Citrus Sinensis ID: 024911

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Protein Sequence
MDSAATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRVSSSEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSRAKEEPRDHDTFFESLLF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccHHHHHHccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccEEEEEEccccccccccccHHHcccEEEccccccccEEEcccccccccEEEEEccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHcc
Coil and Loop (DISEMBL)
mdsaatpenssisvgdddvdqgsqksksggggagggddfdedepeakrwkiegesegisapgsrtvreprvvvqttsdidilddgyrwrKYGQkvvkgnpnprsyykcthpgcpvrkhverASHDLRAVITTYegkhnhdvpaargsgsralpdnssnnnhnsnsnsnnngtlpvrasavahhpnnnsilnpvhnlrvsssegqapytlemlqgsgsfgfpgygNALRSYMNEGQQQDNVLSrakeeprdhdtffesllf
Flexible Loop (DISEMBL)
mdsaatpenssisvgdddvdqgsqksksggggagggddfdeDEPEAKRwkiegesegisapgsrtvreprvvvqttsdidilddgyrwRKYGQKvvkgnpnprsyykCTHPGCPVRKHVERASHDLRAVITtyegkhnhdvpaaRGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRVSSSEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSrakeeprdhdtffesllf
Low Complexity Region (SEG)
MDSAATPENSSISVGDDDVdqgsqksksggggagggddFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDnssnnnhnsnsnsnnnGTLPVRASAVAHHPNNNSILNPVHNLRVSSSEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSRAKEEPRDHDTFFESLLF
Disordered region (IsUnstruct)
**********************************************************************VVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYE***********************************************************************************FGFPGYG************************************
Disordered Region (DISOPRED)
************************************************************************VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNH*****************************************************************************************************************TFFESLLF
Disordered Region (DISEMBL)
*********************************************AKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRVSSSEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSRAKEEPRDHDTFFESLLF
Disordered Region (DISPRO)
*****************************************************************VREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKH*******************************************************************************************************************TFFE**LF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSAATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRVSSSEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSRAKEEPRDHDTFFESLLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	260	2.2.26 [Sep-21-2011]
Q8S8P5	519	Probable WRKY transcripti	yes	no	0.834	0.418	0.515	1e-60
Q9FG77	687	Probable WRKY transcripti	no	no	0.384	0.145	0.801	4e-44
Q93WV0	557	Probable WRKY transcripti	no	no	0.757	0.353	0.462	2e-42
Q9ZQ70	513	Probable WRKY transcripti	no	no	0.5	0.253	0.637	4e-42
Q9C5T3	309	Probable WRKY transcripti	no	no	0.438	0.368	0.633	6e-40
Q9XI90	514	Probable WRKY transcripti	no	no	0.434	0.219	0.666	6e-39
O65590	568	Probable WRKY transcripti	no	no	0.484	0.221	0.624	3e-38
O22921	393	Probable WRKY transcripti	no	no	0.503	0.333	0.605	3e-38
Q93WU7	423	Probable WRKY transcripti	no	no	0.488	0.300	0.575	2e-35
Q9SI37	487	WRKY transcription factor	no	no	0.507	0.271	0.485	4e-31

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/256 (51%), Positives = 162/256 (63%), Gaps = 39/256 (15%)

Query: 10  SSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREP 69
           +S SVGDD+ +QGS          G        EPEAKRWK + E+ G +  GS+TVREP
Sbjct: 296 TSDSVGDDEFEQGSSIVSRDEEDCGS-------EPEAKRWKGDNETNGGNGGGSKTVREP 348

Query: 70  RVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAV 129
           R+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT  GCPVRKHVERASHD+RAV
Sbjct: 349 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAV 408

Query: 130 ITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSI 189
           ITTYEGKHNHDVPAARGSG            + +N    ++ ++P+R +A+A H N    
Sbjct: 409 ITTYEGKHNHDVPAARGSG------------YATNRAPQDSSSVPIRPAAIAGHSN---- 452

Query: 190 LNPVHNLRVSSSEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNV------LSR 243
                     ++  QAPYTL+ML  + +   P +G A+ +  N    Q          SR
Sbjct: 453 ---------YTTSSQAPYTLQMLHNNNTNTGP-FGYAMNNNNNNSNLQTQQNFVGGGFSR 502

Query: 244 AKEEPRDHDTFFESLL 259
           AKEEP +  +FF+S +
Sbjct: 503 AKEEPNEETSFFDSFM 518

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  178 bits (451), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 81/101 (80%), Positives = 90/101 (89%), Gaps = 1/101 (0%)

Query: 45  EAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRS 104
           E+KR K+E  +  +S   +R +REPRVVVQTTSD+DILDDGYRWRKYGQKVVKGNPNPRS
Sbjct: 450 ESKRRKLEAFAAEMSG-STRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRS 508

Query: 105 YYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAAR 145
           YYKCT PGC VRKHVERASHDL++VITTYEGKHNHDVPAAR
Sbjct: 509 YYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAAR 549

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  172 bits (437), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/225 (46%), Positives = 131/225 (58%), Gaps = 28/225 (12%)

Query: 7   PENSSISVGDDDVDQGSQKSKSGGGGAGGG---DDFDEDEPEAKRWKIEGESEGISAPGS 63
           PE   IS  DD           GG  A      D+ D+D+P +KR ++EG  E    P  
Sbjct: 315 PEVPPISASDD-----------GGEAAASNRNKDEPDDDDPFSKRRRMEGAME--ITPLV 361

Query: 64  RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERAS 123
           + +REPRVVVQT S++DILDDGYRWRKYGQKVV+GNPNPRSYYKCT  GCPVRKHVERAS
Sbjct: 362 KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERAS 421

Query: 124 HDLRAVITTYEGKHNHDVPAARGSGS-----RALPDNSSNNNHNSNSNSNNNGTLPVRAS 178
           HD +AVITTYEGKH+HDVP ++ S +     R  PD +   + N     +++G  P  AS
Sbjct: 422 HDPKAVITTYEGKHDHDVPTSKSSSNHEIQPRFRPDETDTISLNLGVGISSDG--PNHAS 479

Query: 179 AVAHHPNNNSILNPVH----NLRVSSSEGQAPYTLEMLQGSGSFG 219
               H  N  ++N  H    N R   +   + Y   +  G   +G
Sbjct: 480 NEHQH-QNQQLVNQTHPNGVNFRFVHASPMSSYYASLNSGMNQYG 523

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1

 Score =  171 bits (434), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/135 (63%), Positives = 97/135 (71%), Gaps = 5/135 (3%)

Query: 41  EDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNP 100
           EDEP+ KR   E       A   RTV EPR++VQTTS++D+LDDGYRWRKYGQKVVKGNP
Sbjct: 373 EDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNP 432

Query: 101 NPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNNN 160
            PRSYYKCT P C VRKHVERA+ D +AV+TTYEGKHNHDVPAAR S  +  P    NN 
Sbjct: 433 YPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSHQLRP----NNQ 488

Query: 161 HNSNSNSNNNGTLPV 175
           HN+ S  N N   PV
Sbjct: 489 HNT-STVNFNHQQPV 502

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  164 bits (415), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 83/131 (63%), Positives = 90/131 (68%), Gaps = 17/131 (12%)

Query: 21  QGSQKSKSGGGGA------GGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQ 74
           Q +++S S    A      G G D  EDE EAKRWK E             V+EPRVVVQ
Sbjct: 177 QSTKRSSSTAIAAHQNSSNGDGKDIGEDETEAKRWKRE-----------ENVKEPRVVVQ 225

Query: 75  TTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYE 134
           TTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC VRKHVERA  D ++VITTYE
Sbjct: 226 TTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYE 285

Query: 135 GKHNHDVPAAR 145
           GKH H +P  R
Sbjct: 286 GKHKHQIPTPR 296

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  161 bits (407), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 88/114 (77%), Gaps = 1/114 (0%)

Query: 30  GGGAGGGDDFDEDEPEAKRWKIEGE-SEGISAPGSRTVREPRVVVQTTSDIDILDDGYRW 88
           G G     + DE+EP+ KR   E   SE   A   RTV EPR++VQTTS++D+LDDGYRW
Sbjct: 355 GNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRW 414

Query: 89  RKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVP 142
           RKYGQKVVKGNP PRSYYKCT PGC VRKHVERA+ D +AV+TTYEGKHNHD+P
Sbjct: 415 RKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 468

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1

 Score =  159 bits (401), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/133 (62%), Positives = 95/133 (71%), Gaps = 7/133 (5%)

Query: 38  DFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVK 97
           D + +E E+KR K+E  +   S   +R  REPRVVVQTTSDIDILDDGYRWRKYGQKVVK
Sbjct: 328 DGEVEESESKRRKLEAYATETSG-STRASREPRVVVQTTSDIDILDDGYRWRKYGQKVVK 386

Query: 98  GNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAAR-----GSGSR-A 151
           GNPNPRSYYKCT  GC V KHVERAS D ++V+TTY GKH H VPAAR     G+GS   
Sbjct: 387 GNPNPRSYYKCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVVPAARNSSHVGAGSSGT 446

Query: 152 LPDNSSNNNHNSN 164
           L  + +   HN N
Sbjct: 447 LQGSLATQTHNHN 459

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/137 (60%), Positives = 97/137 (70%), Gaps = 6/137 (4%)

Query: 8   ENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVR 67
           ENSSIS    D++Q S KS+ G               E KR K EGE EG+S   S+ V+
Sbjct: 259 ENSSISFDYSDLEQKSFKSEYGEIDEEEEQP------EMKRMKREGEDEGMSIEVSKGVK 312

Query: 68  EPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLR 127
           EPRVVVQT SDID+L DG+RWRKYGQKVVKGN NPRSYYKCT  GC V+K VER++ D R
Sbjct: 313 EPRVVVQTISDIDVLIDGFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADER 372

Query: 128 AVITTYEGKHNHDVPAA 144
           AV+TTYEG+HNHD+P A
Sbjct: 373 AVLTTYEGRHNHDIPTA 389

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU7|WRK58_ARATH Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=2

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 97/146 (66%), Gaps = 19/146 (13%)

Query: 44  PEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 103
           P +K  +I+G S        RTV EP+++VQT S++D+LDDGYRWRKYGQKVVKGNP+PR
Sbjct: 272 PASKIRRIDGVSTT-----HRTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVKGNPHPR 326

Query: 104 SYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARG------------SGSRA 151
           SYYKCT P C VRKHVERAS D +AVITTYEGKHNHDVPAAR             S    
Sbjct: 327 SYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAARNGTAAATAAAVGPSDHHR 386

Query: 152 LPDNSSNN--NHNSNSNSNNNGTLPV 175
           +   S NN   H S  N+NN G  PV
Sbjct: 387 MRSMSGNNMQQHMSFGNNNNTGQSPV 412

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI37|WRKY1_ARATH WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1

 Score =  135 bits (339), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/134 (48%), Positives = 89/134 (66%), Gaps = 2/134 (1%)

Query: 40  DEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGN 99
           D + P AKR K  G  E   +P  R+  + R+VV T +  DI++DGYRWRKYGQK VKG+
Sbjct: 266 DYNSPTAKRRKKGGNIE--LSPVERSTNDSRIVVHTQTLFDIVNDGYRWRKYGQKSVKGS 323

Query: 100 PNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNN 159
           P PRSYY+C+ PGCPV+KHVER+SHD + +ITTYEGKH+HD+P  R      + D+  ++
Sbjct: 324 PYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPGRVVTHNNMLDSEVDD 383

Query: 160 NHNSNSNSNNNGTL 173
                + +  + TL
Sbjct: 384 KEGDANKTPQSSTL 397

Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
183979108	603	DNA-binding protein [Vitis thunbergii]	0.965	0.416	0.711	2e-97
225434421	603	PREDICTED: probable WRKY transcription f	0.965	0.416	0.711	3e-97
356553124	575	PREDICTED: probable WRKY transcription f	0.919	0.415	0.698	4e-97
356500910	580	PREDICTED: probable WRKY transcription f	0.919	0.412	0.700	3e-94
151934197	329	WRKY39 [Glycine max]	0.919	0.726	0.700	3e-93
302399121	571	WRKY domain class transcription factor [	0.907	0.413	0.667	2e-91
224146673	603	predicted protein [Populus trichocarpa]	0.911	0.393	0.716	3e-89
259121373	599	WRKY transcription factor 4 [(Populus to	0.896	0.388	0.7	5e-88
449439187	576	PREDICTED: probable WRKY transcription f	0.923	0.416	0.662	9e-88
259121367	595	WRKY transcription factor 1 [(Populus to	0.884	0.386	0.705	1e-86

>gi|183979108|emb|CAP08303.1| DNA-binding protein [Vitis thunbergii]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 185/260 (71%), Positives = 208/260 (80%), Gaps = 9/260 (3%)

Query: 1   MDSAATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISA 60
           MDS ATPENSSIS+GDDD +Q SQKSKSGG      DDFDEDEPEAKRWK E E+EGISA
Sbjct: 351 MDSVATPENSSISMGDDDFEQSSQKSKSGG------DDFDEDEPEAKRWKKESENEGISA 404

Query: 61  PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVE 120
           PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+PGCPVRKHVE
Sbjct: 405 PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVE 464

Query: 121 RASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASAV 180
           RASHDLRAVITTYEGKHNHDVPAARGSGS ++       +  + + +NNN  + +R S +
Sbjct: 465 RASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLPLPDTTAAATTNNNMPMAIRPSTM 524

Query: 181 AHHPNNNSILNPVHNLRVSSSEGQ-APYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDN 239
            H P NNS  NP+ ++R  +SE Q AP+TLEMLQ    FGF  +GN++ +YMN+ Q QDN
Sbjct: 525 THLP-NNSTTNPLRHVRHPTSEAQAAPFTLEMLQSPDGFGFSNFGNSMATYMNQPQHQDN 583

Query: 240 VLSRAKEEPRDHDTFFESLL 259
           V SR KEEPRD D  FESLL
Sbjct: 584 VFSRTKEEPRD-DMLFESLL 602

Source: Vitis thunbergii

Species: Vitis thunbergii

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434421|ref|XP_002272040.1| PREDICTED: probable WRKY transcription factor 33-like [Vitis vinifera]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 185/260 (71%), Positives = 208/260 (80%), Gaps = 9/260 (3%)

Query: 1   MDSAATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISA 60
           MDS ATPENSSIS+GDDD +Q SQKSKSGG      DDFDEDEPEAKRWK E E+EGISA
Sbjct: 351 MDSVATPENSSISMGDDDFEQSSQKSKSGG------DDFDEDEPEAKRWKKESENEGISA 404

Query: 61  PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVE 120
           PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+PGCPVRKHVE
Sbjct: 405 PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVE 464

Query: 121 RASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASAV 180
           RASHDLRAVITTYEGKHNHDVPAARGSGS ++       +  + + +NNN  + +R S +
Sbjct: 465 RASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLPLPDTTAAATTNNNMPMAIRPSIM 524

Query: 181 AHHPNNNSILNPVHNLRVSSSEGQ-APYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDN 239
            H P NNS  NP+ ++R  +SE Q AP+TLEMLQ    FGF  +GN++ +YMN+ Q QDN
Sbjct: 525 THLP-NNSTTNPLRHVRHPTSEAQAAPFTLEMLQSPDGFGFSSFGNSMATYMNQPQHQDN 583

Query: 240 VLSRAKEEPRDHDTFFESLL 259
           V SR KEEPRD D  FESLL
Sbjct: 584 VFSRTKEEPRD-DMLFESLL 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553124|ref|XP_003544908.1| PREDICTED: probable WRKY transcription factor 33 [Glycine max]

 Score =  360 bits (923), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 185/265 (69%), Positives = 207/265 (78%), Gaps = 26/265 (9%)

Query: 1   MDSAATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISA 60
           MDSAATPENSSIS+GDDD +Q SQK KSGG      D++DEDEP+AKRWKIEGE+EG+SA
Sbjct: 330 MDSAATPENSSISIGDDDFEQSSQKCKSGG------DEYDEDEPDAKRWKIEGENEGMSA 383

Query: 61  PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVE 120
           PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVE
Sbjct: 384 PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVE 443

Query: 121 RASHDLRAVITTYEGKHNHDVPAARGSGS----RALPDNSSNNNHNSNSNSNNNGTLPVR 176
           RASHDLRAVITTYEGKHNHDVPAARGSGS    R +P+N+SN+         N     VR
Sbjct: 444 RASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPMPNNASNH--------TNTAATSVR 495

Query: 177 ASAVAHHPNNNSILNPVHNLRVSS-SEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQ 235
              V H  +N+     + N R  +  EGQ+P+TLEMLQ  GSFGF G+GN ++SY+N+ Q
Sbjct: 496 LLPVIHQSDNS-----LQNQRSQAPPEGQSPFTLEMLQSPGSFGFSGFGNPMQSYVNQQQ 550

Query: 236 QQDNVL-SRAKEEPRDHDTFFESLL 259
             DNV  SR KEEPRD D F ESLL
Sbjct: 551 LSDNVFSSRTKEEPRD-DMFLESLL 574

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500910|ref|XP_003519273.1| PREDICTED: probable WRKY transcription factor 33 [Glycine max]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 187/267 (70%), Positives = 207/267 (77%), Gaps = 28/267 (10%)

Query: 1   MDSAATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISA 60
           MDSAATPENSSIS+GDDD +Q SQK KSGG      D++DEDEP+AKRWKIEGE+EG+SA
Sbjct: 333 MDSAATPENSSISIGDDDFEQSSQKCKSGG------DEYDEDEPDAKRWKIEGENEGMSA 386

Query: 61  PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVE 120
           PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVE
Sbjct: 387 PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVE 446

Query: 121 RASHDLRAVITTYEGKHNHDVPAARGSGS----RALPDNSSNNNHNSNSNSNNNGTLPVR 176
           RASHDLRAVITTYEGKHNHDVPAARGSGS    R +P+N+        SN  N     + 
Sbjct: 447 RASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPMPNNA--------SNPTNTAATAIS 498

Query: 177 ASAVAHHPNNNSILNPVHNLRVSS-SEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQ 235
              V  H +N+       N R  +  EGQ+P+TLEMLQ  GSFGF G+GN ++SYMN+ Q
Sbjct: 499 PLQVIQHSDNSH-----QNQRSQAPPEGQSPFTLEMLQSPGSFGFSGFGNPMQSYMNQQQ 553

Query: 236 QQ--DNVL-SRAKEEPRDHDTFFESLL 259
           QQ  DNV  SRAKEEPRD D F ESLL
Sbjct: 554 QQLSDNVFSSRAKEEPRD-DMFLESLL 579

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|151934197|gb|ABS18436.1| WRKY39 [Glycine max]

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 187/267 (70%), Positives = 207/267 (77%), Gaps = 28/267 (10%)

Query: 1   MDSAATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISA 60
           MDSAATPENSSIS+GDDD +Q SQK KSGG      D++DEDEP+AKRWKIEGE+EG+SA
Sbjct: 82  MDSAATPENSSISIGDDDFEQSSQKCKSGG------DEYDEDEPDAKRWKIEGENEGMSA 135

Query: 61  PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVE 120
           PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVE
Sbjct: 136 PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVE 195

Query: 121 RASHDLRAVITTYEGKHNHDVPAARGSGS----RALPDNSSNNNHNSNSNSNNNGTLPVR 176
           RASHDLRAVITTYEGKHNHDVPAARGSGS    R +P+N+        SN  N     + 
Sbjct: 196 RASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPMPNNA--------SNPTNTAATAIS 247

Query: 177 ASAVAHHPNNNSILNPVHNLRVSS-SEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQ 235
              V  H +N+       N R  +  EGQ+P+TLEMLQ  GSFGF G+GN ++SYMN+ Q
Sbjct: 248 PLQVIQHSDNSH-----QNQRSQAPPEGQSPFTLEMLQSPGSFGFSGFGNPMQSYMNQQQ 302

Query: 236 QQ--DNVL-SRAKEEPRDHDTFFESLL 259
           QQ  DNV  SRAKEEPRD D F ESLL
Sbjct: 303 QQLSDNVFSSRAKEEPRD-DMFLESLL 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399121|gb|ADL36855.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 179/268 (66%), Positives = 204/268 (76%), Gaps = 32/268 (11%)

Query: 1   MDSAATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGE-SEGIS 59
           MDS  TPE+SSIS+GDDD +Q SQ+SKSGGG     ++FDEDEP AKRWK E + +EGIS
Sbjct: 326 MDSIGTPEHSSISIGDDDFEQSSQRSKSGGG-----EEFDEDEPNAKRWKNEADHNEGIS 380

Query: 60  APGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHV 119
           APG+RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+PGCPVRKHV
Sbjct: 381 APGNRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHV 440

Query: 120 ERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASA 179
           ERASHD+RAVITTYEGKHNHDVPAARGSGS A                  N  +P   + 
Sbjct: 441 ERASHDIRAVITTYEGKHNHDVPAARGSGSHAAV----------------NRPIPNNNNN 484

Query: 180 VA-------HHPNNNSILNPVHNLRVSSSEGQAPYTLEMLQGSGSFGFPGY-GNALRSYM 231
           VA       HH NN++  N V NLR  +SEGQAP++LEMLQ  GS+GF G+ GN++ SYM
Sbjct: 485 VASAMRPITHHTNNSANTNSVQNLRQPTSEGQAPFSLEMLQSPGSYGFVGFDGNSVGSYM 544

Query: 232 NEGQQQDNVLSRAKEEPRDHDTFFESLL 259
           N+ Q  D + S+AKEEPRD D FFESLL
Sbjct: 545 NQTQLSD-IFSKAKEEPRD-DAFFESLL 570

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146673|ref|XP_002326093.1| predicted protein [Populus trichocarpa] gi|222862968|gb|EEF00475.1| predicted protein [Populus trichocarpa]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 179/250 (71%), Positives = 207/250 (82%), Gaps = 13/250 (5%)

Query: 1   MDSA-ATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGIS 59
           MDS+ ATPENSSIS+GDDD D  SQ+S+SGGG     DDFDEDEPEAKRWK EG++EGIS
Sbjct: 357 MDSSVATPENSSISIGDDDFD--SQRSRSGGG-----DDFDEDEPEAKRWKREGDNEGIS 409

Query: 60  APGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHV 119
           APGS+ VREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+ GCPVRKHV
Sbjct: 410 APGSKAVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTYQGCPVRKHV 469

Query: 120 ERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASA 179
           ERASHDLRAVITTYEGKHNHDVPAARG+GSR+LP +++N N N+ +N++N+  + +R SA
Sbjct: 470 ERASHDLRAVITTYEGKHNHDVPAARGTGSRSLPGHNNNGN-NNGNNNSNHAVMAIRPSA 528

Query: 180 VAHHPNNNSILNPVHNLRV--SSSEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQ 237
           V +H  NNSI NPV + RV  ++SEG  P+TLEMLQ  GSFGF G+GN +  YMN+    
Sbjct: 529 V-NHVFNNSINNPVRDQRVPTTTSEGNMPFTLEMLQSPGSFGFSGFGNLMGPYMNQS-ST 586

Query: 238 DNVLSRAKEE 247
           D V SRAK E
Sbjct: 587 DEVFSRAKRE 596

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121373|gb|ACV92006.1| WRKY transcription factor 4 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  330 bits (845), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 175/250 (70%), Positives = 203/250 (81%), Gaps = 17/250 (6%)

Query: 1   MDSA-ATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGIS 59
           MDS+ ATPENSSIS+GDDD D  SQ+S+SGGG     DDF+EDEPEAKRWK EG++EGIS
Sbjct: 357 MDSSVATPENSSISIGDDDFD--SQRSRSGGG-----DDFEEDEPEAKRWKREGDNEGIS 409

Query: 60  APGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHV 119
           APG++ VREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+ GCPVRKHV
Sbjct: 410 APGNKAVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTYQGCPVRKHV 469

Query: 120 ERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASA 179
           ERASHDLRAVITTYEGKHNHDVPAARG+GSR+LP +++N N+NS      +  + +R SA
Sbjct: 470 ERASHDLRAVITTYEGKHNHDVPAARGAGSRSLPGHNNNGNNNS-----IHAAMSIRPSA 524

Query: 180 VAHHPNNNSILNPVHNLRV--SSSEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQ 237
           V +H  NNSI NP+ + RV  ++SEG  P+TLEMLQ  GSFGF G+GN +  YMN+    
Sbjct: 525 V-NHVFNNSIDNPIRDQRVPTTTSEGNMPFTLEMLQSPGSFGFSGFGNLMGPYMNQS-ST 582

Query: 238 DNVLSRAKEE 247
           D V SRAK E
Sbjct: 583 DEVFSRAKRE 592

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439187|ref|XP_004137368.1| PREDICTED: probable WRKY transcription factor 33-like [Cucumis sativus] gi|449520551|ref|XP_004167297.1| PREDICTED: probable WRKY transcription factor 33-like [Cucumis sativus] gi|324106110|gb|ADY18304.1| WRKYP2 [Cucumis sativus]

 Score =  329 bits (843), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 175/264 (66%), Positives = 198/264 (75%), Gaps = 24/264 (9%)

Query: 1   MDSAATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGES-EGIS 59
            D  ATPENSSIS+GD+D D+ SQKSKSGG      DDFDE+EPEAKRW+ EG++ EGIS
Sbjct: 331 FDGVATPENSSISIGDEDFDRSSQKSKSGG------DDFDEEEPEAKRWRREGDNNEGIS 384

Query: 60  APGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHV 119
           A GSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+PGCPVRKHV
Sbjct: 385 AAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHV 444

Query: 120 ERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTLPVR-AS 178
           ERASHDLRAVITTYEGKHNHDVP ARGSGS +L          S    NN     +R  S
Sbjct: 445 ERASHDLRAVITTYEGKHNHDVPPARGSGSHSL----------SRPFPNNEPPAAIRPLS 494

Query: 179 AVAHHPNNNSILNPVHNLRVS-SSEGQAPYTLEMLQGSGSFGFPGYGNA--LRSYMNEGQ 235
            V HH NN    +P   LR+  SS+ QA +T+EM+Q    F FP +GN+  + SYMN+ Q
Sbjct: 495 VVTHHSNNGG--HP-QGLRLQRSSDSQAAFTVEMVQNGNGFSFPEFGNSMGMGSYMNQTQ 551

Query: 236 QQDNVLSRAKEEPRDHDTFFESLL 259
             DN+ +RAKEEPRDHD F +SLL
Sbjct: 552 PNDNLFTRAKEEPRDHDMFIQSLL 575

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121367|gb|ACV92003.1| WRKY transcription factor 1 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 177/251 (70%), Positives = 198/251 (78%), Gaps = 21/251 (8%)

Query: 1   MDSA-ATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGIS 59
           MDS+ ATP+NSSIS+GDDD D  SQKSKS GG     DD DEDEP+AKRWK E E+EGIS
Sbjct: 355 MDSSVATPDNSSISMGDDDFD--SQKSKSVGG-----DDLDEDEPDAKRWKRERENEGIS 407

Query: 60  APGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHV 119
           APGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT  GCPVRKHV
Sbjct: 408 APGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFQGCPVRKHV 467

Query: 120 ERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASA 179
           ERASHDLRAVITTYEGKHNHDVPAARGSGSR+L D+S+N N+N+   +        R S 
Sbjct: 468 ERASHDLRAVITTYEGKHNHDVPAARGSGSRSLQDHSNNGNNNAAMAT--------RPST 519

Query: 180 VAHHPNNNSILNPVHNLR---VSSSEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQ 236
           V +H +NN + NP+ N R    ++SEG  P+TLEMLQ  GSFGF G+GN + SYMN+   
Sbjct: 520 V-NHVSNNPVNNPIRNQRAPPTATSEGDMPFTLEMLQSPGSFGFSGFGNLMGSYMNQS-S 577

Query: 237 QDNVLSRAKEE 247
            D VLSRAK E
Sbjct: 578 TDEVLSRAKRE 588

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.711	0.356	0.517	8.5e-49
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.403	0.152	0.792	1.6e-42
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.673	0.314	0.486	1.7e-41
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.430	0.217	0.690	3.7e-39
TAIR|locus:2063835	513	WRKY3 "WRKY DNA-binding protei	0.434	0.220	0.686	1.3e-38
TAIR|locus:2060805	393	WRKY25 "WRKY DNA-binding prote	0.403	0.267	0.695	2.4e-37
TAIR|locus:2102147	423	WRKY58 "WRKY DNA-binding prote	0.419	0.257	0.678	3e-37
TAIR|locus:2131503	568	WRKY34 "WRKY DNA-binding prote	0.403	0.184	0.716	3e-36
TAIR|locus:2169354	309	WRKY26 "WRKY DNA-binding prote	0.361	0.304	0.723	9.2e-36
TAIR|locus:2045049	487	ZAP1 "zinc-dependent activator	0.4	0.213	0.584	5.4e-31

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 103/199 (51%), Positives = 129/199 (64%)

Query:    43 EPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNP 102
             EPEAKRWK + E+ G +  GS+TVREPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNP
Sbjct:   322 EPEAKRWKGDNETNGGNGGGSKTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNP 381

Query:   103 RSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDXXXXXXXX 162
             RSYYKCT  GCPVRKHVERASHD+RAVITTYEGKHNHDVPAARGSG              
Sbjct:   382 RSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG------------YA 429

Query:   163 XXXXXXXXGTLPVRASAVAHHPNNNSILNPVHNLRV--SSSEGQAPYTLEMLQGSGSFGF 220
                      ++P+R +A+A H N  +     + L++  +++    P+   M   + +   
Sbjct:   430 TNRAPQDSSSVPIRPAAIAGHSNYTTSSQAPYTLQMLHNNNTNTGPFGYAMNNNNNNSNL 489

Query:   221 PGYGNALRSYMNEGQQQDN 239
                 N +    +  +++ N
Sbjct:   490 QTQQNFVGGGFSRAKEEPN 508

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 1.6e-42, P = 1.6e-42
 Identities = 84/106 (79%), Positives = 93/106 (87%)

Query:    42 DEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 101
             DE E+KR K+E  +  +S   +R +REPRVVVQTTSD+DILDDGYRWRKYGQKVVKGNPN
Sbjct:   447 DESESKRRKLEAFAAEMSG-STRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPN 505

Query:   102 PRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGS 147
             PRSYYKCT PGC VRKHVERASHDL++VITTYEGKHNHDVPAAR S
Sbjct:   506 PRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNS 551

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 92/189 (48%), Positives = 114/189 (60%)

Query:    40 DEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGN 99
             D+D+P +KR ++EG  E    P  + +REPRVVVQT S++DILDDGYRWRKYGQKVV+GN
Sbjct:   340 DDDDPFSKRRRMEGAME--ITPLVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGN 397

Query:   100 PNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRAL-----PD 154
             PNPRSYYKCT  GCPVRKHVERASHD +AVITTYEGKH+HDVP ++ S +  +     PD
Sbjct:   398 PNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSSSNHEIQPRFRPD 457

Query:   155 XXXXXXXXXXXXXXXXGTLPVRASAVAHHPNNNSILNPVH----NLRVSSSEGQAPYTLE 210
                             G  P  AS   H   N  ++N  H    N R   +   + Y   
Sbjct:   458 ETDTISLNLGVGISSDG--PNHASN-EHQHQNQQLVNQTHPNGVNFRFVHASPMSSYYAS 514

Query:   211 MLQGSGSFG 219
             +  G   +G
Sbjct:   515 LNSGMNQYG 523

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 78/113 (69%), Positives = 90/113 (79%)

Query:    40 DEDEPEAKRWKIEGE-SEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKG 98
             DE+EP+ KR   E   SE   A   RTV EPR++VQTTS++D+LDDGYRWRKYGQKVVKG
Sbjct:   365 DENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKG 424

Query:    99 NPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRA 151
             NP PRSYYKCT PGC VRKHVERA+ D +AV+TTYEGKHNHD+PAA+ S   A
Sbjct:   425 NPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPAAKSSSHAA 477

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 79/115 (68%), Positives = 91/115 (79%)

Query:    41 EDEPEAKRWKIEGE-SEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGN 99
             EDEP+ KR   E   SE + A   RTV EPR++VQTTS++D+LDDGYRWRKYGQKVVKGN
Sbjct:   373 EDEPDPKRRNTEVRVSEPV-ASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGN 431

Query:   100 PNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRALPD 154
             P PRSYYKCT P C VRKHVERA+ D +AV+TTYEGKHNHDVPAAR S  +  P+
Sbjct:   432 PYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSHQLRPN 486

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 73/105 (69%), Positives = 87/105 (82%)

Query:    40 DEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGN 99
             +E++PE KR K EGE EG+S   S+ V+EPRVVVQT SDID+L DG+RWRKYGQKVVKGN
Sbjct:   285 EEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISDIDVLIDGFRWRKYGQKVVKGN 344

Query:   100 PNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAA 144
              NPRSYYKCT  GC V+K VER++ D RAV+TTYEG+HNHD+P A
Sbjct:   345 TNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTA 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2102147 WRKY58 "WRKY DNA-binding protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 76/112 (67%), Positives = 90/112 (80%)

Query:    40 DEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGN 99
             DED+ +    KI    +G+S    RTV EP+++VQT S++D+LDDGYRWRKYGQKVVKGN
Sbjct:   265 DEDDEDLPASKIR-RIDGVSTT-HRTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVKGN 322

Query:   100 PNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRA 151
             P+PRSYYKCT P C VRKHVERAS D +AVITTYEGKHNHDVPAAR +G+ A
Sbjct:   323 PHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAAR-NGTAA 373

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 3.0e-36, P = 3.0e-36
 Identities = 76/106 (71%), Positives = 84/106 (79%)

Query:    42 DEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 101
             +E E+KR K+E  +   S   +R  REPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPN
Sbjct:   332 EESESKRRKLEAYATETSG-STRASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 390

Query:   102 PRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGS 147
             PRSYYKCT  GC V KHVERAS D ++V+TTY GKH H VPAAR S
Sbjct:   391 PRSYYKCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVVPAARNS 436

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

TAIR|locus:2169354 WRKY26 "WRKY DNA-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 76/105 (72%), Positives = 80/105 (76%)

Query:    41 EDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNP 100
             EDE EAKRWK E             V+EPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNP
Sbjct:   203 EDETEAKRWKRE-----------ENVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNP 251

Query:   101 NPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAAR 145
             NPRSYYKCT  GC VRKHVERA  D ++VITTYEGKH H +P  R
Sbjct:   252 NPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTPR 296

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

TAIR|locus:2045049 ZAP1 "zinc-dependent activator protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 62/106 (58%), Positives = 79/106 (74%)

Query:    40 DEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGN 99
             D + P AKR K  G  E   +P  R+  + R+VV T +  DI++DGYRWRKYGQK VKG+
Sbjct:   266 DYNSPTAKRRKKGGNIE--LSPVERSTNDSRIVVHTQTLFDIVNDGYRWRKYGQKSVKGS 323

Query:   100 PNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAAR 145
             P PRSYY+C+ PGCPV+KHVER+SHD + +ITTYEGKH+HD+P  R
Sbjct:   324 PYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPGR 369

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023994001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (533 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026919001	SubName- Full=Putative uncharacterized protein (Chromosome chr15 scaffold_40, whole genome shot [...] (375 aa)						•			0.800

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	260
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	6e-40
smart00774	59	smart00774, WRKY, DNA binding domain	4e-37

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  131 bits (333), Expect = 6e-40
 Identities = 42/59 (71%), Positives = 48/59 (81%)

Query: 82  LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHD 140
           LDDGY WRKYGQK VKG+P PRSYY+CT PGCPV+K VER+S D + V  TYEG+HNH 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  124 bits (315), Expect = 4e-37
 Identities = 37/59 (62%), Positives = 46/59 (77%), Gaps = 1/59 (1%)

Query: 82  LDDGYRWRKYGQKVVKGNPNPRSYYKCTH-PGCPVRKHVERASHDLRAVITTYEGKHNH 139
           LDDGY+WRKYGQKV+KG+P PRSYY+CT+  GCP +K V+R+  D   V  TYEG+H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	260
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	92.49
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	90.87

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=2.5e-33  Score=205.39  Aligned_cols=60  Identities=68%  Similarity=1.347  Sum_probs=52.6

Q ss_pred             CCCchhhhhcCcccccCCCCCccceeecCCCCCccchhhhhcCCCCeEEEEEecccCCCC
Q 024911           82 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDV  141 (260)
Q Consensus        82 ~dDGY~WRKYGQK~IKGn~~PRSYYRCT~~gCpakK~Vqr~~~D~~~~itTY~G~HnH~~  141 (260)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            589999999999999999999999999999999999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=6.1e-32  Score=198.61  Aligned_cols=58  Identities=64%  Similarity=1.261  Sum_probs=56.5

Q ss_pred             CCCchhhhhcCcccccCCCCCccceeecC-CCCCccchhhhhcCCCCeEEEEEecccCC
Q 024911           82 LDDGYRWRKYGQKVVKGNPNPRSYYKCTH-PGCPVRKHVERASHDLRAVITTYEGKHNH  139 (260)
Q Consensus        82 ~dDGY~WRKYGQK~IKGn~~PRSYYRCT~-~gCpakK~Vqr~~~D~~~~itTY~G~HnH  139 (260)
                      ++|||+|||||||.|||+++||+|||||+ ++|+|+|+|||+.+|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 99999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.49  E-value=0.044  Score=37.65  Aligned_cols=48  Identities=29%  Similarity=0.712  Sum_probs=24.6

Q ss_pred             CCCchhhhhcCcccccCCCCCccceeecCC---CCCccchhhhhcCCCCeEEEEEecccCC
Q 024911           82 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHP---GCPVRKHVERASHDLRAVITTYEGKHNH  139 (260)
Q Consensus        82 ~dDGY~WRKYGQK~IKGn~~PRSYYRCT~~---gCpakK~Vqr~~~D~~~~itTY~G~HnH  139 (260)
                      +-|||.-++....      ....|++|+..   +|+|+-.+.  ..+  ..++...++|||
T Consensus        12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~--~~~~~~~~~HnH   62 (62)
T PF04500_consen   12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGD--GRVVRTNGEHNH   62 (62)
T ss_dssp             EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----T--TEEEE-S---SS
T ss_pred             EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCC--CEEEECCCccCC
Confidence            3589887765544      34689999973   899988776  222  344455599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=90.87  E-value=0.12  Score=38.55  Aligned_cols=30  Identities=33%  Similarity=0.575  Sum_probs=25.2

Q ss_pred             CCCCccchhhhhcCCCCeEEEEEecccCCCC
Q 024911          111 PGCPVRKHVERASHDLRAVITTYEGKHNHDV  141 (260)
Q Consensus       111 ~gCpakK~Vqr~~~D~~~~itTY~G~HnH~~  141 (260)
                      .+|+|+=.|.+.. +..-+++.+..+|||++
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCC
Confidence            5999998888765 66777889999999986

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	260
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		1e-31
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		7e-28

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 66/71 (92%)
Query: 73  VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITT 132
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCT PGC VRKHVERA+ D +AV+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67
Query: 133 YEGKHNHDVPA 143
           YEGKHNHD+PA
Sbjct: 68  YEGKHNHDLPA 78

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score =  120 bits (301), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 64/73 (87%)
Query: 70  RVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAV 129
           R+VV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C+ PGCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 130 ITTYEGKHNHDVP 142
           ITTYEGKH+HD+P
Sbjct: 62  ITTYEGKHDHDMP 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	260
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	2e-52
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	6e-50

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  164 bits (416), Expect = 2e-52
 Identities = 59/77 (76%), Positives = 66/77 (85%)

Query: 67  REPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDL 126
                 VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCT PGC VRKHVERA+ D 
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 127 RAVITTYEGKHNHDVPA 143
           +AV+TTYEGKHNHD+PA
Sbjct: 62  KAVVTTYEGKHNHDLPA 78

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  157 bits (399), Expect = 6e-50
 Identities = 51/75 (68%), Positives = 64/75 (85%)

Query: 70  RVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAV 129
           R+VV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C+ PGCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 130 ITTYEGKHNHDVPAA 144
           ITTYEGKH+HD+P  
Sbjct: 62  ITTYEGKHDHDMPPG 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	260
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	84.33

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=5.4e-38  Score=239.67  Aligned_cols=76  Identities=67%  Similarity=1.298  Sum_probs=73.3

Q ss_pred             CceEEeecCCCCCCCCchhhhhcCcccccCCCCCccceeecCCCCCccchhhhhcCCCCeEEEEEecccCCCCCCC
Q 024911           69 PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAA  144 (260)
Q Consensus        69 prvvvqT~Sdidi~dDGY~WRKYGQK~IKGn~~PRSYYRCT~~gCpakK~Vqr~~~D~~~~itTY~G~HnH~~P~a  144 (260)
                      .||+|+|.+++++++|||+|||||||.|||++|||+|||||+++|+|+|+|||+.+|+.+++|||+|+|||+.|.+
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~   76 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG   76 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence            3799999999999999999999999999999999999999999999999999999999999999999999999863

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=7.4e-38  Score=239.99  Aligned_cols=75  Identities=79%  Similarity=1.322  Sum_probs=69.7

Q ss_pred             CceEEeecCCCCCCCCchhhhhcCcccccCCCCCccceeecCCCCCccchhhhhcCCCCeEEEEEecccCCCCCC
Q 024911           69 PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA  143 (260)
Q Consensus        69 prvvvqT~Sdidi~dDGY~WRKYGQK~IKGn~~PRSYYRCT~~gCpakK~Vqr~~~D~~~~itTY~G~HnH~~P~  143 (260)
                      .+|+|+|.+++++++|||+|||||||.|||++|||+|||||+++|+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            378999999999999999999999999999999999999999999999999999999999999999999999984

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=84.33  E-value=0.59  Score=34.58  Aligned_cols=49  Identities=18%  Similarity=0.455  Sum_probs=32.1

Q ss_pred             CCCCchhhhhcCcccccCCCCCccceeecC---CCCCccchhhhhcCCCCeEEEEEecccCCCCC
Q 024911           81 ILDDGYRWRKYGQKVVKGNPNPRSYYKCTH---PGCPVRKHVERASHDLRAVITTYEGKHNHDVP  142 (260)
Q Consensus        81 i~dDGY~WRKYGQK~IKGn~~PRSYYRCT~---~gCpakK~Vqr~~~D~~~~itTY~G~HnH~~P  142 (260)
                      ++-|||.-.+--+      ...+.|.+|+.   .+|.|+-....   +  .+  ...+.|||++.
T Consensus        23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~--~~--~~~~~HnH~p~   74 (87)
T 2rpr_A           23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H--RI--MVMRSHCHQPD   74 (87)
T ss_dssp             EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T--EE--EECSCCSSCCC
T ss_pred             EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C--CE--ECCCCcCCCCc
Confidence            5569998775321      12368999986   58999855432   1  23  35688999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	260
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	1e-40

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  132 bits (334), Expect = 1e-40
 Identities = 59/71 (83%), Positives = 66/71 (92%)

Query: 73  VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITT 132
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCT PGC VRKHVERA+ D +AV+TT
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 60

Query: 133 YEGKHNHDVPA 143
           YEGKHNHD+PA
Sbjct: 61  YEGKHNHDLPA 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	260
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.3e-37  Score=232.00  Aligned_cols=71  Identities=83%  Similarity=1.424  Sum_probs=68.6

Q ss_pred             EeecCCCCCCCCchhhhhcCcccccCCCCCccceeecCCCCCccchhhhhcCCCCeEEEEEecccCCCCCC
Q 024911           73 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA  143 (260)
Q Consensus        73 vqT~Sdidi~dDGY~WRKYGQK~IKGn~~PRSYYRCT~~gCpakK~Vqr~~~D~~~~itTY~G~HnH~~P~  143 (260)
                      |+|.+++++++|||+|||||||.|||+++||+||||++++|+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            57889999999999999999999999999999999999999999999999999999999999999999985