Citrus Sinensis ID: 024898

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGSNKS
ccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEcccccccccccccEEEEEEccccccHHHHHHHcccccccccccccccccccccEEEEEEEEEcccccEEEEEEcccccccccccccccccEEEcccccccccccccccccEEEEEEEEEEccccccccEEEEEEEcccEEEEEcccEEEEcHHHHHHHHccccccccccccEEEEEEEEEccccccc
ccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHcHHcccccccccccEEEHHEEEEEEcEEEEEEcccccccccccEEEEccccccccHHHHHHHHccHHHcccccccccHHcccccHHHHEEEEcccccEEEEEEEEEccccccccEEEEEEEEEcccEEcccccccccccEEEEEEEEEEccccccccEEEEEEEcccEEEEEcccccccccHHHHHHHHccccccccccccEEEEEEEEcccccccc
MHQDAHEFLNFLLNELVDILEkeeaaksdpessspsektangptnglangvrkeplvTWVHKNFQGILTNETRCLRCETVTARDETFFDlsldieqnssiTSCLknfsstetlnaedkfFCDKCCSLQEAQKRmkikksphTLVIHLKRFKYIEQLGRYKKLSYRVVFPlelklsntaedadiEYSLFAVVVHvgsgpnhgHYVSLVKSHnhwlffddenvemidESAVQTFFGSaqeyssntdhGYILFYEslgagsnks
MHQDAHEFLNFLLNELVDILEKEEaaksdpessspsektangptnglangvrkEPLVTWVHKNfqgiltnetrclRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQkrmkikksphtlviHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYeslgagsnks
MHQDAHEFLNFLLNELVDILekeeaaksdpessspsekTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGSNKS
******EFLNFLLNELVDIL******************************VRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESL*******
MHQDAHEFLNFLLNELVDILE*****************************VRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFY***G******
MHQDAHEFLNFLLNELVDILEKE*******************PTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGSNKS
*HQDAHEFLNFLLNELVDILEKEEA*****************************PLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLG******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGSNKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query261 2.2.26 [Sep-21-2011]
Q8LAM0365 Ubiquitin carboxyl-termin yes no 0.977 0.698 0.867 1e-128
O24454371 Ubiquitin carboxyl-termin no no 0.977 0.687 0.873 1e-125
Q5RBQ4366 Ubiquitin carboxyl-termin no no 0.938 0.669 0.582 4e-83
P62069366 Ubiquitin carboxyl-termin yes no 0.938 0.669 0.582 4e-83
P62068366 Ubiquitin carboxyl-termin yes no 0.938 0.669 0.582 4e-83
A5WWB0370 Ubiquitin carboxyl-termin yes no 0.934 0.659 0.567 4e-81
A4FUN7371 Ubiquitin carboxyl-termin no no 0.942 0.663 0.574 2e-80
C0HB46372 Ubiquitin carboxyl-termin N/A no 0.946 0.663 0.566 3e-80
Q9D9M2370 Ubiquitin carboxyl-termin no no 0.938 0.662 0.562 3e-79
A5D9H7369 Ubiquitin carboxyl-termin no no 0.934 0.661 0.562 5e-79
>sp|Q8LAM0|UBP4_ARATH Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana GN=UBP4 PE=1 SV=2 Back     alignment and function desciption
 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/257 (86%), Positives = 237/257 (92%), Gaps = 2/257 (0%)

Query: 1   MHQDAHEFLNFLLNELVDILEKE-EAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTW 59
           MHQDAHEFLN+LLNELV+ILEKE +A K+D E+SS  EK AN     LANGV KEP+VTW
Sbjct: 107 MHQDAHEFLNYLLNELVEILEKETQATKADNETSSSPEKIANVLKAPLANGVHKEPIVTW 166

Query: 60  VHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKF 119
           VHK FQGILTNETRCLRCETVTARDETF DLSLDIEQNSSITSCLKNFSSTETL+AEDKF
Sbjct: 167 VHKIFQGILTNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLHAEDKF 226

Query: 120 FCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAE 179
           FCDKCCSLQEAQKRMKIKK PH LVIHLKRFKY+EQLGRYKKLSYRVVFPLELKLSNT +
Sbjct: 227 FCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLELKLSNTVD 286

Query: 180 D-ADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQE 238
           +  DIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDE+VE+I+ESAVQTFFGS+QE
Sbjct: 287 EYVDIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDESVEIIEESAVQTFFGSSQE 346

Query: 239 YSSNTDHGYILFYESLG 255
           YSSNTDHGYIL YESLG
Sbjct: 347 YSSNTDHGYILLYESLG 363
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Required for the correct development of pollen.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|O24454|UBP3_ARATH Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana GN=UBP3 PE=1 SV=1 Back     alignment and function description
>sp|Q5RBQ4|UBP46_PONAB Ubiquitin carboxyl-terminal hydrolase 46 OS=Pongo abelii GN=USP46 PE=2 SV=1 Back     alignment and function description
>sp|P62069|UBP46_MOUSE Ubiquitin carboxyl-terminal hydrolase 46 OS=Mus musculus GN=Usp46 PE=1 SV=1 Back     alignment and function description
>sp|P62068|UBP46_HUMAN Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo sapiens GN=USP46 PE=1 SV=1 Back     alignment and function description
>sp|A5WWB0|UBP46_DANRE Ubiquitin carboxyl-terminal hydrolase 46 OS=Danio rerio GN=usp46 PE=3 SV=2 Back     alignment and function description
>sp|A4FUN7|UBP12_DANRE Ubiquitin carboxyl-terminal hydrolase 12A OS=Danio rerio GN=usp12a PE=2 SV=1 Back     alignment and function description
>sp|C0HB46|UBP12_SALSA Ubiquitin carboxyl-terminal hydrolase 12 OS=Salmo salar GN=usp12 PE=2 SV=1 Back     alignment and function description
>sp|Q9D9M2|UBP12_MOUSE Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus musculus GN=Usp12 PE=2 SV=2 Back     alignment and function description
>sp|A5D9H7|UBP12_BOVIN Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos taurus GN=USP12 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query261
224081136 370 predicted protein [Populus trichocarpa] 1.0 0.705 0.931 1e-141
224093752 370 predicted protein [Populus trichocarpa] 1.0 0.705 0.927 1e-140
356540277 369 PREDICTED: ubiquitin carboxyl-terminal h 0.988 0.699 0.922 1e-140
255580900 369 Ubiquitin carboxyl-terminal hydrolase, p 0.996 0.704 0.931 1e-139
356512699 369 PREDICTED: ubiquitin carboxyl-terminal h 0.988 0.699 0.922 1e-139
356525469 369 PREDICTED: ubiquitin carboxyl-terminal h 0.988 0.699 0.918 1e-139
356525471 383 PREDICTED: ubiquitin carboxyl-terminal h 0.988 0.673 0.918 1e-138
225468498 369 PREDICTED: ubiquitin carboxyl-terminal h 0.977 0.691 0.933 1e-138
147810044 366 hypothetical protein VITISV_006756 [Viti 0.977 0.696 0.933 1e-138
449438831 369 PREDICTED: ubiquitin carboxyl-terminal h 0.996 0.704 0.912 1e-136
>gi|224081136|ref|XP_002306306.1| predicted protein [Populus trichocarpa] gi|222855755|gb|EEE93302.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/262 (93%), Positives = 250/262 (95%), Gaps = 1/262 (0%)

Query: 1   MHQDAHEFLNFLLNELVDILEKE-EAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTW 59
           MHQDAHEFLNFLLNELVDILEKE +A KSDPE+SSP EK ANGP +  ANGV KEPLVTW
Sbjct: 109 MHQDAHEFLNFLLNELVDILEKEAQAVKSDPETSSPPEKIANGPKHAQANGVSKEPLVTW 168

Query: 60  VHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKF 119
           VHKNFQGILTNETRCL+CETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKF
Sbjct: 169 VHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKF 228

Query: 120 FCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAE 179
           FCDKCCSLQEAQKRMKIKK PH LVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNT E
Sbjct: 229 FCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVE 288

Query: 180 DADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEY 239
           DADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEY
Sbjct: 289 DADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEY 348

Query: 240 SSNTDHGYILFYESLGAGSNKS 261
           SSNTDHGYILFYES+GA +NKS
Sbjct: 349 SSNTDHGYILFYESIGASNNKS 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224093752|ref|XP_002309976.1| predicted protein [Populus trichocarpa] gi|222852879|gb|EEE90426.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356540277|ref|XP_003538616.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Glycine max] Back     alignment and taxonomy information
>gi|255580900|ref|XP_002531269.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223529154|gb|EEF31133.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356512699|ref|XP_003525054.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356525469|ref|XP_003531347.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356525471|ref|XP_003531348.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|225468498|ref|XP_002270407.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147810044|emb|CAN67091.1| hypothetical protein VITISV_006756 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449438831|ref|XP_004137191.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Cucumis sativus] gi|449524412|ref|XP_004169217.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query261
TAIR|locus:2140074371 UBP3 "ubiquitin-specific prote 0.977 0.687 0.830 1.6e-111
UNIPROTKB|F1MZM8382 USP46 "Ubiquitin carboxyl-term 0.938 0.641 0.574 9.3e-75
UNIPROTKB|H7BZK6339 USP46 "Ubiquitin carboxyl-term 0.938 0.722 0.574 9.3e-75
UNIPROTKB|P62068366 USP46 "Ubiquitin carboxyl-term 0.938 0.669 0.574 9.3e-75
UNIPROTKB|I3LLE9354 USP46 "Uncharacterized protein 0.938 0.692 0.574 9.3e-75
UNIPROTKB|Q5RBQ4366 USP46 "Ubiquitin carboxyl-term 0.938 0.669 0.574 9.3e-75
MGI|MGI:1916977366 Usp46 "ubiquitin specific pept 0.938 0.669 0.574 9.3e-75
RGD|1564808366 Usp46 "ubiquitin specific pept 0.938 0.669 0.574 9.3e-75
UNIPROTKB|F1M625365 Usp46 "Ubiquitin carboxyl-term 0.938 0.671 0.574 9.3e-75
UNIPROTKB|E1C8J6366 USP46 "Ubiquitin carboxyl-term 0.938 0.669 0.570 3.1e-74
TAIR|locus:2140074 UBP3 "ubiquitin-specific protease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
 Identities = 216/260 (83%), Positives = 223/260 (85%)

Query:     1 MHQDAHEFLNFLLNELVDILXXXXXXXXXXXXXXXXXXT---ANGPTNGLANGV-RKEPL 56
             MHQDAHEFLN+LLNE+VDIL                      ANG     ANGV  KEP+
Sbjct:   109 MHQDAHEFLNYLLNEVVDILEKEAKATKTEHETSSSSSPEKIANGLKVPQANGVVHKEPI 168

Query:    57 VTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAE 116
             VTWVH  FQGILTNETRCLRCETVTARDETF DLSLDIEQNSSITSCLKNFSSTETL+AE
Sbjct:   169 VTWVHNIFQGILTNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLHAE 228

Query:   117 DKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSN 176
             DKFFCDKCCSLQEAQKRMKIKK PH LVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSN
Sbjct:   229 DKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSN 288

Query:   177 TAED-ADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGS 235
             T E  AD+EYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMI+ESAVQTFFGS
Sbjct:   289 TVEPYADVEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIEESAVQTFFGS 348

Query:   236 AQEYSSNTDHGYILFYESLG 255
             +QEYSSNTDHGYILFYESLG
Sbjct:   349 SQEYSSNTDHGYILFYESLG 368
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=ISS;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA
GO:0005634 "nucleus" evidence=IDA
UNIPROTKB|F1MZM8 USP46 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|H7BZK6 USP46 "Ubiquitin carboxyl-terminal hydrolase 46" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P62068 USP46 "Ubiquitin carboxyl-terminal hydrolase 46" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LLE9 USP46 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RBQ4 USP46 "Ubiquitin carboxyl-terminal hydrolase 46" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
MGI|MGI:1916977 Usp46 "ubiquitin specific peptidase 46" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1564808 Usp46 "ubiquitin specific peptidase 46" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M625 Usp46 "Ubiquitin carboxyl-terminal hydrolase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8J6 USP46 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P62068UBP46_HUMAN3, ., 4, ., 1, 9, ., 1, 20.58200.93860.6693yesno
P62069UBP46_MOUSE3, ., 4, ., 1, 9, ., 1, 20.58200.93860.6693yesno
A5WWB0UBP46_DANRE3, ., 4, ., 1, 9, ., 1, 20.56700.93480.6594yesno
Q8LAM0UBP4_ARATH3, ., 4, ., 1, 9, ., 1, 20.86770.97700.6986yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.976
3rd Layer3.4.19.120.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_V000147
hypothetical protein (370 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 1e-139
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 2e-65
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 9e-62
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 3e-45
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-44
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 2e-40
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 3e-38
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 7e-35
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 6e-33
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 9e-31
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 4e-28
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 2e-27
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 1e-20
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 4e-20
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 9e-19
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 4e-18
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 5e-18
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 1e-15
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 1e-14
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 1e-07
cd02670241 cd02670, Peptidase_C19N, A subfamily of Peptidase 2e-07
cd02672268 cd02672, Peptidase_C19P, A subfamily of Peptidase 6e-07
cd02665228 cd02665, Peptidase_C19I, A subfamily of Peptidase 3e-05
cd02666343 cd02666, Peptidase_C19J, A subfamily of Peptidase 5e-04
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  393 bits (1012), Expect = e-139
 Identities = 158/255 (61%), Positives = 184/255 (72%), Gaps = 21/255 (8%)

Query: 1   MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWV 60
           MHQDAHEFLNFLLNE+ +IL+ E  A+      +              N    EP  TWV
Sbjct: 64  MHQDAHEFLNFLLNEIAEILDAERKAEKANRKLN--------------NNNNAEPQPTWV 109

Query: 61  HKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFF 120
           H+ FQGILTNETRCL CETV++RDETF DLS+D+EQN+SITSCL+ FS+TETL   +KF+
Sbjct: 110 HEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFY 169

Query: 121 CDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNT--- 177
           CD+CCSLQEA+KRMKIKK P  L +HLKRFKY EQL RY KL YRVVFPLEL+L NT   
Sbjct: 170 CDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDD 229

Query: 178 AEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQ 237
           AE+ D  Y L AVVVH+G GPNHGHYVS+VKSH  WL FDDE VE IDE+AV+ FFG   
Sbjct: 230 AENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDETVEKIDENAVEEFFG--- 286

Query: 238 EYSSNTDHGYILFYE 252
             S N    Y+LFY+
Sbjct: 287 -DSPNQATAYVLFYQ 300

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 300
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 261
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
KOG1865 545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.96
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 99.96
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 99.96
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.94
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 99.93
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 99.77
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 99.68
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 98.5
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 98.33
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 91.59
PF14353128 CpXC: CpXC protein 91.11
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information 
Probab=100.00  E-value=1.2e-53  Score=360.82  Aligned_cols=234  Identities=67%  Similarity=1.108  Sum_probs=204.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898            1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV   80 (261)
Q Consensus         1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~   80 (261)
                      .||||+|||..|||.||++++..........              ............++|.++|+|++...++|..|+..
T Consensus        64 ~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~  129 (300)
T cd02663          64 MHQDAHEFLNFLLNEIAEILDAERKAEKANR--------------KLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETV  129 (300)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhcccccc--------------cccccccCCcCCCChhhhCceEEEeeEEeCCCCCC
Confidence            4999999999999999999987643322110              00111222345678999999999999999999999


Q ss_pred             cccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeE
Q 024898           81 TARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK  160 (261)
Q Consensus        81 ~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~  160 (261)
                      +.+.++|+.|+|++++..+|+++|+.|+.+|.++++++|.|++|+..+.+.++..|.++|++|+|||+||.++...++..
T Consensus       130 s~~~e~f~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~  209 (300)
T cd02663         130 SSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYI  209 (300)
T ss_pred             ccccceeEEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998766789


Q ss_pred             ecceEEeeCceeeCCCCCC---CCCceeEEcEEEeeeecCCCCeeEEEEEecCCcEEEeeCceeeEeChHHHHhhhcCCC
Q 024898          161 KLSYRVVFPLELKLSNTAE---DADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQ  237 (261)
Q Consensus       161 K~~~~v~~p~~l~l~~~~~---~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~  237 (261)
                      |+..+|.||..|+|..+.+   .+...|+|+|||+|.|.++++|||+||+|.+++||+|||+.|+++++++|.+..|+..
T Consensus       210 Ki~~~v~fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~~~~W~~fdD~~V~~~~~~~v~~~~~~~~  289 (300)
T cd02663         210 KLFYRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDETVEKIDENAVEEFFGDSP  289 (300)
T ss_pred             ecCceEecCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEECCCcEEEEcCCceEEcCHHHHHHhcCCCC
Confidence            9999999999999987642   3467999999999999878999999999999999999999999999999998776632


Q ss_pred             CCCCCCCceEEEEEE
Q 024898          238 EYSSNTDHGYILFYE  252 (261)
Q Consensus       238 ~~~~~~~~~yil~Y~  252 (261)
                          ...+||||||+
T Consensus       290 ----~~~~aYiLfY~  300 (300)
T cd02663         290 ----NQATAYVLFYQ  300 (300)
T ss_pred             ----CCCceEEEEeC
Confidence                37899999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF14353 CpXC: CpXC protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 9e-19
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 1e-18
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 1e-18
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 1e-18
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 2e-18
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 2e-18
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 2e-18
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 2e-18
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 1e-13
1nbf_A353 Crystal Structure Of A Ubp-Family Deubiquitinating 2e-13
2f1z_A522 Crystal Structure Of Hausp Length = 522 2e-13
1nb8_A353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 3e-13
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 1e-11
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 1e-11
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 1e-11
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 1e-10
1vjv_A415 Crystal Structure Of Ubiquitin Carboxyl-terminal Hy 1e-05
3ihp_A854 Covalent Ubiquitin-Usp5 Complex Length = 854 3e-04
2ayn_A404 Structure Of Usp14, A Proteasome-Associated Deubiqu 4e-04
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure 
Iteration: 1

 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 101/201 (50%), Gaps = 25/201 (12%)
Query: 64  FQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSIT--SCLKNFSSTETLNAEDKFFC 121
           FQG   +  +CL C   +   E F  LSL +   S  T   CL+ FS  E L   ++F+C
Sbjct: 212 FQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYC 271
Query: 122 DKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK-KLSYRVVFPLE-LKLSN--- 176
             C + +++ K+++I K P  L++HLKRF Y    GR+K KL   V FPLE L LS    
Sbjct: 272 SHCRARRDSLKKIEIWKLPPVLLVHLKRFSYD---GRWKQKLQTSVDFPLENLDLSQYVI 328
Query: 177 TAEDADIEYSLFAVVVHVGSGPNHGHYVSLVK--SHNHWLFFDDENVEMIDESAVQTFFG 234
             ++   +Y+LF+V  H G G + GHY +  K  +   W  FDD   E+ D S       
Sbjct: 329 GPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDH--EVSDISVSSVKSS 385
Query: 235 SAQEYSSNTDHGYILFYESLG 255
           +A          YILFY SLG
Sbjct: 386 AA----------YILFYTSLG 396
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415 Back     alignment and structure
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854 Back     alignment and structure
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 1e-79
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 8e-76
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 3e-74
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 7e-73
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 1e-65
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 4e-63
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 4e-61
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 1e-57
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 1e-29
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 2e-18
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 4e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 2e-04
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
 Score =  247 bits (631), Expect = 1e-79
 Identities = 72/266 (27%), Positives = 111/266 (41%), Gaps = 47/266 (17%)

Query: 1   MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWV 60
             QDAHEF  F++N++      +     +   ++  +                      V
Sbjct: 239 SQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCE------------------CIV 280

Query: 61  HKNFQGILTNETRCLRCETVTARD-ETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKF 119
           H  F+G L +   C  C+  +    + F DLSLDI+    +  CL +F   E L  +  +
Sbjct: 281 HTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLK-DFNY 339

Query: 120 FCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNT-- 177
            C +C S Q+A K++ I K P  LV+ LKRF+++   G  +KL   + FP  L + N   
Sbjct: 340 HCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLN-GSNRKLDDFIEFPTYLNMKNYCS 398

Query: 178 ----------AEDADIEYSLFAVVVHVGSGPNHGHYVSLVK-SHNHWLFFDDENVEMIDE 226
                      +  DI Y L  +V H G+  N GHY++  K S   W  F+D  V  I +
Sbjct: 399 TKEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKISGGQWFKFNDSMVSSISQ 457

Query: 227 SAVQTFFGSAQEYSSNTDHGYILFYE 252
             V              +  Y+LFY 
Sbjct: 458 EEVL------------KEQAYLLFYT 471
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Length = 374 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query261
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.7
3mp2_A211 Non-structural protein 3; papain-like protease, TG 82.59
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.1e-52  Score=363.74  Aligned_cols=238  Identities=29%  Similarity=0.516  Sum_probs=195.3

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCC----CCCCCccCCCcccceeeeeeEEEEEEEEeCC
Q 024898            1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTN----GLANGVRKEPLVTWVHKNFQGILTNETRCLR   76 (261)
Q Consensus         1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~   76 (261)
                      .||||+|||.+|||.||++++..........  .    ...+...    ...|........++|.++|+|++.+.++|..
T Consensus        97 ~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~--~----~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~~~C~~  170 (367)
T 2y6e_A           97 QQQDSQELLAFLLDGLHEDLNRVKKKPYLEL--K----DANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPE  170 (367)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTCSCSSCCCCCC--C----CCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEEECTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhhccCCcccc--c----cccCCchhHHHHHHHHHHHHhcCCccccccCcEEeeeEEeCC
Confidence            4999999999999999999865432211000  0    0000000    0001111122457899999999999999999


Q ss_pred             CCCccccccceEEEEeecCCC-------------------CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEe
Q 024898           77 CETVTARDETFFDLSLDIEQN-------------------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIK  137 (261)
Q Consensus        77 C~~~~~~~~~f~~l~l~i~~~-------------------~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~  137 (261)
                      |+.++.+.++|+.|+|++|..                   .+|+++|+.|+.+|.++++++|.|++|+..+.+.++..|.
T Consensus       171 C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~  250 (367)
T 2y6e_A          171 CAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLW  250 (367)
T ss_dssp             TCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEE
T ss_pred             CCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEEEEEe
Confidence            999999999999999999753                   4799999999999999999999999999999999999999


Q ss_pred             ecCCeEEEEEeeeeeecccceeEecceEEeeCc-eeeCCCCCCC---CCceeEEcEEEeeeecCCCCeeEEEEEec--CC
Q 024898          138 KSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPL-ELKLSNTAED---ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HN  211 (261)
Q Consensus       138 ~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~~p~-~l~l~~~~~~---~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~  211 (261)
                      ++|+||+|||+||.++..  ...|+...|.||. .|||.+++..   ....|+|+|||+|.|. .++|||+||+|.  ++
T Consensus       251 ~lP~vL~i~LkRF~~~~~--~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~~~~~~~~  327 (367)
T 2y6e_A          251 SLPKILVVHLKRFSYNRY--WRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNG  327 (367)
T ss_dssp             ECCSEEEEEEECEEECSS--CEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECS-SSSCEEEEEEECTTTC
T ss_pred             cCCcEEEEEEeCeeecCc--cceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCC-CCCCeeeEEEEcCCCC
Confidence            999999999999999754  5689999999997 6999998754   3679999999999998 899999999998  68


Q ss_pred             cEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEEeCCCCC
Q 024898          212 HWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGSN  259 (261)
Q Consensus       212 ~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~~~~~~  259 (261)
                      +||+|||+.|+++++++|.            ..+||||||+|++....
T Consensus       328 ~W~~fnD~~V~~v~~~~v~------------~~~aYiLfY~r~~~~~~  363 (367)
T 2y6e_A          328 KWYYFDDSNVSLASEDQIV------------TKAAYVLFYQRRDDEFY  363 (367)
T ss_dssp             CEEEEETTEEEECCGGGTS------------STTEEEEEEEECCC---
T ss_pred             eEEEECCCCceECCHHHcC------------CCCcEEEEEEEcCCCCC
Confidence            9999999999999999997            67999999999887643
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 261
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 9e-38
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 6e-32
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 1e-24
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 1e-23
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 5e-20
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 3e-09
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 9e-38
 Identities = 72/261 (27%), Positives = 116/261 (44%), Gaps = 23/261 (8%)

Query: 1   MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWV 60
             QD+ E L FL++ L + L K +  K   E ++          +       K+   + +
Sbjct: 104 SQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQK--HKQLNESII 161

Query: 61  HKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQ--NSSITSCLKNFSSTETLNAEDK 118
              FQG   +  +CL C   +   E F  LSL +      ++  CL+ FS  E L   ++
Sbjct: 162 VALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNR 221

Query: 119 FFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNT- 177
           F+C  C + +++ K+++I K P  L++HLKRF Y  +  + K  +        L LS   
Sbjct: 222 FYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGR-WKQKLQTSVDFPLENLDLSQYV 280

Query: 178 --AEDADIEYSLFAVVVHVGSGPNHGHYVSLVK--SHNHWLFFDDENVEMIDESAVQTFF 233
              ++   +Y+LF+V  H G   + GHY +  K  +   W  FDD  V  I  S+V+   
Sbjct: 281 IGPKNNLKKYNLFSVSNHYGG-LDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK--- 336

Query: 234 GSAQEYSSNTDHGYILFYESL 254
                    +   YILFY SL
Sbjct: 337 ---------SSAAYILFYTSL 348
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query261
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-47  Score=325.32  Aligned_cols=223  Identities=26%  Similarity=0.458  Sum_probs=194.4

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898            1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV   80 (261)
Q Consensus         1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~   80 (261)
                      .||||+||+..||+.|++++....                               ..++|.++|+|.+...++|..|+..
T Consensus        85 ~qqDa~Ef~~~ll~~l~~~~~~~~-------------------------------~~~~i~~lF~g~~~~~~~C~~C~~~  133 (347)
T d1nbfa_          85 MQHDVQELCRVLLDNVENKMKGTC-------------------------------VEGTIPKLFRGKMVSYIQCKEVDYR  133 (347)
T ss_dssp             SCBCHHHHHHHHHHHHHHHHTTST-------------------------------TTTHHHHHHCEEEEEEEEESSSCCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc-------------------------------ccccccceeceEEEEeEEeCCccce
Confidence            499999999999999999885431                               2356999999999999999999999


Q ss_pred             cccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeE
Q 024898           81 TARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK  160 (261)
Q Consensus        81 ~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~  160 (261)
                      +.+.++|..|+|+++...++.++|..++.+|.+++.+.+.|..| ....+.++..|.++|++|+|+|+||.++...+...
T Consensus       134 s~~~e~f~~l~L~i~~~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~  212 (347)
T d1nbfa_         134 SDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNI  212 (347)
T ss_dssp             EEEEEEESSEEEECTTCCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEE
T ss_pred             eeeeccccccccccccccchhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCChheEeeeeeeeccccCccc
Confidence            99999999999999999999999999999999988776656554 56678899999999999999999999999888999


Q ss_pred             ecceEEeeCceeeCCCCCCC----CCceeEEcEEEeeeecCCCCeeEEEEEec--CCcEEEeeCceeeEeChHHHHhh-h
Q 024898          161 KLSYRVVFPLELKLSNTAED----ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTF-F  233 (261)
Q Consensus       161 K~~~~v~~p~~l~l~~~~~~----~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~~~~v~~~-~  233 (261)
                      |+...|.||..|||.++...    ....|+|+|||+|.|. .++|||+||+|.  +++||+|||+.|+++++++|++. +
T Consensus       213 K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~  291 (347)
T d1nbfa_         213 KINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNY  291 (347)
T ss_dssp             ECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEEE-TTEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGS
T ss_pred             ccCceEeeeeeeccccccccccccCccceeeEEEEEecCC-CCCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhc
Confidence            99999999999999988643    3678999999999998 699999999996  67999999999999999999864 4


Q ss_pred             cCCCCC--CCCCCceEEEEEEEeCC
Q 024898          234 GSAQEY--SSNTDHGYILFYESLGA  256 (261)
Q Consensus       234 ~~~~~~--~~~~~~~yil~Y~r~~~  256 (261)
                      ||.+..  .....+||||||+|.+.
T Consensus       292 g~~~~~~~~~~~~~aYiLfY~r~~~  316 (347)
T d1nbfa_         292 GGHDDDLSVRHCTNAYMLVYIRESK  316 (347)
T ss_dssp             CCCCSCCSTTTTEEEEEEEEEEGGG
T ss_pred             CCCccccccCCCCCEEEEEEEecCc
Confidence            444321  12345899999999864
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure