Citrus Sinensis ID: 024840

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
MTFFVSQVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
cEEEEEEEEEEEccccEEEEEEEEEEcccccccccEEEEEEcccEEEEEEEEcccHHHHHHHHHHccccccccEEEEEEEccEEEEEEEcccEEEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHHHcccHHHHHccccEEEEEcccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHcccccEEEEEccccccccccc
cEEEEEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEEcccEEEEEEccccHHHHHHHHHHccHcccccEEEEEEccccEEEEEEEccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHHHcccHHHHHHcccEEEEEcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEccHHHHHHHHHcccHHEEEEcHHHHHHHEccc
MTFFVSQVVdydkegsvlrirgknilenehvkiGAFHTLEIELHRAFVLRKDLWDSlaldtlhqaadptaSADLAVVLMQEGLAHILLVGRsmtitrsrietsiprkhgpaiaGYESALNKFFENVLQAFLKHVDFNVVRCaviaspgftkdqFHRHLLLEAERRQLRPIIENKSRIILVHTssgykhslrevldapnvmnmiKDTKAAQEVQALKDFFNMltndptracygpkhvEVAHERMAVQTLLITDDLFRLVCSKS
mtffvsqvvdydkegsvlrirgknilenehVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRietsiprkhgpAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRqlrpiienksriilvhtssgykhslrEVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
MTFFVSQVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
**FFVSQVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVC***
MTFFVSQVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSR**********************FFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVC***
MTFFVSQVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
MTFFVSQVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MTFFVSQVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query262 2.2.26 [Sep-21-2011]
P48612395 Protein pelota OS=Drosoph yes no 0.946 0.627 0.520 5e-77
Q7ZWC4385 Protein pelota homolog OS yes no 0.954 0.649 0.492 2e-72
Q5U567383 Protein pelota homolog OS N/A no 0.954 0.652 0.508 2e-71
Q58DV0385 Protein pelota homolog OS yes no 0.954 0.649 0.492 2e-71
Q9BRX2385 Protein pelota homolog OS yes no 0.954 0.649 0.496 2e-71
Q5RCE3385 Protein pelota homolog OS yes no 0.954 0.649 0.496 2e-71
Q5XIP1385 Protein pelota homolog OS yes no 0.954 0.649 0.488 2e-71
Q5ZK01385 Protein pelota homolog OS yes no 0.954 0.649 0.484 4e-71
Q80X73385 Protein pelota homolog OS yes no 0.954 0.649 0.484 6e-71
P50444381 Uncharacterized protein R yes no 0.954 0.656 0.428 2e-57
>sp|P48612|PELO_DROME Protein pelota OS=Drosophila melanogaster GN=pelo PE=2 SV=2 Back     alignment and function desciption
 Score =  287 bits (735), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 129/248 (52%), Positives = 188/248 (75%)

Query: 9   VDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADP 68
           +D+D +  VLR++G+NI EN++VK+GA+HTL++EL+R F LRK  WD++AL+ +  A DP
Sbjct: 72  IDFDTQACVLRLKGRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDP 131

Query: 69  TASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQ 128
           T SAD+A V+MQEGLAH+ L+  SMT+ RS+IE SIPRK   ++  +E  L KF+E V+Q
Sbjct: 132 TQSADVAAVVMQEGLAHVCLITASMTLVRSKIEVSIPRKRKGSVQQHEKGLAKFYEQVMQ 191

Query: 129 AFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKH 188
           + L+HV+F+VV+C +IASPGF +DQF+ ++  +A +   + +++NKS+ +LVH SSG+KH
Sbjct: 192 SILRHVNFDVVKCVLIASPGFVRDQFYDYMFQQAVKMDYKLLLDNKSKFMLVHASSGFKH 251

Query: 189 SLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTL 248
           SLRE+L  P V+  + DTKAA EV+AL+ F+ ML  +P +A YG KHV  A E  A++TL
Sbjct: 252 SLREILQDPAVLAKMSDTKAAGEVKALEQFYMMLQCEPAKAFYGKKHVLQAAESQAIETL 311

Query: 249 LITDDLFR 256
           LI+D+LFR
Sbjct: 312 LISDNLFR 319
Required prior to the first meiotic division for spindle formation and nuclear envelope breakdown during spermatogenesis. It is also required for normal eye patterning and for mitotic divisions in the ovary. Required for ovarian germ line stem cell self-renewal. May play a role in regulating translation. May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q7ZWC4|PELO_DANRE Protein pelota homolog OS=Danio rerio GN=pelo PE=2 SV=1 Back     alignment and function description
>sp|Q5U567|PELO_XENLA Protein pelota homolog OS=Xenopus laevis GN=pelo PE=2 SV=1 Back     alignment and function description
>sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2 Back     alignment and function description
>sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=2 Back     alignment and function description
>sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=PELO PE=2 SV=1 Back     alignment and function description
>sp|Q5XIP1|PELO_RAT Protein pelota homolog OS=Rattus norvegicus GN=Pelo PE=2 SV=1 Back     alignment and function description
>sp|Q5ZK01|PELO_CHICK Protein pelota homolog OS=Gallus gallus GN=PELO PE=2 SV=1 Back     alignment and function description
>sp|Q80X73|PELO_MOUSE Protein pelota homolog OS=Mus musculus GN=Pelo PE=2 SV=3 Back     alignment and function description
>sp|P50444|YNU6_CAEEL Uncharacterized protein R74.6 OS=Caenorhabditis elegans GN=R74.6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
225431029 378 PREDICTED: protein pelota [Vitis vinifer 0.954 0.661 0.908 1e-132
449442249 379 PREDICTED: protein pelota-like [Cucumis 0.961 0.664 0.888 1e-132
255543102 378 pelota, putative [Ricinus communis] gi|2 0.954 0.661 0.876 1e-130
224082576 377 predicted protein [Populus trichocarpa] 0.954 0.663 0.88 1e-130
363807988 379 uncharacterized protein LOC100793935 [Gl 0.961 0.664 0.857 1e-129
356535240 379 PREDICTED: protein pelota-like [Glycine 0.961 0.664 0.853 1e-128
297799208 378 hypothetical protein ARALYDRAFT_492022 [ 0.946 0.656 0.862 1e-125
30687676 378 Eukaryotic release factor 1 (eRF1) famil 0.946 0.656 0.858 1e-124
116310865 378 OSIGBa0132E09-OSIGBa0108L24.21 [Oryza sa 0.965 0.669 0.778 1e-116
38345200 378 OSJNBa0015K02.10 [Oryza sativa Japonica 0.965 0.669 0.778 1e-116
>gi|225431029|ref|XP_002279875.1| PREDICTED: protein pelota [Vitis vinifera] gi|297735305|emb|CBI17667.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/250 (90%), Positives = 240/250 (96%)

Query: 7   QVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAA 66
           +V DYDK GSVLRIRGKNILENE+VKIG FHTLEIE HR FVLRK +WDSLALDTL+QA+
Sbjct: 70  EVADYDKVGSVLRIRGKNILENEYVKIGQFHTLEIEQHRPFVLRKVVWDSLALDTLNQAS 129

Query: 67  DPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENV 126
           DP ASADLAVVLMQEGLAH++L+GRS+TITRSRIE SIPRKHGPAIAGYE+ALNKFFENV
Sbjct: 130 DPAASADLAVVLMQEGLAHVILIGRSLTITRSRIEASIPRKHGPAIAGYEAALNKFFENV 189

Query: 127 LQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGY 186
           LQAFLK+VDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLR IIENKSRIILVHTSSGY
Sbjct: 190 LQAFLKYVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRSIIENKSRIILVHTSSGY 249

Query: 187 KHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQ 246
           KHSL+EVLDAPNVMNMIKDTKAAQEVQALKDFFNML+NDP RACYGPKHVEVAHERMAVQ
Sbjct: 250 KHSLKEVLDAPNVMNMIKDTKAAQEVQALKDFFNMLSNDPARACYGPKHVEVAHERMAVQ 309

Query: 247 TLLITDDLFR 256
           TLLITDDLFR
Sbjct: 310 TLLITDDLFR 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449442249|ref|XP_004138894.1| PREDICTED: protein pelota-like [Cucumis sativus] gi|449477765|ref|XP_004155116.1| PREDICTED: protein pelota-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255543102|ref|XP_002512614.1| pelota, putative [Ricinus communis] gi|223548575|gb|EEF50066.1| pelota, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224082576|ref|XP_002306749.1| predicted protein [Populus trichocarpa] gi|222856198|gb|EEE93745.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807988|ref|NP_001242204.1| uncharacterized protein LOC100793935 [Glycine max] gi|255640054|gb|ACU20318.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356535240|ref|XP_003536156.1| PREDICTED: protein pelota-like [Glycine max] Back     alignment and taxonomy information
>gi|297799208|ref|XP_002867488.1| hypothetical protein ARALYDRAFT_492022 [Arabidopsis lyrata subsp. lyrata] gi|297313324|gb|EFH43747.1| hypothetical protein ARALYDRAFT_492022 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30687676|ref|NP_194495.3| Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana] gi|3941543|gb|AAC82379.1| pelota [Arabidopsis thaliana] gi|4469016|emb|CAB38277.1| pelota (PEL1) [Arabidopsis thaliana] gi|7269619|emb|CAB81415.1| pelota (PEL1) [Arabidopsis thaliana] gi|18377690|gb|AAL66995.1| putative pelota (PEL1) protein [Arabidopsis thaliana] gi|20465995|gb|AAM20219.1| putative pelota protein (PEL1) [Arabidopsis thaliana] gi|332659974|gb|AEE85374.1| Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|116310865|emb|CAH67807.1| OSIGBa0132E09-OSIGBa0108L24.21 [Oryza sativa Indica Group] gi|125550079|gb|EAY95901.1| hypothetical protein OsI_17764 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|38345200|emb|CAE02893.2| OSJNBa0015K02.10 [Oryza sativa Japonica Group] gi|38346417|emb|CAE54582.1| OSJNBa0011F23.23 [Oryza sativa Japonica Group] gi|222629704|gb|EEE61836.1| hypothetical protein OsJ_16488 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
TAIR|locus:2137732378 PEL1 "AT4G27650" [Arabidopsis 0.946 0.656 0.858 7.6e-112
TAIR|locus:2085465395 AT3G58390 "AT3G58390" [Arabido 0.946 0.627 0.802 2.9e-103
FB|FBgn0011207395 pelo "pelota" [Drosophila mela 0.946 0.627 0.520 3e-69
ZFIN|ZDB-GENE-040426-1074385 pelo "pelota homolog (Drosophi 0.954 0.649 0.492 2.5e-65
UNIPROTKB|H9L2N7361 PELO "Protein pelota homolog" 0.954 0.692 0.484 5.2e-65
UNIPROTKB|H9L2N8384 PELO "Protein pelota homolog" 0.954 0.651 0.484 5.2e-65
UNIPROTKB|Q58DV0385 PELO "Protein pelota homolog" 0.954 0.649 0.492 5.2e-65
UNIPROTKB|Q9BRX2385 PELO "Protein pelota homolog" 0.954 0.649 0.496 5.2e-65
RGD|1359591385 Pelo "pelota homolog (Drosophi 0.954 0.649 0.488 6.7e-65
UNIPROTKB|Q5ZK01385 PELO "Protein pelota homolog" 0.954 0.649 0.484 1.1e-64
TAIR|locus:2137732 PEL1 "AT4G27650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 213/248 (85%), Positives = 234/248 (94%)

Query:     9 VDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADP 68
             VDYDK+GSVLRIRGKNILENEHVKIGAFHTLE+EL R FVLRK++WDS+ALDTL QA+DP
Sbjct:    72 VDYDKDGSVLRIRGKNILENEHVKIGAFHTLELELKRPFVLRKEMWDSMALDTLKQASDP 131

Query:    69 TASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQ 128
              ASADLAVVLMQEGLA I LVGRS+T +R+RIETSIPRKHGPAIAGYESAL KFFENVLQ
Sbjct:   132 AASADLAVVLMQEGLAQIFLVGRSVTSSRARIETSIPRKHGPAIAGYESALKKFFENVLQ 191

Query:   129 AFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKH 188
             AF+KHVDF+VVRCAV+ASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHT+SGY+H
Sbjct:   192 AFVKHVDFSVVRCAVVASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTNSGYRH 251

Query:   189 SLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTL 248
             SL EVL APNVMNMIKDTKAA+EV+AL DF NML+ +P RACYGPKHVEVA+ERMA+QTL
Sbjct:   252 SLGEVLHAPNVMNMIKDTKAAKEVKALNDFHNMLSTEPDRACYGPKHVEVANERMAIQTL 311

Query:   249 LITDDLFR 256
             LITD+LFR
Sbjct:   312 LITDELFR 319
GO:0003747 "translation release factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006415 "translational termination" evidence=ISS
GO:0007126 "meiosis" evidence=ISS
TAIR|locus:2085465 AT3G58390 "AT3G58390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0011207 pelo "pelota" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1074 pelo "pelota homolog (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|H9L2N7 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H9L2N8 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DV0 PELO "Protein pelota homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BRX2 PELO "Protein pelota homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1359591 Pelo "pelota homolog (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZK01 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P48612PELO_DROME3, ., 1, ., -, ., -0.52010.94650.6278yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025125001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (378 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00001176001
SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)
•   • • 0.836
GSVIVG00016616001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (107 aa)
    • • 0.693
GSVIVG00002292001
SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (797 aa)
      • 0.610
GSVIVG00004407001
SubName- Full=Chromosome undetermined scaffold_690, whole genome shotgun sequence; (249 aa)
  • •   0.475
GSVIVG00015193001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (249 aa)
  • •   0.467
GSVIVG00006153001
SubName- Full=Chromosome undetermined scaffold_165, whole genome shotgun sequence; (269 aa)
  • •   0.451
GSVIVG00010464001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (563 aa)
• ••    0.450
GSVIVG00024178001
RecName- Full=Proliferating cell nuclear antigen;; This protein is an auxiliary protein of DNA [...] (266 aa)
  •     0.414

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
COG1537352 COG1537, PelA, Predicted RNA-binding proteins [Gen 5e-45
pfam03464129 pfam03464, eRF1_2, eRF1 domain 2 1e-36
TIGR00111351 TIGR00111, pelota, mRNA surveillance protein pelot 5e-32
pfam03463133 pfam03463, eRF1_1, eRF1 domain 1 1e-15
pfam03465100 pfam03465, eRF1_3, eRF1 domain 3 3e-14
TIGR03676357 TIGR03676, aRF1/eRF1, peptide chain release factor 9e-12
PRK04011411 PRK04011, PRK04011, peptide chain release factor 1 5e-08
COG1503411 COG1503, eRF1, Peptide chain release factor 1 (eRF 1e-04
>gnl|CDD|224454 COG1537, PelA, Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information 
 Score =  154 bits (391), Expect = 5e-45
 Identities = 72/248 (29%), Positives = 133/248 (53%), Gaps = 16/248 (6%)

Query: 9   VDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADP 68
           +++DK  + LRI+G  +   E V  G++HT+ + +     + K+ W+   L+ L +A + 
Sbjct: 69  IEFDKFANRLRIKGPIVEGPEEVVKGSYHTINVTIGTEIEIEKEEWNKDQLERLKEAVEA 128

Query: 69  TASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQ 128
           +   ++A+V++ EG A I +V     I   +I + IP K      G   A  KFF+ + +
Sbjct: 129 SKRPEVAIVVVDEGEAAIAIVRDYGIIILGKIRSGIPGKR----EGDIRAERKFFDEIAK 184

Query: 129 AFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKH 188
           A  ++ + +++   ++A PGF K+ F+  L      R+  P     + I++  TS+G + 
Sbjct: 185 ALKEYANLDII---IVAGPGFAKEDFYDFL------RERYP---ELANIVIEDTSTGGRA 232

Query: 189 SLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTL 248
            + EVL    V  ++ +T+ A+E++ +++F   L  D  +  YG + VE A E  AV+TL
Sbjct: 233 GINEVLKRGAVDKILSETRIAEEIELVEEFLERLAKDDDKVAYGLEEVEKAAEYGAVETL 292

Query: 249 LITDDLFR 256
           L+TD+L R
Sbjct: 293 LVTDELLR 300

Length = 352
>gnl|CDD|217575 pfam03464, eRF1_2, eRF1 domain 2 Back     alignment and domain information
>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota Back     alignment and domain information
>gnl|CDD|217574 pfam03463, eRF1_1, eRF1 domain 1 Back     alignment and domain information
>gnl|CDD|146221 pfam03465, eRF1_3, eRF1 domain 3 Back     alignment and domain information
>gnl|CDD|234307 TIGR03676, aRF1/eRF1, peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>gnl|CDD|235198 PRK04011, PRK04011, peptide chain release factor 1; Provisional Back     alignment and domain information
>gnl|CDD|224420 COG1503, eRF1, Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 262
KOG2869379 consensus Meiotic cell division protein Pelota/DOM 100.0
TIGR00111351 pelota probable translation factor pelota. This mo 100.0
COG1537352 PelA Predicted RNA-binding proteins [General funct 100.0
TIGR00108409 eRF peptide chain release factor eRF/aRF, subunit 100.0
TIGR03676403 aRF1/eRF1 peptide chain release factor 1, archaeal 100.0
PRK04011411 peptide chain release factor 1; Provisional 100.0
COG1503411 eRF1 Peptide chain release factor 1 (eRF1) [Transl 100.0
PF03464133 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This do 99.97
KOG0688 431 consensus Peptide chain release factor 1 (eRF1) [T 99.94
PF03463132 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This do 99.78
PF03465113 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This do 99.48
PF10116138 Host_attach: Protein required for attachment to ho 96.03
>KOG2869 consensus Meiotic cell division protein Pelota/DOM34 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-69  Score=477.17  Aligned_cols=261  Identities=56%  Similarity=0.876  Sum_probs=256.3

Q ss_pred             CeeEEEEEEeecCCCCeEEEEEEEEecCccccCCcEEEEEEccCCceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEe
Q 024840            1 MTFFVSQVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQ   80 (262)
Q Consensus         1 ~~~i~Ve~vef~~~~~~Lri~G~i~~~~e~v~~G~~HT~~i~~~~~i~i~K~~wd~~~le~L~~a~~~~~~~~~~~v~id   80 (262)
                      +.+|+||+++||+.++.||++|+++++|+||++|+|||++++++++|++.|.+||++.+++|++|+++...+++++|+++
T Consensus        64 ~L~i~VesidfD~~~~~L~~KGrti~eNe~Vk~GaYHTidlel~r~FtL~K~ewds~al~~l~~A~dp~~~ad~aaVvlq  143 (379)
T KOG2869|consen   64 KLKIKVESIDFDTKACVLRLKGRTIEENEYVKMGAYHTIDLELNRPFTLRKEEWDSMALKLLKEACDPAPSADVAAVVLQ  143 (379)
T ss_pred             EEEEEEEEeeccccccEEEEeeeeeeecccccccceeEEEeccCCceEEEhhhchHHHHHHHHHhhCcccccceeeeehh
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEecceEEEEEEEEeeCCCCCCCCcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHH
Q 024840           81 EGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLL  160 (262)
Q Consensus        81 ~g~a~i~~l~~~~~~~~~~i~~~ip~K~~~g~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~~~l~~  160 (262)
                      ||.|+||+++.+++...++++.++|+||+++.|++++.+++||+.|.+++.++++|+.++|+|||||||+++.|++|+.+
T Consensus       144 EGla~IcLvt~s~tilr~kIe~siPrKr~~~~s~~e~~l~kfye~V~qA~~k~v~fd~vk~~vvASpgF~~~~~~d~~~q  223 (379)
T KOG2869|consen  144 EGLAHICLVTKSSTILRAKIEVSIPRKRKGDVSQHEEGLEKFYENVVQAILKHVNFDVVKCVVVASPGFVKDQFMDYLFQ  223 (379)
T ss_pred             cCceeEEEechhHHHHHHhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHhcCcceEEEEEEcCCchhHHHHHHHHHH
Confidence            99999999999999999999999999988888899999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccchhhhccCcEEEEEcCCCcchhHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHhhcCCCcEEECHHHHHHHH
Q 024840          161 EAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAH  240 (262)
Q Consensus       161 ~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~v~YG~~eV~~Al  240 (262)
                      .+.+..++.+..+++||..+|+|+|+.++|+|+|.+|.+.+.|+|++++.|.++||+|+.+|+++|++||||+++|.+|.
T Consensus       224 ~A~~~~~k~il~nk~kf~~~h~ssg~~hslnevL~dp~v~~~l~dtK~~~EvkalddF~~~l~~~~drA~yG~khV~~A~  303 (379)
T KOG2869|consen  224 QAVKLDLKLILENKSKFPLVHASSGYKHSLNEVLKDPAVASKLQDTKAAKEVKALDDFYVMLSKDPDRACYGPKHVEKAN  303 (379)
T ss_pred             HHHHhchhhhhhcccceeEEecCCchHHHHHHHhcChHHHHHhhchhhHHHHHHHHHHHHHhccCccccccCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCccEEEEecCCcccCCCC
Q 024840          241 ERMAVQTLLITDDLFRLVCSK  261 (262)
Q Consensus       241 e~GAVe~LLVsd~l~r~~d~~  261 (262)
                      |+|||++|||||++||+.|++
T Consensus       304 e~~AI~tLLitD~lfr~~DV~  324 (379)
T KOG2869|consen  304 EYGAIETLLITDELFRSQDVA  324 (379)
T ss_pred             hhcchhheehhhhhcccccHH
Confidence            999999999999999999975

>TIGR00111 pelota probable translation factor pelota Back     alignment and domain information
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1 Back     alignment and domain information
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>PRK04011 peptide chain release factor 1; Provisional Back     alignment and domain information
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
3mca_B390 Structure Of The Dom34-Hbs1 Complex And Implication 8e-53
2vgm_A386 Structure Of Yeast Dom34 : A Protein Related To Tra 1e-29
2vgn_A386 Structure Of Yeast Dom34 : A Protein Related To Tra 6e-29
3j15_A357 Model Of Ribosome-Bound Archaeal Pelota And Abce1 L 6e-14
1x52_A124 Solution Structures Of The C-Terminal Domain Of The 2e-13
3obw_A364 Crystal Structure Of Two Archaeal Pelotas Reveal In 5e-08
2qi2_A347 Crystal Structure Of The Thermoplasma Acidophilum P 6e-06
3oby_A352 Crystal Structure Of Archaeoglobus Fulgidus Pelota 1e-04
>pdb|3MCA|B Chain B, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 390 Back     alignment and structure 
Iteration: 1

 Score =  203 bits (516), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 94/248 (37%), Positives = 159/248 (64%)
Query: 9   VDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADP 68
           +D+D + + L I+G+    +  VK+G++HTL++ELHR F L K+ WD+ ALD +  A +P
Sbjct: 72  MDFDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNP 131
Query: 69  TASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQ 128
           + +A++  V++ EGLA+I L+   MTI R RI+  IPRK     + Y+  L+KF+++V Q
Sbjct: 132 SRNAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQ 191
Query: 129 AFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKH 188
           +     DF+ ++  ++ASPGF     + ++   A +  L+ I+++K++ +++H+S+G+ H
Sbjct: 192 SINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIH 251
Query: 189 SLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTL 248
           SL E+L  P V + + DTK  QE++ L  F++++  D  +A YGP HV  A E  A+  L
Sbjct: 252 SLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGEL 311
Query: 249 LITDDLFR 256
           LI+D LFR
Sbjct: 312 LISDSLFR 319
>pdb|2VGM|A Chain A, Structure Of Yeast Dom34 : A Protein Related To Translation Termination Factor Erf1 And Involved In No-Go Decay. Length = 386 Back     alignment and structure
>pdb|2VGN|A Chain A, Structure Of Yeast Dom34 : A Protein Related To Translation Termination Factor Erf1 And Involved In No-go Decay. Length = 386 Back     alignment and structure
>pdb|3J15|A Chain A, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 357 Back     alignment and structure
>pdb|1X52|A Chain A, Solution Structures Of The C-Terminal Domain Of The Human Pelota Homolog (Cgi-17) Length = 124 Back     alignment and structure
>pdb|3OBW|A Chain A, Crystal Structure Of Two Archaeal Pelotas Reveal Inter-Domain Structural Plasticity Length = 364 Back     alignment and structure
>pdb|2QI2|A Chain A, Crystal Structure Of The Thermoplasma Acidophilum Pelota Protein Length = 347 Back     alignment and structure
>pdb|3OBY|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Pelota Reveals Inter- Domain Structural Plasticity Length = 352 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 2e-73
2vgn_A386 DOM34; translation termination factor, protein bio 5e-72
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 3e-54
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 8e-54
3agj_B358 Protein pelota homolog; GTP binding, translation-h 2e-50
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 6e-49
2qi2_A347 Pelota, cell division protein pelota related prote 2e-43
3agk_A373 Peptide chain release factor subunit 1; translatio 2e-31
3e20_C 441 Eukaryotic peptide chain release factor subunit 1; 2e-24
1dt9_A 437 ERF1, protein (eukaryotic peptide chain release fa 2e-20
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 1e-17
3ir9_A166 Peptide chain release factor subunit 1; structural 9e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390 Back     alignment and structure
 Score =  228 bits (581), Expect = 2e-73
 Identities = 94/248 (37%), Positives = 159/248 (64%)

Query: 9   VDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADP 68
           +D+D + + L I+G+    +  VK+G++HTL++ELHR F L K+ WD+ ALD +  A +P
Sbjct: 72  MDFDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNP 131

Query: 69  TASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQ 128
           + +A++  V++ EGLA+I L+   MTI R RI+  IPRK     + Y+  L+KF+++V Q
Sbjct: 132 SRNAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQ 191

Query: 129 AFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKH 188
           +     DF+ ++  ++ASPGF     + ++   A +  L+ I+++K++ +++H+S+G+ H
Sbjct: 192 SINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIH 251

Query: 189 SLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTL 248
           SL E+L  P V + + DTK  QE++ L  F++++  D  +A YGP HV  A E  A+  L
Sbjct: 252 SLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGEL 311

Query: 249 LITDDLFR 256
           LI+D LFR
Sbjct: 312 LISDSLFR 319
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386 Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357 Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364 Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358 Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Length = 352 Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347 Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Length = 373 Back     alignment and structure
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Length = 441 Back     alignment and structure
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Length = 437 Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Length = 124 Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Length = 166 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 100.0
2vgn_A386 DOM34; translation termination factor, protein bio 100.0
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 100.0
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 100.0
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 100.0
3agj_B358 Protein pelota homolog; GTP binding, translation-h 100.0
2qi2_A347 Pelota, cell division protein pelota related prote 100.0
3e20_C 441 Eukaryotic peptide chain release factor subunit 1; 100.0
1dt9_A 437 ERF1, protein (eukaryotic peptide chain release fa 100.0
3agk_A373 Peptide chain release factor subunit 1; translatio 100.0
3ir9_A166 Peptide chain release factor subunit 1; structural 99.79
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 99.7
1xbi_A120 50S ribosomal protein L7AE; alpha-beta-alpha sandw 81.94
3j21_Z99 50S ribosomal protein L30E; archaea, archaeal, KIN 80.55
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=1.1e-69  Score=505.70  Aligned_cols=260  Identities=36%  Similarity=0.655  Sum_probs=242.5

Q ss_pred             CeeEEEEEEeecCCCCeEEEEEEEEecCccccCCcEEEEEEccCCceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEe
Q 024840            1 MTFFVSQVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQ   80 (262)
Q Consensus         1 ~~~i~Ve~vef~~~~~~Lri~G~i~~~~e~v~~G~~HT~~i~~~~~i~i~K~~wd~~~le~L~~a~~~~~~~~~~~v~id   80 (262)
                      +++|+||+++|||++++|||+|+|+.+|+++++|+|||++|+||+||+++|++||+|++++|++|++++.++++++|+||
T Consensus        64 ~L~i~Ve~ief~~~~~~Lri~G~i~~~~~~vk~G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv~d  143 (390)
T 3mca_B           64 KLRILVENMDFDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLD  143 (390)
T ss_dssp             ---EECCCEEECTTSSCEEEC-CBCSCCC---CCSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEEEE
T ss_pred             EEEEEEEEEEecCCCCEEEEEEEEecCCccccccceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEEEE
Confidence            36899999999999999999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             CCeEEEEEEecceEEEEEEEEeeCCCCCCCCcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHH
Q 024840           81 EGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLL  160 (262)
Q Consensus        81 ~g~a~i~~l~~~~~~~~~~i~~~ip~K~~~g~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPgf~k~~f~~~l~~  160 (262)
                      +|+|+||++++++++++++++.++|+||++|++++++++++||++|++++.+++++.++++||||||||+|++|++||.+
T Consensus       144 eg~A~i~ll~~~~~~~~~~i~~~iPkK~~~gg~~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~  223 (390)
T 3mca_B          144 EGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFS  223 (390)
T ss_dssp             TTEEEEEEECSSCEEEEEEEECCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHH
T ss_pred             CCcEEEEEEcCCEEEEEEEEEEeCCCcCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHH
Confidence            99999999999999999999999999998855589999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccchhhhccCcEEEEEcCCCcchhHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHhhcCCCcEEECHHHHHHHH
Q 024840          161 EAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAH  240 (262)
Q Consensus       161 ~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~v~YG~~eV~~Al  240 (262)
                      ++.+..++.++.++++|+++++|+||++|++|+|++|+++++|+++++++|.++|++|++++++|++++|||+++|.+|+
T Consensus       224 ~~~~~~~k~l~~~~~k~~vv~~s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Al  303 (390)
T 3mca_B          224 MAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAF  303 (390)
T ss_dssp             HHHHTTCHHHHHHGGGEEEEECSCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHH
T ss_pred             HHhhccchhhhhhcCeEEEEEcCCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHH
Confidence            99888888887788899899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCccEEEEecCCcccCCC
Q 024840          241 ERMAVQTLLITDDLFRLVCS  260 (262)
Q Consensus       241 e~GAVe~LLVsd~l~r~~d~  260 (262)
                      ++|||++|||+|+++|++|+
T Consensus       304 e~GAVetLLI~d~l~r~~d~  323 (390)
T 3mca_B          304 ELGAIGELLISDSLFRSSDI  323 (390)
T ss_dssp             HTTCBSSCEEEETTCCCSCH
T ss_pred             HcCCCeEEEEecccccCCCh
Confidence            99999999999999998764
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Back     alignment and structure
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Back     alignment and structure
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Back     alignment and structure
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A Back     alignment and structure
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 262
d2vgna2142 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisi 3e-57
d2qi2a2117 c.55.4.2 (A:127-243) Cell division protein pelota 1e-18
d1x52a1111 d.79.3.2 (A:8-118) Cell division protein pelota {H 4e-17
d2vgna1135 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae 6e-17
d2qi2a1126 b.38.4.1 (A:1-126) Cell division protein pelota {T 3e-16
d2vgna3104 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisi 2e-14
d1dt9a2146 d.79.3.2 (A:277-422) C-terminal domain of eukaryot 1e-13
d2qi2a395 d.79.3.2 (A:244-338) Cell division protein pelota 2e-12
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 142 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  177 bits (450), Expect = 3e-57
 Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 1/139 (0%)

Query: 70  ASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPA-IAGYESALNKFFENVLQ 128
             +D A V++QEG+AH+ LV  S TI + +IE S+P+K     +  ++    KF++ +  
Sbjct: 3   YKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYS 62

Query: 129 AFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKH 188
           A  K ++F+ ++  ++ SPGF        +   AE    + I++NK    + H S+GY  
Sbjct: 63  AMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKKILDNKGMFFIAHCSTGYLQ 122

Query: 189 SLREVLDAPNVMNMIKDTK 207
            + EVL  P   + ++DTK
Sbjct: 123 GINEVLKNPLYASKLQDTK 141
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 117 Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 135 Back     information, alignment and structure
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 126 Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 104 Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
d2vgna2142 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 100.0
d2qi2a2117 Cell division protein pelota {Thermoplasma acidoph 99.93
d1dt9a1134 Middle domain of eukaryotic peptide chain release 99.88
d2vgna1135 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.83
d2qi2a1126 Cell division protein pelota {Thermoplasma acidoph 99.78
d1x52a1111 Cell division protein pelota {Human (Homo sapiens) 99.7
d2vgna3104 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.59
d2qi2a395 Cell division protein pelota {Thermoplasma acidoph 99.51
d1dt9a2146 C-terminal domain of eukaryotic peptide chain rele 99.48
d1dt9a3138 N-terminal domain of eukaryotic peptide chain rele 97.25
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=1.8e-37  Score=249.05  Aligned_cols=139  Identities=31%  Similarity=0.562  Sum_probs=126.8

Q ss_pred             CCCcEEEEEEeCCeEEEEEEecceEEEEEEEEeeCCCCCCC-CcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCc
Q 024840           70 ASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG  148 (262)
Q Consensus        70 ~~~~~~~v~id~g~a~i~~l~~~~~~~~~~i~~~ip~K~~~-g~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPg  148 (262)
                      .++++++|+|++|+|+||+|+++++.+++++++++|+||+. |+|++++++++||++|++++.++++++++++|||||||
T Consensus         3 ~~a~vaavvm~eG~A~i~li~~~~t~~~~~Ie~~iP~K~~~~~~s~~~k~~~~Ff~~v~~~l~~~~~~~~~k~iIiaGPG   82 (142)
T d2vgna2           3 YKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPG   82 (142)
T ss_dssp             TTTCEEEEEEETTEEEEEEECSSCEEEEEEEEC---------CCSSCCHHHHHHHHHHHHHHHHHCCTTTCSEEEEEEST
T ss_pred             ccceEEEEEEeCCcEEEEEEcCCEEEEEEEEEEeCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHhCcccccEEEEeCCH
Confidence            36799999999999999999999999999999999999987 78899999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhcccchhhhccCcEEEEEcCCCcchhHHHHhcCchhHHhhhhhhH
Q 024840          149 FTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKA  208 (262)
Q Consensus       149 f~k~~f~~~l~~~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~  208 (262)
                      |+|++|++|+.+++.+...+.+++++++|+++++|+||++||+|+|++|+++++|+|+|+
T Consensus        83 f~K~~F~~yl~~~~~~~~~k~i~~~k~k~v~v~tSsg~~~gL~EvL~~~~v~~~l~dtK~  142 (142)
T d2vgna2          83 FYAKILMDKIFQYAEEEHNKKILDNKGMFFIAHCSTGYLQGINEVLKNPLYASKLQDTKY  142 (142)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHTTGGGEEEEECSCSSTHHHHHHHHCGGGHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHhccCeEEEEEcCCCcHHHHHHHHcCHHHHHHHhhcCC
Confidence            999999999999999999999999999999999999999999999999999999999985
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure