Citrus Sinensis ID: 024879

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEEccccccccccEEEEEEEccccccccccccccEEEEEEccccccHHHHHcEEEEEEEccccccEEEEEEEcccccHHHHHcccccccEEEEEEEEEEEccccEEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccccccEEEEccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEcccccccccEEEEcccccccHEEcccccHccEEEcccEEEEcccccEEcccccccEEEEEEHHHccccHHHHHEEEEEEEEccccccEEcccccccccHHHHHHHHHHHHHHHHHEEEEEccccEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHccccccccEEEEEEEEEccccccHHHHHHHHcccccccccEEccccccccccccccEccc
Coil and Loop (DISEMBL)
mavgknkriskgkkggkkkaadpfakkdwydikapscfrvrnvgkTLVTRTQGTKIASEGLKHRVFEvslgdlhneeEHAYRKIRLRaedvqgknvltnfwgmdftTDKLRSLVRKWHTLIEAYVDvkttdnytLRMFCIGftkrlpnqvkRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKatlsiyplqnvFIRKVKilkapkfdlgklmevhgdysedvgvkmerpadepipeapteviga
Flexible Loop (DISEMBL)
mavgknkriskgkkggkkkaadpfakkdwydikapscfrvrnvgktlvtrtqgtkiaseglkhrvfevslgdlhneEEHAYRKirlraedvqgknvltnfwgmdftTDKLRSLVRKWHTLIEayvdvkttdnyTLRMFCIGFtkrlpnqvkrTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREiekatlsiyplqNVFIRKVKILKAPKFDLGKLMEVHGDYSEdvgvkmerpadepipeapteviga
Low Complexity Region (SEG)
MAVgknkriskgkkggkkkaadpfakkDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA
Disordered region (IsUnstruct)
**************************KDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY**************************
Disordered Region (DISOPRED)
**************************KDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGK**********************************
Disordered Region (DISEMBL)
*********************DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA
Disordered Region (DISPRO)
******K*******GGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
A5B4K1	261	40S ribosomal protein S3a	yes	no	1.0	1.0	0.858	1e-125
Q8GTE3	261	40S ribosomal protein S3a	N/A	no	1.0	1.0	0.846	1e-124
P33444	261	40S ribosomal protein S3a	N/A	no	0.996	0.996	0.847	1e-123
Q285L8	261	40S ribosomal protein S3a	N/A	no	1.0	1.0	0.835	1e-121
Q42262	262	40S ribosomal protein S3a	yes	no	1.0	0.996	0.832	1e-121
Q9MBB3	261	40S ribosomal protein S3a	N/A	no	1.0	1.0	0.835	1e-120
Q9CAV0	262	40S ribosomal protein S3a	no	no	1.0	0.996	0.824	1e-119
P49198	260	40S ribosomal protein S3a	N/A	no	0.938	0.942	0.869	1e-119
P49397	262	40S ribosomal protein S3a	yes	no	0.954	0.950	0.84	1e-117
P49396	262	40S ribosomal protein S3a	N/A	no	0.996	0.992	0.821	1e-117

>sp|A5B4K1|RS3A1_VITVI 40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1

 Score =  446 bits (1148), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/261 (85%), Positives = 238/261 (91%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS F VRNVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFE+SL DL  +E+ AYRKIRLRAEDVQG+NVLTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEISLADLQADEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLR+FCI FTK+  NQ K+TCYAQ+SQIRQIRRKMREIM   A SCD
Sbjct: 121 IEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK LV+KFI E IGREIEKAT SIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKMERPADEPIPEAPTEVIGA 261
            K+ERPADEP+ E  TEVIGA
Sbjct: 241 TKLERPADEPVAEGVTEVIGA 261

Vitis vinifera (taxid: 29760)

>sp|Q8GTE3|RS3A_CICAR 40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1

 Score =  444 bits (1143), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/261 (84%), Positives = 241/261 (92%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPF+KKDWYDIKAPS F+V+NVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFE+SL DL  +E++A+RKIRLRAEDVQGKNVLTNF+GMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR  NQVKRTCYAQ+SQIRQIRRKMREIM+ QA SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK LV KFI E+IG+EIEKAT SIYPLQNVFIRKVKILK+PKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKMERPADEPIPEAPTEVIGA 261
            K+E PADE + E   E++GA
Sbjct: 241 TKVESPADETVVEGTPEIVGA 261

Cicer arietinum (taxid: 3827)

>sp|P33444|RS3A_CATRO 40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4

 Score =  441 bits (1134), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/262 (84%), Positives = 242/262 (92%), Gaps = 2/262 (0%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS F VRNVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           L+HRVFE+SL DL  +E+H++RKIRLRAED+QGKNVLTNFWGMDFTTDKLRSLVRKW +L
Sbjct: 61  LEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTD+YTLRMFCIGFTK+  NQ KRTCYAQ+SQIRQIRRKMREIM+ QA SCD
Sbjct: 121 IEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DV 239
           LK LV+KFI E IGREIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+E D+
Sbjct: 181 LKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDDI 240

Query: 240 GVKMERPADEPIPEAPTEVIGA 261
           G K++RPA+E + E PTEVIGA
Sbjct: 241 GTKLDRPAEEAVAE-PTEVIGA 261

Catharanthus roseus (taxid: 4058)

>sp|Q285L8|RS3A_TOBAC 40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1

 Score =  435 bits (1119), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/261 (83%), Positives = 238/261 (91%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADP+AKKDWYDIKAPS F ++NVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPYAKKDWYDIKAPSVFDIKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +E+ ++RKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLV+KW TL
Sbjct: 61  LKHRVFEVSLADLQKDEDQSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTD+YTLRMFCI FTK+ PNQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCD
Sbjct: 121 IEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK LV KFI E IGREIEKAT SI+PLQNV+IRKVKILKAPKFD+GKLMEVHGDYSEDVG
Sbjct: 181 LKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGDYSEDVG 240

Query: 241 VKMERPADEPIPEAPTEVIGA 261
           VK++RPADE + EA  E+ GA
Sbjct: 241 VKLDRPADETVAEAEPEIPGA 261

Nicotiana tabacum (taxid: 4097)

>sp|Q42262|RS3A2_ARATH 40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/262 (83%), Positives = 237/262 (90%), Gaps = 1/262 (0%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKG+KGGKKKA DPF+KKDWYD+KAP  F  RNVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL N+E++AYRKIRLRAEDVQG+NVLT FWGMDFTTDKLRSLV+KW TL
Sbjct: 61  LKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTD YTLRMFCI FTKR  NQVKRTCYAQ+SQIRQIRRKM EIM+ +A+SCD
Sbjct: 121 IEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDV 239
           LK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+ EDV
Sbjct: 181 LKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDV 240

Query: 240 GVKMERPADEPIPEAPTEVIGA 261
           GVK++RPADE + E PTE+IGA
Sbjct: 241 GVKVDRPADETMVEEPTEIIGA 262

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MBB3|RS3A_DAUCA 40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1

 Score =  430 bits (1105), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/261 (83%), Positives = 236/261 (90%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKA DPFAKKDWYDIKAP+ F+ +NVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEV L DL  +E+ AYRKIRLRAEDVQGKNVLTNF+GMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTD+YTLRMFCIGFTK+  NQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCD
Sbjct: 121 IEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK LV KFI E IGREIEKAT SI+PLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVG
Sbjct: 181 LKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVG 240

Query: 241 VKMERPADEPIPEAPTEVIGA 261
           VK+ERP +E + E  TEV+GA
Sbjct: 241 VKLERPIEETMVEGETEVVGA 261

Daucus carota (taxid: 4039)

>sp|Q9CAV0|RS3A1_ARATH 40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3

 Score =  428 bits (1101), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/262 (82%), Positives = 237/262 (90%), Gaps = 1/262 (0%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKG+KGGKKKA DPF+KKDWYD+KAPS F  RNVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +E++AYRKIRLRAEDVQG+NVL  FWGMDFTTDKLRSLV+KW TL
Sbjct: 61  LKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTD+YTLR+FCI FTKR  NQVKRTCYAQ+SQIRQIRRKMR+IM+ +A+SCD
Sbjct: 121 IEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDV 239
           LK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLM+VHGDYS EDV
Sbjct: 181 LKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDV 240

Query: 240 GVKMERPADEPIPEAPTEVIGA 261
           GVK++RPADE   E PTE+IGA
Sbjct: 241 GVKVDRPADEMAVEEPTEIIGA 262

Arabidopsis thaliana (taxid: 3702)

>sp|P49198|RS3A_HELAN 40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2

 Score =  428 bits (1101), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/245 (86%), Positives = 230/245 (93%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPF+KKDWYDIKAPS F  RNVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSLFITRNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL N+E+H+YRKIRLRAEDVQGKNVLTNFWGMD TTDKLRSLV+KW +L
Sbjct: 61  LKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDN+TLRMFCIGFTK+  NQVKRTCYAQ+SQI+QIRRKMREIM+ QA +CD
Sbjct: 121 IEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK LV+KFI E IGREIEKAT SIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVG
Sbjct: 181 LKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVG 240

Query: 241 VKMER 245
           VK++R
Sbjct: 241 VKLDR 245

Helianthus annuus (taxid: 4232)

>sp|P49397|RS3A_ORYSJ 40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2

 Score =  421 bits (1082), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/250 (84%), Positives = 228/250 (91%), Gaps = 1/250 (0%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKG KKK  DPFAKKDWYDIKAPS F VRN+GKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL N+E+ AYRKIRLRAEDVQGKNVLTNFWGM FTTDKLRSLV+KW TL
Sbjct: 61  LKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTD Y LR+FCIGFTKR PNQVKRTCYAQASQIRQIRRKM EIM  QA+SCD
Sbjct: 121 IEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDV 239
           LK LV KFI E+IG+EIEKAT SI+PLQNVF+RKVKILKAPKFDLGKLMEVHGDY+ ED+
Sbjct: 181 LKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDI 240

Query: 240 GVKMERPADE 249
           G K++RPA++
Sbjct: 241 GTKLDRPAED 250

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P49396|RS3A_BRARA 40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2

 Score =  419 bits (1077), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/263 (82%), Positives = 236/263 (89%), Gaps = 3/263 (1%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKG+KGGKKK  DPFAKKDWYDIKAPS F  RNVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGRKGGKKKIVDPFAKKDWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL+ +E+ AYRKIRLRAEDVQG+NVLT FWGMDFTTDKLRSLV+KW TL
Sbjct: 61  LKHRVFEVSLADLNKDEDQAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMI-AQAASC 179
           IE++VDVKTTDNYTLR+FCI FTKR  NQVKRTCYAQ+SQIRQIR KMREIMI  +A+SC
Sbjct: 121 IESHVDVKTTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSC 180

Query: 180 DLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ED 238
           DLK LV KFI E IG++IEKAT  IYPLQNVFIRKVKILKAPKFDL KLMEVHGDY+ ED
Sbjct: 181 DLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAED 240

Query: 239 VGVKMERPADEPIPEAPTEVIGA 261
           VGVK++RPADE + E PTE+IGA
Sbjct: 241 VGVKVDRPADEVVEE-PTEIIGA 262

Brassica rapa (taxid: 51350)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
255552081	260	40S ribosomal protein S3a, putative [Ric	0.996	1.0	0.880	1e-128
449432676	261	PREDICTED: 40S ribosomal protein S3a-lik	1.0	1.0	0.885	1e-127
118482920	260	unknown [Populus trichocarpa] gi|1184839	0.988	0.992	0.883	1e-126
359806025	261	uncharacterized protein LOC100813273 [Gl	1.0	1.0	0.869	1e-126
217074782	261	unknown [Medicago truncatula] gi|3884927	1.0	1.0	0.865	1e-126
359806537	261	uncharacterized protein LOC100805519 [Gl	1.0	1.0	0.865	1e-126
356535985	261	PREDICTED: 40S ribosomal protein S3a-lik	1.0	1.0	0.865	1e-125
406870061	261	40S ribosomal protein S3a-like protein [	1.0	1.0	0.869	1e-125
358248303	261	uncharacterized protein LOC100808747 [Gl	1.0	1.0	0.858	1e-125
449455292	260	PREDICTED: 40S ribosomal protein S3a-lik	0.996	1.0	0.873	1e-125

>gi|255552081|ref|XP_002517085.1| 40S ribosomal protein S3a, putative [Ricinus communis] gi|223543720|gb|EEF45248.1| 40S ribosomal protein S3a, putative [Ricinus communis]

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/260 (88%), Positives = 243/260 (93%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPF+KKDWYDIKAPS F+V+NVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFE+SL DL  +E+HAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEISLADLQGDEDHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR PNQ+KRTCYAQ+SQI QIRRKMREIM AQAASCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQIKRTCYAQSSQIGQIRRKMREIMTAQAASCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK LV KFI E IG+EIEKAT SIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPETIGKEIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKMERPADEPIPEAPTEVIG 260
           VK+ERPADEP+ EAP E + 
Sbjct: 241 VKLERPADEPMAEAPAETVA 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432676|ref|XP_004134125.1| PREDICTED: 40S ribosomal protein S3a-like [Cucumis sativus] gi|449518719|ref|XP_004166384.1| PREDICTED: 40S ribosomal protein S3a-like [Cucumis sativus]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/261 (88%), Positives = 243/261 (93%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKA DPFAKKDWYDIKAPS F V+NVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFE+SL DL  +EEHAYRKIRLRAEDVQG+NVLTNFWGM+FTTDKLRSLVRKWHTL
Sbjct: 61  LKHRVFEISLADLQEDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR PNQVKRTCYAQ+SQIRQIRRKMREIM+ QA+SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK LV KFI E IG+EIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKMERPADEPIPEAPTEVIGA 261
           VK+ERPADE   E  TEV+GA
Sbjct: 241 VKVERPADETAVEGATEVVGA 261

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482920|gb|ABK93373.1| unknown [Populus trichocarpa] gi|118483951|gb|ABK93864.1| unknown [Populus trichocarpa]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/258 (88%), Positives = 239/258 (92%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPF+KKDWYDIKAPS F V+NVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFSVKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFE+SL DL  +E+HAYRKIRLRAEDVQGKNVLTNFWGM+FT DKLRSLVRKW TL
Sbjct: 61  LKHRVFEISLADLQGDEDHAYRKIRLRAEDVQGKNVLTNFWGMNFTNDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR PNQ+KRT YAQ+SQIRQIRRKMREIM AQA SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQIKRTTYAQSSQIRQIRRKMREIMTAQATSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK LV KFI E IG+EIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKMERPADEPIPEAPTEV 258
           VK+ERPADEPI EAP E 
Sbjct: 241 VKLERPADEPIAEAPAET 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806025|ref|NP_001241430.1| uncharacterized protein LOC100813273 [Glycine max] gi|255642505|gb|ACU21516.1| unknown [Glycine max]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/261 (86%), Positives = 243/261 (93%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS F+V+NVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSLFQVKNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +E+HA++KIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR  NQVKRTCYAQ+SQIRQIRRKMREIM  QA SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK LV KFI EIIG+EIEKAT SIYPLQNVF+RKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKMERPADEPIPEAPTEVIGA 261
            K++RPADE + E PTE++GA
Sbjct: 241 AKVDRPADEIVAEEPTEIVGA 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074782|gb|ACJ85751.1| unknown [Medicago truncatula] gi|388492750|gb|AFK34441.1| unknown [Medicago truncatula]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/261 (86%), Positives = 245/261 (93%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPF+KKDWYDIKAPS F+V+NVGKTLV+RTQGTKIAS+G
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +EEHA+RKIRLRAEDVQGKN+LTNFWGM+FTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEVSLADLQGDEEHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR  NQVKRTCYAQ+SQIRQIRRKM EIMI QA+SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMVEIMINQASSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LKGLV KFI E+IG+EIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+EDVG
Sbjct: 181 LKGLVHKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDVG 240

Query: 241 VKMERPADEPIPEAPTEVIGA 261
            K+ERPADE + E PTE++GA
Sbjct: 241 TKVERPADEMVTEEPTEIVGA 261

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806537|ref|NP_001241005.1| uncharacterized protein LOC100805519 [Glycine max] gi|255646854|gb|ACU23898.1| unknown [Glycine max]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/261 (86%), Positives = 244/261 (93%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS F+V+NVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +E+HA++KIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR  NQVKRTCYAQ+SQ+RQIRRKMREIM+ QAA+CD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQVRQIRRKMREIMVNQAAACD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK LV KFI E+IG+EIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKMERPADEPIPEAPTEVIGA 261
            K++RPADE + E  TEV+GA
Sbjct: 241 AKVDRPADETLAEEATEVVGA 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535985|ref|XP_003536521.1| PREDICTED: 40S ribosomal protein S3a-like [Glycine max]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/261 (86%), Positives = 243/261 (93%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS F+V+NVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +E+HA++KIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR  NQVKRTCYAQ+SQIRQIRRKMREIM  QA +CD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATACD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK LV KFI EIIG+EIEKAT SIYPLQNVF+RKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKMERPADEPIPEAPTEVIGA 261
            K++RPADE + E PTE++GA
Sbjct: 241 AKVDRPADEIVAEEPTEIVGA 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|406870061|gb|AFS65104.1| 40S ribosomal protein S3a-like protein [Elaeis guineensis]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/261 (86%), Positives = 241/261 (92%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKA DPFAKKDWYDIKAPS F VRN+GKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFE+SL DL N+E+ AYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEISLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR PNQVKRTCYAQ SQIRQIRRKMREIM+ QAASCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQTSQIRQIRRKMREIMVNQAASCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK LV+KFI E+IG+EIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY EDVG
Sbjct: 181 LKDLVQKFIPEVIGKEIEKATTSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKEDVG 240

Query: 241 VKMERPADEPIPEAPTEVIGA 261
           VK++RPAD+   E   EV+GA
Sbjct: 241 VKIDRPADDVPMEGEPEVVGA 261

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248303|ref|NP_001239858.1| uncharacterized protein LOC100808747 [Glycine max] gi|255646807|gb|ACU23875.1| unknown [Glycine max]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/261 (85%), Positives = 243/261 (93%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS F+V+N+GKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSLFQVKNIGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +E+H+++KIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEVSLADLQGDEDHSFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR  NQVKRTCYAQ+SQIRQIRRKMREIM+ QA +CD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATACD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK LV KFI E+IG+EIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKMERPADEPIPEAPTEVIGA 261
            K++RPADE + E  TEV+GA
Sbjct: 241 AKVDRPADETLAEEATEVVGA 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455292|ref|XP_004145387.1| PREDICTED: 40S ribosomal protein S3a-like [Cucumis sativus] gi|449472057|ref|XP_004153483.1| PREDICTED: 40S ribosomal protein S3a-like [Cucumis sativus]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/261 (87%), Positives = 242/261 (92%), Gaps = 1/261 (0%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKK  DPFAKKDWYDIKAPS F V+NVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +EEHAYRKIRLRAEDVQG+NVLTNFWGM+FTTDKLRSLVRKWHTL
Sbjct: 61  LKHRVFEVSLADLQEDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR PNQVKRTCYAQ+SQIRQIRRKMREIM+ QA SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK LV KFI E IG++IEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKMERPADEPIPEAPTEVIGA 261
           VK++RPA+E + E  TEV+GA
Sbjct: 241 VKVDRPAEEAV-EGATEVVGA 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2139574	262	AT4G34670 [Arabidopsis thalian	0.896	0.893	0.825	3.8e-101
TAIR|locus:2114840	262	AT3G04840 [Arabidopsis thalian	0.896	0.893	0.817	3.4e-100
UNIPROTKB|Q56JV9	264	RPS3A "40S ribosomal protein S	0.846	0.837	0.625	2.5e-72
UNIPROTKB|F2Z4Q5	264	RPS3A "Uncharacterized protein	0.846	0.837	0.625	2.5e-72
UNIPROTKB|P61247	264	RPS3A "40S ribosomal protein S	0.846	0.837	0.625	2.5e-72
UNIPROTKB|F2Z5C7	264	RPS3A "Uncharacterized protein	0.846	0.837	0.625	2.5e-72
UNIPROTKB|P61246	260	RPS3A "40S ribosomal protein S	0.846	0.85	0.625	2.5e-72
UNIPROTKB|A4R1I7	256	RPS1 "40S ribosomal protein S1	0.865	0.882	0.629	5.3e-72
MGI|MGI:1202063	264	Rps3a1 "ribosomal protein S3A1	0.846	0.837	0.620	5.3e-72
RGD|62078	264	Rps3a "ribosomal protein S3a"	0.846	0.837	0.620	5.3e-72

TAIR|locus:2139574 AT4G34670 [Arabidopsis thaliana (taxid:3702)]

 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 194/235 (82%), Positives = 211/235 (89%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP  F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E++AYRKIRLR
Sbjct:    28 DWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNAYRKIRLR 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
             AEDVQG+NVLT FWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD YTLRMFCI FTKR  
Sbjct:    88 AEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRA 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQVKRTCYAQ+SQIRQIRRKM EIM+ +A+SCDLK LV KFI E IGREIEKAT  IYPL
Sbjct:   148 NQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEAPTEVIGA 261
             QNVFIRKVKILKAPKFDLGKLMEVHGDY+ EDVGVK++RPADE + E PTE+IGA
Sbjct:   208 QNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 262

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2114840 AT3G04840 [Arabidopsis thaliana (taxid:3702)]

 Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
 Identities = 192/235 (81%), Positives = 211/235 (89%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAPS F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL  +E++AYRKIRLR
Sbjct:    28 DWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNAYRKIRLR 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
             AEDVQG+NVL  FWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD+YTLR+FCI FTKR  
Sbjct:    88 AEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRA 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQVKRTCYAQ+SQIRQIRRKMR+IM+ +A+SCDLK LV KFI E IGREIEKAT  IYPL
Sbjct:   148 NQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEAPTEVIGA 261
             QNVFIRKVKILKAPKFDLGKLM+VHGDYS EDVGVK++RPADE   E PTE+IGA
Sbjct:   208 QNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADEMAVEEPTEIIGA 262

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

UNIPROTKB|Q56JV9 RPS3A "40S ribosomal protein S3a" [Bos taurus (taxid:9913)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 145/232 (62%), Positives = 181/232 (78%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:    29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMERPAD--EP 250
              +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER AD  EP
Sbjct:   208 HDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER-ADGYEP 258

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F2Z4Q5 RPS3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 145/232 (62%), Positives = 181/232 (78%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:    29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMERPAD--EP 250
              +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER AD  EP
Sbjct:   208 HDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER-ADGYEP 258

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P61247 RPS3A "40S ribosomal protein S3a" [Homo sapiens (taxid:9606)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 145/232 (62%), Positives = 181/232 (78%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:    29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMERPAD--EP 250
              +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER AD  EP
Sbjct:   208 HDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER-ADGYEP 258

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IC;NAS;IMP;TAS

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0006413 "translational initiation" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0003723 "RNA binding" evidence=NAS

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F2Z5C7 RPS3A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 145/232 (62%), Positives = 181/232 (78%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:    29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMERPAD--EP 250
              +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER AD  EP
Sbjct:   208 HDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER-ADGYEP 258

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P61246 RPS3A "40S ribosomal protein S3a" [Felis catus (taxid:9685)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 145/232 (62%), Positives = 181/232 (78%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:    25 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 83

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    84 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 143

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   144 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 203

Query:   208 QNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMERPAD--EP 250
              +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER AD  EP
Sbjct:   204 HDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER-ADGYEP 254

GO:0030529 "ribonucleoprotein complex" evidence=ISS

UNIPROTKB|A4R1I7 RPS1 "40S ribosomal protein S1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 143/227 (62%), Positives = 177/227 (77%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWY IKAP+ F +R+VGKTLV R+ G K A++ LK R+FEVSL DL  +E+HA+RKI+LR
Sbjct:    28 DWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQKDEDHAFRKIKLR 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              ++VQGKN LTNF G+DFT+DKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR P
Sbjct:    88 VDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRP 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+K+T YA +SQIR IRRKM EI+  +A++C L+ L  K I E+IGREIEKAT  IYPL
Sbjct:   148 NQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEKATQGIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEVHGDYSEDV-GVKMERPADEPIPE 253
             QNV IRKVK+LK PKFDLG L+ +HG+ + D  G K+ER   E + E
Sbjct:   208 QNVHIRKVKLLKQPKFDLGGLLALHGESTTDEQGQKVEREFKERVLE 254

GO:0043581 "mycelium development" evidence=IEP

MGI|MGI:1202063 Rps3a1 "ribosomal protein S3A1" [Mus musculus (taxid:10090)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 144/232 (62%), Positives = 180/232 (77%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:    29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMERPAD--EP 250
              +VF+RKVK+LK PKF+LGKLME+HG+         ++ G K+ER AD  EP
Sbjct:   208 HDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVER-ADGYEP 258

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

GO:0030154 "cell differentiation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0031369 "translation initiation factor binding" evidence=ISO

RGD|62078 Rps3a "ribosomal protein S3a" [Rattus norvegicus (taxid:10116)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 144/232 (62%), Positives = 180/232 (77%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:    29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMERPAD--EP 250
              +VF+RKVK+LK PKF+LGKLME+HG+         ++ G K+ER AD  EP
Sbjct:   208 HDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVER-ADGYEP 258

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0006412 "translation" evidence=ISO;ISS

GO:0006917 "induction of apoptosis" evidence=ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS

GO:0031369 "translation initiation factor binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0UFP1	RS3A_PHANO	No assigned EC number	0.6547	0.9578	0.9803	N/A	no
Q9CAV0	RS3A1_ARATH	No assigned EC number	0.8244	1.0	0.9961	no	no
A6RZS5	RS3A_BOTFB	No assigned EC number	0.6417	0.9693	0.9882	N/A	no
Q6C2R9	RS3A_YARLI	No assigned EC number	0.6181	0.9731	0.9960	yes	no
A5B4K1	RS3A1_VITVI	No assigned EC number	0.8582	1.0	1.0	yes	no
B6JWF7	RS3A_SCHJY	No assigned EC number	0.6378	0.9272	0.9603	N/A	no
A1CZL7	RS3A_NEOFI	No assigned EC number	0.6549	0.9731	0.9921	N/A	no
Q2GW51	RS3A_CHAGB	No assigned EC number	0.6549	0.9731	0.9921	N/A	no
Q42262	RS3A2_ARATH	No assigned EC number	0.8320	1.0	0.9961	yes	no
B2VUE4	RS3A_PYRTR	No assigned EC number	0.6732	0.9655	0.9882	N/A	no
C1HDW2	RS3A_PARBA	No assigned EC number	0.6431	0.9693	0.9921	N/A	no
C1GGT8	RS3A_PARBD	No assigned EC number	0.6431	0.9693	0.9921	N/A	no
B0Y356	RS3A_ASPFC	No assigned EC number	0.6549	0.9731	0.9921	N/A	no
Q764D2	RS3A_LENED	No assigned EC number	0.692	0.9578	0.9765	N/A	no
Q9MBB3	RS3A_DAUCA	No assigned EC number	0.8352	1.0	1.0	N/A	no
C7YTD6	RS3A_NECH7	No assigned EC number	0.6496	0.9693	0.9882	N/A	no
Q5AS60	RS3A_EMENI	No assigned EC number	0.6352	0.9731	0.9921	yes	no
Q0CA00	RS3A_ASPTN	No assigned EC number	0.6470	0.9731	0.9921	N/A	no
A8QD49	RS3A_MALGO	No assigned EC number	0.5984	0.9693	0.9730	N/A	no
Q871N9	RS3A_NEUCR	No assigned EC number	0.6549	0.9731	0.9921	N/A	no
B6HFE0	RS3A_PENCW	No assigned EC number	0.6274	0.9731	0.9921	yes	no
B0CY45	RS3A_LACBS	No assigned EC number	0.664	0.9578	0.9765	N/A	no
Q4KTD9	RS3A_SUBDO	No assigned EC number	0.6403	0.9578	0.9920	N/A	no
A2R9S1	RS3A_ASPNC	No assigned EC number	0.6470	0.9731	0.9921	yes	no
Q5CP76	RS3A_CRYHO	No assigned EC number	0.5816	0.9540	0.9503	N/A	no
P49397	RS3A_ORYSJ	No assigned EC number	0.84	0.9540	0.9503	yes	no
P49396	RS3A_BRARA	No assigned EC number	0.8212	0.9961	0.9923	N/A	no
B8NSD4	RS3A_ASPFN	No assigned EC number	0.6509	0.9731	0.9921	N/A	no
C0SH35	RS3A_PARBP	No assigned EC number	0.6431	0.9693	0.9921	N/A	no
Q4WTM9	RS3A_ASPFU	No assigned EC number	0.6549	0.9731	0.9921	yes	no
Q8GTE3	RS3A_CICAR	No assigned EC number	0.8467	1.0	1.0	N/A	no
B8PIG4	RS3A_POSPM	No assigned EC number	0.676	0.9578	0.9765	N/A	no
A7E4H3	RS3A_SCLS1	No assigned EC number	0.6417	0.9693	0.9882	N/A	no
O94438	RS3A2_SCHPO	No assigned EC number	0.6337	0.9272	0.9603	yes	no
P33444	RS3A_CATRO	No assigned EC number	0.8473	0.9961	0.9961	N/A	no
Q2UTI8	RS3A_ASPOR	No assigned EC number	0.6509	0.9731	0.9921	yes	no
B9W790	RS3A_CANDC	No assigned EC number	0.6386	0.9118	0.9296	yes	no
P49198	RS3A_HELAN	No assigned EC number	0.8693	0.9386	0.9423	N/A	no
B6QGS2	RS3A_PENMQ	No assigned EC number	0.6392	0.9731	0.9921	N/A	no
A8HS48	RS3A_CHLRE	No assigned EC number	0.7836	0.9386	0.9459	N/A	no
A4R1I7	RS3A_MAGO7	No assigned EC number	0.6496	0.9693	0.9882	N/A	no
C5FIC5	RS3A_ARTOC	No assigned EC number	0.6392	0.9693	0.9921	N/A	no
A4SAD2	RS3A_OSTLU	No assigned EC number	0.7419	0.9463	0.95	yes	no
B8MBY6	RS3A_TALSN	No assigned EC number	0.6392	0.9731	0.9921	N/A	no
A7Q5X9	RS3A2_VITVI	No assigned EC number	0.8913	0.8812	0.9829	no	no
A8NX92	RS3A_COPC7	No assigned EC number	0.66	0.9578	0.9765	N/A	no
Q9XEG7	RS3A_TORRU	No assigned EC number	0.7172	0.9195	0.9677	N/A	no
A1C4N6	RS3A_ASPCL	No assigned EC number	0.6509	0.9731	0.9921	N/A	no
Q285L8	RS3A_TOBAC	No assigned EC number	0.8352	1.0	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.X.5793.1	SubName- Full=Putative uncharacterized protein; (250 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XVI.1998.1	SubName- Full=Putative uncharacterized protein; (204 aa)				•	•	•	•		0.813
	eugene3.00061162	SubName- Full=Putative uncharacterized protein; (208 aa)				•	•	•	•		0.808
	estExt_fgenesh4_pm.C_LG_XVII0043	SubName- Full=Putative uncharacterized protein; (206 aa)				•	•	•	•		0.723
	eugene3.00002480	SubName- Full=Putative uncharacterized protein; (206 aa)				•	•	•	•		0.716
	estExt_fgenesh4_kg.C_LG_XVII0009	SubName- Full=Putative uncharacterized protein; (144 aa)				•	•	•	•		0.706
	eugene3.00041113	hypothetical protein (144 aa)				•	•	•	•		0.696
	gw1.I.3503.1	annotation not avaliable (201 aa)				•	•	•	•		0.683
	estExt_fgenesh4_pg.C_LG_X2153	SubName- Full=Putative uncharacterized protein; (105 aa)			•	•	•	•	•		0.682
	fgenesh4_kg.C_LG_V000020	SubName- Full=Putative uncharacterized protein; (106 aa)			•	•	•	•	•		0.682
	estExt_fgenesh4_pg.C_LG_VII0715	SubName- Full=Putative uncharacterized protein; (106 aa)			•	•	•	•	•		0.679

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
pfam01015	195	pfam01015, Ribosomal_S3Ae, Ribosomal S3Ae family	3e-93
COG1890	214	COG1890, RPS1A, Ribosomal protein S3AE [Translatio	1e-70
PRK04057	203	PRK04057, PRK04057, 30S ribosomal protein S3Ae; Va	8e-38

>gnl|CDD|216245 pfam01015, Ribosomal_S3Ae, Ribosomal S3Ae family

 Score =  272 bits (698), Expect = 3e-93
 Identities = 105/211 (49%), Positives = 130/211 (61%), Gaps = 16/211 (7%)

Query: 12  GKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLG 71
             K GKKK  DP+ +K+WYD+KAP+ F  R +GKT            E LK RV EVSL 
Sbjct: 1   AGKKGKKKVVDPWKRKEWYDVKAPAMFGSREIGKTPAND-------PEKLKGRVVEVSLA 53

Query: 72  DLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTD 131
           DL  +   + RK++ + EDVQG N LTNF G + T D LRSLVR+W + IEA VDVKT D
Sbjct: 54  DLTGDYSKSNRKLKFKIEDVQGDNALTNFHGHELTRDYLRSLVRRWTSKIEAIVDVKTKD 113

Query: 132 NYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAE 191
            Y LR+F I FTK+          AQ SQ R IR+KM EI+  +A+  D K  V+K I  
Sbjct: 114 GYLLRVFVIAFTKK---------RAQTSQKRAIRKKMTEIITKEASELDFKEFVQKLIPG 164

Query: 192 IIGREIEKATLSIYPLQNVFIRKVKILKAPK 222
            I ++IEKA   IYPL+ V IRKVK+LK PK
Sbjct: 165 SIAKDIEKAAKKIYPLRRVEIRKVKVLKRPK 195

Length = 195

>gnl|CDD|224802 COG1890, RPS1A, Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]

 Score =  216 bits (551), Expect = 1e-70
 Identities = 93/231 (40%), Positives = 127/231 (54%), Gaps = 18/231 (7%)

Query: 10  SKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVS 69
             GKKG +KK  D + +K WY IKAP  F    VGKT            + L  RV EV+
Sbjct: 1   MAGKKG-QKKVRDKWKEKKWYTIKAPPYFGGVEVGKTPAND-------PDKLIGRVVEVT 52

Query: 70  LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKT 129
           L DL  +   ++RK++ R +DV+G   LT F G + T D +RSLVR+  + I+A VDVKT
Sbjct: 53  LADLTGDFSKSHRKLKFRIDDVEGDKALTRFKGHELTRDYIRSLVRRRTSRIDAIVDVKT 112

Query: 130 TDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFI 189
            D Y LR+  + FT+R          A+ SQ R IR+ M EI+  +A+    +  V++ I
Sbjct: 113 KDGYVLRVKAMAFTRR---------RAKTSQKRAIRKIMFEIIEEKASELTFEEFVQELI 163

Query: 190 AEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
              I  EIE+A   IYPL+ V IRK K+LK PK    +   +H   SE+VG
Sbjct: 164 PGRIAAEIEEAAKKIYPLRKVEIRKSKVLKEPKEAEPEQAVLH-GESEEVG 213

Length = 214

>gnl|CDD|235216 PRK04057, PRK04057, 30S ribosomal protein S3Ae; Validated

 Score =  131 bits (332), Expect = 8e-38
 Identities = 68/204 (33%), Positives = 101/204 (49%), Gaps = 16/204 (7%)

Query: 19  KAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEE 78
           +  D + +K WY + AP  F    +G+T            E L  RV E +LGDL  +  
Sbjct: 1   RVKDKWKEKKWYTVYAPEFFGGVEIGETPADD-------PEKLIGRVVETTLGDLTGDFS 53

Query: 79  HAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMF 138
               K+  + ++V+G    T F G + T D LRSLVR+  + I+A VDV T D Y +R+ 
Sbjct: 54  KQNVKLYFKIDNVEGDKAYTRFIGHELTRDYLRSLVRRRTSKIDAIVDVTTKDGYKVRVK 113

Query: 139 CIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIE 198
            +  T       KR   A+ SQ   IR+ M EI+  +A+    +  V++ +   +  EI 
Sbjct: 114 PVALT------TKR---ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIY 164

Query: 199 KATLSIYPLQNVFIRKVKILKAPK 222
           K    IYPL+ V IRK K+L  P+
Sbjct: 165 KEAKKIYPLRRVEIRKSKVLARPE 188

Length = 203

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
KOG1628	249	consensus 40S ribosomal protein S3A [Translation,	100.0
PF01015	194	Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: I	100.0
PRK04057	203	30S ribosomal protein S3Ae; Validated	100.0
COG1890	214	RPS1A Ribosomal protein S3AE [Translation, ribosom	100.0
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	85.58

>KOG1628 consensus 40S ribosomal protein S3A [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-87  Score=598.95  Aligned_cols=233  Identities=69%  Similarity=1.052  Sum_probs=229.6

Q ss_pred             CcCCCcccccCcCCCcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCcEEEEeccCCCCchhhce
Q 024879            2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAY   81 (261)
Q Consensus         2 a~gknk~~~kgkKg~kkk~~D~f~kK~WY~V~AP~~F~~~~iG~T~v~kt~g~k~~~d~l~GRv~EvsLaDL~~d~~~~~   81 (261)
                      |+|||+++++||||+++|++|||++|+||+++||.+|+.+++|+|+++||+|+++++++ +||+|||+|+||+ |++.+|
T Consensus         1 avgkn~~~~~~K~g~kkk~~~p~s~k~~~d~ka~~~~~~~~~~~~l~~~t~g~k~~~~~-~gr~~~v~~~dl~-n~e~af   78 (249)
T KOG1628|consen    1 AVGKNKRLSGGKKGAKKKAVDPFSRKDWYDVKAPPMFPARNVGKTLVNRTQGTKGASDG-KGRVVEVSLADLQ-NEEVAF   78 (249)
T ss_pred             CCccccccccCccCCCCCCCCCcccccccccCCcccccCCChhheeccccccccccccC-CCceeeechhhcc-chhhhh
Confidence            79999999988999999999999999999999999999999999999999999999999 9999999999999 558999


Q ss_pred             eEEEEEEeeecCCeeeEeeecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccCCcCccchhhhhhhh
Q 024879           82 RKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQI  161 (261)
Q Consensus        82 rK~kf~i~~V~G~~a~T~F~GmelT~DklrSlVrK~~t~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~SQi  161 (261)
                      |||+|++++|+|+||+|+||||+||+|++|||++||||+|||+|+|+|.|||+|||||++||++++||.++|||||+||+
T Consensus        79 rK~kli~edvqgkN~lt~f~GmdlT~dK~~smvkKwqt~ieA~v~vkT~dgy~Lrlf~i~ftkk~~nqv~ktsyaq~~qv  158 (249)
T KOG1628|consen   79 RKFKLIAEDVQGKNCLTNFHGMDLTRDKLVSMVKKWQTLIEAVVDVKTTDGYLLRLFCIGFTKKLVNQVKKTSYAQHGQV  158 (249)
T ss_pred             heeeeeeccccCcccceeccCcchhhhhhhhhhhhhhheeeeeEEeecccCceEEeeehHHHHHhhcccCCceeeecchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhCCHHHHHHHHhhhhHHHHHHHhccccccccceeEEEEEeeeCCccccchhhhhcCCcc
Q 024879          162 RQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS  236 (261)
Q Consensus       162 ~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~~~kl~e~~~~~~  236 (261)
                      ++||++|+|||+++++++||++++++|||++|+++||++|+.|||||+|+|||||+|+.|+||++|||||||+++
T Consensus       159 ~~irk~m~ei~~~evs~~Dlk~vvnKLipd~igKdiEka~~~iyPL~~v~vRKVK~lK~pkfelGkl~eLHGegs  233 (249)
T KOG1628|consen  159 RQIRKEMMEIMTQEVSTSDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGS  233 (249)
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHhchhhhhhHHHhhccccccchhheeeeeeccccccchhhHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999973

>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.2e-81  Score=552.41  Aligned_cols=194  Identities=62%  Similarity=0.955  Sum_probs=166.3

Q ss_pred             CcCCCcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCcEEEEeccCCCCchhhceeEEEEEEeee
Q 024879           12 GKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDV   91 (261)
Q Consensus        12 gkKg~kkk~~D~f~kK~WY~V~AP~~F~~~~iG~T~v~kt~g~k~~~d~l~GRv~EvsLaDL~~d~~~~~rK~kf~i~~V   91 (261)
                      ||||+ +|++|+|++|+||+|+||++|+.++||+||++       .||+|+|||||+||+||+||++++|+||+|+|++|
T Consensus         1 ~kK~~-kk~~d~~~~K~WY~V~AP~~F~~~~iG~T~~~-------~~~~l~gRv~Evsl~DL~~d~~~~~~K~~f~i~~V   72 (194)
T PF01015_consen    1 GKKGK-KKVVDPWKKKEWYDVKAPSMFGNRNIGKTPAN-------KPEKLKGRVFEVSLADLTNDFSKAYRKFKFKIEDV   72 (194)
T ss_dssp             ----S----S-TTTTEEEEEEE--TTSSSSEECEEEEE--------CCCCCC-EEEEECHCCCSTTTTSS-EEEEEEEEE
T ss_pred             CCCCc-ccccCCCccceeEEEECCHHhCcceeeEEEcC-------CcccccCeEEEEEHHHhcCchhhhcEEEEEEEEee
Confidence            57788 88899999999999999999999999999999       59999999999999999999999999999999999


Q ss_pred             cCCeeeEeeecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccCCcCccchhhhhhhhHHHHHHHHHH
Q 024879           92 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREI  171 (261)
Q Consensus        92 ~G~~a~T~F~GmelT~DklrSlVrK~~t~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~SQi~~IRk~m~ei  171 (261)
                      +|++|+|+|||||||+||||||||||||+||+++||+|+|||+|||||+|||+++         |++||+++||++|+++
T Consensus        73 ~g~~a~T~F~G~elt~D~lrSlvrk~~s~Ie~~~dvkT~DGy~lRvf~i~fT~~r---------a~~sq~~~IRk~m~~i  143 (194)
T PF01015_consen   73 QGNNALTNFHGMELTRDKLRSLVRKWQSRIEAIVDVKTKDGYLLRVFCIAFTKKR---------AKSSQIKAIRKKMVEI  143 (194)
T ss_dssp             ETTEEEEEEEEEE--HHHHHHC--TTC-EEEEEEEEEETTTEEEEEEEEEEE-------------TCHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEcceecchhhhhcceeecceEEEEEEEEEcCCCcEEEEEEEEEEeec---------ccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999         9999999999999999


Q ss_pred             HHHHHhhCCHHHHHHHHhhhhHHHHHHHhccccccccceeEEEEEeeeCCc
Q 024879          172 MIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPK  222 (261)
Q Consensus       172 i~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk  222 (261)
                      |++++++++|+|||++|++|+|++||+++|++|||||+|+|||||||+.|+
T Consensus       144 i~~~~~~~~~~e~V~~li~~~i~~eI~k~~k~IyPl~~v~IrKvKvlk~Pk  194 (194)
T PF01015_consen  144 ITEEASELDLKELVKKLIPGSIGKEIEKACKKIYPLRNVEIRKVKVLKKPK  194 (194)
T ss_dssp             HHHHCCTSHHHHHHHHHCTTHHHHHHHHHHCTT--EEEEEEEEEEEEE---
T ss_pred             HHHHhccCcHHHHHHHHccchHHHHHHHHhccccccceEEEEEEEEeccCC
Confidence            999999999999999999999999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.

>PRK04057 30S ribosomal protein S3Ae; Validated

Probab=100.00  E-value=1.1e-78  Score=536.64  Aligned_cols=189  Identities=35%  Similarity=0.541  Sum_probs=186.7

Q ss_pred             ccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCcEEEEeccCCCCchhhceeEEEEEEeeecCCeeeEe
Q 024879           20 AADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTN   99 (261)
Q Consensus        20 ~~D~f~kK~WY~V~AP~~F~~~~iG~T~v~kt~g~k~~~d~l~GRv~EvsLaDL~~d~~~~~rK~kf~i~~V~G~~a~T~   99 (261)
                      ++|||++|+||+|+||++|+.++||+||++       +|+.|+|||||+||+||+||++++|+||+|+|++|+|++|+|+
T Consensus         2 ~~D~w~~K~WY~V~AP~~F~~~~iG~T~a~-------~~~~l~GRv~EvsL~DL~~d~~~~~~K~~f~i~~V~G~~a~T~   74 (203)
T PRK04057          2 VKDKWKEKKWYTVYAPEFFGGVEIGETPAD-------DPEKLIGRVVETTLGDLTGDFSKQNVKLYFKIDNVEGDKAYTR   74 (203)
T ss_pred             CCCcccccceEEEECCcccCCceEEEEEcc-------ChhhcCCcEEEEEHHHhcCChhhceEEEEEEEEeeeCCEEEEE
Confidence            589999999999999999999999999998       9999999999999999999999999999999999999999999


Q ss_pred             eecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccCCcCccchhhhhhhhHHHHHHHHHHHHHHHhhC
Q 024879          100 FWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASC  179 (261)
Q Consensus       100 F~GmelT~DklrSlVrK~~t~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~SQi~~IRk~m~eii~~~~~~~  179 (261)
                      ||||+||+||||||||||+|+||+++||+|+|||.|||||+|||.++         |++||+++||++|.++|.++++++
T Consensus        75 F~G~~lTrD~lrSlVrk~~S~Ie~~vdvkTkDGy~lRv~~i~~T~~r---------a~~sq~~~IRk~m~~~i~~~~~~~  145 (203)
T PRK04057         75 FIGHELTRDYLRSLVRRRTSKIDAIVDVTTKDGYKVRVKPVALTTKR---------ARTSQKHAIRKIMEEIIEEKASEL  145 (203)
T ss_pred             EeeeEecHHHHHhHhccCceeEEEEEEEEcCCCCEEEEEEEEEEchh---------hhhhHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999998         999999999999999999999999


Q ss_pred             CHHHHHHHHhhhhHHHHHHHhccccccccceeEEEEEeeeCCccc
Q 024879          180 DLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFD  224 (261)
Q Consensus       180 ~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~  224 (261)
                      +|+|||+++++|+|++||+++|++|||||+|+|||+|||+.|+..
T Consensus       146 ~~~e~V~~~i~g~i~~eI~~~~k~IyPlr~veIrKvkvl~~p~~~  190 (203)
T PRK04057        146 TFEEFVQEIVFGKLASEIYKEAKKIYPLRRVEIRKSKVLARPEEV  190 (203)
T ss_pred             CHHHHHHHHccchHHHHHHHhhhhccCcceEEEEEEEEEecCccc
Confidence            999999999999999999999999999999999999999999965

>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.8e-77  Score=523.33  Aligned_cols=208  Identities=43%  Similarity=0.643  Sum_probs=201.4

Q ss_pred             cCcCCCcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCcEEEEeccCCCCchhhceeEEEEEEee
Q 024879           11 KGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAED   90 (261)
Q Consensus        11 kgkKg~kkk~~D~f~kK~WY~V~AP~~F~~~~iG~T~v~kt~g~k~~~d~l~GRv~EvsLaDL~~d~~~~~rK~kf~i~~   90 (261)
                      +|+||.+| ++|+|+.|.||+|+||++|+..++|+||++       +||.|+||++|+||+|||||++++|+|++|+|++
T Consensus         2 ~~~k~~~k-v~Dkwk~K~Wy~i~AP~~fg~~~vG~t~a~-------dp~~ligR~vEvtl~DLtgd~~~~~~K~~FrI~~   73 (214)
T COG1890           2 AGKKGQKK-VRDKWKEKKWYTIKAPPYFGGVEVGKTPAN-------DPDKLIGRVVEVTLADLTGDFSKSHRKLKFRIDD   73 (214)
T ss_pred             Cccccccc-ccCchhhceeEEEeCchhhCcccccccccc-------ChHHhhCceEEEEHHHhcCCcccceEEEEEEEee
Confidence            35666665 899999999999999999999999999999       9999999999999999999999999999999999


Q ss_pred             ecCCeeeEeeecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccCCcCccchhhhhhhhHHHHHHHHH
Q 024879           91 VQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMRE  170 (261)
Q Consensus        91 V~G~~a~T~F~GmelT~DklrSlVrK~~t~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~SQi~~IRk~m~e  170 (261)
                      |+|++|+|+|+|||||+||+|||||||+|+||+++||+|+|||.||||+++||.+|         |++||+++||++|+|
T Consensus        74 v~G~~a~T~F~GheltrDyiRslVRR~~SrIdai~dVkTkDGy~~RV~~~~~T~~r---------a~tSqk~aIRk~M~e  144 (214)
T COG1890          74 VEGDKALTRFKGHELTRDYIRSLVRRRTSRIDAIVDVKTKDGYVLRVKAMAFTRRR---------AKTSQKRAIRKIMFE  144 (214)
T ss_pred             ccCcEeeEEEeccchhHHHHHHHHhcccceeeeEEEEEecCCcEEEEEEEEEEehh---------cccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999         999999999999999


Q ss_pred             HHHHHHhhCCHHHHHHHHhhhhHHHHHHHhccccccccceeEEEEEeeeCCccccchhhhhcCCc
Q 024879          171 IMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY  235 (261)
Q Consensus       171 ii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~~~kl~e~~~~~  235 (261)
                      +|.+.+++++|++||++|++|.|+++|+++|++|||||+|||||+|||+.|+.+.....++|+++
T Consensus       145 ii~~~a~e~~f~~fv~~li~g~i~~~I~~~akkIyPLr~veIrK~kvl~~p~~~~~~~~~~~~~~  209 (214)
T COG1890         145 IIEEKASELTFEEFVQELIPGRIAAEIEEAAKKIYPLRKVEIRKSKVLKEPKEAEPEQAVLHGES  209 (214)
T ss_pred             HHHHHhccCCHHHHHHHHhhhhHHHHHHHHhhhcccchheEEEeeeeeccCcccccchhcccccc
Confidence            99999999999999999999999999999999999999999999999999999988888888864

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=85.58  E-value=5.4  Score=36.26  Aligned_cols=91  Identities=18%  Similarity=0.163  Sum_probs=63.5

Q ss_pred             EEEEeCCCcEEEEEEEEEeeccCCcCccchhhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHhhhhHHHHHHHhcccc
Q 024879          125 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSI  204 (261)
Q Consensus       125 vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~SQi~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~I  204 (261)
                      .++.|+||..+.|-++++-+=......+-.|--......|+..+...|.+.+...++++++..  -+.|..+|....+..
T Consensus        46 ~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~--R~~I~~~i~~~l~~~  123 (262)
T cd03407          46 VETKTKDNVFVTVVGQIQYRVSEENATDAFYKLGNPEEQIQSYVFDVLRARIPKLTLDELFEQ--KDEIAKAVEEELREA  123 (262)
T ss_pred             CceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccHHHHHhh--HHHHHHHHHHHHHHH
Confidence            456899999999888876665432222445554555679999999999999999999999954  355666666555554


Q ss_pred             ccccceeEEEEEe
Q 024879          205 YPLQNVFIRKVKI  217 (261)
Q Consensus       205 yPl~~V~IrKvKv  217 (261)
                      .--.-|.|..|.+
T Consensus       124 l~~~GI~V~~v~I  136 (262)
T cd03407         124 MSRYGFEIVATLI  136 (262)
T ss_pred             HHhcCcEEEEEEE
Confidence            4334566666654

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	261
3u5c_B	255	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-71
2xzm_4	265	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-50
3zey_0	256	High-resolution Cryo-electron Microscopy Structure		6e-46
3j20_A	198	Promiscuous Behavior Of Proteins In Archaeal Riboso		9e-20

>pdb|3U5C|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 255

Iteration: 1
 Score =  265 bits (678), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/223 (57%), Positives = 163/223 (73%), Gaps = 1/223 (0%)
Query: 28  DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
           +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++RKI+LR
Sbjct: 28  EWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSFRKIKLR 87
Query: 88  AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
            ++VQGKN+LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++  
Sbjct: 88  VDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQA 147
Query: 148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
           NQVKR  YAQ+S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PL
Sbjct: 148 NQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPL 207
Query: 208 QNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 249
           QN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct: 208 QNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250

>pdb|2XZM|4 Chain 4, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 265

Iteration: 1
 Score =  194 bits (492), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 95/210 (45%), Positives = 138/210 (65%), Gaps = 4/210 (1%)
Query: 28  DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLH-NEEEHAYRKIRL 86
           +WYD +AP  F  ++ GKTLVT++ G +IASE +K RV E +L DL  N  + A+RK++L
Sbjct: 30  EWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDKAWRKVKL 89
Query: 87  RAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRL 146
             ++V G+N  T+F+G+D T D+L S++RKW TLIEA VD KT D Y +R+F + FTK+ 
Sbjct: 90  VIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKT 149
Query: 147 P---NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLS 203
                    TCYA++SQ+R IRRK+   +  +AA   +    +  I E   ++IEK T +
Sbjct: 150 SAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKN 209
Query: 204 IYPLQNVFIRKVKILKAPKFDLGKLMEVHG 233
           I+PLQN+ IRKVK+LK PK D  K+ E++ 
Sbjct: 210 IFPLQNITIRKVKVLKRPKLDATKIAELYS 239

>pdb|3ZEY|0 Chain 0, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 256

Iteration: 1
 Score =  180 bits (457), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/209 (42%), Positives = 132/209 (63%), Gaps = 2/209 (0%)
Query: 28  DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLH--NEEEHAYRKIR 85
           +WYD+ AP  F VR   KT+  +TQGTKIA++ L+ RV+E +L DL+    E+ AYRK++
Sbjct: 28  EWYDVVAPKNFEVRQFAKTICNKTQGTKIAADFLRGRVYEGNLADLNKTQNEDDAYRKVK 87
Query: 86  LRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKR 145
              ++VQG+N+LT F GMD T+D++  L+RKW T IEA V+ KT D Y LR+F I FTK+
Sbjct: 88  FTVQEVQGRNLLTQFHGMDMTSDRVYYLLRKWCTTIEATVEAKTADGYGLRLFLIAFTKK 147
Query: 146 LPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIY 205
             NQ+ + CYA+   ++ +R +   I+  + A  D+   V      I+   + K    I 
Sbjct: 148 QENQLSKNCYAKTRLVKWVRMRATNIIRRRLAKLDINDAVSLLTRNILRDRLAKRCNPII 207
Query: 206 PLQNVFIRKVKILKAPKFDLGKLMEVHGD 234
           PL+++ IRKVK+++ PKFD   L+  HG+
Sbjct: 208 PLRDLRIRKVKVIRTPKFDAQALIAAHGE 236

>pdb|3J20|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 198

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 94/194 (48%), Gaps = 16/194 (8%)
Query: 29  WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRA 88
           WY I AP  F    VG T            E + +RV EV+L D+  +   ++ K+  + 
Sbjct: 18  WYIIYAPDFFGGVEVGLTPAD-------DPEKVLNRVVEVTLKDVTGDFTKSHVKLYFQV 70
Query: 89  EDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPN 148
            DV+G+N  T F GM      +RSLVR+  T I+   ++ T D Y LR+  +    R   
Sbjct: 71  YDVKGQNAYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMRR-- 128
Query: 149 QVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQ 208
                   Q SQ R IR+ M+EI+  +A   + K  V + +   I  EI K    IYPL+
Sbjct: 129 -------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLR 181
Query: 209 NVFIRKVKILKAPK 222
              IRK+K+L+ P+
Sbjct: 182 KAEIRKIKVLEEPQ 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
3u5c_B	255	RP10A, 40S ribosomal protein S1-A; translation, ri	1e-108
2xzm_4	265	40S ribosomal protein S3A; ribosome, translation;	1e-99
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B Length = 255

 Score =  313 bits (802), Expect = e-108
 Identities = 149/250 (59%), Positives = 186/250 (74%), Gaps = 1/250 (0%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKR+SKGKKG KK+  DPF +K+W+DIKAPS F  RNVGKTLV ++ G K AS+ 
Sbjct: 1   MAVGKNKRLSKGKKGQKKRVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDA 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LK RV EV L DL   E+H++RKI+LR ++VQGKN+LTNF GMDFTTDKLRS+VRKW TL
Sbjct: 61  LKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +     
Sbjct: 121 IEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGST 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDV 239
           L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ 
Sbjct: 181 LAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEK 240

Query: 240 GVKMERPADE 249
           G K+    DE
Sbjct: 241 GKKVTGFKDE 250

>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4 Length = 265

 Score =  290 bits (744), Expect = 1e-99
 Identities = 108/265 (40%), Positives = 159/265 (60%), Gaps = 12/265 (4%)

Query: 1   MAVGKNKRISKGKK--GGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIAS 58
           M  GKN  +  G    G KK+  DP ++K+WYD +AP  F  ++ GKTLVT++ G +IAS
Sbjct: 1   MTQGKNPGLKAGGGKKGAKKRTIDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIAS 60

Query: 59  EGLKHRVFEVSLGDLHN-EEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW 117
           E +K RV E +L DL +   + A+RK++L  ++V G+N  T+F+G+D T D+L S++RKW
Sbjct: 61  EEIKGRVVESTLADLKDNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKW 120

Query: 118 HTLIEAYVDVKTTDNYTLRMFCIGFTKRLP---NQVKRTCYAQASQIRQIRRKMREIMIA 174
            TLIEA VD KT D Y +R+F + FTK+          TCYA++SQ+R IRRK+   +  
Sbjct: 121 QTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITN 180

Query: 175 QAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 234
           +AA   +    +  I E   ++IEK T +I+PLQN+ IRKVK+LK PK D  K+ E++  
Sbjct: 181 EAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELYSH 240

Query: 235 YS------EDVGVKMERPADEPIPE 253
                      G   E+ A   + +
Sbjct: 241 EKKGEKATGRDGAPEEQAAQNLLAQ 265

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 43/272 (15%), Positives = 86/272 (31%), Gaps = 67/272 (24%)

Query: 12  GKKG-GKKK-AADPFAKKDWYDIKAPSCFRVR--NVGKTLVTRTQGTKIASEGLKHRVFE 67
           G  G GK   A D       Y ++    F++   N+        +      + L +++  
Sbjct: 157 GVLGSGKTWVALD--VCLS-YKVQCKMDFKIFWLNLKN--CNSPETVLEMLQKLLYQI-- 209

Query: 68  VSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW---HTLIEAY 124
               +  +  +H+   I+LR   +Q                +LR L++     + L+   
Sbjct: 210 --DPNWTSRSDHSSN-IKLRIHSIQ---------------AELRRLLKSKPYENCLL--- 248

Query: 125 V--DVKTTDNYTLRMF---C-IGFTKRLPNQVKRTCYAQASQIRQI-------RRKMREI 171
           V  +V+  +      F   C I  T R          A  + I            +++ +
Sbjct: 249 VLLNVQ--NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 172 MIAQAASCDLKGLVEK------FIAEIIGREIEKATLSIYPLQNVFIRKV-KILKAPKFD 224
            + +   C  + L  +          II   I     +    ++V   K+  I+++    
Sbjct: 307 -LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES---S 362

Query: 225 LGKL--MEVHGDYSEDVGVKMERPADEPIPEA 254
           L  L   E    + + + V    P    IP  
Sbjct: 363 LNVLEPAEYRKMF-DRLSV---FPPSAHIPTI 390

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
3u5c_B	255	RP10A, 40S ribosomal protein S1-A; translation, ri	100.0
2xzm_4	265	40S ribosomal protein S3A; ribosome, translation;	100.0
3j20_A	198	30S ribosomal protein S3AE; archaea, archaeal, KIN	100.0
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	86.73
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	80.1

>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B

Probab=100.00  E-value=8.9e-110  Score=752.91  Aligned_cols=248  Identities=59%  Similarity=0.942  Sum_probs=213.7

Q ss_pred             CCcCCCcccccCcCCCcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCcEEEEeccCCCCchhhc
Q 024879            1 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHA   80 (261)
Q Consensus         1 Ma~gknk~~~kgkKg~kkk~~D~f~kK~WY~V~AP~~F~~~~iG~T~v~kt~g~k~~~d~l~GRv~EvsLaDL~~d~~~~   80 (261)
                      |||||||+|+|||||+|||++|||++|+||+|+||++|+.++||+|||+||||++|+||+|+|||||+|||||+||++++
T Consensus         1 ma~gknk~l~kgkkg~kkk~~D~f~~K~WY~VkAP~~F~~r~iGkT~v~~t~gtkia~d~L~GRv~EvsLaDL~~D~~~~   80 (255)
T 3u5c_B            1 MAVGKNKRLSKGKKGQKKRVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHS   80 (255)
T ss_dssp             -------------------CCCTTTTCCEEEEECCSSSSCSEEEEEECCCCCSSSCHHHHSCCCEEEEESHHHHSCSTTS
T ss_pred             CCccCCCcccccccCCcccccCCcccceeEEEeCccccCCcceeEEEcccccCcccCchhccCcEEEEEhhhccCChhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEEeeecCCeeeEeeecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccCCcCccchhhhhhh
Q 024879           81 YRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQ  160 (261)
Q Consensus        81 ~rK~kf~i~~V~G~~a~T~F~GmelT~DklrSlVrK~~t~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~SQ  160 (261)
                      |+||+|+|++|+|++|+|+|||||||+||||||||||||+|||++||+|+|||+|||||||||++++||.+|||||++||
T Consensus        81 ~rK~kl~i~~V~G~~~lT~F~GmdlT~DklrSlVrKw~s~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQ  160 (255)
T 3u5c_B           81 FRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSH  160 (255)
T ss_dssp             SCEEEEECCCEETTEECCEEEEECCCHHHHHHHCCTTSCEEECCEEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHH
T ss_pred             ceEEEEEEEeecCCEEEEEEcceeechhhhhhhccccceEEEEEEEEEecCCCEEEEEEEEEEcccccccccceechHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhCCHHHHHHHHhhhhHHHHHHHhccccccccceeEEEEEeeeCCccccchhhhhcCCc-cccC
Q 024879          161 IRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDV  239 (261)
Q Consensus       161 i~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~~~kl~e~~~~~-~~~~  239 (261)
                      +++||++|+|+|++++++++|+|||++||+|+|++||+++|++|||||+|||||||||+.|+||+++||||||++ ++++
T Consensus       161 i~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~IyPL~~V~IrKvKvLk~Pk~d~~kl~e~hg~~~~~~~  240 (255)
T 3u5c_B          161 IRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEK  240 (255)
T ss_dssp             HHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTTCCCEEEECCCEEEEECCCCCHHHHGGGCC-------
T ss_pred             HHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhccccccceEEEEEEEEeecCcccHhHHHhhhcCCCCCcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998 6789


Q ss_pred             ceeecCCCCCCC
Q 024879          240 GVKMERPADEPI  251 (261)
Q Consensus       240 g~~~~~~~~~~~  251 (261)
                      |++|+   +||+
T Consensus       241 g~~v~---~~~~  249 (255)
T 3u5c_B          241 GKKVT---GFKD  249 (255)
T ss_dssp             ------------
T ss_pred             ccccc---ccCC
Confidence            99998   6754

>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4

Probab=100.00  E-value=2.1e-105  Score=725.84  Aligned_cols=236  Identities=45%  Similarity=0.790  Sum_probs=210.4

Q ss_pred             CCcCCCcccc-c-CcCCCcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCcEEEEeccCCCCch-
Q 024879            1 MAVGKNKRIS-K-GKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEE-   77 (261)
Q Consensus         1 Ma~gknk~~~-k-gkKg~kkk~~D~f~kK~WY~V~AP~~F~~~~iG~T~v~kt~g~k~~~d~l~GRv~EvsLaDL~~d~-   77 (261)
                      |||||||+++ | ||||+|||++|||++|+||+|+||++|+.++||+||||||||++++||+|+||||||||+||+||+ 
T Consensus         1 mavgknk~l~~k~gkkg~kkk~~Dpf~~K~WY~VkAP~~F~~r~iGkTlv~rt~gtkia~d~L~GRv~EvsLaDL~~d~~   80 (265)
T 2xzm_4            1 MTQGKNPGLKAGGGKKGAKKRTIDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSN   80 (265)
T ss_dssp             --------------CCCSCCCCSCTTSSEEEEEEECCTTSCSSCCSEEEEECCCSSSCSTTSGGGCEEEEESCSSSSTTT
T ss_pred             CCccCCCccccccCcccccccccCCCcccceEEEECCcccCCceeEEEecccccCcccCchhcCCcEEEEEHHHhcCChh
Confidence            9999999996 4 799999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             hhceeEEEEEEeeecCCeeeEeeecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccC---CcCccch
Q 024879           78 EHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP---NQVKRTC  154 (261)
Q Consensus        78 ~~~~rK~kf~i~~V~G~~a~T~F~GmelT~DklrSlVrK~~t~Iea~vdVkT~DGy~lRvf~i~fT~kr~---~q~kkt~  154 (261)
                      +++|+||+|+|++|+|++|+|+|||||||+||||||||||||+|||++||+|+|||+|||||||||++++   ||++|||
T Consensus        81 ~~~~rK~kf~i~~V~G~nalT~F~GmdlTrDklrSlVrKw~s~Iea~vdVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~  160 (265)
T 2xzm_4           81 DKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTC  160 (265)
T ss_dssp             TSCCCEEEEEEEEECSSCEEEEEEEEECCHHHHHHSCCTTBCEEEEEEEEEETTTEEEEEEEEEEECCCSSCCSCSSCCB
T ss_pred             hhcceEEEEEEEeecCCEEEEEEeeeeccHHHhhhhhcccceeEEEEEEEEeCCCcEEEEEEEEEEecccccccccceee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999   9999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHhhhhHHHHHHHhccccccccceeEEEEEeeeCCccccchhhhhcCC
Q 024879          155 YAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD  234 (261)
Q Consensus       155 Ya~~SQi~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~~~kl~e~~~~  234 (261)
                      ||++||+++||++|+|+|++++++++|+|||++||+|+|++||+++|++|||||+|+|||||||+.|+||+++|||+||+
T Consensus       161 Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k~~k~IyPL~~V~IrKvKvLk~Pk~~~~~l~e~hg~  240 (265)
T 2xzm_4          161 YAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELYSH  240 (265)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHTTTCCEEEEEEEEEEEEECCCC-----------
T ss_pred             eccccchHHHHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHHHhhhccccceEEEEEEEEEecCchHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cc
Q 024879          235 YS  236 (261)
Q Consensus       235 ~~  236 (261)
                      ++
T Consensus       241 ~~  242 (265)
T 2xzm_4          241 EK  242 (265)
T ss_dssp             --
T ss_pred             cc
Confidence            63

>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2e-84  Score=569.86  Aligned_cols=193  Identities=34%  Similarity=0.514  Sum_probs=186.6

Q ss_pred             CcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCcEEEEeccCCCCchhhceeEEEEEEeeecCCe
Q 024879           16 GKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKN   95 (261)
Q Consensus        16 ~kkk~~D~f~kK~WY~V~AP~~F~~~~iG~T~v~kt~g~k~~~d~l~GRv~EvsLaDL~~d~~~~~rK~kf~i~~V~G~~   95 (261)
                      ..+|++|||++|+||+|+||++|+.++||+||||       .||+|+|||||+|||||+||++++|+||+|+|++|+|++
T Consensus         5 ~~~k~~D~~~~K~WY~V~AP~~F~~~~iG~T~~~-------~~~~l~GRv~EvsL~DL~~d~~~~~~K~kf~i~~V~G~~   77 (198)
T 3j20_A            5 RATTTRDKWKLKQWYIIYAPDFFGGVEVGLTPAD-------DPEKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQN   77 (198)
T ss_dssp             ----CCCCSSSEEEEEEECCSSSSCCCCCEEEEE-------SSSCCSSCEEEECCCSSTTHHHHHCCCEEEEEEEESSSE
T ss_pred             ccccccCCCccceeEEEECchhcCCceeEEEEcc-------CcccccCeEEEEEHHHhcCChhhheEEEEEEEEeccCCE
Confidence            3457899999999999999999999999999999       589999999999999999999999999999999999999


Q ss_pred             eeEeeecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccCCcCccchhhhhhhhHHHHHHHHHHHHHH
Q 024879           96 VLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQ  175 (261)
Q Consensus        96 a~T~F~GmelT~DklrSlVrK~~t~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~SQi~~IRk~m~eii~~~  175 (261)
                      |+|+|||||||+||||||||||||+|||++||+|+|||+|||||||||+++         |++||+++||++|+|+|+++
T Consensus        78 a~T~F~G~~lT~DklrSlVrk~~s~Iea~vdVkT~DGy~lRvf~i~fT~kr---------a~~sQ~~~IRk~m~eii~~~  148 (198)
T 3j20_A           78 AYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMRR---------IQTSQERAIRKIMQEIIYKK  148 (198)
T ss_dssp             EEEEEEEECCCHHHHHHHCCSSSCEEEEEEEEECTTSCEEEEEEEEEECSS---------CCCTHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcceeechhhhhhheecceeEEEEEEEEEecCCCEEEEEEEEEEecc---------ccchhhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999997         99999999999999999999


Q ss_pred             HhhCCHHHHHHHHhhhhHHHHHHHhccccccccceeEEEEEeeeCCccc
Q 024879          176 AASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFD  224 (261)
Q Consensus       176 ~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~  224 (261)
                      +++++|+|||++|++|+|++||+++|++|||||+|||||||||+.|+|-
T Consensus       149 ~~~~~l~e~V~~li~~~i~~eI~k~~k~IyPl~~V~IrKvKvlk~Pk~~  197 (198)
T 3j20_A          149 AEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQVI  197 (198)
T ss_dssp             HHHSCHHHHHHHHHSHHHHHHHHHHHHHHSCEEEEEEEEEEEEECSCSC
T ss_pred             hccCCHHHHHHHHcCChHHHHHHHhhCcccccceEEEEEEEEeeccCcc
Confidence            9999999999999999999999999999999999999999999999984

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=86.73  E-value=7.6  Score=32.02  Aligned_cols=88  Identities=15%  Similarity=0.171  Sum_probs=56.4

Q ss_pred             EEEEEeCCCcEEEEEEEEEeeccCCcCccchhhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHH--HhhhhHHHHHHHhc
Q 024879          124 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEK--FIAEIIGREIEKAT  201 (261)
Q Consensus       124 ~vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~SQi~~IRk~m~eii~~~~~~~~l~e~V~~--li~~~i~keI~k~~  201 (261)
                      ..++.|+||..|+|-++++-+=. + ..+-.|.-..-..+++......+...+...++++++..  -+...|...+...+
T Consensus        20 ~~~v~TkD~~~V~v~~~v~yrI~-d-p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~~R~~i~~~i~~~l~~~~   97 (188)
T 3bk6_A           20 VQETITKDNVPVRVNAVVYFRVV-D-PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEAT   97 (188)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEES-C-HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred             CceeEcCCCCEEEEEEEEEEEEC-C-HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHH
Confidence            45899999999999888655442 1 22223322233456788888999999999999999853  34444444444444


Q ss_pred             cccccccceeEEEEEe
Q 024879          202 LSIYPLQNVFIRKVKI  217 (261)
Q Consensus       202 k~IyPl~~V~IrKvKv  217 (261)
                      ..    .-+.|..|.+
T Consensus        98 ~~----~GI~v~~v~I  109 (188)
T 3bk6_A           98 DP----WGIKVTAVEI  109 (188)
T ss_dssp             GG----GTEEEEEEEE
T ss_pred             Hh----cCeEEEEEEE
Confidence            43    3455555544

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=80.10  E-value=10  Score=28.31  Aligned_cols=89  Identities=16%  Similarity=0.189  Sum_probs=54.5

Q ss_pred             EEEEeCCCcEEEEEEEEEeeccCCcCccchhhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHhhhhHHHHHHHhcccc
Q 024879          125 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSI  204 (261)
Q Consensus       125 vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~SQi~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~I  204 (261)
                      ..+.|+||-.|+|.+.+.-+=. + ..+-.|.-..-..+|+..+...+.+.+...++++++..  -+.|+.+|....+..
T Consensus        17 ~~v~T~D~~~v~v~~~v~~rI~-d-p~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~--R~~i~~~i~~~l~~~   92 (113)
T 2rpb_A           17 QEVICKDNVVVTVDAVVYYQVI-D-PVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSG--RDIINARLREELDKI   92 (113)
T ss_dssp             EEEECTTSCEEEECEEEEEEES-C-TTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHC--HHHHHHHHHHHHHHH
T ss_pred             ceeEeCCCCEEEEEEEEEEEEC-C-HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhC--HHHHHHHHHHHHHHH
Confidence            5889999999999887554432 1 12222222233457999999999999999999999862  244444444444433


Q ss_pred             ccccceeEEEEEe
Q 024879          205 YPLQNVFIRKVKI  217 (261)
Q Consensus       205 yPl~~V~IrKvKv  217 (261)
                      .--.-++|..+.+
T Consensus        93 ~~~~Gi~v~~v~I  105 (113)
T 2rpb_A           93 TDRWGVKITRVEI  105 (113)
T ss_dssp             HGGGTEECCCEEE
T ss_pred             HHhcCeEEEEEEE
Confidence            2222344444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00