGQK+IL AK+PRSY+RCT++ 
Sbjct:    96 VKGKRGCYKR-KKRSETCTI--ESTI---LEDAFSWRKYGQKEILNAKFPRSYFRCTHKY 149

Query:    78 TQNCWATKQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKLNHHSDNHQKG 137
             TQ C ATKQVQ+ + +P  F +TY G HTC N +   P+  + + H+ ++   S++H K 
Sbjct:   150 TQGCKATKQVQKVELEPKMFSITYIGNHTC-NTNAETPKSKTCDHHD-EIFMDSEDH-KS 206

Query:   138 SGINNEYLDNKEIASPFSFPTSSLGCMKSNDYCFSSLMLDENNFLGGF--SSSFIPPAAA 195
               ++      KE  +P     SS      ND    SL+  E  F   +   +S++    +
Sbjct:   207 PSLSTSM---KEEDNPHRHHGSST----ENDL---SLVWPEMVFEEDYHHQASYVNGKTS 256

Query:   196 ESNFYYISQNQMNFGDVHNLQQSESE 221
              S     SQ+ M FG   + + SE+E
Sbjct:   257 TSIDVLGSQDLMVFGGGGDFEFSENE 282

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;RCA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2064806 WRKY54 "WRKY DNA-binding protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.2e-19, P = 4.2e-19
 Identities = 56/167 (33%), Positives = 84/167 (50%)

Query:    48 EDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTC 107
             ED Y+WRKYGQK+IL   +PRSY+RCT++ TQ C ATKQVQ+ D+D   F++TY G HTC
Sbjct:   152 EDRYAWRKYGQKEILNTTFPRSYFRCTHKPTQGCKATKQVQKQDQDSEMFQITYIGYHTC 211

Query:   108 FNGSQSVPQPASPEKHEHKLNHHSDNHQKGSGINNEYLDNKEIASPFSFPTSSLGCMKSN 167
                 Q+    A  E  + ++   S+     S   N    N  +    +  TSS+  + + 
Sbjct:   212 TANDQT---HAKTEPFDQEIIMDSEKTLAASTAQNHV--NAMVQEQEN-NTSSVTAIDAG 265

Query:   168 DYCFSSLMLDENNFLGGFSSSFIPPAAAESNFYYISQNQMNFGDVHN 214
                   ++ +E N  G  S  +   ++   +   + Q  M F D  N
Sbjct:   266 ------MVKEEQNNNGDQSKDYYEGSSTGEDLSLVWQETMMFDDHQN 306

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2195165 ABO3 "ABA overly sensitive mutant 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 40/88 (45%), Positives = 52/88 (59%)

Query:    28 LPRRTDKVKVSFESGLE-------GP-FEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQ 79
             +P+R+ K K+    GLE        P  +DG++WRKYGQK I  + Y R YYRC Y   Q
Sbjct:    75 VPQRSSKKKICGVKGLEIYRDDSPNPRLDDGFTWRKYGQKTIKTSLYQRCYYRCAYAKDQ 134

Query:    80 NCWATKQVQRSDEDPSTFEVTYRGTHTC 107
             NC+ATK+VQ   + P  +  TY G HTC
Sbjct:   135 NCYATKRVQMIQDSPPVYRTTYLGQHTC 162

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2141872 WRKY28 "WRKY DNA-binding protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 41/90 (45%), Positives = 56/90 (62%)

Query:    18 VTAKLG-CRKTLPRRTDKVKVSFESGLE-GPFEDGYSWRKYGQKDILGAKYPRSYYRCTY 75
             ++ K+G  +KT  ++  + +VSF +  E    EDGY WRKYGQK +  + YPRSYYRCT 
Sbjct:   140 ISKKVGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCT- 198

Query:    76 RNTQNCWATKQVQRSDEDPSTFEVTYRGTH 105
               TQ C   K+V+RS +DP+    TY G H
Sbjct:   199 --TQKCNVKKRVERSFQDPTVVITTYEGQH 226

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2065124 WRKY23 "WRKY DNA-binding protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 4.5e-15, P = 4.5e-15
 Identities = 42/96 (43%), Positives = 56/96 (58%)

Query:    21 KLGCRKTLPRRTDKVKVSFESGLE-GPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQ 79
             +L  +K   +R  + +V+F +  E    EDGY WRKYGQK +  + +PRSYYRCT   T 
Sbjct:   146 QLKAKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCT---TA 202

Query:    80 NCWATKQVQRSDEDPSTFEVTYRGTHTCFNGSQSVP 115
             +C   K+V+RS  DPST   TY G HT  +   S P
Sbjct:   203 SCNVKKRVERSFRDPSTVVTTYEGQHTHISPLTSRP 238

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
smart00774	59	smart00774, WRKY, DNA binding domain	7e-37
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	8e-32

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  124 bits (314), Expect = 7e-37
 Identities = 43/60 (71%), Positives = 46/60 (76%), Gaps = 2/60 (3%)

Query: 48  EDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTC 107
           +DGY WRKYGQK I G+ YPRSYYRCTY  TQ C A KQVQRSD+DPS  EVTY G HT 
Sbjct: 2   DDGYQWRKYGQKVIKGSPYPRSYYRCTY--TQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  111 bits (280), Expect = 8e-32
 Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 3/60 (5%)

Query: 48  EDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTC 107
           +DGY+WRKYGQK + G+ +PRSYYRCT      C   KQV+RS +DP   E+TY G H  
Sbjct: 2   DDGYNWRKYGQKPVKGSPFPRSYYRCTSP---GCPVKKQVERSSDDPQIVEITYEGEHNH 58

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	94.02

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=5.2e-32  Score=199.01  Aligned_cols=59  Identities=69%  Similarity=1.242  Sum_probs=56.8

Q ss_pred             CCCCchhhccCCccccCCCCCCcccccccCcCCCCccccceeecCCCCCeEEEEeccccCC
Q 024825           47 FEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTC  107 (262)
Q Consensus        47 ~dDGy~WRKYGQK~Ikgs~~PRsYYRCt~~~~~gC~A~KqVQrs~~Dp~~~~vtY~G~Htc  107 (262)
                      ++|||+|||||||.|+|+++||+|||||+  .+||+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~--~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTY--SQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccc--cCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999998  479999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=2.7e-32  Score=200.45  Aligned_cols=59  Identities=61%  Similarity=1.091  Sum_probs=52.3

Q ss_pred             CCCCchhhccCCccccCCCCCCcccccccCcCCCCccccceeecCCCCCeEEEEeccccCCC
Q 024825           47 FEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCF  108 (262)
Q Consensus        47 ~dDGy~WRKYGQK~Ikgs~~PRsYYRCt~~~~~gC~A~KqVQrs~~Dp~~~~vtY~G~Htc~  108 (262)
                      ++|||+|||||||.|+|+++||+||||++.   +|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~---~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP---GCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECT---TEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeecccc---ChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            589999999999999999999999999996   99999999999999999999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.02  E-value=0.031  Score=38.79  Aligned_cols=52  Identities=23%  Similarity=0.451  Sum_probs=26.9

Q ss_pred             CCCCCchhhccCCccccCCCCCCcccccccCcCCCCccccceeecCCCCCeEEEEeccccCC
Q 024825           46 PFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTC  107 (262)
Q Consensus        46 ~~dDGy~WRKYGQK~Ikgs~~PRsYYRCt~~~~~gC~A~KqVQrs~~Dp~~~~vtY~G~Htc  107 (262)
                      ..-|||.-++...+      ..+.|+||+.+...+|+|+=.+.  + +...+ +...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~-~~~~~-~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--A-GDGRV-VRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE-----TTEE-EE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--C-CCCEE-EECCCccCC
Confidence            35588877765554      34689999998778999976665  2 23333 334489997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	262
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		1e-11
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		7e-11

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 47  FEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTH 105
            +DGY WRKYGQK + G  YPRSYY+CT   T  C   K V+R+  DP     TY G H
Sbjct: 17  LDDGYRWRKYGQKVVKGNPYPRSYYKCT---TPGCGVRKHVERAATDPKAVVTTYEGKH 72

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 49  DGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTH 105
           DGY WRKYGQK + G+ YPRSYYRC+   +  C   K V+RS  D      TY G H
Sbjct: 16  DGYRWRKYGQKSVKGSPYPRSYYRCS---SPGCPVKKHVERSSHDTKLLITTYEGKH 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	3e-28
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	4e-28
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  102 bits (255), Expect = 3e-28
 Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 36  KVSFESGLEGPF-EDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDP 94
           ++   +        DGY WRKYGQK + G+ YPRSYYRC+      C   K V+RS  D 
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS---PGCPVKKHVERSSHDT 58

Query: 95  STFEVTYRGTHTC 107
                TY G H  
Sbjct: 59  KLLITTYEGKHDH 71

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  101 bits (254), Expect = 4e-28
 Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 48  EDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTC 107
           +DGY WRKYGQK + G  YPRSYY+CT      C   K V+R+  DP     TY G H  
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTP---GCGVRKHVERAATDPKAVVTTYEGKHNH 74

Query: 108 FNGSQSVPQPA 118
                    PA
Sbjct: 75  -------DLPA 78

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 6e-05
 Identities = 26/186 (13%), Positives = 53/186 (28%), Gaps = 37/186 (19%)

Query: 82  WATKQVQRSDEDPSTFEVTYRGTHT-CFNGSQSVPQ-PASPEKHEHKLNHH--SDNHQK- 136
           +    ++     PS     Y       +N +Q   +   S  +   KL          K 
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 137 -------GSG---INNEYLDNKEIASPFSFPTS--SLGCMKSNDYCFSSLMLDENNFLGG 184
                  GSG   +  +   + ++     F     +L    S +    +++      L  
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE----TVLEMLQKLLYQ 208

Query: 185 FSSSFIPPAAAESNFYYISQNQMNFGDVHNLQQSESELPELQSANNS------VANSPIL 238
              ++   +   SN             +H++Q     L + +   N       V N+   
Sbjct: 209 IDPNWTSRSDHSSNIKL---------RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 239 N-LDFS 243
           N  + S
Sbjct: 260 NAFNLS 265

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.97
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.97

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.97  E-value=2.9e-33  Score=213.69  Aligned_cols=65  Identities=45%  Similarity=0.818  Sum_probs=61.1

Q ss_pred             CCCCCCCchhhccCCccccCCCCCCcccccccCcCCCCccccceeecCCCCCeEEEEeccccCCCCCC
Q 024825           44 EGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCFNGS  111 (262)
Q Consensus        44 e~~~dDGy~WRKYGQK~Ikgs~~PRsYYRCt~~~~~gC~A~KqVQrs~~Dp~~~~vtY~G~Htc~~~~  111 (262)
                      .++++|||+|||||||.|+|++|||+|||||+   +||+|+|+|||+++|+.+++|||+|+|||+.+.
T Consensus        11 ~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A           11 FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS---PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             SSCCCCSSCEEEEEEECCTTCSSCEEEEEECS---TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CCcCCCCchhhhCcccccCCCCCceeEeEcCC---CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            36899999999999999999999999999997   499999999999999999999999999998653

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.97  E-value=6.3e-33  Score=212.75  Aligned_cols=63  Identities=46%  Similarity=0.886  Sum_probs=60.4

Q ss_pred             CCCCCCchhhccCCccccCCCCCCcccccccCcCCCCccccceeecCCCCCeEEEEeccccCCCCC
Q 024825           45 GPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCFNG  110 (262)
Q Consensus        45 ~~~dDGy~WRKYGQK~Ikgs~~PRsYYRCt~~~~~gC~A~KqVQrs~~Dp~~~~vtY~G~Htc~~~  110 (262)
                      ++++|||+|||||||.|+|++|||+|||||+   +||+|+|+|||+++|+.+++|||+|+|||+.+
T Consensus        15 ~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           15 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             CCCCSSSCBCCCEEECCTTCSSCEEEEEEEC---SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CcCCCCchhhhCcccccCCCcCeeEEeecCc---CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            6799999999999999999999999999998   59999999999999999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	7e-28

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 99.9 bits (249), Expect = 7e-28
 Identities = 31/74 (41%), Positives = 36/74 (48%), Gaps = 10/74 (13%)

Query: 45  GPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGT 104
              +DGY WRKYGQK + G  YPRSYY+CT      C   K V+R+  DP     TY G 
Sbjct: 8   DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGK 64

Query: 105 HTCFNGSQSVPQPA 118
           H           PA
Sbjct: 65  HNH-------DLPA 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.97

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.7e-33  Score=210.81  Aligned_cols=64  Identities=45%  Similarity=0.878  Sum_probs=60.5

Q ss_pred             CCCCCCchhhccCCccccCCCCCCcccccccCcCCCCccccceeecCCCCCeEEEEeccccCCCCCC
Q 024825           45 GPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCFNGS  111 (262)
Q Consensus        45 ~~~dDGy~WRKYGQK~Ikgs~~PRsYYRCt~~~~~gC~A~KqVQrs~~Dp~~~~vtY~G~Htc~~~~  111 (262)
                      +++||||+|||||||.|+|+++||+||||++   +||+|+|+|||+++|+.+++|||+|+|||+.++
T Consensus         8 ~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~---~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           8 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCSSSCBCCCEEECCTTCSSCEEEEEEEC---SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccCCCCcEecccCceeccCCCCceEEEEccc---cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            6799999999999999999999999999998   499999999999999999999999999997653