Citrus Sinensis ID: 024836

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MECSCLHGSFLPILPFHKTVISPNCHNFPSNSTTRRRFPSKFTVNCTERTGENASTPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLESILDAPYDTSAEAELLYSLIVKARFENNRYQKPKKKPKTSSQHVDWF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccEEEccEEEccccccHHHHHcccccEEEEcccccEEEEEcccccHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccEccc
Coil and Loop (DISEMBL)
mecsclhgsflpilpfhktvispnchnfpsnsttrrrfpskftvnctertgenastppstssayailgvepscsAAELKAAFRAKVKqyhpdvnrdgrdsDALIRRIIQAYEILTEysrleiierecidpfdypeceaLDVFVNEVLcvgkgcpyscvktapnafsyssstgTARAISQGHGQDYRVQLAvgqcprscihyvtpsQRIILEELLESildapydtsAEAELLYSLIVKARfennryqkpkkkpktssqhvdwf
Flexible Loop (DISEMBL)
MECSCLHGSFLPILPFHKTVISPNCHNfpsnsttrrrfpSKFTVNCtertgenastppsTSSAYAILGVEPSCSAAELKAAFRAKVkqyhpdvnrdgrdsdaLIRRIIQAYeilteysrleIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLESILDAPYDTSAEAELLYSLIVKARfennryqkpkkkpktssqhvdwf
Low Complexity Region (SEG)
MECSCLHGSFLPILPFHKTVISPNCHNFPSNSTTRRRFPSKFTVNCTERTGENastppstssaYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRiileellesilDAPYDTSAEAELLYSLIVKARFENNRYQkpkkkpkTSSQHVDWF
Disordered region (IsUnstruct)
***SCLHGSFLPILPFHKTVISPNCHNF***********************************YAILGVEPSCSAAELKAAFRAKVKQYHPDV*****DSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSS**GTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLESILDAPYDTSAEAELLYSLIVKARFE*********************
Disordered Region (DISOPRED)
*************LPFH**V*****************************************SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYS**KT***********************DYRVQLAVGQCPRSCIHYVTPSQRIILEELLESILDAPY**SAEAELLYSLIVK*********************VDWF
Disordered Region (DISEMBL)
MECSCLHGSFLPILPFHKTVISPNCHNFPSNSTTRRRFPSKFTVNCT*************SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLESILDAPYDTSAEAELLYSLIVKARFENNRY*****************
Disordered Region (DISPRO)
*ECSCLHGSFLPILPFHKTVISPNCH******TTRRRFPSKFTVNCT*************SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLESILDAPYDTSAEAELLYSLIVKARFENNR******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MECSCLHGSFLPILPFHKTVISPNCHNFPSNSTTRRRFPSKFTVNCTERTGENASTPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLESILDAPYDTSAEAELLYSLIVKARFENNRYQKPKKKPKTSSQHVDWF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q5LWJ5	381	Chaperone protein DnaJ OS	yes	no	0.236	0.162	0.387	1e-07
P29944	171	Uncharacterized 19.0 kDa	N/A	no	0.366	0.561	0.302	5e-07
A3DF24	386	Chaperone protein DnaJ OS	yes	no	0.202	0.137	0.452	1e-06
B8I304	379	Chaperone protein DnaJ OS	yes	no	0.255	0.176	0.4	2e-06
A1B4F0	384	Chaperone protein DnaJ OS	yes	no	0.236	0.161	0.419	2e-06
P50026	287	Chaperone protein DnaJ OS	no	no	0.320	0.292	0.347	2e-06
B1ZUS0	382	Chaperone protein DnaJ OS	yes	no	0.202	0.138	0.415	3e-06
Q6L0S6	357	Chaperone protein DnaJ OS	yes	no	0.202	0.148	0.415	3e-06
A0AIS3	376	Chaperone protein DnaJ OS	yes	no	0.251	0.175	0.382	3e-06
A7NS65	370	Chaperone protein DnaJ OS	yes	no	0.232	0.164	0.403	3e-06

>sp|Q5LWJ5|DNAJ_RUEPO Chaperone protein DnaJ OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=dnaJ PE=3 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y +LGV    SA E+K A+R K K+ HPD N+D  D+++L + + +AYE+L +  +    
Sbjct: 7   YDVLGVSKGASADEIKKAYRGKAKELHPDRNKDNPDAESLFKEVNEAYEVLKDAEKKAAY 66

Query: 124 ER 125
           +R
Sbjct: 67  DR 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (taxid: 246200)

>sp|P29944|YCB2_PSEDE Uncharacterized 19.0 kDa protein in cobS 5'region OS=Pseudomonas denitrificans PE=4 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 21  ISPNCHNFPSNSTTRR---------RFPSKFTVNCTERTGE----NASTPPSTSSAYAIL 67
           ++ N  N P+ S TR          R P  F      R+G             + A+  L
Sbjct: 59  VNKNAKNGPTQSQTRSGSAGAQARMRDPFGFVSEARARSGRPEPRQRKLKTLEAKAFETL 118

Query: 68  GVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           G+  S + A++KAA++  VK++HPD N   R S+   R +IQAY++L +
Sbjct: 119 GLGASATTADIKAAYKDLVKKHHPDANGGDRGSEERFRAVIQAYQLLKQ 167

Pseudomonas denitrificans (taxid: 43306)

>sp|A3DF24|DNAJ_CLOTH Chaperone protein DnaJ OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaJ PE=3 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 36/53 (67%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV+   S AE+K A+R   KQYHPD+N   + ++A  + I +AYE+L++
Sbjct: 8   YEILGVDRGASDAEIKKAYRKLAKQYHPDMNPGDKAAEAKFKEINEAYEVLSD 60

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119)

>sp|B8I304|DNAJ_CLOCE Chaperone protein DnaJ OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=dnaJ PE=3 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE---YSRL 120
           Y +LGV+ + S AELK A+R   K+YHPDVN     ++A  + + +AYEIL++    SR 
Sbjct: 8   YEVLGVDKNASDAELKKAYRNLAKKYHPDVNPGDTTAEAKFKEVNEAYEILSDSQKRSRY 67

Query: 121 EIIERECIDP 130
           +       DP
Sbjct: 68  DQFGHAGTDP 77

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) (taxid: 394503)

>sp|A1B4F0|DNAJ_PARDP Chaperone protein DnaJ OS=Paracoccus denitrificans (strain Pd 1222) GN=dnaJ PE=3 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y +LGV    SA E+K A+RAK KQ HPD N+D + S+A  + + +AYE L +  +    
Sbjct: 7   YEVLGVARGASADEIKKAYRAKAKQLHPDRNKDCKVSEAAFKEVNEAYECLKDDQKKAAY 66

Query: 124 ER 125
           +R
Sbjct: 67  DR 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Paracoccus denitrificans (strain Pd 1222) (taxid: 318586)

>sp|P50026|DNAJ_SYNE7 Chaperone protein DnaJ OS=Synechococcus elongatus (strain PCC 7942) GN=dnaJ PE=3 SV=2

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 11/95 (11%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT------EY 117
           YA+LG+  S   A +KAAFR   +Q HPD+N   R ++   ++I +AYEIL+      EY
Sbjct: 8   YALLGIPQSADQAAIKAAFRKLARQCHPDLNPGDRQAEERFKQISEAYEILSDPDRRAEY 67

Query: 118 SRLEIIERE-----CIDPFDYPECEALDVFVNEVL 147
            R     ++          DY +    D+FV+E+L
Sbjct: 68  QRFSRYWQQQGAASVGSDDDYGDFPDFDIFVDELL 102

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|B1ZUS0|DNAJ_OPITP Chaperone protein DnaJ OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=dnaJ PE=3 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y +LGV+   S  ELK A+R K  QYHPD N   ++++ + ++I  AYE+L +
Sbjct: 7   YELLGVQKGASEEELKKAYRKKAVQYHPDKNPGNKEAEEMFKKISHAYEVLKD 59

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Opitutus terrae (strain DSM 11246 / PB90-1) (taxid: 452637)

>sp|Q6L0S6|DNAJ_PICTO Chaperone protein DnaJ OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=dnaJ PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 36/53 (67%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           YAILGV+ + S  ++K AFR   K+YHPD N   ++++   + I +AYE+L++
Sbjct: 6   YAILGVDRNASQDDIKKAFRELAKKYHPDANPGNKEAEEKFKEIAEAYEVLSD 58

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) (taxid: 263820)

>sp|A0AIS3|DNAJ_LISW6 Chaperone protein DnaJ OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dnaJ PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE-YSRLEI 122
           Y +LG+  S SA E+K A+R   KQYHPD+N++   +D   + I +AYE+L++   R + 
Sbjct: 7   YEVLGISKSASADEIKKAYRKLSKQYHPDINKEA-GADEKFKEISEAYEVLSDSQKRAQY 65

Query: 123 IERECIDP 130
            +   +DP
Sbjct: 66  DQYGHVDP 73

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) (taxid: 386043)

>sp|A7NS65|DNAJ_ROSCS Chaperone protein DnaJ OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=dnaJ PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y +LGV+ + S  E+K AFR   +QYHPDVN+   D++A  + I +AYE+L++  +  + 
Sbjct: 8   YEVLGVQRNASQDEIKKAFRRLARQYHPDVNK-APDAEAKFKEINEAYEVLSDPEKRSMY 66

Query: 124 ER 125
           +R
Sbjct: 67  DR 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Roseiflexus castenholzii (strain DSM 13941 / HLO8) (taxid: 383372)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
255542634	736	pentatricopeptide repeat-containing prot	0.927	0.330	0.742	1e-106
224125242	266	predicted protein [Populus trichocarpa]	0.992	0.977	0.708	1e-102
359487742	265	PREDICTED: uncharacterized protein LOC10	0.992	0.981	0.714	1e-102
147798217	322	hypothetical protein VITISV_018290 [Viti	0.977	0.795	0.709	3e-99
449482847	833	PREDICTED: putative pentatricopeptide re	0.900	0.283	0.670	8e-95
449442815	838	PREDICTED: pentatricopeptide repeat-cont	0.900	0.281	0.670	1e-94
238479656	244	DnaJ domain-containing protein [Arabidop	0.866	0.930	0.719	8e-91
357512005	251	Chaperone protein dnaJ [Medicago truncat	0.900	0.940	0.680	7e-90
356504050	753	PREDICTED: pentatricopeptide repeat-cont	0.885	0.308	0.661	6e-88
388492320	253	unknown [Lotus japonicus]	0.828	0.857	0.707	2e-86

>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/252 (74%), Positives = 217/252 (86%), Gaps = 9/252 (3%)

Query: 18  KTVISPNCHNFPSNSTTRR--RFPS----KFTVNCTERTGENASTPPSTSSA-YAILGVE 70
           K+V  PN HN  SN  +R   RFPS    KFTVNC+ER G++  TP S+SSA + +LGV+
Sbjct: 487 KSVTYPNGHNLFSNFNSRNPLRFPSHSNSKFTVNCSERIGDD--TPLSSSSAAHMVLGVD 544

Query: 71  PSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130
           P CSAAELKAAFRAKVKQ+HPDVNRD +  D +IRR+IQAYEIL+ +SR EIIE EC+DP
Sbjct: 545 PGCSAAELKAAFRAKVKQFHPDVNRDRKFPDTMIRRVIQAYEILSNFSRSEIIESECLDP 604

Query: 131 FDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLA 190
           FD PECEA D+FVNEVLC GKGCPYSCV+TAP+AF+Y+SSTGTARAISQGHG+DY+VQLA
Sbjct: 605 FDNPECEAFDIFVNEVLCAGKGCPYSCVQTAPHAFAYASSTGTARAISQGHGEDYKVQLA 664

Query: 191 VGQCPRSCIHYVTPSQRIILEELLESILDAPYDTSAEAELLYSLIVKARFENNRYQKPKK 250
           VGQCPRSCIHYVTPSQRIILEELL+SIL  PYD SAEA++LYSLIVKA +ENNRYQKPKK
Sbjct: 665 VGQCPRSCIHYVTPSQRIILEELLDSILGVPYDNSAEADMLYSLIVKATYENNRYQKPKK 724

Query: 251 KPKTSSQHVDWF 262
           +PKTS+QHV+WF
Sbjct: 725 QPKTSTQHVEWF 736

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125242|ref|XP_002319537.1| predicted protein [Populus trichocarpa] gi|222857913|gb|EEE95460.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/268 (70%), Positives = 225/268 (83%), Gaps = 8/268 (2%)

Query: 1   MECSCLHGSFLPILPFHKTVISPN-CHNFPSNSTTRRRFPS-----KFTVNCTERTGENA 54
           ME  C + S  PI PF KTV +PN CHNFPS +   R FPS     KF  +C  R  E+ 
Sbjct: 1   MESLCFYSSLPPIPPFQKTVTNPNNCHNFPSKTIPIRLFPSLSTSSKFKPHCLGRAEED- 59

Query: 55  STPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
            +P STSSAY +LG++P CSAA +KAAFRAKVKQ+HPD+N+DG+ SD +IRR+IQAYE+L
Sbjct: 60  -SPLSTSSAYTVLGIKPGCSAAAIKAAFRAKVKQFHPDLNKDGKVSDLMIRRVIQAYEML 118

Query: 115 TEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTA 174
           + +SR EIIEREC+DPF+ PECEA D+FVNEVLCVGKGCPYSCV+ AP AF+Y+SSTGTA
Sbjct: 119 SNFSRPEIIERECLDPFEEPECEAFDIFVNEVLCVGKGCPYSCVQRAPYAFTYASSTGTA 178

Query: 175 RAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLESILDAPYDTSAEAELLYSL 234
           RA SQGHG+DY+VQLAVGQCPRSCIHYVTPSQRIILEELL+SIL+ PYD SAEA+LLYSL
Sbjct: 179 RATSQGHGEDYQVQLAVGQCPRSCIHYVTPSQRIILEELLDSILEVPYDCSAEADLLYSL 238

Query: 235 IVKARFENNRYQKPKKKPKTSSQHVDWF 262
           IVKARFENNR++KPKK+PKTS++HVDWF
Sbjct: 239 IVKARFENNRFRKPKKQPKTSTEHVDWF 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487742|ref|XP_002280795.2| PREDICTED: uncharacterized protein LOC100263014 [Vitis vinifera] gi|296088328|emb|CBI36773.3| unnamed protein product [Vitis vinifera]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/266 (71%), Positives = 216/266 (81%), Gaps = 6/266 (2%)

Query: 1   MECSCLHGSFLPILPFHKTVISPNCHNFPSNSTTRRRFPSKFT----VNCTERTGENAST 56
           M C  L+ S LPI    K+V + N  NFP+   T   F S  T    VNC +RTGE    
Sbjct: 2   MGCLVLYNSTLPINTVSKSVTNLNGFNFPATFKTSLSFSSSSTSRFTVNCRDRTGEEPKL 61

Query: 57  PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
             S SSAYA+LGV+PSCSA ELKAAFRAKVKQ+HPDVN++G DSD +IR +IQAYE+L+ 
Sbjct: 62  --SDSSAYAVLGVDPSCSAPELKAAFRAKVKQFHPDVNKEGGDSDKMIRLVIQAYELLSC 119

Query: 117 YSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARA 176
            SR EIIEREC+DPFD PECEA D+FVNEVLCVGKGCPYSCV  AP+AF++ SSTGTARA
Sbjct: 120 CSRSEIIERECLDPFDEPECEAFDLFVNEVLCVGKGCPYSCVNKAPHAFTFVSSTGTARA 179

Query: 177 ISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLESILDAPYDTSAEAELLYSLIV 236
            SQGHG+DY+VQLAVGQCPRSCIHYVTPSQRI+LEELL+SILD PYDTSAEA+LLYSLIV
Sbjct: 180 TSQGHGEDYQVQLAVGQCPRSCIHYVTPSQRIVLEELLDSILDTPYDTSAEADLLYSLIV 239

Query: 237 KARFENNRYQKPKKKPKTSSQHVDWF 262
           KARFENNRYQKPK +PK S+QHVDWF
Sbjct: 240 KARFENNRYQKPKNQPKGSTQHVDWF 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798217|emb|CAN60541.1| hypothetical protein VITISV_018290 [Vitis vinifera]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 186/262 (70%), Positives = 212/262 (80%), Gaps = 6/262 (2%)

Query: 1   MECSCLHGSFLPILPFHKTVISPNCHNFPSNSTTRRRFPSKFT----VNCTERTGENAST 56
           M C  L+ S LPI    K+V + N  NFP+   T   F S  T    VNC +RTGE    
Sbjct: 1   MGCLVLYNSTLPINTVSKSVTNLNGFNFPATFKTSLSFSSSSTSRFTVNCRDRTGEEPKL 60

Query: 57  PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
             S SSAYA+LGV+PSCSAAELKAAFRAKVKQ+HPDVN++G DSD +IR +IQAYE+L+ 
Sbjct: 61  --SDSSAYAVLGVDPSCSAAELKAAFRAKVKQFHPDVNKEGGDSDKMIRLVIQAYELLSC 118

Query: 117 YSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARA 176
            SR EIIEREC+DPFD PECEA D+FVNEVLCVG GCPYSCV  AP+AF++ SSTGTARA
Sbjct: 119 CSRSEIIERECLDPFDEPECEAFDLFVNEVLCVGNGCPYSCVNKAPHAFTFVSSTGTARA 178

Query: 177 ISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLESILDAPYDTSAEAELLYSLIV 236
            SQGHG+DY+VQLAVGQCPRSCIHYVTPSQRI+LEELL+SILD PYDTSAEA+LLYSLIV
Sbjct: 179 TSQGHGEDYQVQLAVGQCPRSCIHYVTPSQRIVLEELLDSILDTPYDTSAEADLLYSLIV 238

Query: 237 KARFENNRYQKPKKKPKTSSQH 258
           KARFENNRYQKPK +PK S+QH
Sbjct: 239 KARFENNRYQKPKNQPKGSTQH 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449482847|ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930-like [Cucumis sativus]

 Score =  352 bits (903), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 161/240 (67%), Positives = 199/240 (82%), Gaps = 4/240 (1%)

Query: 27  NFPSNSTTRRRFPS----KFTVNCTERTGENASTPPSTSSAYAILGVEPSCSAAELKAAF 82
           NFPS S +   FPS    +FT  C +RT    +      +AY +LG++P+CS +ELKAAF
Sbjct: 594 NFPSISKSSILFPSSSTSRFTPICRQRTEGEDTLLSGPMAAYRLLGLDPTCSESELKAAF 653

Query: 83  RAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVF 142
           RAKVKQ+HPDVNR+G DSD++IRR+IQAYE+L+ YSR E IEREC+DPF+ PECEA DVF
Sbjct: 654 RAKVKQFHPDVNRNGNDSDSMIRRVIQAYEMLSSYSRTEFIERECLDPFENPECEAFDVF 713

Query: 143 VNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYV 202
           VNE LCVGKGCPYSCV  AP+ F+++SSTGTARA+SQGH +DY++Q+AVGQCPRSCIHYV
Sbjct: 714 VNEFLCVGKGCPYSCVDRAPHVFTFASSTGTARAMSQGHSEDYQLQMAVGQCPRSCIHYV 773

Query: 203 TPSQRIILEELLESILDAPYDTSAEAELLYSLIVKARFENNRYQKPKKKPKTSSQHVDWF 262
           TP QRIILEELL+S LD PYD SAEA+LLYSLIVK++FENNRY+KPK++PK S++ VDW+
Sbjct: 774 TPLQRIILEELLDSALDVPYDNSAEADLLYSLIVKSKFENNRYKKPKREPKNSTEQVDWY 833

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442815|ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340-like [Cucumis sativus]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 161/240 (67%), Positives = 199/240 (82%), Gaps = 4/240 (1%)

Query: 27  NFPSNSTTRRRFPS----KFTVNCTERTGENASTPPSTSSAYAILGVEPSCSAAELKAAF 82
           NFPS S +   FPS    +FT  C +RT    +      +AY +LG++P+CS +ELKAAF
Sbjct: 599 NFPSISKSSILFPSSSTSRFTPICRQRTEGEDTLLSGPMAAYRLLGLDPTCSESELKAAF 658

Query: 83  RAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVF 142
           RAKVKQ+HPDVNR+G DSD++IRR+IQAYE+L+ YSR E IEREC+DPF+ PECEA DVF
Sbjct: 659 RAKVKQFHPDVNRNGNDSDSMIRRVIQAYEMLSSYSRTEFIERECLDPFENPECEAFDVF 718

Query: 143 VNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYV 202
           VNE LCVGKGCPYSCV  AP+ F+++SSTGTARA+SQGH +DY++Q+AVGQCPRSCIHYV
Sbjct: 719 VNEFLCVGKGCPYSCVDRAPHVFTFASSTGTARAMSQGHSEDYQLQMAVGQCPRSCIHYV 778

Query: 203 TPSQRIILEELLESILDAPYDTSAEAELLYSLIVKARFENNRYQKPKKKPKTSSQHVDWF 262
           TP QRIILEELL+S LD PYD SAEA+LLYSLIVK++FENNRY+KPK++PK S++ VDW+
Sbjct: 779 TPLQRIILEELLDSALDVPYDNSAEADLLYSLIVKSKFENNRYKKPKREPKNSTEQVDWY 838

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479656|ref|NP_001154591.1| DnaJ domain-containing protein [Arabidopsis thaliana] gi|332640701|gb|AEE74222.1| DnaJ domain-containing protein [Arabidopsis thaliana]

 Score =  339 bits (869), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 167/232 (71%), Positives = 194/232 (83%), Gaps = 5/232 (2%)

Query: 32  STTRRRFPSKFTVNCTERTGENASTPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHP 91
           S +R     +F  +C    G+N   P S+SS Y+ILGVEPSCS++ELKAAFRAKVKQYHP
Sbjct: 17  SNSRYSTSQRFIPSCR---GKNREDPLSSSSPYSILGVEPSCSSSELKAAFRAKVKQYHP 73

Query: 92  DVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGK 151
           DVN+DG +SD +IRRIIQAYE+LT YSR EIIE EC+DPFD+PECEALDVFVNEVLCVGK
Sbjct: 74  DVNKDGSNSDIMIRRIIQAYEMLTNYSRSEIIEGECLDPFDHPECEALDVFVNEVLCVGK 133

Query: 152 GCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILE 211
            C Y C +TA + FS  SS GTARA+SQGHG+DYRVQ AV QCPR+CIHYVTPSQRIILE
Sbjct: 134 RCSYPCFETASHVFSCDSS-GTARAMSQGHGEDYRVQSAVNQCPRNCIHYVTPSQRIILE 192

Query: 212 ELLESILDAPYDTSAEAELLYSLIVKARFENNRYQKPKKK-PKTSSQHVDWF 262
           ELL+S++D PYD SAEAE LY+LIVKA+FENNRYQKPKKK P++S +HVDWF
Sbjct: 193 ELLDSVVDKPYDCSAEAEFLYALIVKAKFENNRYQKPKKKQPESSGKHVDWF 244

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512005|ref|XP_003626291.1| Chaperone protein dnaJ [Medicago truncatula] gi|355501306|gb|AES82509.1| Chaperone protein dnaJ [Medicago truncatula]

 Score =  336 bits (861), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 166/244 (68%), Positives = 194/244 (79%), Gaps = 8/244 (3%)

Query: 27  NFPSNSTT----RRRFPSKFTVNCTERTG--ENASTPPSTSSAYAILGVEPSCSAAELKA 80
           NF   +TT     R FP   ++    RT        P STSSAYA+LGV+P CSAAE+KA
Sbjct: 8   NFNLTTTTSMFVNRTFPLSVSLKNKTRTNCRGREDGPLSTSSAYAVLGVQPDCSAAEIKA 67

Query: 81  AFRAKVKQYHPDVNRDGRD--SDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEA 138
           AFR+KVKQ+HPD+NRD  +  SD +IRR+IQAY+IL+ Y+  +IIE EC+DPF  PECEA
Sbjct: 68  AFRSKVKQFHPDLNRDENETYSDVMIRRVIQAYQILSNYTPSQIIETECLDPFGRPECEA 127

Query: 139 LDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSC 198
            D+FVNE LCVGK C  SCV+ AP+AF++ SSTGTARA SQGHG+DY+VQ AVGQCPRSC
Sbjct: 128 FDLFVNEFLCVGKACSNSCVERAPHAFTFVSSTGTARASSQGHGEDYQVQCAVGQCPRSC 187

Query: 199 IHYVTPSQRIILEELLESILDAPYDTSAEAELLYSLIVKARFENNRYQKPKKKPKTSSQH 258
           IHYVTPSQRIILEELL SI+DAPYDTSAEA+LLYSLI KA+FENNRYQKPKKK K S+QH
Sbjct: 188 IHYVTPSQRIILEELLNSIIDAPYDTSAEADLLYSLITKAKFENNRYQKPKKKTKFSTQH 247

Query: 259 VDWF 262
           VDWF
Sbjct: 248 VDWF 251

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504050|ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340-like [Glycine max]

 Score =  329 bits (844), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 158/239 (66%), Positives = 193/239 (80%), Gaps = 7/239 (2%)

Query: 28  FPSNSTTRRRFPSKFT-VNCTERTGENASTPPSTSSAYAILGVEPSCSAAELKAAFRAKV 86
            P  S +  +F  K    +C+ R  +    P S +S+YA+LG++P CSAA++KAAFR KV
Sbjct: 518 LPFGSRSFAQFAKKKARASCSLRDDD---APLSIASSYAVLGLDPHCSAADIKAAFRTKV 574

Query: 87  KQYHPDVNRDGRD---SDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFV 143
           KQ+HPD+NRD      SDA+IRR+IQAY IL+  +  E+IE EC+DPFD PECEA D+FV
Sbjct: 575 KQFHPDLNRDANARTFSDAMIRRVIQAYRILSNCTPSELIESECLDPFDTPECEAFDLFV 634

Query: 144 NEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203
           N++LCVGK C  SCV+ AP+AF+Y+SSTGTARA SQGHG DY+VQ AVGQCPRSCIHYVT
Sbjct: 635 NQLLCVGKACSNSCVERAPHAFTYASSTGTARASSQGHGDDYQVQCAVGQCPRSCIHYVT 694

Query: 204 PSQRIILEELLESILDAPYDTSAEAELLYSLIVKARFENNRYQKPKKKPKTSSQHVDWF 262
           PSQRI+LEELL+S L+APYDTSAEA+LLYSLI KA+FENNRYQKPKK+PK+SSQHVDWF
Sbjct: 695 PSQRILLEELLDSTLEAPYDTSAEADLLYSLITKAKFENNRYQKPKKQPKSSSQHVDWF 753

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492320|gb|AFK34226.1| unknown [Lotus japonicus]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 155/219 (70%), Positives = 184/219 (84%), Gaps = 2/219 (0%)

Query: 46  CTERTGENASTPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRD--GRDSDAL 103
           C+ R  +    P ST+ AYA+LGV+  CS AE+KAAFRAKVKQ+HPDV RD   RDSD++
Sbjct: 35  CSCRGRDRDDAPLSTAPAYAVLGVQHGCSGAEIKAAFRAKVKQFHPDVIRDENDRDSDSM 94

Query: 104 IRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPN 163
           IRR+I+AY +L+  S  +IIE EC+DPFD PECEA D+FVNE+ CVGK C  SCV+ AP+
Sbjct: 95  IRRVIEAYRMLSNLSPSQIIEGECLDPFDTPECEAFDLFVNELYCVGKACSNSCVERAPH 154

Query: 164 AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLESILDAPYD 223
           AF+Y SSTGTARA SQG G+DY+VQ AVGQCPR+CIHYVTPSQRI+LEELL+SILDAPYD
Sbjct: 155 AFTYVSSTGTARASSQGRGEDYQVQQAVGQCPRNCIHYVTPSQRILLEELLDSILDAPYD 214

Query: 224 TSAEAELLYSLIVKARFENNRYQKPKKKPKTSSQHVDWF 262
            SAEA+LLYSLI KA+FENNRYQKPKK+PKTS+QHVDWF
Sbjct: 215 ISAEADLLYSLITKAKFENNRYQKPKKQPKTSTQHVDWF 253

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:5019474746	244	AT3G05345 "AT3G05345" [Arabido	0.877	0.942	0.645	4.5e-75
TAIR|locus:2052426	344	AT2G42750 [Arabidopsis thalian	0.530	0.404	0.322	6.7e-13
TAIR|locus:2166968	465	AT5G23240 [Arabidopsis thalian	0.679	0.382	0.282	1.5e-11
UNIPROTKB|Q55980	133	sll0662 "Ferredoxin (Bacterial	0.290	0.571	0.354	4.7e-08
TIGR_CMR|SPO_0044	381	SPO_0044 "chaperone protein Dn	0.236	0.162	0.387	1.1e-06
TAIR|locus:2030352	126	AT1G72070 [Arabidopsis thalian	0.270	0.563	0.364	4.1e-06
FB|FBgn0037151	128	CG7130 [Drosophila melanogaste	0.232	0.476	0.322	1.2e-05
TAIR|locus:2140035	447	AT4G39960 [Arabidopsis thalian	0.232	0.136	0.387	1.3e-05
UNIPROTKB|B0CM59	277	DNAJB2 "DnaJ homolog, subfamil	0.236	0.223	0.380	2.6e-05
UNIPROTKB|P25686	324	DNAJB2 "DnaJ homolog subfamily	0.236	0.191	0.380	3.7e-05

TAIR|locus:5019474746 AT3G05345 "AT3G05345" [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 153/237 (64%), Positives = 174/237 (73%)

Query:    27 NFPSNSTTRRRFPSKFTVNCTERTGENXXXXXXXXXXYAILGVEPSCSAAELKAAFRAKV 86
             +F SNS  R     +F  +C    G+N          Y+ILGVEPSCS++ELKAAFRAKV
Sbjct:    14 SFFSNS--RYSTSQRFIPSCR---GKNREDPLSSSSPYSILGVEPSCSSSELKAAFRAKV 68

Query:    87 KQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEV 146
             KQYHPDVN+DG +SD +IRRIIQAYE+LT YSR EIIE EC+DPFD+PECEALDVFVNEV
Sbjct:    69 KQYHPDVNKDGSNSDIMIRRIIQAYEMLTNYSRSEIIEGECLDPFDHPECEALDVFVNEV 128

Query:   147 LCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQ 206
             LCVGK C Y C +TA + FS  SS GTARA+SQGHG+DYRVQ AV QCPR+CIHYVTPSQ
Sbjct:   129 LCVGKRCSYPCFETASHVFSCDSS-GTARAMSQGHGEDYRVQSAVNQCPRNCIHYVTPSQ 187

Query:   207 RXXXXXXXXXXXDAPYDTSAEAELLYSLIVKARFENNRYQXXXXXXXTSS-QHVDWF 262
             R           D PYD SAEAE LY+LIVKA+FENNRYQ        SS +HVDWF
Sbjct:   188 RIILEELLDSVVDKPYDCSAEAEFLYALIVKAKFENNRYQKPKKKQPESSGKHVDWF 244

GO:0008150 "biological_process" evidence=ND

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2052426 AT2G42750 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 6.7e-13, P = 6.7e-13
 Identities = 48/149 (32%), Positives = 70/149 (46%)

Query:    64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE------Y 117
             YA+LG+ P  +  E+K A+   +K  HPD++ +  ++      I   YEIL++      Y
Sbjct:    78 YAVLGLLPDATQEEIKKAYYNCMKSCHPDLSGNDPETTNFCMFINDIYEILSDPVQRMVY 137

Query:   118 SRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAI 177
               +       I+PF         VFV+E  C+G  C  +C   AP+ F      G ARA 
Sbjct:   138 DEIHGYTVTAINPFLDDSTPRDHVFVDEFACIG--CK-NCANVAPDIFQIEEDFGRARAC 194

Query:   178 SQGHGQDYRVQLAVGQCPRSCIHYVTPSQ 206
             +Q    D  VQ AV  CP  CIH  + +Q
Sbjct:   195 NQRGNPDL-VQQAVETCPVDCIHQTSAAQ 222

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

TAIR|locus:2166968 AT5G23240 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 59/209 (28%), Positives = 97/209 (46%)

Query:    16 FHKTVISPNCHNFPSNSTTRR---RFPSKFTVNCTERTGENXXXXXXXXXXYAILGVEPS 72
             F  T + P+   +P +++ +    R P KF    T     +          Y +LG++ S
Sbjct:     6 FSPTTLPPSTATWPCSTSQKLITVRSPLKFKCRAT-----SSSSSITDFDLYDLLGIDRS 60

Query:    73 CSAAELKAAFRAKVKQYHPDVNRD-GRDSDALIRRIIQAYEILT----------EYSRLE 121
                +++K+A+RA  K+ HPD+  D G D  A+I  + +AY++L+          E ++LE
Sbjct:    61 SDKSQIKSAYRALQKRCHPDIAGDPGHDM-AII--LNEAYQLLSDPISRQAYDKEQAKLE 117

Query:   122 IIERECIDPFDY-----PECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARA 176
              +      P  Y     PE E    FV+EV CVG  C   C   A   F+  ++ G AR 
Sbjct:   118 ELRGYTGKPI-YSVWCGPETEQRAAFVDEVKCVG--C-LKCALCAEKTFAIETAYGRARV 173

Query:   177 ISQGHGQDYRVQLAVGQCPRSCIHYVTPS 205
             ++Q    + +++ A+  CP  CI  V  S
Sbjct:   174 VAQWADPESKIKEAIEACPVDCISMVERS 202

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q55980 sll0662 "Ferredoxin (Bacterial type ferredoxin family)" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 127 (49.8 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 28/79 (35%), Positives = 41/79 (51%)

Query:   124 ERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQ 183
             +R  ++P    E     V+V+EV C+G  C  +C   APN F+     G +RA SQ    
Sbjct:    29 DRSGLEPELGGELRERGVYVDEVTCIG--CK-NCAHVAPNTFTIEQEHGRSRAFSQNGDD 85

Query:   184 DYRVQLAVGQCPRSCIHYV 202
             +  +Q A+  CP  CIH+V
Sbjct:    86 EAVIQEAIDTCPVDCIHWV 104

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|SPO_0044 SPO_0044 "chaperone protein DnaJ" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 135 (52.6 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query:    64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
             Y +LGV    SA E+K A+R K K+ HPD N+D  D+++L + + +AYE+L +  +    
Sbjct:     7 YDVLGVSKGASADEIKKAYRGKAKELHPDRNKDNPDAESLFKEVNEAYEVLKDAEKKAAY 66

Query:   124 ER 125
             +R
Sbjct:    67 DR 68

GO:0009408 "response to heat" evidence=ISS

TAIR|locus:2030352 AT1G72070 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 27/74 (36%), Positives = 40/74 (54%)

Query:    64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
             Y +LG+ P  S  E+K AF+    +YHPDV++ G+D D   + I  AYE L +  + E  
Sbjct:    41 YTVLGLTPLASQTEVKRAFKRLALKYHPDVHK-GQDKD--FKEIKSAYECLMQKFKKEEE 97

Query:   124 ERECIDPFDYPECE 137
             E E  +  +  E E
Sbjct:    98 EMEITEMGEIDEWE 111

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

FB|FBgn0037151 CG7130 [Drosophila melanogaster (taxid:7227)]

 Score = 106 (42.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query:    64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
             Y ILG+E + S+ ++K  +R    +YHPD N D   ++   R ++ A+E+L +  + EI 
Sbjct:     6 YKILGIERNASSEDVKKGYRRMALRYHPDKN-DHPQAEEQFREVVAAFEVLFDKEKREIY 64

Query:   124 ER 125
             ++
Sbjct:    65 DQ 66

GO:0009408 "response to heat" evidence=ISS

TAIR|locus:2140035 AT4G39960 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query:    64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
             Y++LGV  + + AE+K+A+R   + YHPDVN+D    D   + I  AYEIL++  +  + 
Sbjct:    87 YSVLGVSKNATKAEIKSAYRKLARSYHPDVNKDAGAEDKF-KEISNAYEILSDDEKRSLY 145

Query:   124 ER 125
             +R
Sbjct:   146 DR 147

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|B0CM59 DNAJB2 "DnaJ homolog, subfamily B, member 2, isoform 1 (Predicted)" [Papio anubis (taxid:9555)]

 Score = 121 (47.7 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 24/63 (38%), Positives = 40/63 (63%)

Query:    64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEILTEYSRLEI 122
             Y IL V  S SA ++K A+R K  Q+HPD N D ++ ++   + + +AYE+L++  + EI
Sbjct:     5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query:   123 IER 125
              +R
Sbjct:    65 YDR 67

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

UNIPROTKB|P25686 DNAJB2 "DnaJ homolog subfamily B member 2" [Homo sapiens (taxid:9606)]

 Score = 121 (47.7 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 24/63 (38%), Positives = 40/63 (63%)

Query:    64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEILTEYSRLEI 122
             Y IL V  S SA ++K A+R K  Q+HPD N D ++ ++   + + +AYE+L++  + EI
Sbjct:     5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query:   123 IER 125
              +R
Sbjct:    65 YDR 67

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0030308 "negative regulation of cell growth" evidence=IGI

GO:0051082 "unfolded protein binding" evidence=TAS

GO:0006986 "response to unfolded protein" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000502 "proteasome complex" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0016234 "inclusion body" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IPI

GO:0031593 "polyubiquitin binding" evidence=IDA

GO:0070628 "proteasome binding" evidence=IDA

GO:0090086 "negative regulation of protein deubiquitination" evidence=IDA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0090084 "negative regulation of inclusion body assembly" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022831001 SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (265 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
pfam00226	63	pfam00226, DnaJ, DnaJ domain	7e-15
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	1e-14
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	3e-14
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	4e-11
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	3e-10
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-09
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	3e-09
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-08
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	3e-08
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	3e-08
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	4e-08
pfam13459	60	pfam13459, Fer4_15, 4Fe-4S single cluster domain	7e-08
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-07
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	2e-07
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	3e-07
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	4e-07
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	4e-07
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	4e-07
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	6e-07
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	7e-07
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	8e-07
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	1e-06
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-06
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	2e-06
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	2e-06
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-06
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	4e-06
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	6e-06
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	1e-05
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	2e-05
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-05
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	4e-05
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	5e-05
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	2e-04
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	2e-04
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	8e-04
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	0.002

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 67.2 bits (165), Expect = 7e-15
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV    S  E+K A+R    +YHPD N     ++   + I +AYE+L+
Sbjct: 3   YEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLS 54

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 66.0 bits (162), Expect = 1e-14
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV P  S  E+K A+R    +YHPD N D  +++   + I +AYE+L+
Sbjct: 3   YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 64.9 bits (159), Expect = 3e-14
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 62  SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILT 115
             Y ILGV    S  E+K A+R    +YHPD N     +++   + I +AYE+L+
Sbjct: 2   DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLS 56

Length = 60

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV    S  E+K A+R   K+YHPD N+D ++++   + I +AYE+L+
Sbjct: 3   YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-KEAEEKFKEINEAYEVLS 53

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV    S  E+K A+R   K+YHPD N   ++++   + I +AYE+L+
Sbjct: 7   YEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLS 58

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 56.7 bits (138), Expect = 2e-09
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LGV  + S  E+K A+R    +YHPD N   ++++   + I +AYE+L+
Sbjct: 7   YEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLS 58

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 21/53 (39%), Positives = 36/53 (67%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV+ + +  E+K A+R   K+YHPD+N   ++++   + I +AYEIL++
Sbjct: 8   YEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSD 60

Length = 386

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y +LGV  S S  E+K A+R   K+YHPD+N++   +D   + I +AYE+L++
Sbjct: 7   YEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSD 58

Length = 376

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 20/56 (35%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
           YAI+GV+P+     +K A+R   ++YHPDV+++  D++A  + + +A+E+L++  R
Sbjct: 7   YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-DAEARFKEVAEAWEVLSDEQR 61

Length = 306

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV       ELK A+R   ++YHPDVN++    D   + I +AYE+L++
Sbjct: 6   YEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRF-KEINRAYEVLSD 57

Length = 374

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y +LGV  + S AE+K A+R   ++ HPDVN D  ++    + I  AYE+L++
Sbjct: 6   YGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSD 57

Length = 378

>gnl|CDD|222145 pfam13459, Fer4_15, 4Fe-4S single cluster domain

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 142 FVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHG----QDYRVQLAVGQCPRS 197
           FV+   C+G G    CV  AP+ F      G AR I          +   Q A   CP  
Sbjct: 1   FVDRDTCIGCGL---CVALAPDVFELDE-DGKARVILDEGEVPDDLEEDAQEAADACPVD 56

Query: 198 CIHY 201
            IH 
Sbjct: 57  AIHV 60

Length = 60

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y ILGV    S  E+K ++R    +YHPD N   ++++ L +   +AYE+L++  +  I 
Sbjct: 7   YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIY 66

Query: 124 ER 125
           ++
Sbjct: 67  DQ 68

Length = 366

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEIL 114
           Y ILGV P+ S  E+K A+R    +YHPD N      ++   + I +AYEIL
Sbjct: 9   YEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEIL 60

Length = 237

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LGV  S    E+K A+R    +YHPD N D ++++   + + +AYE+L+
Sbjct: 6   YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLS 57

Length = 397

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 18/53 (33%), Positives = 33/53 (62%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y +LGV  + +  E+K A+R K  QYHPD N   ++++   +   +AY++L++
Sbjct: 8   YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSD 60

Length = 386

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y ILGV  + S A+LK A+    KQYHPD   D +D++   + I  AY++L +  +    
Sbjct: 6   YQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRAAY 64

Query: 124 ERECIDPFDYPE 135
           +R   D F   +
Sbjct: 65  DRFGHDAFQNQQ 76

Length = 372

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y ILGV  + S  E+K A+R    +YHPD N    +++   + + +AYE+L++  + E  
Sbjct: 4   YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESY 63

Query: 124 ER 125
           +R
Sbjct: 64  DR 65

Length = 391

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTE 116
           Y ILGV+ + S  ++K AFR   K++HPD++   + +++   + I +AYE+L++
Sbjct: 6   YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSD 59

Length = 365

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 18/53 (33%), Positives = 33/53 (62%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILG+    S  E+K A+R    +YHPD N+  ++++++ +   +AYE+L +
Sbjct: 6   YEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLID 58

Length = 365

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 49.1 bits (117), Expect = 8e-07
 Identities = 18/56 (32%), Positives = 34/56 (60%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
           Y +LGV    + AE+K A+R   ++YHPD N+    ++   + I +AY++L++  +
Sbjct: 12  YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKK 67

Length = 389

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 53  NASTPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPD 92
            A   P+   AY +LGV  S    E+K A+R  + ++HPD
Sbjct: 192 QAQRGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPD 231

Length = 267

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 59  STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYS 118
           S  S Y ILGV  S +  E+K+A+R    +YHPD N+  ++S+   +   +AYEIL +  
Sbjct: 2   SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPK 61

Query: 119 RLEIIERECIDPF 131
           +     R+  D F
Sbjct: 62  K-----RQAYDQF 69

Length = 372

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           YAILGV  + S  E+K AF+   ++YHPDVN+    ++   + I +AY +L++  +  I 
Sbjct: 7   YAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIY 65

Query: 124 ER 125
           + 
Sbjct: 66  DT 67

Length = 291

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 19/53 (35%), Positives = 34/53 (64%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y +LG+E   S  E+K AFR    +YHPD N+  ++++   + I +AY++L++
Sbjct: 7   YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSD 59

Length = 380

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           Y +LGV    S  E+K A+R    QYHPD N D  +++   +   +AYE+L
Sbjct: 7   YEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVL 57

Length = 373

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 59  STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           S    Y +LGV+ + S  E+K A+R   ++YHPDVN+   D++   + + +AY+ L++
Sbjct: 2   SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSD 58

Length = 371

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 46.7 bits (110), Expect = 6e-06
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LG++      E+K AFR   K+YHPD N+   D+ ++   I +A ++L+
Sbjct: 5   YEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAP-DAASIFAEINEANDVLS 55

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y  LGV    S  E+K A+R   K+YHPD+N++   ++   + + +AYE L++
Sbjct: 7   YDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP-GAEEKYKEVQEAYETLSD 58

Length = 380

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV  + +  E+K A+R   ++YHPD N++  +++   + I +AY++L++
Sbjct: 6   YEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSD 57

Length = 382

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTE 116
           Y ILGV  + +  E+K A++  VK++HPD + + R +++   + I +AYE+L++
Sbjct: 7   YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSD 60

Length = 369

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE------Y 117
           Y +LGV  + SA E+K+A+R    +YHPD N++   ++    +I +AY +L++      Y
Sbjct: 5   YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKF-AQINEAYAVLSDAEKRAHY 63

Query: 118 SRLEIIERECI---DPFDYPECEALDVF 142
            R        +   DPF     + +D+F
Sbjct: 64  DRFGTAPGAGMPGGDPFGGMGFDPMDIF 91

Length = 371

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 59  STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           +T   Y ILG+    S  ++K A+R    +YHPD N++  D++   + I +AY +L++
Sbjct: 3   TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP-DAEEKFKEISEAYAVLSD 59

Length = 377

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y +LGV+ +    E+K A+R   ++YHPDV+ +   ++   + I +AY +L++
Sbjct: 8   YEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSD 59

Length = 378

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           Y +LGV  + S  E++ A+R   KQYHPD+N+   D+   +  I +A ++L
Sbjct: 7   YEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP-DAHDKMVEINEAADVL 56

Length = 372

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y  LGV    SA E+K A+R   ++ HPD N     ++   + + +A+++L++
Sbjct: 12  YKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSD 64

Length = 392

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 51  GENASTPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQA 110
           G            Y +L +   C+ +E+K A+R    ++HPD    G D +   + I +A
Sbjct: 18  GGRRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPD---KGGDPEKF-KEISRA 73

Query: 111 YEILTEYSRLEIIERECIDPFD--YPECEALDVF 142
           YE+L++  + +I +    +  +      +A D+F
Sbjct: 74  YEVLSDPEKRKIYDEYGEEGLEGGEQPADASDLF 107

Length = 421

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.93
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.89
PRK14288	369	chaperone protein DnaJ; Provisional	99.83
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.83
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.82
PRK14296	372	chaperone protein DnaJ; Provisional	99.82
PRK14286	372	chaperone protein DnaJ; Provisional	99.81
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.8
PRK14279	392	chaperone protein DnaJ; Provisional	99.8
PRK14287	371	chaperone protein DnaJ; Provisional	99.8
PRK14282	369	chaperone protein DnaJ; Provisional	99.79
PRK14294	366	chaperone protein DnaJ; Provisional	99.79
PRK14297	380	chaperone protein DnaJ; Provisional	99.78
PRK14277	386	chaperone protein DnaJ; Provisional	99.78
PRK14285	365	chaperone protein DnaJ; Provisional	99.78
PRK14276	380	chaperone protein DnaJ; Provisional	99.78
PRK14301	373	chaperone protein DnaJ; Provisional	99.78
PRK14283	378	chaperone protein DnaJ; Provisional	99.77
PRK14298	377	chaperone protein DnaJ; Provisional	99.77
PRK14295	389	chaperone protein DnaJ; Provisional	99.77
PRK14299	291	chaperone protein DnaJ; Provisional	99.77
PRK14280	376	chaperone protein DnaJ; Provisional	99.77
PRK10767	371	chaperone protein DnaJ; Provisional	99.76
PRK14284	391	chaperone protein DnaJ; Provisional	99.76
PRK14278	378	chaperone protein DnaJ; Provisional	99.76
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.76
PRK14291	382	chaperone protein DnaJ; Provisional	99.76
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.75
PRK14281	397	chaperone protein DnaJ; Provisional	99.75
PRK14289	386	chaperone protein DnaJ; Provisional	99.73
PRK14290	365	chaperone protein DnaJ; Provisional	99.73
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.72
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.72
PRK14300	372	chaperone protein DnaJ; Provisional	99.72
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.71
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.71
PRK14292	371	chaperone protein DnaJ; Provisional	99.71
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.71
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.7
PRK14293	374	chaperone protein DnaJ; Provisional	99.69
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.67
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.66
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.65
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.64
PHA03102	153	Small T antigen; Reviewed	99.63
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.61
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.61
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.58
PRK05014	171	hscB co-chaperone HscB; Provisional	99.5
PRK01356	166	hscB co-chaperone HscB; Provisional	99.48
PRK00294	173	hscB co-chaperone HscB; Provisional	99.47
PRK03578	176	hscB co-chaperone HscB; Provisional	99.46
PTZ00100	116	DnaJ chaperone protein; Provisional	99.44
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.41
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.41
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.39
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.34
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.31
PHA02624	647	large T antigen; Provisional	99.23
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.18
PRK01773	173	hscB co-chaperone HscB; Provisional	99.16
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.01
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.93
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.84
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.53
PF13459	65	Fer4_15: 4Fe-4S single cluster domain	98.46
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.43
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.38
PF13370	58	Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A	98.37
COG1141	68	Fer Ferredoxin [Energy production and conversion]	98.25
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.59
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.0
PF06902	64	Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro:	96.58
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.38
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	96.11
KOG0431	453	consensus Auxilin-like protein and related protein	95.83
COG3592	74	Uncharacterized conserved protein [Function unknow	93.38
PF13446	62	RPT: A repeated domain in UCH-protein	89.39
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	83.39

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=6.6e-26  Score=208.51  Aligned_cols=90  Identities=27%  Similarity=0.412  Sum_probs=77.6

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCCCc---
Q 024836           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYP---  134 (262)
Q Consensus        58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~~~---  134 (262)
                      |..+|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||++|+.||++|.+++...   
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g   80 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG   80 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence            35678999999999999999999999999999999999878999999999999999999999999999987765311   


Q ss_pred             -----cc--chhhhhhhccc
Q 024836          135 -----EC--EALDVFVNEVL  147 (262)
Q Consensus       135 -----~~--~~~~iFv~~~~  147 (262)
                           .+  +..|||-+.|.
T Consensus        81 g~g~~~fgg~~~DIF~~~Fg  100 (371)
T COG0484          81 GFGFGGFGGDFGDIFEDFFG  100 (371)
T ss_pred             CCCcCCCCCCHHHHHHHhhc
Confidence                 11  34667766663

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.1e-23  Score=189.77  Aligned_cols=75  Identities=27%  Similarity=0.436  Sum_probs=70.7

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      ....+|||+||||+++|+..|||+|||+||++||||+|++++.|.+.|++|+.||+||+||++|+.||.+|..+.
T Consensus        12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL   86 (336)
T KOG0713|consen   12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGL   86 (336)
T ss_pred             hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhh
Confidence            456689999999999999999999999999999999999999999999999999999999999999999986544

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=7.7e-21  Score=177.61  Aligned_cols=71  Identities=25%  Similarity=0.445  Sum_probs=66.9

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      .|||+||||+++||.+|||+|||+||++||||+++.++.++++|++|++||+||+||.+|+.||++|..++
T Consensus         3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~   73 (369)
T PRK14288          3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL   73 (369)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence            68999999999999999999999999999999998767889999999999999999999999999987654

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.4e-20  Score=164.85  Aligned_cols=91  Identities=23%  Similarity=0.364  Sum_probs=78.4

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCC------CC--
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID------PF--  131 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~------~f--  131 (262)
                      ..++|+||||+++|+.++|||+||+|+++||||++++++++.++|++||+||+||+|+.+|..||.+|.-      .|  
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e~fg~  109 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAEQFGE  109 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHHhhcc
Confidence            6789999999999999999999999999999999999999999999999999999999999999998532      23  


Q ss_pred             ---------CCcccchhhhhhhcccccc
Q 024836          132 ---------DYPECEALDVFVNEVLCVG  150 (262)
Q Consensus       132 ---------~~~~~~~~~iFv~~~~c~G  150 (262)
                               .+|......++++...|.+
T Consensus       110 d~~~~~~v~~~~~~~~~~a~~dll~g~~  137 (279)
T KOG0716|consen  110 DSKIIYFVFSSPWIKATAACFDLLTGQR  137 (279)
T ss_pred             cCcceEEEecchhhhHHhhhhhhhhcch
Confidence                     3344445556777777665

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1e-20  Score=172.19  Aligned_cols=69  Identities=36%  Similarity=0.606  Sum_probs=64.9

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      .+.+|+||||+++|+.+|||+|||+|+++||||||++   +.++|++|.+||++|+||++|+.||++|.++.
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~   71 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL   71 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            4569999999999999999999999999999999987   67999999999999999999999999997754

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.3e-20  Score=176.12  Aligned_cols=71  Identities=27%  Similarity=0.463  Sum_probs=66.0

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      ..+|||+||||+++|+.+|||+|||+||++||||++++ +.|+++|++|++||+||+||++|+.||++|..+
T Consensus         2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~   72 (372)
T PRK14296          2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAA   72 (372)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhccchh
Confidence            45789999999999999999999999999999999975 678999999999999999999999999987654

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=3.3e-20  Score=173.49  Aligned_cols=72  Identities=32%  Similarity=0.512  Sum_probs=67.3

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      ...|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||+||+||.+|+.||++|.++
T Consensus         2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   73 (372)
T PRK14286          2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG   73 (372)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence            457899999999999999999999999999999999877788999999999999999999999999987654

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.80  E-value=8.4e-20  Score=172.85  Aligned_cols=73  Identities=23%  Similarity=0.458  Sum_probs=65.7

Q ss_pred             CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836           56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (262)
Q Consensus        56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~  132 (262)
                      ..+...|||+||||+++||.+|||+|||+||++||||++++    .++|++|++||++|+||.+|+.||++|..++.
T Consensus        23 ~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~   95 (421)
T PTZ00037         23 REVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE   95 (421)
T ss_pred             ccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcc
Confidence            34556799999999999999999999999999999999853    48999999999999999999999998876553

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=7.3e-20  Score=172.21  Aligned_cols=69  Identities=23%  Similarity=0.404  Sum_probs=65.5

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~  128 (262)
                      .+|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+||++|+.||++|.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            478999999999999999999999999999999998777889999999999999999999999999864

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=1.3e-19  Score=169.50  Aligned_cols=72  Identities=28%  Similarity=0.498  Sum_probs=66.3

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||++|.+++
T Consensus         2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~   73 (371)
T PRK14287          2 SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP   73 (371)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence            34689999999999999999999999999999999975 6788999999999999999999999999887643

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.8e-19  Score=168.42  Aligned_cols=72  Identities=26%  Similarity=0.513  Sum_probs=66.2

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++.+ ..++++|++|++||++|+||.+|+.||++|..+
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~   74 (369)
T PRK14282          2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG   74 (369)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence            356899999999999999999999999999999999764 568899999999999999999999999987654

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=2.5e-19  Score=167.36  Aligned_cols=73  Identities=27%  Similarity=0.517  Sum_probs=67.9

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      ...|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+||.+|+.||++|.+++
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~   74 (366)
T PRK14294          2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL   74 (366)
T ss_pred             CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence            4578999999999999999999999999999999998767789999999999999999999999999987644

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2.8e-19  Score=167.73  Aligned_cols=72  Identities=28%  Similarity=0.540  Sum_probs=67.2

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.++.++++|++|++||++|+||.+|+.||++|..++
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~   74 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF   74 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence            468999999999999999999999999999999998777889999999999999999999999999886544

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=4e-19  Score=166.99  Aligned_cols=72  Identities=31%  Similarity=0.563  Sum_probs=67.0

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+|+.+|..||++|.+++
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~   75 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF   75 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence            368999999999999999999999999999999998777889999999999999999999999999876543

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=3.2e-19  Score=166.45  Aligned_cols=71  Identities=28%  Similarity=0.551  Sum_probs=66.5

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      .|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+|+.+|..||++|..++
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~   73 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF   73 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence            58999999999999999999999999999999998777889999999999999999999999999876543

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=3.8e-19  Score=166.83  Aligned_cols=71  Identities=27%  Similarity=0.473  Sum_probs=66.0

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+||.+|+.||++|.+++
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~   73 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA   73 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence            4689999999999999999999999999999999986 6788999999999999999999999999886543

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=3.6e-19  Score=166.60  Aligned_cols=72  Identities=29%  Similarity=0.467  Sum_probs=67.1

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||+||+||.+|..||++|.+++
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~   74 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV   74 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence            468999999999999999999999999999999998777788999999999999999999999999876543

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=5.5e-19  Score=165.66  Aligned_cols=72  Identities=24%  Similarity=0.496  Sum_probs=66.5

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      ...|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+|+.+|..||++|..++
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~   74 (378)
T PRK14283          3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM   74 (378)
T ss_pred             CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence            35789999999999999999999999999999999986 6789999999999999999999999999876543

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=6.2e-19  Score=165.17  Aligned_cols=71  Identities=28%  Similarity=0.512  Sum_probs=65.7

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      .+|||+||||+++|+.+|||+|||+||++||||++++ +.++++|++|++||++|+||.+|+.||++|.+++
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   74 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI   74 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence            4689999999999999999999999999999999975 6788999999999999999999999999886543

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=8e-19  Score=165.05  Aligned_cols=72  Identities=26%  Similarity=0.520  Sum_probs=67.1

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHh----cCCCCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIER----ECIDPF  131 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~----~~~~~f  131 (262)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.++.++++|++|++||++|+||.+|+.||+    +|..++
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~   83 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF   83 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence            468999999999999999999999999999999998767789999999999999999999999998    776655

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=9.1e-19  Score=158.87  Aligned_cols=69  Identities=32%  Similarity=0.552  Sum_probs=64.8

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID  129 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~  129 (262)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+|+.+|..||++|..
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            4689999999999999999999999999999999974 67889999999999999999999999998764

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=8.1e-19  Score=164.41  Aligned_cols=70  Identities=31%  Similarity=0.547  Sum_probs=65.4

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+||.+|+.||++|..+
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   72 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG   72 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence            4689999999999999999999999999999999976 578899999999999999999999999988654

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=8.2e-19  Score=164.14  Aligned_cols=73  Identities=27%  Similarity=0.519  Sum_probs=67.6

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      +..|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+|+.+|..||++|..++
T Consensus         2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~   74 (371)
T PRK10767          2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF   74 (371)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence            3568999999999999999999999999999999998767788999999999999999999999999876544

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=8.9e-19  Score=164.92  Aligned_cols=69  Identities=32%  Similarity=0.551  Sum_probs=65.7

Q ss_pred             chhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        62 ~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      |||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+|+.+|+.||++|.++
T Consensus         2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   70 (391)
T PRK14284          2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG   70 (391)
T ss_pred             CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence            799999999999999999999999999999999977789999999999999999999999999988654

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=9.3e-19  Score=164.07  Aligned_cols=68  Identities=32%  Similarity=0.549  Sum_probs=64.2

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID  129 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~  129 (262)
                      +|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+|+.+|..||++|.+
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            589999999999999999999999999999999985 67889999999999999999999999998754

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.76  E-value=1.5e-18  Score=122.52  Aligned_cols=63  Identities=40%  Similarity=0.665  Sum_probs=59.8

Q ss_pred             chhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc-hHHHHHHHHHHHHHHhcChhHHHHHH
Q 024836           62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIE  124 (262)
Q Consensus        62 ~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~Yd  124 (262)
                      |+|+||||+++++.++||++|+++++++|||++.... .+.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            5899999999999999999999999999999988764 57899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.3e-18  Score=163.29  Aligned_cols=70  Identities=27%  Similarity=0.581  Sum_probs=65.5

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      .|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+||.+|+.||++|.+++
T Consensus         3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~   72 (382)
T PRK14291          3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF   72 (382)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence            689999999999999999999999999999999986 6788999999999999999999999999886543

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.6e-18  Score=156.65  Aligned_cols=74  Identities=32%  Similarity=0.551  Sum_probs=68.1

Q ss_pred             CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      .++...|||+||||+++|+..|||+||++|+|+||||.+.++ .+.++|++|.+||+||+|+++|..||..+..+
T Consensus        38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            344555899999999999999999999999999999999985 88999999999999999999999999987654

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.5e-18  Score=163.63  Aligned_cols=71  Identities=27%  Similarity=0.480  Sum_probs=66.4

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      .|||+||||+++|+.+|||+|||+|+++||||+++++..++++|++|++||++|+|+.+|..||++|..++
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~   73 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV   73 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence            58999999999999999999999999999999998777788999999999999999999999999876543

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=5.5e-18  Score=159.35  Aligned_cols=71  Identities=25%  Similarity=0.485  Sum_probs=66.7

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+||.+|..||++|..+
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~   74 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG   74 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence            46899999999999999999999999999999999877789999999999999999999999999987643

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=5.2e-18  Score=158.44  Aligned_cols=71  Identities=28%  Similarity=0.562  Sum_probs=66.2

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc-hHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      .|||+||||+++|+.+|||+|||+|+++||||+++++. .++++|++|++||++|+|+.+|..||++|..++
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~   74 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF   74 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence            58999999999999999999999999999999998654 788999999999999999999999999887655

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=6.7e-18  Score=156.99  Aligned_cols=71  Identities=30%  Similarity=0.477  Sum_probs=65.5

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (262)
Q Consensus        57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~  127 (262)
                      +...+.||+||||.++|+..+||++||+||++||||++++. .++++.|+.|+.||+|||||..|.+||.+.
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hr   75 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHR   75 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHH
Confidence            34467899999999999999999999999999999998875 578999999999999999999999999874

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.1e-17  Score=150.68  Aligned_cols=71  Identities=27%  Similarity=0.474  Sum_probs=67.4

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      ..|||+||||+.+++..|||+|||.++++||||+|+++|.|.++|+.|.+||+||+|+..|..||..+-.+
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~   74 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG   74 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence            56899999999999999999999999999999999999999999999999999999999999999976543

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=1.1e-17  Score=156.61  Aligned_cols=70  Identities=34%  Similarity=0.566  Sum_probs=64.9

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      .|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||++|+|+.+|..||++|..++
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~   72 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF   72 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence            589999999999999999999999999999999874 5688999999999999999999999999876543

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.71  E-value=1.2e-17  Score=155.37  Aligned_cols=69  Identities=32%  Similarity=0.564  Sum_probs=64.0

Q ss_pred             chhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        62 ~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      |||+||||+++|+.+|||+|||+|+++||||+++ .+.++++|++|++||++|+|+.+|..||++|..++
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~   69 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF   69 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence            6999999999999999999999999999999997 36688999999999999999999999999876543

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.71  E-value=2e-17  Score=165.58  Aligned_cols=75  Identities=19%  Similarity=0.305  Sum_probs=68.7

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (262)
Q Consensus        57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~  132 (262)
                      ....++||+||||+++|+..+||+|||+||++||||+++++ .+.++|+.|++||++|+||.+|+.||.+|..+..
T Consensus       569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~  643 (1136)
T PTZ00341        569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK  643 (1136)
T ss_pred             cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence            34468999999999999999999999999999999999875 6889999999999999999999999999877643

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=2.1e-17  Score=154.72  Aligned_cols=69  Identities=30%  Similarity=0.541  Sum_probs=64.5

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      .|||+||||+++|+.++||+|||+|+++||||++++ ..++++|++|++||++|+||.+|+.||++|..+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~   70 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP   70 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence            479999999999999999999999999999999985 578899999999999999999999999988654

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.71  E-value=1.8e-17  Score=151.40  Aligned_cols=68  Identities=29%  Similarity=0.582  Sum_probs=63.6

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~  128 (262)
                      ..|||+||||+++++.+|||+|||+|+++||||+++. +.++++|++|++||++|+|+.+|..||.++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            4689999999999999999999999999999999875 5789999999999999999999999999763

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=2.4e-17  Score=153.41  Aligned_cols=76  Identities=24%  Similarity=0.431  Sum_probs=68.8

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC---chHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG---RDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (262)
Q Consensus        57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~  132 (262)
                      ...+.++|.+|+|+++|+.+|||+|||++++.|||||..++   ..|+++|++|.+|||||+||.+|.+||.+|..|..
T Consensus         5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            34567899999999999999999999999999999998854   46899999999999999999999999999876653

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=3.3e-17  Score=153.50  Aligned_cols=70  Identities=30%  Similarity=0.505  Sum_probs=65.1

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      .|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||.+|..++
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~   72 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV   72 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence            589999999999999999999999999999999876 5788999999999999999999999999886543

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.67  E-value=1e-16  Score=111.32  Aligned_cols=58  Identities=34%  Similarity=0.602  Sum_probs=54.0

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCC-CchHHHHHHHHHHHHHHhcChh
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRD-GRDSDALIRRIIQAYEILTEYS  118 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~-~~~a~~~f~~i~~Ay~~L~d~~  118 (262)
                      .+||+||||+++++.++||++|++|++++|||++++ .+.+.+.|+.|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            369999999999999999999999999999999986 4678899999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.66  E-value=2.8e-16  Score=107.20  Aligned_cols=55  Identities=40%  Similarity=0.727  Sum_probs=51.6

Q ss_pred             chhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcC
Q 024836           62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE  116 (262)
Q Consensus        62 ~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d  116 (262)
                      |||+||||+++++.++||++||+|++++|||++++...+.+.|++|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999999999999998755678999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.7e-16  Score=136.36  Aligned_cols=70  Identities=23%  Similarity=0.468  Sum_probs=64.3

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCC--CCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNR--DGRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (262)
Q Consensus        59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~--~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~  128 (262)
                      ...++|+||||.++|+..+|++||++|++++|||+++  +..++.+.|+.|+.||+||+|.++|+.||..|.
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~   83 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS   83 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence            3458999999999999999999999999999999995  335788999999999999999999999999774

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=3.4e-16  Score=133.39  Aligned_cols=72  Identities=29%  Similarity=0.458  Sum_probs=66.3

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (262)
Q Consensus        57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~  128 (262)
                      ....-|+|+||||+++++.+|||+|||+|+++|||||++.....++.|..|.+||+.|+|+..|++|..+|.
T Consensus        95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~  166 (230)
T KOG0721|consen   95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN  166 (230)
T ss_pred             HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence            344578999999999999999999999999999999998866778999999999999999999999999774

>PHA03102 Small T antigen; Reviewed

Probab=99.63  E-value=5.8e-16  Score=127.27  Aligned_cols=66  Identities=18%  Similarity=0.265  Sum_probs=60.7

Q ss_pred             cchhhhhCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           61 SSAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        61 ~~~Y~iLgl~~~a--s~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      +.+|+||||+++|  |..+||+|||++++++|||++++    +++|++|++||++|+|+.+|..||.+|.+.
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~   72 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDS   72 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence            5689999999999  99999999999999999999654    579999999999999999999999987654

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.61  E-value=1.1e-15  Score=150.26  Aligned_cols=72  Identities=28%  Similarity=0.490  Sum_probs=66.8

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDY  133 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~~  133 (262)
                      .|||+||||+++|+..+||++||+|+++||||+++. +.+.++|++|++||++|+|+.+|..||.++..++..
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d~   73 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVDR   73 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccccc
Confidence            579999999999999999999999999999999887 677889999999999999999999999998776653

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.61  E-value=1.4e-15  Score=137.92  Aligned_cols=73  Identities=27%  Similarity=0.466  Sum_probs=65.9

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc---hHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR---DSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (262)
Q Consensus        59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~  132 (262)
                      ..+|||+||||.++|+..||.+|||+|+.+||||...+.+   .|+.+|..|..|-+||+||++|+.+|. |.||.+
T Consensus       392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD  467 (504)
T KOG0624|consen  392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD  467 (504)
T ss_pred             ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence            3579999999999999999999999999999999988753   688999999999999999999999998 555554

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=4.8e-15  Score=126.30  Aligned_cols=68  Identities=34%  Similarity=0.537  Sum_probs=64.1

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCch-HHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEILTEYSRLEIIERE  126 (262)
Q Consensus        59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~~Yd~~  126 (262)
                      ...++|+||||.++|+..|||++||+++++||||+++.++. +.+.|+.|++||++|+|+.+|..||..
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            35689999999999999999999999999999999998775 899999999999999999999999985

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.50  E-value=5.6e-14  Score=118.13  Aligned_cols=65  Identities=15%  Similarity=0.220  Sum_probs=57.7

Q ss_pred             chhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCc-----hHHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836           62 SAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGR-----DSDALIRRIIQAYEILTEYSRLEIIERE  126 (262)
Q Consensus        62 ~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~  126 (262)
                      |||+||||++.  ++..+||++||+|++++|||+....+     .+.+.+..||+||++|+||.+|..|+-.
T Consensus         2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~   73 (171)
T PRK05014          2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS   73 (171)
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence            79999999996  68899999999999999999976543     2567899999999999999999999863

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.48  E-value=9.8e-14  Score=116.10  Aligned_cols=66  Identities=17%  Similarity=0.232  Sum_probs=57.4

Q ss_pred             cchhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCc---hHHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836           61 SSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGR---DSDALIRRIIQAYEILTEYSRLEIIERE  126 (262)
Q Consensus        61 ~~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~  126 (262)
                      .|||+||||++.  ++..+|+++||+|++++|||+.....   .+...+..|++||+||+||.+|..|+..
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~   72 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL   72 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            479999999986  78999999999999999999987532   2335678999999999999999999874

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.47  E-value=1.5e-13  Score=115.62  Aligned_cols=68  Identities=21%  Similarity=0.311  Sum_probs=60.0

Q ss_pred             CccchhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCch-----HHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836           59 STSSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIERE  126 (262)
Q Consensus        59 ~~~~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~Yd~~  126 (262)
                      ...+||++|||++.  .+..+|+++||+|++++|||++.+.+.     +.+.+..||+||++|+||.+|..|+-.
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~   76 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA   76 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            45689999999997  678999999999999999999876532     557899999999999999999999863

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.46  E-value=1.7e-13  Score=115.73  Aligned_cols=66  Identities=23%  Similarity=0.328  Sum_probs=57.7

Q ss_pred             ccchhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCchHH-----HHHHHHHHHHHHhcChhHHHHHHh
Q 024836           60 TSSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRDSD-----ALIRRIIQAYEILTEYSRLEIIER  125 (262)
Q Consensus        60 ~~~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~~a~-----~~f~~i~~Ay~~L~d~~~R~~Yd~  125 (262)
                      ..|||+||||++.  ++..+|+++||+|++++|||+....+.++     +.+..||+||++|+||.+|..|..
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            3689999999985  68999999999999999999987654433     446899999999999999999986

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.44  E-value=2.4e-13  Score=106.56  Aligned_cols=56  Identities=27%  Similarity=0.479  Sum_probs=50.5

Q ss_pred             CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhc
Q 024836           56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT  115 (262)
Q Consensus        56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~  115 (262)
                      ..|+..++|+||||+++++.+|||++||+|++++|||+.++    .+.|++|++||++|.
T Consensus        60 ~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~  115 (116)
T PTZ00100         60 NPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL  115 (116)
T ss_pred             CCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence            46777899999999999999999999999999999998533    578999999999995

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=2.2e-13  Score=127.08  Aligned_cols=69  Identities=26%  Similarity=0.445  Sum_probs=64.7

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (262)
Q Consensus        58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~  127 (262)
                      .+..|+|.+|||..+++.++||+.||++|...|||||.. +.|++.|+.|+.||++|+|+++|..||...
T Consensus       232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-~~A~Eafk~Lq~Afevig~~~kR~eYd~e~  300 (490)
T KOG0720|consen  232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-PRAEEAFKKLQVAFEVIGDSVKRKEYDLEL  300 (490)
T ss_pred             hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-hhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence            346899999999999999999999999999999999995 789999999999999999999999999853

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1.6e-13  Score=119.60  Aligned_cols=67  Identities=31%  Similarity=0.525  Sum_probs=61.8

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~  127 (262)
                      ..|.|+||||.++++..||++|||+|+++||||++++. ++.+.|+.|..||++|.|.+.|..||-..
T Consensus        32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~-e~k~~F~~iAtayeilkd~e~rt~ydyal   98 (329)
T KOG0722|consen   32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP-ESKKLFVKIATAYEILKDNETRTQYDYAL   98 (329)
T ss_pred             chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc-hhhhhhhhhhcccccccchhhHHhHHHHh
Confidence            46799999999999999999999999999999999985 45589999999999999999999999743

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=5.9e-13  Score=123.23  Aligned_cols=67  Identities=27%  Similarity=0.440  Sum_probs=63.5

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERE  126 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~  126 (262)
                      ..++|.|||+.+.++..|||++||++++.+|||++... .+++.+|++|.+||.||+||.+|..||..
T Consensus       372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg  439 (486)
T KOG0550|consen  372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG  439 (486)
T ss_pred             hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence            46899999999999999999999999999999999887 68899999999999999999999999984

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.34  E-value=1.4e-12  Score=116.96  Aligned_cols=60  Identities=30%  Similarity=0.463  Sum_probs=53.3

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-------chHHHHHHHHHHHHHHhcC
Q 024836           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-------RDSDALIRRIIQAYEILTE  116 (262)
Q Consensus        57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-------~~a~~~f~~i~~Ay~~L~d  116 (262)
                      .++..++|+||||++++|.+|||++||+|+++||||+..+.       +.++++|++|++||++|+.
T Consensus       196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            45668999999999999999999999999999999997532       3578999999999999975

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=2.1e-12  Score=114.99  Aligned_cols=71  Identities=30%  Similarity=0.497  Sum_probs=63.4

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      ..++|+||||.++|+..+||+||+++++++|||+++.. ..++.+|++|.+||++|+|+.+|..||+++.++
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~   73 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEG   73 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccc
Confidence            35799999999999999999999999999999998775 245568999999999999999999999988543

>PHA02624 large T antigen; Provisional

Probab=99.23  E-value=1.2e-11  Score=120.67  Aligned_cols=60  Identities=23%  Similarity=0.406  Sum_probs=55.9

Q ss_pred             ccchhhhhCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHH
Q 024836           60 TSSAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII  123 (262)
Q Consensus        60 ~~~~Y~iLgl~~~a--s~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y  123 (262)
                      ..++|++|||+++|  +..+||+|||+++++||||++++    +++|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence            46799999999999  99999999999999999999643    58999999999999999999998

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.18  E-value=2.8e-11  Score=112.89  Aligned_cols=69  Identities=25%  Similarity=0.381  Sum_probs=63.0

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-----chHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-----RDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~  128 (262)
                      .-|+|||||++.+++..+||++||+|+.++||||.+.-     .+-++.+++|++||+.|+|...|+.|-.+|.
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt  170 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT  170 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence            45799999999999999999999999999999998752     4677999999999999999999999999874

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.16  E-value=9.8e-11  Score=98.57  Aligned_cols=66  Identities=17%  Similarity=0.124  Sum_probs=57.6

Q ss_pred             cchhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCc-----hHHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836           61 SSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGR-----DSDALIRRIIQAYEILTEYSRLEIIERE  126 (262)
Q Consensus        61 ~~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~  126 (262)
                      .|||++|||++.  .+..+++++|++|++++|||+.....     .+.+....||+||.+|+||.+|..|=-.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~   74 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA   74 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence            579999999986  89999999999999999999987653     2445678999999999999999999653

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.01  E-value=7.6e-10  Score=91.87  Aligned_cols=55  Identities=20%  Similarity=0.209  Sum_probs=47.8

Q ss_pred             CCHHHHHHHHHHHHHhhCCCCCCCCc-----hHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836           73 CSAAELKAAFRAKVKQYHPDVNRDGR-----DSDALIRRIIQAYEILTEYSRLEIIEREC  127 (262)
Q Consensus        73 as~~eIK~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~  127 (262)
                      .+..+|+++||+|++++|||+.....     .+.+.+..||+||++|+||.+|..|+...
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l   62 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL   62 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence            57889999999999999999965432     26688999999999999999999998743

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=1.8e-09  Score=91.27  Aligned_cols=63  Identities=19%  Similarity=0.376  Sum_probs=58.0

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHH
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEI  122 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~  122 (262)
                      .-++|+||.|.+..+.++||+.||+|+...|||+|+++ +.|...|-.|..||..|-|+..|..
T Consensus        52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr  115 (250)
T KOG1150|consen   52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR  115 (250)
T ss_pred             ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            46799999999999999999999999999999999988 6788899999999999999986654

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=5.6e-09  Score=92.17  Aligned_cols=69  Identities=23%  Similarity=0.376  Sum_probs=60.4

Q ss_pred             ccchhhhhCCCC---CCCHHHHHHHHHHHHHhhCCCCCC--CCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836           60 TSSAYAILGVEP---SCSAAELKAAFRAKVKQYHPDVNR--DGRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (262)
Q Consensus        60 ~~~~Y~iLgl~~---~as~~eIK~ayr~l~~~~HPD~~~--~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~  128 (262)
                      +.|+|.+|||+.   .+.+.+|.++.++.+.+||||+..  ++....+.|+.|+.||+||+|+.+|..||....
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df  115 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF  115 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence            478999999986   588999999999999999999973  334567899999999999999999999998543

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1.1e-07  Score=96.45  Aligned_cols=60  Identities=28%  Similarity=0.501  Sum_probs=51.6

Q ss_pred             CCCCCCccchhhhhCCCCC----CCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcC
Q 024836           54 ASTPPSTSSAYAILGVEPS----CSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE  116 (262)
Q Consensus        54 ~~~~~~~~~~Y~iLgl~~~----as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d  116 (262)
                      .+..|+..+.|+||.|+-+    -..+.||++|++|+.+||||||++.   .++|.++++|||.|..
T Consensus      1274 KP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEG---RemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1274 KPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEG---REMFERVNKAYELLSS 1337 (2235)
T ss_pred             CCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHHHHHHH
Confidence            3467888999999999753    3558899999999999999999764   6899999999999983

>PF13459 Fer4_15: 4Fe-4S single cluster domain

Probab=98.46  E-value=7.7e-08  Score=68.03  Aligned_cols=57  Identities=32%  Similarity=0.610  Sum_probs=46.9

Q ss_pred             hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccC--------CCCchhHHHHHhhcCCccceEE
Q 024836          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQ--------GHGQDYRVQLAVGQCPRSCIHY  201 (262)
Q Consensus       141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q--------~~~~~~~vq~A~~~CP~~~I~~  201 (262)
                      +.+|...|+|+|   .|...+|..|.++.. |.+.+...        .......++.|+..||++||+|
T Consensus         1 V~vD~~~C~gcg---~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v   65 (65)
T PF13459_consen    1 VWVDRDRCIGCG---LCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV   65 (65)
T ss_pred             CEEecccCcCcc---HHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence            457889999998   899999999999766 67766542        3455678999999999999987

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=4.5e-07  Score=69.38  Aligned_cols=58  Identities=31%  Similarity=0.355  Sum_probs=51.7

Q ss_pred             CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcCh
Q 024836           56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEY  117 (262)
Q Consensus        56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~  117 (262)
                      +.|+....-.||||+++++.+.||+|+|+.+...|||+.+.+    -.-.+||||+++|...
T Consensus        51 ~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP----YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   51 PKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP----YLASKINEAKDLLEGT  108 (112)
T ss_pred             cccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH----HHHHHHHHHHHHHhcc
Confidence            678889999999999999999999999999999999998875    3346899999999643

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=4.9e-07  Score=78.38  Aligned_cols=56  Identities=34%  Similarity=0.535  Sum_probs=49.7

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHH-HhcC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYE-ILTE  116 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~-~L~d  116 (262)
                      -..+|.||||..+|+.++++.+|..|++++|||...+ ....++|.+|.+||. +|+.
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999999999999999999876 345689999999998 6654

>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A

Probab=98.37  E-value=1.2e-07  Score=65.68  Aligned_cols=56  Identities=30%  Similarity=0.603  Sum_probs=41.4

Q ss_pred             hhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCc--hhHHHHHhhcCCccceEE
Q 024836          143 VNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQ--DYRVQLAVGQCPRSCIHY  201 (262)
Q Consensus       143 v~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~--~~~vq~A~~~CP~~~I~~  201 (262)
                      ||...|+|+|   .|...+|..|.+++.+|.+.+..+..+.  ...++.|+..||+.||+|
T Consensus         1 VD~~~Ci~Cg---~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v   58 (58)
T PF13370_consen    1 VDRDKCIGCG---LCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIRV   58 (58)
T ss_dssp             E-TTT--S-S---HHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred             CChhhCcCCC---hHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence            4667899998   8999999999999888888887776544  457999999999999986

...

>COG1141 Fer Ferredoxin [Energy production and conversion]

Probab=98.25  E-value=7.4e-07  Score=63.50  Aligned_cols=58  Identities=28%  Similarity=0.550  Sum_probs=44.3

Q ss_pred             hhhhccccccCCCCCCCCCCCCCceeeecCCCcccc------ccC-CCCchhHHHHHhhcCCccceEEe
Q 024836          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARA------ISQ-GHGQDYRVQLAVGQCPRSCIHYV  202 (262)
Q Consensus       141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~------~~q-~~~~~~~vq~A~~~CP~~~I~~v  202 (262)
                      +.++...|+|+|   .|...+|..|.++.. |.+..      ... +-+....++.|+..||++||+|.
T Consensus         3 v~vDrd~Cigcg---~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~   67 (68)
T COG1141           3 VIVDRDTCIGCG---ACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVE   67 (68)
T ss_pred             EEechhhccccc---hhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEec
Confidence            457888999988   899999999999655 45532      111 11233679999999999999995

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00014  Score=59.51  Aligned_cols=67  Identities=21%  Similarity=0.250  Sum_probs=55.2

Q ss_pred             CccchhhhhCCCC--CCCHHHHHHHHHHHHHhhCCCCCCCC-----chHHHHHHHHHHHHHHhcChhHHHHHHh
Q 024836           59 STSSAYAILGVEP--SCSAAELKAAFRAKVKQYHPDVNRDG-----RDSDALIRRIIQAYEILTEYSRLEIIER  125 (262)
Q Consensus        59 ~~~~~Y~iLgl~~--~as~~eIK~ayr~l~~~~HPD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~  125 (262)
                      +..+||.++|...  ...+..++.-|....++.|||+....     ..+.+...++++||.+|.||-+|+.|=.
T Consensus         6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            4578999998764  46777888899999999999995432     2466778999999999999999999965

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.00051  Score=57.91  Aligned_cols=54  Identities=28%  Similarity=0.442  Sum_probs=46.9

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-------chHHHHHHHHHHHHHHh
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-------RDSDALIRRIIQAYEIL  114 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-------~~a~~~f~~i~~Ay~~L  114 (262)
                      .+.|.+||+...++..+|+++|+++...+|||+....       ..+.+.+++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            6799999999999999999999999999999985532       25678889999999854

>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues

Probab=96.58  E-value=0.0021  Score=45.33  Aligned_cols=59  Identities=25%  Similarity=0.472  Sum_probs=47.7

Q ss_pred             hhhhhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeC
Q 024836          138 ALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT  203 (262)
Q Consensus       138 ~~~iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~  203 (262)
                      ...+..|...|++.|   .|+..+|..|..... |-.   .........+..+++.||-.|+.++.
T Consensus         5 ~i~V~~d~~~C~hag---~Cv~~~p~VFd~~~~-~~v---~~d~a~~~~v~~~v~~CPSGAL~~~~   63 (64)
T PF06902_consen    5 DITVTWDRERCIHAG---FCVRGAPEVFDQDDE-PWV---SPDEASAEEVREAVDRCPSGALSYWD   63 (64)
T ss_pred             cEEEEECcCcccchh---hhhcCCCCcccCCCC-CcC---CcCccCHHHHHHHHHcCCccCcEEee
Confidence            346778899999999   899999999988554 333   44556678899999999999999865

These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.0026  Score=53.61  Aligned_cols=70  Identities=19%  Similarity=0.267  Sum_probs=53.4

Q ss_pred             hhhhhCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCch-----HHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836           63 AYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (262)
Q Consensus        63 ~Y~iLgl~~~a--s~~eIK~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~  132 (262)
                      +..++|+.+.+  ..+.++..|+.+++.+|||+....+.     +.+.+..++.||.+|.+|-+|..|=..-.+|..
T Consensus         3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~~   79 (174)
T COG1076           3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGLD   79 (174)
T ss_pred             cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccccc
Confidence            34444554433  45668999999999999999876543     345788999999999999999999876655543

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=96.11  E-value=0.012  Score=47.15  Aligned_cols=60  Identities=20%  Similarity=0.218  Sum_probs=42.5

Q ss_pred             CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhH
Q 024836           56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR  119 (262)
Q Consensus        56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~  119 (262)
                      ..|+......||+|++..+.++|.+.|.+|....+|++.+.    .-.-.+|..|.+.|..+.+
T Consensus        53 ~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El~  112 (127)
T PF03656_consen   53 KGMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQELK  112 (127)
T ss_dssp             ----HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHHH
Confidence            35888899999999999999999999999999999998654    3444578889998876543

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=95.83  E-value=0.011  Score=57.19  Aligned_cols=41  Identities=22%  Similarity=0.352  Sum_probs=30.1

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCCCCCCc-------hHHHHHHHHHHHHH
Q 024836           72 SCSAAELKAAFRAKVKQYHPDVNRDGR-------DSDALIRRIIQAYE  112 (262)
Q Consensus        72 ~as~~eIK~ayr~l~~~~HPD~~~~~~-------~a~~~f~~i~~Ay~  112 (262)
                      =.+.++||++||+..+..||||.++.+       -+++.|-.+.+|+.
T Consensus       399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn  446 (453)
T KOG0431|consen  399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWN  446 (453)
T ss_pred             ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999988753       23344444455544

>COG3592 Uncharacterized conserved protein [Function unknown]

Probab=93.38  E-value=0.059  Score=38.19  Aligned_cols=61  Identities=23%  Similarity=0.554  Sum_probs=47.8

Q ss_pred             cchhhhhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeC
Q 024836          136 CEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT  203 (262)
Q Consensus       136 ~~~~~iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~  203 (262)
                      ++.-|+..+...|.-.|   .|+.+.|+.|..    |+..=+-....+...++-.+++||-.|+.|+.
T Consensus        13 Gekidi~fn~~iC~Hs~---nCV~Gn~~vF~~----~rkPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~~   73 (74)
T COG3592          13 GEKIDIYFNTAICAHSG---NCVRGNPKVFNL----GRKPWIMPDAVDVEEIVKVIDTCPSGALKYRR   73 (74)
T ss_pred             cceEEEEeccceeeccc---ceecCCHhhccc----CCCCccCCCCCCHHHHHHHHHhCCchhhheec
Confidence            35567888888898888   899999999977    23334445566778899999999999999864

>PF13446 RPT: A repeated domain in UCH-protein

Probab=89.39  E-value=0.79  Score=31.62  Aligned_cols=30  Identities=30%  Similarity=0.510  Sum_probs=27.0

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHH
Q 024836           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVK   87 (262)
Q Consensus        58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~   87 (262)
                      |+..++|++|||+++.+.+.|-.+|+....
T Consensus         2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            455679999999999999999999998887

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=83.39  E-value=2.2  Score=36.60  Aligned_cols=41  Identities=24%  Similarity=0.240  Sum_probs=32.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChh
Q 024836           70 EPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYS  118 (262)
Q Consensus        70 ~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~  118 (262)
                      +++|+.+||.+|+.+|..+|--|        ++.-.+|..||+.|.=..
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~ILM~r   41 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAILMER   41 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999322        345678999999875443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	262
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		6e-07
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-06
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		3e-06
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		6e-06
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		8e-06
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		2e-05
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-05
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-05
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-05
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		5e-05
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		5e-05
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		6e-05
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		6e-04
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		8e-04
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		9e-04

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y +LGV+P  S  ELK A+R    ++HPD N DG +     ++I QAYE+L++  + +I 
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ---FKQISQAYEVLSDEKKRQIY 67
Query: 124 ER 125
           ++
Sbjct: 68  DQ 69

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEILTEYSRLEI 122
           Y IL V  S SA ++K A+R K  Q+HPD N D ++ ++   + + +AYE+L++  + EI
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 123 IER 125
            +R
Sbjct: 65  YDR 67

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
           YAILGV+P+     +K A+R   ++YHPDV+++  D++A  + + +A+E+L +  R
Sbjct: 31  YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQR 85

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
           YAI+GV+P+     +K A+R   ++YHPDV+++  D++A  + + +A+E+L++  R
Sbjct: 8   YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQR 62

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y +LGV+P+ +  ELK A+R    +YHPD N +  +     ++I QAYE+L++  + E+ 
Sbjct: 9   YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEK---FKQISQAYEVLSDAKKRELY 65
Query: 124 ER 125
           ++
Sbjct: 66  DK 67

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
           Y ILGV  S S  ++K AF     +YHPD N+   D++A  R I +AYE L++ +R
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANR 64

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV  +    E++ A++    +YHPD N+  ++++A  + I +AYE+LT+
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD 58

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
           Y ILGV  +    E++ A++    +YHPD N+  ++++A  + I +AYE+LT+  +
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV  +    E++ A++    +YHPD N+  ++++A  + I +AYE+LT+
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD 58

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEI 122
           Y +LGV+ S S  ++K A+R    ++HPD N D + +++   + + +AYE+L++  +  +
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 123 IERECIDPF 131
            +R   D +
Sbjct: 72  YDRAGCDSW 80

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LGV  + S A++K A++   +++HPD N+D    D  I +I +AYEIL+
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFI-QISKAYEILS 70

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV  + S  E+K A+    K+YHPD N+D   +     ++ +AYE+L++
Sbjct: 10  YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSD 62

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y  LG+    S  E+K A+R +  +YHPD N++   ++   + I +AY++L++  + EI 
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIF 64
Query: 124 ER 125
           +R
Sbjct: 65  DR 66

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 37/62 (59%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y +LG++ + ++ ++K ++R    +YHPD N D  ++    + I  A+ ILT+ ++  I 
Sbjct: 20  YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 124 ER 125
           ++
Sbjct: 80  DK 81

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y +LGV PS +  ELK  +R    +YHPD  +   D++   + I +A+EIL +  + EI 
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKF-KEISEAFEILNDPQKREIY 67
Query: 124 ER 125
           ++
Sbjct: 68  DQ 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	8e-15
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	2e-12
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	3e-12
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	8e-12
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-11
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	2e-11
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	2e-11
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	5e-11
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	6e-11
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-10
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	1e-10
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-10
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	1e-10
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	2e-10
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-10
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	3e-10
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	4e-10
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	1e-09
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-09
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	2e-09
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-09
2guz_A	71	Mitochondrial import inner membrane translocase su	3e-09
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	3e-09
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	6e-09
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	7e-09
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	1e-08
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-08
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	1e-07
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	2e-07
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	7e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	3e-06
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	5e-06
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	7e-05
1sj1_A	66	Ferredoxin; thermostability, iron-sulfur cluster,	1e-04
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	2e-04

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A Length = 64

 Score = 66.3 bits (162), Expect = 8e-15
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 138 ALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRS 197
           A   +V++  C+   C   CV+ AP AF+       A            V+ A+  CP  
Sbjct: 1   ARKFYVDQDECIA--CES-CVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQ 57

Query: 198 CIHYV 202
           CIH+ 
Sbjct: 58  CIHWE 62

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LGV  + + A++KAA+  +   YHPD N    ++     RI QAY +L 
Sbjct: 20  YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLG 71

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 19/52 (36%), Positives = 33/52 (63%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV  +    E++ A++    +YHPD N+  ++++A  + I +AYE+LT
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLT 57

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 59.8 bits (145), Expect = 8e-12
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LG +   S  ++ A F+ +  + HPD + +   +    +++ +A EILT
Sbjct: 23  YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILT 74

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV  + S  E+K A+    K+YHPD N+D   +     ++ +AYE+L+
Sbjct: 10  YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LG++ + ++ ++K ++R    +YHPD N D  ++    + I  A+ ILT
Sbjct: 20  YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILT 71

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 20/51 (39%), Positives = 36/51 (70%), Gaps = 1/51 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           YAILGV+P+     +K A+R   ++YHPDV+++  D++A  + + +A+E+L
Sbjct: 31  YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVL 80

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 56.4 bits (137), Expect = 5e-11
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           Y  LG+    S  E+K A+R +  +YHPD N++   ++   + I +AY++L
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVL 55

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 56.5 bits (137), Expect = 6e-11
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV  S S  ++K AF     +YHPD N+   D++A  R I +AYE L+
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLS 60

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRD------GRDSDALIRRIIQAYEIL 114
           Y+ILG +PS + ++LK  ++  +  YHPD            +       I QA++IL
Sbjct: 13  YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           Y +LGV  + S A++K A++   +++HPD N+D   ++    +I +AYEIL
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEIL 69

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV    S  +LK A+R    ++HPD N     +    + I  AY +L+ 
Sbjct: 10  YEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSN 61

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           + +LGV+P  S  E+  A+R      HPD        DA  + ++ A   L 
Sbjct: 30  WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAF-KAVVNARTALL 80

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LGV PS +  ELK  +R    +YHPD      +     + I +A+EIL 
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEK---FKEISEAFEILN 59

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 58.0 bits (140), Expect = 2e-10
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y++LGV  + S+ E++ AF+    + HPD N +  ++     +I +AYE+L 
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLK 56

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 54.2 bits (131), Expect = 3e-10
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           Y +LGV+P  S  ELK A+R    ++HPD N DG +     ++I QAYE+L
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ---FKQISQAYEVL 58

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRD------GRDSDALIRRIIQAYEIL 114
           Y+ILG +PS + ++LK  ++  +  YHPD            +       I QA++IL
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 64  YAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
             +LG+E S   +   ++ A+  K K++HPD   D    +  ++++   Y+ + +
Sbjct: 11  MDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED 61

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDS-DALIRRIIQAYEIL 114
           Y IL V  S SA ++K A+R K  Q+HPD N D ++  +   + + +AYE+L
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVL 56

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEIL 114
           Y +L V    S+  +K A+R    ++HPD N + + +++   +++ +AYE+L
Sbjct: 12  YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVL 63

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 56.3 bits (135), Expect = 3e-09
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           Y++LGV  + S+ E++ AF+    + HPD N +  ++     +I +AYE+L
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVL 74

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 51.6 bits (124), Expect = 3e-09
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 59  STSSAYAILGVEPSC-SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           ++  A  IL +  +  +  +LK   R  +   HPD       S  L  +I +A + L
Sbjct: 12  NSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG----GSPFLATKINEAKDFL 64

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNR-DGRDSDALIRRIIQAYEIL 114
           Y +LGV+ S S  ++K A+R    ++HPD N  +  +++   + + +AYE+L
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVL 63

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 64  YAILGVEP-SCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRR---IIQAYEIL 114
           Y +L V        +L  A+RA  +++HPD  ++  +      R   I  AYE L
Sbjct: 18  YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETL 72

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 50.9 bits (122), Expect = 7e-09
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEIL 114
            +++        +E K   R    ++HPD N +  D ++ + + +      L
Sbjct: 19  TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL 70

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 Length = 59

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIH 200
           + ++   C+G  C   CV+  P  F+       A   +     +   Q A+  CP   I 
Sbjct: 2   IVIDHEECIG--CES-CVELCPEVFAMIDGEEKAMVTAPDSTAE-CAQDAIDACPVEAIS 57

Query: 201 Y 201
            
Sbjct: 58  K 58

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 64  YAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
             +LG+E S       ++ A+  K K++HPD   D    +  ++++   Y+ + +
Sbjct: 14  MDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED 64

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 64  YAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDG-----RDSDALIRRIIQAYEIL 114
           + + G+          L   F+   +QYHPD    G       +      I QA++ L
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 44.9 bits (106), Expect = 7e-07
 Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 6/55 (10%)

Query: 64  YAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
             +L +          ++ A++ +    HPD         AL++ +   +     
Sbjct: 14  LELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKT 64

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG---RDSDALIRRIIQAYEILT 115
           Y ILGV+ +    E+  A+R    Q+HPD  ++    + ++     I  A E+L+
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 11/77 (14%)

Query: 57  PPSTSSAYAILGVEPSC-------SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQ 109
              TS+ Y +                + L+  +R    Q+HPD+ + G +  +    + Q
Sbjct: 7   RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSS---TLNQ 63

Query: 110 AYEILTE-YSRLEIIER 125
           AY  L +   R + + +
Sbjct: 64  AYHTLKDPLRRSQYMLK 80

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A Length = 60

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIH 200
           V V+   C+G G    C    P+ F      G A+ +          + A   CP   I 
Sbjct: 3   VRVDADACIGCG---VCENLCPDVFQLGDD-GKAKVLQPETDLP-CAKDAADSCPTGAIS 57

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A Length = 58

 Score = 39.0 bits (91), Expect = 7e-05
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 152 GCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIH 200
            C   CV+  P+ F  +     A  I+     D  V+ A+  CP   I 
Sbjct: 10  ACEA-CVEICPDVFEMNEEGDKAVVINPDSDLD-CVEEAIDSCPAEAIV 56

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A Length = 66

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDY---RVQLAVGQCPRS 197
           V V++  C+G      C    P+ F  +   G A+   +    +      + A+  CP S
Sbjct: 4   VSVDQDTCIGDA---ICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVS 59

Query: 198 CIH 200
            I 
Sbjct: 60  AIT 62

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 57  PPSTSSAYAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDG-----RDSDALIRRIIQ 109
           P  T   ++++    S     A+L+  ++   +  HPD            S+     +  
Sbjct: 39  PDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVND 98

Query: 110 AYEILTE-YSRLE-IIERECIDPFDYPECEALDVFVNEVL 147
           AY+ L    SR   +++   I+  +  + E    F+ E++
Sbjct: 99  AYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIM 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.86
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.85
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.85
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.85
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.84
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.83
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.83
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.83
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.83
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.83
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.83
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.82
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.82
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.81
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.8
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.77
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.77
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.75
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.74
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.72
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.72
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.71
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.7
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.7
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.69
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.68
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.67
2guz_A	71	Mitochondrial import inner membrane translocase su	99.66
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.62
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.62
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.6
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.59
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.57
2guz_B	65	Mitochondrial import inner membrane translocase su	99.11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.97
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	95.88
1iqz_A	81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	95.83
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	94.6
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	93.66
1sj1_A	66	Ferredoxin; thermostability, iron-sulfur cluster,	92.83
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	91.67
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	84.0

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=9.4e-22  Score=143.76  Aligned_cols=74  Identities=30%  Similarity=0.506  Sum_probs=68.2

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      .....++|+||||+++++.++||++||+|++++|||+++..+.+.+.|++|++||++|+||.+|..||.++..+
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            45567899999999999999999999999999999999877788999999999999999999999999987543

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=3.2e-21  Score=141.91  Aligned_cols=74  Identities=24%  Similarity=0.490  Sum_probs=67.0

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      ....++|+||||+++++.++||++||+|++++|||+++.. ..+++.|++|++||++|+||.+|..||.++..+.
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   80 (82)
T 2ej7_A            6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS   80 (82)
T ss_dssp             SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            3457899999999999999999999999999999999875 3678899999999999999999999999886553

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=4e-21  Score=140.12  Aligned_cols=73  Identities=27%  Similarity=0.436  Sum_probs=66.7

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      ..+..++|+||||+++++.++||++||+|++++|||++.. +.+.+.|++|++||++|+||.+|..||..+..+
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            3456789999999999999999999999999999999986 578899999999999999999999999977543

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.85  E-value=3e-21  Score=140.46  Aligned_cols=71  Identities=28%  Similarity=0.557  Sum_probs=65.3

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~  132 (262)
                      .++|+||||+++++.++||++||+|++++|||+++. +.+.+.|+.|++||++|+||.+|..||.++..++.
T Consensus         3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   73 (77)
T 1hdj_A            3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence            479999999999999999999999999999999986 56889999999999999999999999998765543

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=6.5e-21  Score=145.33  Aligned_cols=72  Identities=29%  Similarity=0.433  Sum_probs=67.2

Q ss_pred             CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836           56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (262)
Q Consensus        56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~  127 (262)
                      ..+...+||+||||+++++.++||+|||+|+++||||+++..+.+.++|++|++||++|+||.+|..||...
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A           12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            456778999999999999999999999999999999999877788999999999999999999999999853

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=1.9e-20  Score=139.73  Aligned_cols=71  Identities=28%  Similarity=0.497  Sum_probs=65.8

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        59 ~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      ...++|+||||+++++.++||++||+|++++|||+++. +.+++.|++|++||++|+||.+|..||.++..+
T Consensus        15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            45689999999999999999999999999999999987 568899999999999999999999999987653

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.83  E-value=1.1e-20  Score=136.18  Aligned_cols=68  Identities=35%  Similarity=0.613  Sum_probs=61.8

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (262)
Q Consensus        58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~  128 (262)
                      ....++|+||||+++++.++||++||+|++++|||++++.   .+.|++|++||++|+||.+|..||.+|.
T Consensus         5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            3457899999999999999999999999999999998764   5889999999999999999999999774

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=6.3e-21  Score=148.60  Aligned_cols=77  Identities=21%  Similarity=0.337  Sum_probs=70.2

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCCCc
Q 024836           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYP  134 (262)
Q Consensus        58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~~~  134 (262)
                      ....+||+||||+++++.++||+|||+|++++|||++++++.+.++|++|++||++|+||.+|..||.++..++..+
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~   93 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMSMP   93 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCSSC
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccCCC
Confidence            44678999999999999999999999999999999999777899999999999999999999999999876665533

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.2e-20  Score=140.80  Aligned_cols=72  Identities=36%  Similarity=0.525  Sum_probs=66.0

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      ....+||+||||+++++.++||++||+|++++|||+++. +.+.++|++|++||++|+||.+|..||..+..+
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANRRKEYDTLGHSA   75 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            456789999999999999999999999999999999985 678899999999999999999999999976443

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=2.1e-20  Score=144.97  Aligned_cols=73  Identities=26%  Similarity=0.449  Sum_probs=67.5

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCC
Q 024836           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID  129 (262)
Q Consensus        57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~  129 (262)
                      .....++|+||||+++++.++||++||+|++++|||+++..+.+.++|++|++||++|+||.+|..||.++..
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   85 (109)
T 2ctw_A           13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL   85 (109)
T ss_dssp             TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence            3456789999999999999999999999999999999988778899999999999999999999999997744

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.5e-20  Score=141.40  Aligned_cols=75  Identities=27%  Similarity=0.561  Sum_probs=67.9

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (262)
Q Consensus        58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~  132 (262)
                      ....+||+||||+++++.++||++||+|++++|||+++.. +.++++|++|++||++|+||.+|..||..+..++.
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   81 (92)
T 2dmx_A            6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR   81 (92)
T ss_dssp             CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            3457899999999999999999999999999999999865 46789999999999999999999999998876654

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.82  E-value=2.3e-20  Score=140.65  Aligned_cols=72  Identities=24%  Similarity=0.360  Sum_probs=65.4

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC------chHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG------RDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (262)
Q Consensus        57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~  128 (262)
                      .+...++|+||||+++++.++||+|||+|++++|||+++..      +.+.+.|++|++||++|+||.+|..||....
T Consensus        12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            45678999999999999999999999999999999998743      4678999999999999999999999998654

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.82  E-value=6.6e-21  Score=146.27  Aligned_cols=72  Identities=28%  Similarity=0.552  Sum_probs=67.3

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~  132 (262)
                      .++|+||||+++++.++||++||+|++++|||+++..+.++++|++|++||++|+||.+|..||..+..++.
T Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   74 (103)
T 1bq0_A            3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (103)
T ss_dssp             CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence            579999999999999999999999999999999987678899999999999999999999999998876554

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.81  E-value=5.8e-20  Score=138.22  Aligned_cols=68  Identities=31%  Similarity=0.550  Sum_probs=62.8

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (262)
Q Consensus        58 ~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~  128 (262)
                      +...++|+||||+++++.++||++||+|++++|||+++..   .++|++|++||++|+||.+|..||.++.
T Consensus         5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   72 (92)
T 2o37_A            5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGL   72 (92)
T ss_dssp             CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred             ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence            4567899999999999999999999999999999999764   5699999999999999999999999764

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.80  E-value=3.4e-20  Score=141.38  Aligned_cols=71  Identities=35%  Similarity=0.552  Sum_probs=63.9

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      .|||+||||+++++.++||++||+|++++|||+++.. ..+++.|++|++||++|+||.+|..||..+..++
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~   73 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGL   73 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC--
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            4799999999999999999999999999999999865 3578999999999999999999999999765544

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.77  E-value=1.6e-19  Score=139.79  Aligned_cols=73  Identities=23%  Similarity=0.290  Sum_probs=65.8

Q ss_pred             CCccchhhhhCCCCCC-CHHHHHHHHHHHHHhhCCCCCCC---CchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           58 PSTSSAYAILGVEPSC-SAAELKAAFRAKVKQYHPDVNRD---GRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        58 ~~~~~~Y~iLgl~~~a-s~~eIK~ayr~l~~~~HPD~~~~---~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      ....++|+||||++++ +.++||+|||+|++++|||++++   .+.+.+.|++|++||++|+||.+|..||..+.++
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~   88 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP   88 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence            3457899999999999 99999999999999999999986   3567899999999999999999999999977543

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.77  E-value=6.8e-19  Score=149.83  Aligned_cols=72  Identities=24%  Similarity=0.415  Sum_probs=67.2

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~  132 (262)
                      .|||+||||+++|+.++||+|||+|++++|||++++.+.+.++|++|++||++|+||.+|..||.+|..+..
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~   73 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   73 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence            479999999999999999999999999999999987788999999999999999999999999998866543

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=141.50  Aligned_cols=71  Identities=24%  Similarity=0.360  Sum_probs=64.3

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc------hHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR------DSDALIRRIIQAYEILTEYSRLEIIEREC  127 (262)
Q Consensus        57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~------~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~  127 (262)
                      .+...|||+||||+++++.++||+|||+|++++|||+++...      .+.+.|++|++||++|+||.+|..||..+
T Consensus         6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~   82 (155)
T 2l6l_A            6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR   82 (155)
T ss_dssp             CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred             cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            455679999999999999999999999999999999998753      36789999999999999999999999753

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=1.2e-18  Score=130.47  Aligned_cols=61  Identities=23%  Similarity=0.395  Sum_probs=56.7

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHH
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLE  121 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~  121 (262)
                      ..++|+||||+++++.++||+|||+|+++||||+++. +.+.+.|++|++||++|+|+.+|.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCccccc
Confidence            4679999999999999999999999999999999987 567899999999999999998874

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.72  E-value=3.7e-19  Score=138.91  Aligned_cols=64  Identities=19%  Similarity=0.331  Sum_probs=59.3

Q ss_pred             ccchhhhhCCCCCCCH--HHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836           60 TSSAYAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~--~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~  127 (262)
                      ..++|+||||+++++.  ++||+|||+|++++|||++++    +++|++|++||++|+||.+|..||.++
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~   72 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFG   72 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence            4689999999999998  999999999999999999876    478999999999999999999999765

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.72  E-value=3.8e-18  Score=124.79  Aligned_cols=65  Identities=11%  Similarity=0.127  Sum_probs=57.2

Q ss_pred             ccchhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCC
Q 024836           60 TSSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID  129 (262)
Q Consensus        60 ~~~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~  129 (262)
                      ..++|+||||+++  ++.++||+|||+|++++|||++++    .++|++|++||++|+|+.+|..+ .+|..
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~-~~g~~   76 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRM-NLGGT   76 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTT-CCSSC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHH-hcCCc
Confidence            4679999999999  999999999999999999999764    57899999999999999999873 34433

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.71  E-value=3.8e-18  Score=127.27  Aligned_cols=66  Identities=14%  Similarity=0.177  Sum_probs=59.8

Q ss_pred             CCCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-chHHHHHHHHHHHHHHhcChhHH
Q 024836           55 STPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRL  120 (262)
Q Consensus        55 ~~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R  120 (262)
                      +.++...++|+||||+++|+.+|||+|||+|+++||||+++++ ..++++|++|++||++|+|...|
T Consensus        10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            3567788999999999999999999999999999999999876 35789999999999999988665

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.70  E-value=2.6e-17  Score=141.17  Aligned_cols=83  Identities=17%  Similarity=0.234  Sum_probs=68.3

Q ss_pred             CCCccccccccCCCCCCCCCCccchhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCc-----hHHHHHHHHHHHH
Q 024836           39 PSKFTVNCTERTGENASTPPSTSSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGR-----DSDALIRRIIQAY  111 (262)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay  111 (262)
                      ...++..|....     ++....|||+||||+++  ++..+||++||+|++++|||++++.+     .+.++|++|++||
T Consensus        26 ~~~fC~~c~~~q-----~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY  100 (207)
T 3bvo_A           26 DRFFCPQCRALQ-----APDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAY  100 (207)
T ss_dssp             CCCBCTTTCCBC-----CCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccC-----CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            345566666544     23346799999999986  79999999999999999999998653     2557899999999


Q ss_pred             HHhcChhHHHHHHhc
Q 024836          112 EILTEYSRLEIIERE  126 (262)
Q Consensus       112 ~~L~d~~~R~~Yd~~  126 (262)
                      +||+||.+|..||..
T Consensus       101 ~vLsdp~~R~~Yd~~  115 (207)
T 3bvo_A          101 KTLLAPLSRGLYLLK  115 (207)
T ss_dssp             HHHHSHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHH
Confidence            999999999999963

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.69  E-value=1.4e-18  Score=158.66  Aligned_cols=71  Identities=30%  Similarity=0.563  Sum_probs=0.0

Q ss_pred             CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836           56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (262)
Q Consensus        56 ~~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~  127 (262)
                      ..|..+|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+||.+|..||+++
T Consensus        23 ~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~   93 (329)
T 3lz8_A           23 NAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLW   93 (329)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             ccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence            45667899999999999999999999999999999999986 478899999999999999999999999973

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.68  E-value=5.2e-18  Score=141.30  Aligned_cols=65  Identities=18%  Similarity=0.296  Sum_probs=57.6

Q ss_pred             ccchhhhhCCCCCCC--HHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCC
Q 024836           60 TSSAYAILGVEPSCS--AAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as--~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~  128 (262)
                      ..++|+||||+++|+  .++||+|||+|++++|||++++    +++|++|++||++|+||.+|+.||++|.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            468999999999998  6999999999999999999876    3689999999999999999999999874

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.67  E-value=4.2e-17  Score=135.94  Aligned_cols=66  Identities=20%  Similarity=0.248  Sum_probs=60.7

Q ss_pred             chhhhhCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCch-----HHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836           62 SAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIEREC  127 (262)
Q Consensus        62 ~~Y~iLgl~~~a--s~~eIK~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~  127 (262)
                      |||+||||++++  +..+||++||+|+++||||++++.+.     +.+.|+.|++||++|+||.+|..||...
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            799999999999  99999999999999999999987542     4579999999999999999999999853

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.66  E-value=3.6e-17  Score=117.14  Aligned_cols=61  Identities=21%  Similarity=0.254  Sum_probs=54.2

Q ss_pred             CCCCccchhhhhCCCC-CCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHH
Q 024836           56 TPPSTSSAYAILGVEP-SCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRL  120 (262)
Q Consensus        56 ~~~~~~~~Y~iLgl~~-~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R  120 (262)
                      ..|+..++|+||||++ +++.++||++||+|++++|||++++    .+.|++|++||++|+++..|
T Consensus         9 ~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A            9 PKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             SSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhhc
Confidence            4577889999999999 7999999999999999999999643    46999999999999987543

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.62  E-value=3.7e-17  Score=136.96  Aligned_cols=63  Identities=13%  Similarity=0.255  Sum_probs=58.3

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCch---HHHHHHHHHHHHHHhcChhHHHHH
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD---SDALIRRIIQAYEILTEYSRLEII  123 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~---a~~~f~~i~~Ay~~L~d~~~R~~Y  123 (262)
                      .++|+||||+++++.++||+|||+|++++|||++++...   ++++|++|++||++|+|+.+|..|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            589999999999999999999999999999999986543   789999999999999999998765

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.62  E-value=7e-17  Score=121.11  Aligned_cols=56  Identities=13%  Similarity=0.241  Sum_probs=51.2

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc---hHHHHHHHHHHHHHHhcC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR---DSDALIRRIIQAYEILTE  116 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d  116 (262)
                      .++|++|||++.|+.+|||+|||+|+++||||++++.+   .++++|+.|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            36899999999999999999999999999999998754   378899999999999974

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.60  E-value=3.8e-16  Score=131.20  Aligned_cols=66  Identities=21%  Similarity=0.279  Sum_probs=59.0

Q ss_pred             Cccchhhhh------CCCC-CCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836           59 STSSAYAIL------GVEP-SCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (262)
Q Consensus        59 ~~~~~Y~iL------gl~~-~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~  127 (262)
                      ...|||+||      |+++ +++..+||++||+|++++|||++++   +.+.|+.|++||++|+||.+|..||...
T Consensus         9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            346899999      4665 8999999999999999999999876   4678999999999999999999999843

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.59  E-value=1.5e-16  Score=159.37  Aligned_cols=74  Identities=23%  Similarity=0.371  Sum_probs=40.7

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCC
Q 024836           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (262)
Q Consensus        57 ~~~~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~  130 (262)
                      .....|||+||||+++|+.++||+|||+|++++|||++++.+.+.++|++|++||++|+||.+|+.||++|..+
T Consensus        17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~   90 (780)
T 3apo_A           17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG   90 (780)
T ss_dssp             ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC----
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccc
Confidence            34467899999999999999999999999999999999876788999999999999999999999999987654

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.57  E-value=2.9e-16  Score=120.97  Aligned_cols=57  Identities=9%  Similarity=0.186  Sum_probs=50.9

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC---c----hHHHHHHHHHHHHHHhcChh
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG---R----DSDALIRRIIQAYEILTEYS  118 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~---~----~a~~~f~~i~~Ay~~L~d~~  118 (262)
                      .+||+|||++. |+.++||+|||+|++++|||++++.   +    .++++|+.|++||++|+|+.
T Consensus        41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            57999999996 9999999999999999999998642   1    46899999999999999975

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.11  E-value=7.6e-11  Score=82.57  Aligned_cols=56  Identities=16%  Similarity=0.122  Sum_probs=49.0

Q ss_pred             CCccchhhhhCCCCC---CCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcCh
Q 024836           58 PSTSSAYAILGVEPS---CSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEY  117 (262)
Q Consensus        58 ~~~~~~Y~iLgl~~~---as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~  117 (262)
                      |+..+.|.||||+++   ++.++|+++||+|+..+|||+.+.    ......|++|+++|...
T Consensus         1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHHH
Confidence            355679999999999   999999999999999999999655    46778999999999654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.97  E-value=2.4e-10  Score=104.12  Aligned_cols=65  Identities=25%  Similarity=0.389  Sum_probs=55.6

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC---chHHHHHHHHHHHHHHhcChhHHHHHHh
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG---RDSDALIRRIIQAYEILTEYSRLEIIER  125 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~  125 (262)
                      .++|++||+.+.++.++|+++|+++++++|||+.+.+   ..+++.|++|++||++|+|+++|..||+
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            3689999999999999999999999999999998764   3578899999999999999999999997

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A

Probab=95.88  E-value=0.0022  Score=43.09  Aligned_cols=60  Identities=28%  Similarity=0.548  Sum_probs=41.9

Q ss_pred             hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeC
Q 024836          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT  203 (262)
Q Consensus       141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~  203 (262)
                      +.+|...|+|+|   .|+..+|..|.+....|.+.........-......+..||.+||.+..
T Consensus         4 ~~id~~~C~~Cg---~C~~~CP~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~   63 (64)
T 1dax_A            4 FYVDQDECIACE---SCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED   63 (64)
T ss_dssp             CEECSTTCCSCC---HHHHHCTTTEEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECCC
T ss_pred             EEEccccCCCch---HHHHhCCccEeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeeec
Confidence            567888999988   788888888888654344443321123334567889999999999764

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*

Probab=95.83  E-value=0.0029  Score=44.82  Aligned_cols=61  Identities=21%  Similarity=0.368  Sum_probs=43.0

Q ss_pred             hhhhhccccccCCCCCCCCCCCCCceeeecCCCccccccC------C--CCchhHHHHHhhcCCccceEEeCc
Q 024836          140 DVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQ------G--HGQDYRVQLAVGQCPRSCIHYVTP  204 (262)
Q Consensus       140 ~iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q------~--~~~~~~vq~A~~~CP~~~I~~v~~  204 (262)
                      .+.+|...|+|+|   .|+..+|..|.++. .|.+.....      .  .+........+..||++||++...
T Consensus         3 ~v~vd~~~CigCg---~C~~~CP~~~~~~~-~g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~~~   71 (81)
T 1iqz_A            3 YTIVDKETCIACG---ACGAAAPDIYDYDE-DGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADE   71 (81)
T ss_dssp             EEEECTTTCCCCS---HHHHHCTTTEEECT-TSCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESS
T ss_pred             EEEEecccCcccC---hhhHhCchheeeCC-CCeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEecC
Confidence            3568889999988   78899999998853 344443321      0  122344678999999999999764

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1

Probab=94.60  E-value=0.018  Score=37.44  Aligned_cols=58  Identities=22%  Similarity=0.403  Sum_probs=37.3

Q ss_pred             hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEe
Q 024836          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYV  202 (262)
Q Consensus       141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v  202 (262)
                      +.++...|+|+|   .|+..+|..|.+....|..... .....-..-...+..||.+||.|.
T Consensus         2 i~i~~~~C~~C~---~C~~~Cp~~~~~~~~~~~~~~~-~~~~~c~~C~~C~~~CP~~Ai~~~   59 (59)
T 1dwl_A            2 IVIDHEECIGCE---SCVELCPEVFAMIDGEEKAMVT-APDSTAECAQDAIDACPVEAISKE   59 (59)
T ss_dssp             EEESSCCCSSCC---GGGGTSTTTEEEEECSSCEEES-CTTCCCGGGGTGGGGSTTCCEEEC
T ss_pred             eEEChhhCcChh---HHHHHCCHHheecCCCCcEEEe-cChhhhhHHHHHHHhCCHhhEEcC
Confidence            356777899987   7889999888873333443331 011112234467899999999874

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A

Probab=93.66  E-value=0.061  Score=34.87  Aligned_cols=57  Identities=25%  Similarity=0.463  Sum_probs=37.6

Q ss_pred             hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEe
Q 024836          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYV  202 (262)
Q Consensus       141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v  202 (262)
                      +.++...|+|+|   .|+..+|..|.++.. |...... ....-......+..||.+||.+.
T Consensus         3 ~~i~~~~C~~C~---~C~~~Cp~~~~~~~~-~~~~~~~-~~~~c~~C~~C~~~CP~~Ai~~~   59 (60)
T 1rof_A            3 VRVDADACIGCG---VCENLCPDVFQLGDD-GKAKVLQ-PETDLPCAKDAADSCPTGAISVE   59 (60)
T ss_dssp             SEECTTTCCSCC---SSTTTCTTTBCCCSS-SCCCBSC-SSCCSTTHHHHHHHCTTCCEECC
T ss_pred             EEEchhhCCCCh---HHHHhCcHHHeECCC-CCEeecC-chhhHHHHHHHHHhCCHhHEEEe
Confidence            456778899987   899999987776432 3332221 11222234578899999999875

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A

Probab=92.83  E-value=0.041  Score=36.45  Aligned_cols=59  Identities=24%  Similarity=0.416  Sum_probs=39.3

Q ss_pred             hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCc---hhHHHHHhhcCCccceEEeC
Q 024836          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQ---DYRVQLAVGQCPRSCIHYVT  203 (262)
Q Consensus       141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~---~~~vq~A~~~CP~~~I~~v~  203 (262)
                      +.+|...|+|+|   .|+..+|..|.++. .|......+....   .......+..||.+||.+..
T Consensus         4 ~~id~~~C~~C~---~C~~~Cp~~~~~~~-~~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~~~   65 (66)
T 1sj1_A            4 VSVDQDTCIGDA---ICASLCPDVFEMND-EGKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE   65 (66)
T ss_dssp             EEECTTTCCCCC---HHHHHCTTTEEECT-TSCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred             EEECcccCcCch---HHHHhCCceEEECC-CCceeecccCCCcHHHHHHHHHHHhhCCHhhEEEec
Confidence            567888999987   78888888888743 3444333221112   12346788999999999853

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A

Probab=91.67  E-value=0.046  Score=35.44  Aligned_cols=56  Identities=23%  Similarity=0.423  Sum_probs=36.6

Q ss_pred             hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEE
Q 024836          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHY  201 (262)
Q Consensus       141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~  201 (262)
                      +.++ ..|+|+|   .|+..+|..|.+.. .|......+....-..-...+..||.+||.+
T Consensus         2 v~id-~~C~~C~---~C~~~CP~~~~~~~-~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~   57 (58)
T 1f2g_A            2 IEVN-DDCMACE---ACVEICPDVFEMNE-EGDKAVVINPDSDLDCVEEAIDSCPAEAIVR   57 (58)
T ss_dssp             CBCT-TTCCCCC---HHHHHCTTTEEECS-SSSSEEESCTTCCSTHHHHHHHTCSSCCCBC
T ss_pred             cEEC-CcCccch---HHHHhCCccEEECC-CCcEEEeCCCccchHHHHHHHhhCChhhEEe
Confidence            3466 7899987   78888888777743 2333332211223344677899999999976

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=84.00  E-value=0.41  Score=46.63  Aligned_cols=44  Identities=16%  Similarity=0.148  Sum_probs=35.0

Q ss_pred             chhhhhCCCCCCCH--HHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHH
Q 024836           62 SAYAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEI  113 (262)
Q Consensus        62 ~~Y~iLgl~~~as~--~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~  113 (262)
                      ++|.+||++.+...  .+|+++||+|++..+++        .+++..|..|+.|
T Consensus       630 ~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          630 STNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV  675 (681)
T ss_dssp             SSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred             CCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence            48999999766544  77999999999966544        4788888888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	6e-09
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-08
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	2e-08
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	3e-07
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	4e-07
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	6e-07
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	3e-06
d1fxra_	64	d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacte	2e-05
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	0.002

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.9 bits (119), Expect = 6e-09
 Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 3/57 (5%)

Query: 62  SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDAL---IRRIIQAYEILT 115
           + +  +G+    +  ++K  +R  V   HPD                 +  A+    
Sbjct: 34  TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 90

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDAL------IRRIIQAYEILT 115
           Y+ILG +PS + ++LK  ++  +  YHPD       +  +         I QA++IL 
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 47.7 bits (113), Expect = 2e-08
 Identities = 19/52 (36%), Positives = 33/52 (63%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV  +    E++ A++    +YHPD N+  ++++A  + I +AYE+LT
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLT 57

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 3e-07
 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 63  AYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEIL 114
             +++        +E K   R    ++HPD N +    ++ + + +      L
Sbjct: 18  VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL 70

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 44.6 bits (105), Expect = 4e-07
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 7/59 (11%)

Query: 64  YAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDGRDSD-----ALIRRIIQAYEILT 115
           + + G+          L   F+   +QYHPD    G  ++          I QA++ L 
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 44.2 bits (104), Expect = 6e-07
 Identities = 5/57 (8%), Positives = 16/57 (28%), Gaps = 6/57 (10%)

Query: 62  SAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
               +L +          ++ A++ +    HPD           ++ +   +     
Sbjct: 12  RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHAL----MQELNSLWGTFKT 64

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 3e-06
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y  LG+    S  E+K A+R +  +YHPD N++    +   + I +AY++L++  + EI 
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEK-FKEIAEAYDVLSDPRKREIF 64

Query: 124 ER 125
           +R
Sbjct: 65  DR 66

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]

 Score = 39.4 bits (91), Expect = 2e-05
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 138 ALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRS 197
           A   +V++  C+       CV+ AP AF+       A            V+ A+  CP  
Sbjct: 1   ARKFYVDQDECIACES---CVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQ 57

Query: 198 CIHYV 202
           CIH+ 
Sbjct: 58  CIHWE 62

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 63  AYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
              +LG+E S   +   ++ A+  K K++HPD   D       ++++   Y+ +
Sbjct: 10  LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK----MKKMNTLYKKM 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.9
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.83
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.78
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.73
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.71
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.62
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.6
d1fxra_	64	Ferredoxin I {Sulfate-reducing bacteria (Desulfovi	98.79
d1iqza_	81	Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1	97.81
d1fxda_	58	Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}	97.76
d1sj1a_	66	Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI	97.41
d1vjwa_	59	Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	97.03

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=5.4e-24  Score=152.78  Aligned_cols=73  Identities=27%  Similarity=0.545  Sum_probs=68.7

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~  132 (262)
                      .+|||+||||+++||.+|||+|||+|++++|||++++++.+++.|+.|++||+||+||.+|..||++|..+|.
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~e   74 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSCC
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccccC
Confidence            4689999999999999999999999999999999998788889999999999999999999999999887663

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.3e-22  Score=144.88  Aligned_cols=72  Identities=28%  Similarity=0.530  Sum_probs=66.5

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCCCC
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDY  133 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f~~  133 (262)
                      +|||+||||+++|+.++||+||++|++++|||++.. +.+.++|+.|++||+||+||.+|+.||++|.+++.+
T Consensus         3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~-~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~g   74 (77)
T d1hdja_           3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccc-hhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcC
Confidence            589999999999999999999999999999999987 567889999999999999999999999988776643

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=2.8e-21  Score=144.24  Aligned_cols=72  Identities=25%  Similarity=0.392  Sum_probs=64.7

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC------chHHHHHHHHHHHHHHhcChhHHHHHHhcCCCCC
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG------RDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~f  131 (262)
                      .+|||+||||+++++.++||+||++|+++||||++...      ..++++|+.|++||+||+||.+|+.||.....++
T Consensus        15 ~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~   92 (94)
T d1wjza_          15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGPS   92 (94)
T ss_dssp             CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCSC
T ss_pred             ccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccCCCC
Confidence            46899999999999999999999999999999998764      3577899999999999999999999998765543

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.78  E-value=1e-20  Score=146.07  Aligned_cols=66  Identities=18%  Similarity=0.273  Sum_probs=59.8

Q ss_pred             ccchhhhhCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcCCC
Q 024836           60 TSSAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID  129 (262)
Q Consensus        60 ~~~~Y~iLgl~~~a--s~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~  129 (262)
                      ..++|+||||+++|  +.++||+|||+||+++|||++++.    ++|++|++||+||+|+.+|..||..+..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~----e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT----TTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH----HHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            36899999999998  788999999999999999998763    5799999999999999999999987543

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.73  E-value=9.4e-19  Score=126.03  Aligned_cols=64  Identities=11%  Similarity=0.157  Sum_probs=58.6

Q ss_pred             ccchhhhhCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHhcChhHHHHHHhcC
Q 024836           60 TSSAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (262)
Q Consensus        60 ~~~~Y~iLgl~~~a--s~~eIK~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~  127 (262)
                      ..++|+||||++++  +.++||+|||+|++++|||++++    +++|++|++||++|+|+.+|..||..+
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~----~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC----HHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            46899999999987  99999999999999999999765    478999999999999999999999754

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=5.6e-18  Score=121.24  Aligned_cols=65  Identities=20%  Similarity=0.248  Sum_probs=57.6

Q ss_pred             chhhhhCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCc-----hHHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836           62 SAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGR-----DSDALIRRIIQAYEILTEYSRLEIIERE  126 (262)
Q Consensus        62 ~~Y~iLgl~~~--as~~eIK~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~  126 (262)
                      |||+||||+++  ++.++||++||++++++|||+..+.+     .+.+.|+.|++||+||+||.+|..|+..
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~   73 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            79999999985  45899999999999999999977543     3568899999999999999999999863

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.8e-17  Score=117.92  Aligned_cols=64  Identities=13%  Similarity=0.246  Sum_probs=56.5

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc-hHHHHHHHHHHHHHHhcChhHHHHHHhc
Q 024836           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIERE  126 (262)
Q Consensus        60 ~~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~  126 (262)
                      .+++|+||||..+++.+|||+|||+|+++||||+++++. .+.+.|+.|++||++|+   ++..||+.
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~---~~~~~d~~   79 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAFLDQN   79 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHH---HHTTCSSS
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH---HHHHhhcc
Confidence            478999999999999999999999999999999998764 57899999999999996   45556553

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=3e-17  Score=122.94  Aligned_cols=63  Identities=13%  Similarity=0.255  Sum_probs=57.1

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc---hHHHHHHHHHHHHHHhcChhHHHHH
Q 024836           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR---DSDALIRRIIQAYEILTEYSRLEII  123 (262)
Q Consensus        61 ~~~Y~iLgl~~~as~~eIK~ayr~l~~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d~~~R~~Y  123 (262)
                      .+.|++|||+..++.++||+|||++++++|||++++..   .+++.|+.|++||++|+||.+|..|
T Consensus        33 ~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             ccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            35799999999999999999999999999999987653   3778999999999999999999766

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]

Probab=98.79  E-value=6.6e-10  Score=75.72  Aligned_cols=62  Identities=27%  Similarity=0.522  Sum_probs=56.8

Q ss_pred             hhhhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEeC
Q 024836          139 LDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT  203 (262)
Q Consensus       139 ~~iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v~  203 (262)
                      ..+|||+..|+|+|   .|+..+|..|.+....|.+++..+..+.......+++.||++||+|++
T Consensus         2 ~~~~VD~~~CigCg---~C~~~cP~~f~~~~~~~~~~~~~~~~~~c~~c~~c~~~CP~~aI~~~e   63 (64)
T d1fxra_           2 RKFYVDQDECIACE---SCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED   63 (64)
T ss_dssp             CEEEECTTTCCCCC---HHHHHCTTTEEEETTTTEEEESCTTSSCHHHHHHHHHHCTTCCEEEEC
T ss_pred             CeEEEchhhCccCC---CccccCcCeEEEecCCCeeeeeccCCCcchhHHHHHhcCCcccEEEEe
Confidence            35899999999998   899999999999988899998888888888999999999999999986

>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin
species: Bacillus thermoproteolyticus [TaxId: 1427]

Probab=97.81  E-value=2.4e-06  Score=60.18  Aligned_cols=61  Identities=21%  Similarity=0.395  Sum_probs=47.6

Q ss_pred             hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCC--------CchhHHHHHhhcCCccceEEeCcc
Q 024836          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGH--------GQDYRVQLAVGQCPRSCIHYVTPS  205 (262)
Q Consensus       141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~--------~~~~~vq~A~~~CP~~~I~~v~~~  205 (262)
                      ++||...|+|||   .|+..+|..|.+.. .|.+.......        .....++.+++.||++||++++..
T Consensus         4 v~VD~~~CigCg---~C~~~cP~~f~~~~-dg~~~~~~~~~~~~~~v~~~~~~~~~~aa~~CP~~AI~v~d~p   72 (81)
T d1iqza_           4 TIVDKETCIACG---ACGAAAPDIYDYDE-DGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADEP   72 (81)
T ss_dssp             EEECTTTCCCCS---HHHHHCTTTEEECT-TSCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESSC
T ss_pred             EEEeHHHCcCcC---hHhHhCchheeEcC-CCeEEEeecCCcCcccCCHHHHHHHHHHHHhCCcccEEEEeCC
Confidence            678999999998   89999999999864 45665543221        223568899999999999998754

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Desulfovibrio gigas [TaxId: 879]

Probab=97.76  E-value=3.4e-06  Score=55.62  Aligned_cols=57  Identities=21%  Similarity=0.399  Sum_probs=44.1

Q ss_pred             hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEEe
Q 024836          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYV  202 (262)
Q Consensus       141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~v  202 (262)
                      +||++ .|+|+|   .|+..+|..|.+...+ .+.......+.......+++.||++||...
T Consensus         2 v~v~e-~CigCg---~C~~~CP~~~~~~~~g-~~~~~~~~~~~~~~c~~c~~~CP~~AIs~s   58 (58)
T d1fxda_           2 IEVND-DCMACE---ACVEICPDVFEMNEEG-DKAVVINPDSDLDCVEEAIDSCPAEAIVRS   58 (58)
T ss_dssp             EEECT-TCCCCC---HHHHHCTTTEEECSSS-SSEEESCTTCCCHHHHHHHHHCTTCCEEEC
T ss_pred             eeECc-cCcChh---hHHHHcChhheEcCCC-CEEEEecCCCCcHHHHHHhhcCChhcEECC
Confidence            46664 699998   8999999999997664 444444444556678999999999999863

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Fe3S4-ferredoxin PF1909
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.41  E-value=1.4e-05  Score=53.59  Aligned_cols=61  Identities=21%  Similarity=0.353  Sum_probs=45.5

Q ss_pred             hhhhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCC-C--chhHHHHHhhcCCccceEEeC
Q 024836          139 LDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGH-G--QDYRVQLAVGQCPRSCIHYVT  203 (262)
Q Consensus       139 ~~iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~-~--~~~~vq~A~~~CP~~~I~~v~  203 (262)
                      +.+.+|...|+|+|   .|+..+|..|.+...+ .+....... +  .......++..||++||++.+
T Consensus         2 ~ki~vD~~~Ci~Cg---~C~~~CP~~~~~~~~~-~~~~~~~~~~~~~~c~~c~~c~~~CP~~AI~i~e   65 (66)
T d1sj1a_           2 WKVSVDQDTCIGDA---ICASLCPDVFEMNDEG-KAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE   65 (66)
T ss_dssp             EEEEECTTTCCCCC---HHHHHCTTTEEECTTS-CEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred             eEEEEeHHHCCCcC---hhhhhCCceEEEcccC-ceEeeccccCChHHHhhhCHhhccCCcccEEEEe
Confidence            45678999999998   8999999999986554 444443322 2  234578899999999999864

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin A
species: Thermotoga maritima [TaxId: 2336]

Probab=97.03  E-value=6.6e-05  Score=49.16  Aligned_cols=56  Identities=25%  Similarity=0.481  Sum_probs=44.7

Q ss_pred             hhhhccccccCCCCCCCCCCCCCceeeecCCCccccccCCCCchhHHHHHhhcCCccceEE
Q 024836          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHY  201 (262)
Q Consensus       141 iFv~~~~c~G~Gc~~~c~~~~p~~F~~~~~~G~ar~~~q~~~~~~~vq~A~~~CP~~~I~~  201 (262)
                      +.+|...|+|+|   .|+..+|..|.+.. .|.+....+. +.-.....+++.||++||+|
T Consensus         3 v~iD~~~C~~Cg---~C~~~cP~~~~~~~-~g~~~~~~~~-~~c~~c~~c~~~CP~~AI~i   58 (59)
T d1vjwa_           3 VRVDADACIGCG---VCENLCPDVFQLGD-DGKAKVLQPE-TDLPCAKDAADSCPTGAISV   58 (59)
T ss_dssp             CEECTTTCCCCC---HHHHHCTTTEEECT-TSSEEESCSB-CCCTHHHHHHHHCTTCCEEC
T ss_pred             EEEeHHHCCCCC---CChHhCchheEEcc-ceeeEEecCh-HHCcCcCcccCccCcccEEe
Confidence            568889999988   89999999999855 4666665443 34567889999999999986