Citrus Sinensis ID: 024916

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
MGVAVGIICIVTFVTFSSLSVDARIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNFRV
ccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccccccccccccccccccccccccccccccHHHcccccccccEEEEEEcccccccccccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHcccEEEEEEEEEcccccccEEEEEcccccEEEEEEEEEcccccEEEEEEEcccccEEEccccccccEEEccccccccEEEEEEEccccEEEEccccccccccccEEEcccccc
cHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEccccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccEEEEEcccccEEEEEEEEccccccEEEEEEEcccccccccccccccccccccEEcccEEEEEEEEccccEEEEcccccccccEccEEccccccc
MGVAVGIICIVTFVTFsslsvdaripgvyggeawqSAHAtfyggndasgtmggacgygnlysqgygvnTAALSTALFnnglscgacfeikcandpqwchagspsifvtatnfcppnfaqpsdnggwcnpprphfdlamPMFLKMAEYRAGivpvsyrrvpcrkrggirftinGFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLsrnwgqnwqsnsVLVGQSLsfrvtgsdrrtstswnivpanwqfgqtftgknfrv
MGVAVGIICIVTFVTFSSLSVDARIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVpvsyrrvpcrkrGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSdrrtstswnivpanwqfgqtftgknfrv
MGVAVGIICIVTFVTFSSLSVDARIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNFRV
**VAVGIICIVTFVTFSSLSVDARIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFT******
***AVGIICIVTFVTFSSLSVDARIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNFRV
MGVAVGIICIVTFVTFSSLSVDARIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNFRV
MGVAVGIICIVTFVTFSSLSVDARIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFTGK*F**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGVAVGIICIVTFVTFSSLSVDARIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNFRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query260 2.2.26 [Sep-21-2011]
O48818257 Expansin-A4 OS=Arabidopsi yes no 0.988 1.0 0.857 1e-131
Q9M2S9260 Expansin-A16 OS=Arabidops no no 0.976 0.976 0.823 1e-123
Q852A1264 Expansin-A7 OS=Oryza sati yes no 0.911 0.897 0.866 1e-121
Q38865257 Expansin-A6 OS=Arabidopsi no no 0.969 0.980 0.837 1e-121
O80932262 Expansin-A3 OS=Arabidopsi no no 0.980 0.973 0.800 1e-119
Q9LZ99258 Expansin-A9 OS=Arabidopsi no no 0.992 1.0 0.751 1e-116
Q9C554250 Expansin-A1 OS=Arabidopsi no no 0.961 1.0 0.694 2e-97
Q40636251 Expansin-A2 OS=Oryza sati no no 0.934 0.968 0.690 1e-95
O80622253 Expansin-A15 OS=Arabidops no no 0.903 0.928 0.714 2e-95
Q0DHB7246 Expansin-A4 OS=Oryza sati no no 0.938 0.991 0.693 8e-95
>sp|O48818|EXPA4_ARATH Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1 Back     alignment and function desciption
 Score =  467 bits (1202), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/260 (85%), Positives = 241/260 (92%), Gaps = 3/260 (1%)

Query: 1   MGVAVGIICIVTFVTFSSLSVDARIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNL 60
           M + + I+   TFV FS    DARIPG+Y G AWQ+AHATFYGG+DASGTMGGACGYGNL
Sbjct: 1   MAIKLAIL-FTTFVLFSL--ADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNL 57

Query: 61  YSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQP 120
           YSQGYG NTAALSTALFNNG+SCGACFE+KCANDPQWCH+GSPSI +TATNFCPPN AQP
Sbjct: 58  YSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQP 117

Query: 121 SDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLV 180
           SDNGGWCNPPR HFDLAMP+FLK+A+YRAGIVPVSYRRVPCRKRGGIRFTING RYFNLV
Sbjct: 118 SDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLV 177

Query: 181 LITNVAGAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSW 240
           LITNVAGAGDIV+ASVKGSRTGWMSLSRNWGQNWQSN+VLVGQ+LSFRVTGSDRRTSTSW
Sbjct: 178 LITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSW 237

Query: 241 NIVPANWQFGQTFTGKNFRV 260
           N+VP+NWQFGQTF GKNFRV
Sbjct: 238 NMVPSNWQFGQTFVGKNFRV 257
Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M2S9|EXP16_ARATH Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1 Back     alignment and function description
>sp|Q852A1|EXPA7_ORYSJ Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1 Back     alignment and function description
>sp|Q38865|EXPA6_ARATH Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2 Back     alignment and function description
>sp|O80932|EXPA3_ARATH Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LZ99|EXPA9_ARATH Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1 Back     alignment and function description
>sp|Q9C554|EXPA1_ARATH Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1 Back     alignment and function description
>sp|Q40636|EXPA2_ORYSJ Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2 Back     alignment and function description
>sp|O80622|EXP15_ARATH Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2 Back     alignment and function description
>sp|Q0DHB7|EXPA4_ORYSJ Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
377824010258 expansin 1 [Betula platyphylla] 0.984 0.992 0.883 1e-132
13898655260 expansin [Prunus cerasus] 1.0 1.0 0.861 1e-131
255584757259 Alpha-expansin 4 precursor, putative [Ri 0.976 0.980 0.879 1e-131
356501065257 PREDICTED: expansin-A4-like [Glycine max 0.976 0.988 0.874 1e-131
225449479258 PREDICTED: expansin-A4 [Vitis vinifera] 0.984 0.992 0.868 1e-130
356551715260 PREDICTED: expansin-A4-like [Glycine max 0.988 0.988 0.868 1e-130
224109504258 hypothetical protein POPTRDRAFT_770354 [ 0.969 0.976 0.885 1e-130
358357123260 expansin 2 [Prunus salicina] 1.0 1.0 0.853 1e-130
29466643260 expansin [Prunus persica] 1.0 1.0 0.853 1e-130
345104159259 expansin [Gossypium barbadense var. bras 0.984 0.988 0.871 1e-130
>gi|377824010|gb|AFB77223.1| expansin 1 [Betula platyphylla] Back     alignment and taxonomy information
 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/257 (88%), Positives = 242/257 (94%), Gaps = 1/257 (0%)

Query: 4   AVGIICIVTFVTFSSLSVDARIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQ 63
           A+ + CIV+ +   +L VDA+IPGVY G AWQSAHATFYGGNDASGTMGGACGYGNLYSQ
Sbjct: 3   ALCVACIVSLMALLTL-VDAKIPGVYSGGAWQSAHATFYGGNDASGTMGGACGYGNLYSQ 61

Query: 64  GYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDN 123
           GYGVNTAALSTALFNNGLSCGACFEIKCAN+PQWCH+GSPSI +TATNFCPPN+A PSDN
Sbjct: 62  GYGVNTAALSTALFNNGLSCGACFEIKCANEPQWCHSGSPSILITATNFCPPNYALPSDN 121

Query: 124 GGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLIT 183
           GGWCNPPRPHFDLAMPMFLK+AEYRAGIVPVSYRRVPCRK+GGIRFTINGFRYFNLVLIT
Sbjct: 122 GGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLIT 181

Query: 184 NVAGAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIV 243
           NVAGAGDIVK SVKGS+T WMSLSRNWGQNWQSN VL GQSLSFRVTGSDRRTSTSWNIV
Sbjct: 182 NVAGAGDIVKVSVKGSKTEWMSLSRNWGQNWQSNVVLAGQSLSFRVTGSDRRTSTSWNIV 241

Query: 244 PANWQFGQTFTGKNFRV 260
           P++WQFGQTFTGKNFRV
Sbjct: 242 PSDWQFGQTFTGKNFRV 258

Source: Betula platyphylla

Species: Betula platyphylla

Genus: Betula

Family: Betulaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|13898655|gb|AAK48848.1|AF350939_1 expansin [Prunus cerasus] Back     alignment and taxonomy information
>gi|255584757|ref|XP_002533097.1| Alpha-expansin 4 precursor, putative [Ricinus communis] gi|223527109|gb|EEF29289.1| Alpha-expansin 4 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356501065|ref|XP_003519349.1| PREDICTED: expansin-A4-like [Glycine max] Back     alignment and taxonomy information
>gi|225449479|ref|XP_002283358.1| PREDICTED: expansin-A4 [Vitis vinifera] gi|296086221|emb|CBI31662.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356551715|ref|XP_003544219.1| PREDICTED: expansin-A4-like [Glycine max] Back     alignment and taxonomy information
>gi|224109504|ref|XP_002315218.1| hypothetical protein POPTRDRAFT_770354 [Populus trichocarpa] gi|222864258|gb|EEF01389.1| hypothetical protein POPTRDRAFT_770354 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358357123|gb|AEU08407.1| expansin 2 [Prunus salicina] Back     alignment and taxonomy information
>gi|29466643|dbj|BAC66787.1| expansin [Prunus persica] Back     alignment and taxonomy information
>gi|345104159|gb|AEN70901.1| expansin [Gossypium barbadense var. brasiliense] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
TAIR|locus:2043240257 EXPA4 "expansin A4" [Arabidops 0.988 1.0 0.857 8.7e-127
TAIR|locus:2053260257 EXPA6 "expansin A6" [Arabidops 0.976 0.988 0.835 7.2e-123
TAIR|locus:2099991260 EXPA16 "expansin A16" [Arabido 0.976 0.976 0.823 1.8e-119
TAIR|locus:2040686262 EXP3 [Arabidopsis thaliana (ta 0.980 0.973 0.800 1.6e-116
TAIR|locus:2180182258 EXPA9 "expansin A9" [Arabidops 0.992 1.0 0.751 9.7e-112
TAIR|locus:2007106275 EXPA1 "expansin A1" [Arabidops 0.938 0.887 0.701 2.6e-95
TAIR|locus:2200625259 EXPA10 "expansin A10" [Arabido 0.938 0.942 0.704 3.3e-95
TAIR|locus:2056670253 EXPA15 "expansin A15" [Arabido 0.903 0.928 0.714 6.8e-95
TAIR|locus:2161028255 EXPA14 "expansin A14" [Arabido 0.861 0.878 0.721 7e-93
TAIR|locus:2061918253 EXPA8 "expansin A8" [Arabidops 0.942 0.968 0.661 3.5e-91
TAIR|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1245 (443.3 bits), Expect = 8.7e-127, P = 8.7e-127
 Identities = 223/260 (85%), Positives = 241/260 (92%)

Query:     1 MGVAVGIICIVTFVTFSSLSVDARIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNL 60
             M + + I+   TFV FS    DARIPG+Y G AWQ+AHATFYGG+DASGTMGGACGYGNL
Sbjct:     1 MAIKLAIL-FTTFVLFSL--ADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNL 57

Query:    61 YSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQP 120
             YSQGYG NTAALSTALFNNG+SCGACFE+KCANDPQWCH+GSPSI +TATNFCPPN AQP
Sbjct:    58 YSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQP 117

Query:   121 SDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLV 180
             SDNGGWCNPPR HFDLAMP+FLK+A+YRAGIVPVSYRRVPCRKRGGIRFTING RYFNLV
Sbjct:   118 SDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLV 177

Query:   181 LITNVAGAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSW 240
             LITNVAGAGDIV+ASVKGSRTGWMSLSRNWGQNWQSN+VLVGQ+LSFRVTGSDRRTSTSW
Sbjct:   178 LITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSW 237

Query:   241 NIVPANWQFGQTFTGKNFRV 260
             N+VP+NWQFGQTF GKNFRV
Sbjct:   238 NMVPSNWQFGQTFVGKNFRV 257
GO:0005576 "extracellular region" evidence=ISM;IEA
GO:0009664 "plant-type cell wall organization" evidence=IEA
GO:0009826 "unidimensional cell growth" evidence=ISS;NAS
GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS
GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0006949 "syncytium formation" evidence=IEP;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2053260 EXPA6 "expansin A6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099991 EXPA16 "expansin A16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040686 EXP3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180182 EXPA9 "expansin A9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007106 EXPA1 "expansin A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200625 EXPA10 "expansin A10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056670 EXPA15 "expansin A15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161028 EXPA14 "expansin A14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061918 EXPA8 "expansin A8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80622EXP15_ARATHNo assigned EC number0.71420.90380.9288nono
Q38865EXPA6_ARATHNo assigned EC number0.83790.96920.9805nono
Q9M2S9EXP16_ARATHNo assigned EC number0.82350.97690.9769nono
Q9LZ99EXPA9_ARATHNo assigned EC number0.75190.99231.0nono
O48818EXPA4_ARATHNo assigned EC number0.85760.98841.0yesno
A2Y5R6EXPA4_ORYSINo assigned EC number0.69320.93840.9918N/Ano
O80932EXPA3_ARATHNo assigned EC number0.80070.98070.9732nono
Q9LDR9EXP10_ARATHNo assigned EC number0.70440.93840.9799nono
Q852A1EXPA7_ORYSJNo assigned EC number0.86610.91150.8977yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_X001844
hypothetical protein (258 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
PLN00050247 PLN00050, PLN00050, expansin A; Provisional 1e-122
PLN00193256 PLN00193, PLN00193, expansin-A; Provisional 1e-117
smart0083787 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like 5e-54
pfam0135782 pfam01357, Pollen_allerg_1, Pollen allergen 6e-32
pfam0333077 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like 9e-27
PLN03023247 PLN03023, PLN03023, Expansin-like B1; Provisional 4e-18
PLN03024125 PLN03024, PLN03024, Putative EG45-like domain cont 0.001
>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional Back     alignment and domain information 
 Score =  347 bits (890), Expect = e-122
 Identities = 168/228 (73%), Positives = 187/228 (82%), Gaps = 2/228 (0%)

Query: 31  GEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIK 90
           G  W  AHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFNNGLSCGACFEIK
Sbjct: 22  GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIK 81

Query: 91  CANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAG 150
           C ND  WC  GS  I +TATNFCPPN A P+++GGWCNPP+ HFDL+ P+F K+A+Y+AG
Sbjct: 82  CVNDNIWCLPGS--IIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAG 139

Query: 151 IVPVSYRRVPCRKRGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRNW 210
           IVPV YRRV CRK GGIRFTING  YFNLVLITNV GAGDIV  S+KGS++ W ++SRNW
Sbjct: 140 IVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNW 199

Query: 211 GQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNF 258
           GQNWQSNS L GQ+LSF+VT SD RT  S N  P+NW FGQT+TG  F
Sbjct: 200 GQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGMQF 247

Length = 247
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional Back     alignment and domain information
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen Back     alignment and domain information
>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional Back     alignment and domain information
>gnl|CDD|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 260
PLN00193256 expansin-A; Provisional 100.0
PLN00050247 expansin A; Provisional 100.0
PLN03023247 Expansin-like B1; Provisional 100.0
COG4305232 Endoglucanase C-terminal domain/subunit and relate 99.96
PLN03024125 Putative EG45-like domain containing protein 1; Pr 99.94
smart0083787 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b 99.94
PLN00115118 pollen allergen group 3; Provisional 99.88
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 99.87
PF0333078 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi 99.78
PF00967119 Barwin: Barwin family; InterPro: IPR001153 Barwin 98.97
PF07249119 Cerato-platanin: Cerato-platanin; InterPro: IPR010 98.02
TIGR00413208 rlpA rare lipoprotein A. This is a family of proka 97.94
COG0797233 RlpA Lipoproteins [Cell envelope biogenesis, outer 97.73
PRK10672361 rare lipoprotein A; Provisional 97.27
PF02015201 Glyco_hydro_45: Glycosyl hydrolase family 45; Inte 93.42
>PLN00193 expansin-A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.2e-70  Score=489.64  Aligned_cols=229  Identities=65%  Similarity=1.244  Sum_probs=216.8

Q ss_pred             cCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCcceEEEEEcC--CCCCccCCCCcEE
Q 024916           29 YGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCAN--DPQWCHAGSPSIF  106 (260)
Q Consensus        29 ~~~~~~~~g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~--~p~~C~~g~~sv~  106 (260)
                      |..++|+.++|||||++++.++++|||||+++..++++.++||+|+++|++|++||+||||+|..  +|+.|.++ ++|+
T Consensus        25 ~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g-~sV~  103 (256)
T PLN00193         25 FTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKG-ASVT  103 (256)
T ss_pred             cCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCC-CeEE
Confidence            66789999999999999988899999999998888899999999999999999999999999952  46689876 5999


Q ss_pred             EEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeeEEEEEEeeeccCCceEEEEccccceEEEEEEeec
Q 024916          107 VTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLITNVA  186 (260)
Q Consensus       107 V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~g~i~~~v~s~~yw~av~v~n~~  186 (260)
                      |+|||+||+++.+|+.|++||++++.|||||.+||.+||....|+++|+||||+|+++|+|+|++++++||++|+|.|++
T Consensus       104 Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~  183 (256)
T PLN00193        104 ITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVG  183 (256)
T ss_pred             EEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeC
Confidence            99999999999999999999998899999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceeEEEEEecCCceeecccCcCCeEEEcCCCCCcceEEEEEecCCCEEEEccccCCCCCCCcEEecc-ce
Q 024916          187 GAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFTGK-NF  258 (260)
Q Consensus       187 G~~~I~sVei~~~g~~W~~m~r~~g~~W~~~~~l~~~p~~vRiT~~~G~~v~~~~vip~~w~~G~~y~~~-q~  258 (260)
                      |+++|++||||+++++|++|+|+||++|+.+.+|.++||+||||+.+|+++++.||||++|++|++|++. ||
T Consensus       184 G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf  256 (256)
T PLN00193        184 GAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF  256 (256)
T ss_pred             CCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence            9999999999998778999999999999998888888999999999999999999999999999999996 87

>PLN00050 expansin A; Provisional Back     alignment and domain information
>PLN03023 Expansin-like B1; Provisional Back     alignment and domain information
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03024 Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>PLN00115 pollen allergen group 3; Provisional Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures Back     alignment and domain information
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds Back     alignment and domain information
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family Back     alignment and domain information
>TIGR00413 rlpA rare lipoprotein A Back     alignment and domain information
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10672 rare lipoprotein A; Provisional Back     alignment and domain information
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
2hcz_X245 Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans 1e-19
1n10_A241 Crystal Structure Of Phl P 1, A Major Timothy Grass 3e-18
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245 Back     alignment and structure 
Iteration: 1

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 31/241 (12%)
Query: 29  YGGEAWQSAHATFYGGNDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGAC 86
           Y G+ W +A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  CG+C
Sbjct: 15  YNGK-WLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSC 73
Query: 87  FEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAE 146
           +E++C   P+ C     ++++T  N+ P     P            HFDL+   F  +A+
Sbjct: 74  YEVRCKEKPE-CSGNPVTVYITDMNYEP---IAPY-----------HFDLSGKAFGSLAK 118
Query: 147 -------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLITNVAGAGDIVKAS 195
                     GI+ V +RRV C+   G +   +  +  N     VL+  VA  GDIV   
Sbjct: 119 PGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLME 178
Query: 196 VKGSRTG-WMSLSRNWGQNWQSNSVLVGQ-SLSFRVTGSDRRTSTSWNIVPANWQFGQTF 253
           ++   +  W  +  +WG  W+ ++    +   S R+T    +   + +++PANW+    +
Sbjct: 179 IQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVY 238
Query: 254 T 254
           T
Sbjct: 239 T 239
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 8e-72
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 1e-69
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 3e-58
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 2e-28
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 2e-27
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 6e-26
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 1e-24
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245 Back     alignment and structure
 Score =  219 bits (559), Expect = 8e-72
 Identities = 64/251 (25%), Positives = 110/251 (43%), Gaps = 32/251 (12%)

Query: 24  RIPGVYGGEAWQSAHATFYGGNDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGL 81
            I   Y G+ W +A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G 
Sbjct: 10  NITTNYNGK-WLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGK 68

Query: 82  SCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMF 141
            CG+C+E++C   P+       ++++T  N+ P                  HFDL+   F
Sbjct: 69  GCGSCYEVRCKEKPECSG-NPVTVYITDMNYEPIA--------------PYHFDLSGKAF 113

Query: 142 LKMAE-------YRAGIVPVSYRRVPCRKRGGIRFTIN----GFRYFNLVLITNVAGAGD 190
             +A+          GI+ V +RRV C+   G +   +        +  VL+  VA  GD
Sbjct: 114 GSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGD 173

Query: 191 IVKASVKGSRTG-WMSLSRNWGQNWQSNSVLV-GQSLSFRVTGSDRRTSTSWNIVPANWQ 248
           IV   ++   +  W  +  +WG  W+ ++        S R+T    +   + +++PANW+
Sbjct: 174 IVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWR 233

Query: 249 FGQTF-TGKNF 258
               + +   F
Sbjct: 234 PDAVYTSNVQF 244
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208 Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108 Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 100.0
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 100.0
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 100.0
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 99.97
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 99.95
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 99.93
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 99.9
1bw3_A125 Barwin, basic barley SEED protein; lectin; NMR {Ho 99.65
4avr_A95 PA4485; unknown function, GRAM-negative bacteria, 99.26
3sul_A122 Cerato-platanin-like protein; double PSI beta barr 97.93
2kqa_A129 Cerato-platanin; elicitor, secreted, toxin; NMR {C 97.88
3m3g_A120 EPL1 protein; fungal, plant defense, fungus, polys 97.82
3suj_A127 Cerato-platanin 1; double PSI beta barrel, unknown 97.76
3suk_A125 Cerato-platanin-like protein; double PSI beta barr 97.7
3sum_A136 Cerato-platanin-like protein; double PSI beta barr 97.58
2eng_A210 Endoglucanase V; cellulose degradation, hydrolase 95.25
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Back     alignment and structure
Probab=100.00  E-value=1.6e-63  Score=443.33  Aligned_cols=210  Identities=29%  Similarity=0.625  Sum_probs=187.5

Q ss_pred             CCCceEEEEEEeCCCCCCCC--CccccCCCcCCCCCCCCeEEEechhccCCCCCCcceEEEEEcCCCCCccCCCCcEEEE
Q 024916           31 GEAWQSAHATFYGGNDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVT  108 (260)
Q Consensus        31 ~~~~~~g~aT~Yg~~~~~g~--~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~  108 (260)
                      .++|+.|+||||+++++.++  ++|||||++++..+++.++||+|+++|++|+.||+||||+|.++| .|.++  +|+|+
T Consensus        16 ~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~~~g~~~aAls~~lf~~G~~CG~CyeV~c~~~~-~C~~~--~v~V~   92 (241)
T 1n10_A           16 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPE-ACSGE--PVVVH   92 (241)
T ss_dssp             CCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSST-TBCSC--CEEEE
T ss_pred             cCCceeeEEEEeCCCCCCCcCCCCeeCCCCCcCcCCCCcEEEEeCHHHccCcccCCCeEEEEeCCCC-ccCCC--CEEEE
Confidence            47899999999999987776  799999999887889999999999999999999999999998754 69865  89999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhc-------ccCCeeEEEEEEeeeccCC--ceEEEEc--cccce
Q 024916          109 ATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAE-------YRAGIVPVSYRRVPCRKRG--GIRFTIN--GFRYF  177 (260)
Q Consensus       109 VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-------~~~G~v~i~~r~V~C~~~g--~i~~~v~--s~~yw  177 (260)
                      |||+|+            |.+++.|||||+.||.+||+       .+.|+|+|+||||+|+++|  ||+|+++  +++||
T Consensus        93 VtD~C~------------C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~~i~f~v~~Gs~~~~  160 (241)
T 1n10_A           93 ITDDNE------------EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNY  160 (241)
T ss_dssp             EEEECS------------SCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTTCCCEEEECTTCBTTE
T ss_pred             EeEecC------------CCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeCCCCCCCceEEEEcCCCCcce
Confidence            999996            55567999999999999999       6899999999999999994  8999999  79999


Q ss_pred             EEEEEEeecCccceeEEEEEecC-CceeecccCcCCeEEEcCC--CCCcceEEEEEecCCCEEEEccccCCCCCCCcEEe
Q 024916          178 NLVLITNVAGAGDIVKASVKGSR-TGWMSLSRNWGQNWQSNSV--LVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFT  254 (260)
Q Consensus       178 ~av~v~n~~G~~~I~sVei~~~g-~~W~~m~r~~g~~W~~~~~--l~~~p~~vRiT~~~G~~v~~~~vip~~w~~G~~y~  254 (260)
                      ++|+|+|++|.++|++|||++++ +.|++|+|+|||+|+.+..  |.+ ||+||||+.+||+|+++||||++|++|++|+
T Consensus       161 ~~vlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~wG~~W~~~~~~~l~g-pls~RvT~~~G~~v~~~nViP~~w~~g~ty~  239 (241)
T 1n10_A          161 LALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYE  239 (241)
T ss_dssp             EEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCS-CEEEEEEESSSCEEEEEEEECSSCCSSEEEE
T ss_pred             EEEEEEecCCCCCEEEEEEEeCCCCCeEECccCcCcEEEeCCCCCCCC-CEEEEEEEeCCcEEEEccccCCCCCCCCEEe
Confidence            99999999998999999999987 5899999999999999875  777 9999999999999999999999999999999


Q ss_pred             cc
Q 024916          255 GK  256 (260)
Q Consensus       255 ~~  256 (260)
                      +.
T Consensus       240 ~~  241 (241)
T 1n10_A          240 SK  241 (241)
T ss_dssp             C-
T ss_pred             CC
Confidence            73
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Back     alignment and structure
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Back     alignment and structure
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa} Back     alignment and structure
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani} Back     alignment and structure
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens} Back     alignment and structure
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa} Back     alignment and structure
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 260
d1wc2a1180 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu 2e-49
d1n10a2143 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t 3e-47
d1n10a195 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T 1e-29
d1whoa_94 b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten 4e-24
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180 Back     information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score =  159 bits (402), Expect = 2e-49
 Identities = 35/179 (19%), Positives = 46/179 (25%), Gaps = 38/179 (21%)

Query: 26  PGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNL-----YSQGYGVNTAALSTALFNN- 79
           P  Y G     A  T Y  +       GACG G       +    G   AA S   F++ 
Sbjct: 8   PRRYNG--KSCASTTNYHDSH-----KGACGCGPASGDAQFGWNAGSFVAAASQMYFDSG 60

Query: 80  -----GLSCGACFEIKCANDPQWCHAGSP----SIFVTATNFCPPNFAQPSDNGGWCNPP 130
                G  CG C ++           G      S     TN CP        N  WCN  
Sbjct: 61  NKGWCGQHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNI----YPNQDWCNQG 116

Query: 131 RP-----------HFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN 178
                        H DL      ++          ++  V C               + 
Sbjct: 117 SQYGGHNKYGYELHLDL-ENGRSQVTGMGWNNPETTWEVVNCDSEHNHDHRTPSNSMYG 174
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143 Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95 Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
d1n10a2143 Pollen allergen PHL P 1 N-terminal domain {Timothy 100.0
d1wc2a1180 Endoglucanase (CMCase) {Blue mussel (Mytilus eduli 100.0
d1n10a195 PHL P 1 C-terminal domain {Timothy grass (Phleum p 99.95
d1whoa_94 PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1 99.92
d1bw3a_125 Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} 98.55
d2enga_210 Endoglucanase V (Eng V) {Humicola insolens [TaxId: 94.77
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=7.9e-37  Score=250.18  Aligned_cols=127  Identities=35%  Similarity=0.692  Sum_probs=105.2

Q ss_pred             ccCcccCCCCceEEEEEEeCCCCCCCC--CccccCCCcCCCCCCCCeEEEechhccCCCCCCcceEEEEEcCCCCCccCC
Q 024916           24 RIPGVYGGEAWQSAHATFYGGNDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAG  101 (260)
Q Consensus        24 ~~~~~~~~~~~~~g~aT~Yg~~~~~g~--~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~p~~C~~g  101 (260)
                      ...++|. ++|++|+||||+++++.++  .+|||||++++..+++.++||+|+++|++|..||+||||+|.+ ++.|..+
T Consensus         8 ~~~a~~~-~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~-~~~c~~~   85 (143)
T d1n10a2           8 NITATYG-DKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK-PEACSGE   85 (143)
T ss_dssp             CCCCBCC-CSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECS-STTBCSC
T ss_pred             CcccccC-CCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCC-CCcccCC
Confidence            3445674 8999999999998877553  4799999998878889999999999999999999999999987 4578754


Q ss_pred             CCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcc-------cCCeeEEEEEEeeeccCCc
Q 024916          102 SPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEY-------RAGIVPVSYRRVPCRKRGG  166 (260)
Q Consensus       102 ~~sv~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~-------~~G~v~i~~r~V~C~~~g~  166 (260)
                        +|+|+|||.||+           |+ +..|||||+.||.+||+.       +.|+|+|+||||+|+++|+
T Consensus        86 --sv~V~vtd~c~~-----------~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~gg  143 (143)
T d1n10a2          86 --PVVVHITDDNEE-----------PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEG  143 (143)
T ss_dssp             --CEEEEEEEECSS-----------CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTT
T ss_pred             --CEEEEEEecccC-----------CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCCC
Confidence              899999999997           33 568999999999999985       6799999999999999873
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]} Back     information, alignment and structure