Citrus Sinensis ID: 024934
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 260 | 2.2.26 [Sep-21-2011] | |||||||
| P42058 | 204 | Minor allergen Alt a 7 OS | N/A | no | 0.75 | 0.955 | 0.507 | 7e-47 | |
| A4W916 | 198 | Flavoprotein WrbA OS=Ente | yes | no | 0.738 | 0.969 | 0.482 | 3e-46 | |
| P25349 | 247 | Flavoprotein-like protein | yes | no | 0.757 | 0.797 | 0.485 | 8e-46 | |
| C4XGC2 | 203 | Flavoprotein WrbA OS=Desu | yes | no | 0.757 | 0.970 | 0.460 | 3e-45 | |
| B5XXP0 | 198 | Flavoprotein WrbA OS=Kleb | yes | no | 0.738 | 0.969 | 0.487 | 5e-45 | |
| Q0A961 | 199 | Flavoprotein WrbA OS=Alka | yes | no | 0.75 | 0.979 | 0.462 | 1e-44 | |
| A0LNQ8 | 204 | Flavoprotein WrbA OS=Synt | yes | no | 0.765 | 0.975 | 0.465 | 5e-44 | |
| B9M4V3 | 205 | Flavoprotein WrbA OS=Geob | yes | no | 0.769 | 0.975 | 0.448 | 9e-44 | |
| Q8Z7N9 | 198 | Flavoprotein WrbA OS=Salm | N/A | no | 0.742 | 0.974 | 0.464 | 1e-43 | |
| P42059 | 204 | Minor allergen Cla h 7 OS | N/A | no | 0.746 | 0.950 | 0.484 | 1e-43 |
| >sp|P42058|ALTA7_ALTAL Minor allergen Alt a 7 OS=Alternaria alternata GN=ALTA7 PE=1 SV=1 | Back alignment and function desciption |
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Score = 187 bits (475), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 129/199 (64%), Gaps = 4/199 (2%)
Query: 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPE 120
KI IV+YSMYGH++ +A KG+ G + L++V ETL +E LD M PP+D +P
Sbjct: 4 KIAIVYYSMYGHIKKMADAELKGIQEAGG-DAKLFQVAETLPQEVLDKMYAPPKDSSVPV 62
Query: 121 IS-AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGG 179
+ A L E DG LFG PTRYG AQ K F+D TG W++G GK AG FVSTGT GG
Sbjct: 63 LEDPAVLEEFDGILFGIPTRYGNFPAQFKTFWDKTGKQWQQGAFWGKYAGVFVSTGTLGG 122
Query: 180 GQETTAWTAITQLAHHGMLFVPIGYTFGAGMF-KMDSIRGGSPYGAGVF-AGDGTREPSE 237
GQETTA T+++ L HG ++VP+GY M +D + GGSP+GAG F AGDG+R+PSE
Sbjct: 123 GQETTAITSMSTLVDHGFIYVPLGYKTAFSMLANLDEVHGGSPWGAGTFSAGDGSRQPSE 182
Query: 238 TELALAEHQGKYMAAVVKK 256
EL +A+ QGK V K
Sbjct: 183 LELNIAQAQGKAFYEAVAK 201
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Alternaria alternata (taxid: 5599) |
| >sp|A4W916|WRBA_ENT38 Flavoprotein WrbA OS=Enterobacter sp. (strain 638) GN=wrbA PE=3 SV=1 | Back alignment and function description |
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| >sp|P25349|YCP4_YEAST Flavoprotein-like protein YCP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCP4 PE=1 SV=1 | Back alignment and function description |
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| >sp|C4XGC2|WRBA_DESMR Flavoprotein WrbA OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=wrbA PE=3 SV=1 | Back alignment and function description |
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| >sp|B5XXP0|WRBA_KLEP3 Flavoprotein WrbA OS=Klebsiella pneumoniae (strain 342) GN=wrbA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q0A961|WRBA_ALHEH Flavoprotein WrbA OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=wrbA PE=3 SV=1 | Back alignment and function description |
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| >sp|A0LNQ8|WRBA_SYNFM Flavoprotein WrbA OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=wrbA PE=3 SV=1 | Back alignment and function description |
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| >sp|B9M4V3|WRBA_GEOSF Flavoprotein WrbA OS=Geobacter sp. (strain FRC-32) GN=wrbA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8Z7N9|WRBA_SALTI Flavoprotein WrbA OS=Salmonella typhi GN=wrbA PE=3 SV=3 | Back alignment and function description |
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| >sp|P42059|CLAH7_DAVTA Minor allergen Cla h 7 OS=Davidiella tassiana GN=CLAH7 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 260 | ||||||
| 225430832 | 256 | PREDICTED: minor allergen Alt a 7-like [ | 0.984 | 1.0 | 0.773 | 1e-108 | |
| 224096940 | 254 | predicted protein [Populus trichocarpa] | 0.973 | 0.996 | 0.745 | 1e-105 | |
| 449451499 | 270 | PREDICTED: flavoprotein-like protein YCP | 0.996 | 0.959 | 0.741 | 1e-104 | |
| 255568257 | 257 | Minor allergen Alt a, putative [Ricinus | 0.984 | 0.996 | 0.720 | 1e-103 | |
| 224133864 | 253 | predicted protein [Populus trichocarpa] | 0.961 | 0.988 | 0.739 | 1e-103 | |
| 297802282 | 275 | minor allergen [Arabidopsis lyrata subsp | 0.996 | 0.941 | 0.704 | 1e-102 | |
| 15234512 | 273 | Quinone reductase family protein [Arabid | 0.996 | 0.948 | 0.698 | 1e-100 | |
| 21593010 | 273 | minor allergen [Arabidopsis thaliana] | 0.996 | 0.948 | 0.698 | 1e-100 | |
| 255556109 | 266 | Minor allergen Alt a, putative [Ricinus | 0.953 | 0.932 | 0.691 | 9e-99 | |
| 356538142 | 263 | PREDICTED: minor allergen Alt a 7-like [ | 0.976 | 0.965 | 0.706 | 1e-98 |
| >gi|225430832|ref|XP_002273030.1| PREDICTED: minor allergen Alt a 7-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/260 (77%), Positives = 212/260 (81%), Gaps = 4/260 (1%)
Query: 1 MGKGGGCVPSKKKNPRPPAIIADSEHDPLTPPAPIPISDQITHPNDTTTTSSQLREITKL 60
MGKGGGCVPSKKK P A E P APIP D I KL
Sbjct: 1 MGKGGGCVPSKKKLPSATA----DEGPPSARDAPIPAQDNSPEAPALDVDGVVTDPIAKL 56
Query: 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPE 120
KIF+VFYSMYGHVEGLA+RMKKGVDGVDG+EGLL+RVPETL E L+ MK PP+ DDIPE
Sbjct: 57 KIFVVFYSMYGHVEGLARRMKKGVDGVDGLEGLLFRVPETLPIEVLEQMKAPPKPDDIPE 116
Query: 121 ISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGG 180
ISAA+L ADG LFGFPTRYGCMAAQMKAFFDSTG LWKE +L GKPAGFFVSTGTQGGG
Sbjct: 117 ISAAELTTADGILFGFPTRYGCMAAQMKAFFDSTGQLWKEQQLAGKPAGFFVSTGTQGGG 176
Query: 181 QETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGDGTREPSETEL 240
QETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGDGTR+PSETEL
Sbjct: 177 QETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGDGTRQPSETEL 236
Query: 241 ALAEHQGKYMAAVVKKLCEA 260
ALAEHQGKYMAAVVK+L +A
Sbjct: 237 ALAEHQGKYMAAVVKRLAQA 256
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096940|ref|XP_002310794.1| predicted protein [Populus trichocarpa] gi|222853697|gb|EEE91244.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449451499|ref|XP_004143499.1| PREDICTED: flavoprotein-like protein YCP4-like [Cucumis sativus] gi|449517812|ref|XP_004165938.1| PREDICTED: flavoprotein-like protein YCP4-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255568257|ref|XP_002525103.1| Minor allergen Alt a, putative [Ricinus communis] gi|223535562|gb|EEF37230.1| Minor allergen Alt a, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224133864|ref|XP_002327699.1| predicted protein [Populus trichocarpa] gi|222836784|gb|EEE75177.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297802282|ref|XP_002869025.1| minor allergen [Arabidopsis lyrata subsp. lyrata] gi|297314861|gb|EFH45284.1| minor allergen [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|15234512|ref|NP_195393.1| Quinone reductase family protein [Arabidopsis thaliana] gi|2464905|emb|CAB16805.1| minor allergen [Arabidopsis thaliana] gi|7270624|emb|CAB80341.1| minor allergen [Arabidopsis thaliana] gi|332661297|gb|AEE86697.1| Quinone reductase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|21593010|gb|AAM64959.1| minor allergen [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|255556109|ref|XP_002519089.1| Minor allergen Alt a, putative [Ricinus communis] gi|223541752|gb|EEF43300.1| Minor allergen Alt a, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356538142|ref|XP_003537563.1| PREDICTED: minor allergen Alt a 7-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 260 | ||||||
| TAIR|locus:2115405 | 273 | AT4G36750 [Arabidopsis thalian | 0.984 | 0.937 | 0.632 | 1.7e-84 | |
| TAIR|locus:2131749 | 205 | AT4G27270 [Arabidopsis thalian | 0.753 | 0.956 | 0.578 | 1.3e-59 | |
| TAIR|locus:2178868 | 207 | AT5G58800 [Arabidopsis thalian | 0.757 | 0.951 | 0.497 | 1.7e-52 | |
| CGD|CAL0003651 | 288 | YCP4 [Candida albicans (taxid: | 0.757 | 0.684 | 0.43 | 3e-37 | |
| SGD|S000000597 | 247 | YCP4 "Protein of unknown funct | 0.769 | 0.809 | 0.423 | 6.3e-37 | |
| ASPGD|ASPL0000059021 | 204 | AN0297 [Emericella nidulans (t | 0.715 | 0.911 | 0.450 | 4.4e-36 | |
| UNIPROTKB|G4MTI8 | 204 | MGG_01569 "Minor allergen Alt | 0.715 | 0.911 | 0.442 | 4.4e-36 | |
| TIGR_CMR|GSU_0804 | 203 | GSU_0804 "trp repressor bindin | 0.757 | 0.970 | 0.425 | 4.4e-36 | |
| UNIPROTKB|P0A8G6 | 198 | wrbA [Escherichia coli K-12 (t | 0.742 | 0.974 | 0.393 | 4e-35 | |
| POMBASE|SPAC3C7.14c | 202 | obr1 "ubiquitinated histone-li | 0.738 | 0.950 | 0.422 | 5.8e-34 |
| TAIR|locus:2115405 AT4G36750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 174/275 (63%), Positives = 194/275 (70%)
Query: 1 MGKGGGCVPSKKKNPRP----PAIIADSEHDPLTPPAPIPISDQITHPNDTTT------- 49
MGKGGGCVPSKKK P P I D ++D P I DQ T D TT
Sbjct: 1 MGKGGGCVPSKKKKPATTGDGPGI--DDDNDATNAPIQID-DDQTTIDGDRTTATNTGGT 57
Query: 50 -----TSSQLREITKLKIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTRE 104
T++ + + LKIF+VFYSMYGHVE LAKRM E LYRVPETL++E
Sbjct: 58 TTPAITTTAAKISSPLKIFVVFYSMYGHVESLAKRMKKGVDSVEGVEATLYRVPETLSQE 117
Query: 105 ALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLV 164
++ MK P +D +IPEI+AA+L ADGFLFGFPTRYGCMAAQMKAFFDSTG LWKE L
Sbjct: 118 VVEQMKAPVKDLEIPEITAAELTAADGFLFGFPTRYGCMAAQMKAFFDSTGSLWKEQSLA 177
Query: 165 GKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGA 224
GKPAGFFVS AWTAITQL HHGMLFVPIGYTFGAGMFKMDSIRGGSPYGA
Sbjct: 178 GKPAGFFVSTGTQGGGQETTAWTAITQLVHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGA 237
Query: 225 GVFAGDGTREPSETELALAEHQGKYMAAVVKKLCE 259
GVFAGDG+RE +ETELALAEHQG YMAA+VK+L +
Sbjct: 238 GVFAGDGSREATETELALAEHQGNYMAAIVKRLAQ 272
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| TAIR|locus:2131749 AT4G27270 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2178868 AT5G58800 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| CGD|CAL0003651 YCP4 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
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| SGD|S000000597 YCP4 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000059021 AN0297 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G4MTI8 MGG_01569 "Minor allergen Alt a 7" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
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| TIGR_CMR|GSU_0804 GSU_0804 "trp repressor binding protein WrbA" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P0A8G6 wrbA [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
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| POMBASE|SPAC3C7.14c obr1 "ubiquitinated histone-like protein Uhp1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00024987001 | SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (243 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 260 | |||
| PRK03767 | 200 | PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase | 9e-77 | |
| TIGR01755 | 197 | TIGR01755, flav_wrbA, NAD(P)H:quinone oxidoreducta | 6e-64 | |
| COG0655 | 207 | COG0655, WrbA, Multimeric flavodoxin WrbA [General | 4e-41 | |
| pfam00258 | 142 | pfam00258, Flavodoxin_1, Flavodoxin | 9e-16 | |
| pfam03358 | 151 | pfam03358, FMN_red, NADPH-dependent FMN reductase | 7e-14 |
| >gnl|CDD|179647 PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional | Back alignment and domain information |
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Score = 230 bits (590), Expect = 9e-77
Identities = 92/200 (46%), Positives = 122/200 (61%), Gaps = 7/200 (3%)
Query: 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALD--HMKVPPRDDDI 118
K+ +++YSMYGH+E +A+ + +G V G E + RVPET+ E K D
Sbjct: 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKT---DQAA 59
Query: 119 PEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQG 178
P + +L + D +FG PTR+G MA QM+ F D TG LW +G LVGK F STGTQ
Sbjct: 60 PVATPDELADYDAIIFGTPTRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQH 119
Query: 179 GGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFA-GDGTREPSE 237
GGQETT + T L HHGM+ V + Y F G +D + GGSPYGA A GDG+R+PSE
Sbjct: 120 GGQETTITSTHTTLLHHGMVIVGLPYAF-QGQMDVDEVTGGSPYGATTIAGGDGSRQPSE 178
Query: 238 TELALAEHQGKYMAAVVKKL 257
ELA A +QG+++A + KL
Sbjct: 179 NELAGARYQGRHVAEIAAKL 198
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Length = 200 |
| >gnl|CDD|130816 TIGR01755, flav_wrbA, NAD(P)H:quinone oxidoreductase, type IV | Back alignment and domain information |
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| >gnl|CDD|223728 COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only] | Back alignment and domain information |
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| >gnl|CDD|215823 pfam00258, Flavodoxin_1, Flavodoxin | Back alignment and domain information |
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| >gnl|CDD|217511 pfam03358, FMN_red, NADPH-dependent FMN reductase | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 260 | |||
| KOG3135 | 203 | consensus 1,4-benzoquinone reductase-like; Trp rep | 100.0 | |
| TIGR01755 | 197 | flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. | 100.0 | |
| PRK03767 | 200 | NAD(P)H:quinone oxidoreductase; Provisional | 100.0 | |
| COG0655 | 207 | WrbA Multimeric flavodoxin WrbA [General function | 99.97 | |
| PRK05569 | 141 | flavodoxin; Provisional | 99.93 | |
| PRK06756 | 148 | flavodoxin; Provisional | 99.92 | |
| PRK05568 | 142 | flavodoxin; Provisional | 99.92 | |
| PF03358 | 152 | FMN_red: NADPH-dependent FMN reductase; InterPro: | 99.91 | |
| PRK11921 | 394 | metallo-beta-lactamase/flavodoxin domain-containin | 99.9 | |
| PRK06242 | 150 | flavodoxin; Provisional | 99.89 | |
| PRK06703 | 151 | flavodoxin; Provisional | 99.89 | |
| PRK05452 | 479 | anaerobic nitric oxide reductase flavorubredoxin; | 99.88 | |
| TIGR01753 | 140 | flav_short flavodoxin, short chain. Flavodoxins ar | 99.88 | |
| PRK07308 | 146 | flavodoxin; Validated | 99.87 | |
| PRK10569 | 191 | NAD(P)H-dependent FMN reductase; Provisional | 99.86 | |
| PRK09267 | 169 | flavodoxin FldA; Validated | 99.84 | |
| TIGR03566 | 174 | FMN_reduc_MsuE FMN reductase, MsuE subfamily. Memb | 99.84 | |
| TIGR03567 | 171 | FMN_reduc_SsuE FMN reductase, SsuE family. Members | 99.83 | |
| PRK00170 | 201 | azoreductase; Reviewed | 99.82 | |
| COG0426 | 388 | FpaA Uncharacterized flavoproteins [Energy product | 99.8 | |
| PRK09739 | 199 | hypothetical protein; Provisional | 99.79 | |
| PRK01355 | 199 | azoreductase; Reviewed | 99.78 | |
| TIGR02690 | 219 | resist_ArsH arsenical resistance protein ArsH. Mem | 99.76 | |
| PRK09271 | 160 | flavodoxin; Provisional | 99.75 | |
| PRK13556 | 208 | azoreductase; Provisional | 99.74 | |
| PRK12359 | 172 | flavodoxin FldB; Provisional | 99.72 | |
| TIGR01752 | 167 | flav_long flavodoxin, long chain. Flavodoxins are | 99.68 | |
| PRK07116 | 160 | flavodoxin; Provisional | 99.68 | |
| TIGR01754 | 140 | flav_RNR ribonucleotide reductase-associated flavo | 99.67 | |
| PF12682 | 156 | Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A. | 99.67 | |
| PRK11104 | 177 | hemG protoporphyrinogen oxidase; Provisional | 99.65 | |
| PRK06934 | 221 | flavodoxin; Provisional | 99.65 | |
| PF02525 | 199 | Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR0 | 99.63 | |
| PRK13555 | 208 | azoreductase; Provisional | 99.62 | |
| PF12641 | 160 | Flavodoxin_3: Flavodoxin domain | 99.6 | |
| PRK09004 | 146 | FMN-binding protein MioC; Provisional | 99.6 | |
| COG0716 | 151 | FldA Flavodoxins [Energy production and conversion | 99.57 | |
| PRK04930 | 184 | glutathione-regulated potassium-efflux system anci | 99.57 | |
| COG0431 | 184 | Predicted flavoprotein [General function predictio | 99.56 | |
| PF12724 | 143 | Flavodoxin_5: Flavodoxin domain | 99.54 | |
| PF00258 | 143 | Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This | 99.49 | |
| PRK08105 | 149 | flavodoxin; Provisional | 99.46 | |
| COG2249 | 189 | MdaB Putative NADPH-quinone reductase (modulator o | 99.44 | |
| COG4635 | 175 | HemG Flavodoxin [Energy production and conversion | 99.41 | |
| PRK00871 | 176 | glutathione-regulated potassium-efflux system anci | 99.39 | |
| COG1182 | 202 | AcpD Acyl carrier protein phosphodiesterase [Lipid | 99.25 | |
| PRK05723 | 151 | flavodoxin; Provisional | 99.23 | |
| KOG4530 | 199 | consensus Predicted flavoprotein [General function | 99.23 | |
| PRK10953 | 600 | cysJ sulfite reductase subunit alpha; Provisional | 99.08 | |
| TIGR01931 | 597 | cysJ sulfite reductase [NADPH] flavoprotein, alpha | 99.02 | |
| PRK03600 | 134 | nrdI ribonucleotide reductase stimulatory protein; | 98.66 | |
| TIGR00333 | 125 | nrdI ribonucleoside-diphosphate reductase 2, opero | 98.43 | |
| PRK02551 | 154 | flavoprotein NrdI; Provisional | 97.87 | |
| KOG1159 | 574 | consensus NADP-dependent flavoprotein reductase [E | 97.85 | |
| PF07972 | 122 | Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: | 96.91 | |
| PRK10310 | 94 | PTS system galactitol-specific transporter subunit | 96.08 | |
| TIGR00853 | 95 | pts-lac PTS system, lactose/cellobiose family IIB | 95.72 | |
| COG1780 | 141 | NrdI Protein involved in ribonucleotide reduction | 95.68 | |
| COG1440 | 102 | CelA Phosphotransferase system cellobiose-specific | 95.26 | |
| COG0369 | 587 | CysJ Sulfite reductase, alpha subunit (flavoprotei | 95.15 | |
| COG1445 | 122 | FrwB Phosphotransferase system fructose-specific c | 95.14 | |
| PRK10427 | 114 | putative PTS system fructose-like transporter subu | 94.86 | |
| PRK10499 | 106 | PTS system N,N'-diacetylchitobiose-specific transp | 94.44 | |
| PF02302 | 90 | PTS_IIB: PTS system, Lactose/Cellobiose specific I | 94.43 | |
| PRK09590 | 104 | celB cellobiose phosphotransferase system IIB comp | 93.71 | |
| cd05565 | 99 | PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of en | 93.42 | |
| COG3414 | 93 | SgaB Phosphotransferase system, galactitol-specifi | 92.13 | |
| cd05566 | 89 | PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB | 91.62 | |
| PF06283 | 217 | ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A. | 90.81 | |
| PRK13143 | 200 | hisH imidazole glycerol phosphate synthase subunit | 90.69 | |
| cd05564 | 96 | PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic | 88.99 | |
| PRK09548 | 602 | PTS system ascorbate-specific transporter subunits | 88.09 | |
| PRK11404 | 482 | putative PTS system transporter subunits IIBC; Pro | 86.71 | |
| cd05569 | 96 | PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of | 86.48 | |
| cd05567 | 87 | PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of | 86.16 | |
| TIGR00829 | 85 | FRU PTS system, fructose-specific, IIB component. | 86.15 | |
| PRK10712 | 563 | PTS system fructose-specific transporter subunits | 84.85 | |
| CHL00188 | 210 | hisH imidazole glycerol phosphate synthase subunit | 84.77 | |
| PRK06490 | 239 | glutamine amidotransferase; Provisional | 84.6 | |
| cd00133 | 84 | PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is | 84.38 | |
| PRK13146 | 209 | hisH imidazole glycerol phosphate synthase subunit | 84.25 | |
| KOG1160 | 601 | consensus Fe-S oxidoreductase [Energy production a | 83.55 | |
| PRK13608 | 391 | diacylglycerol glucosyltransferase; Provisional | 83.16 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.8 | |
| PRK08250 | 235 | glutamine amidotransferase; Provisional | 81.33 | |
| PRK14571 | 299 | D-alanyl-alanine synthetase A; Provisional | 80.23 |
| >KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=289.24 Aligned_cols=200 Identities=64% Similarity=1.066 Sum_probs=193.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|.||.||+||.+||...||++++++++++ |-+.++++++++++++.++.+..++++++++.++.+.|.+||+++||.|+
T Consensus 1 ~~kv~iv~ys~yghv~~lAe~~kkGie~a-~geA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PT 79 (203)
T KOG3135|consen 1 MPKVAIVIYSTYGHVAKLAEAEKKGIESA-GGEATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPT 79 (203)
T ss_pred CceEEEEEEEcccHHHHHHHHHHhhhhcc-CCeeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeecccc
Confidence 67999999999999999999999999994 44999999999999999999999998889999999999999999999999
Q ss_pred cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccc-cCCccccccccC
Q 024934 139 RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYT-FGAGMFKMDSIR 217 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~-~~~~~~~~~~~~ 217 (260)
.||++|+++|.|+|++..||..+.|.||++++|.|+|..+||||.++++.+..|.||||++||.||. ++++|++|+.++
T Consensus 80 RfG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGmifVPlGYkn~~a~m~~me~V~ 159 (203)
T KOG3135|consen 80 RFGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGMIFVPLGYKNFGAEMFEMEEVH 159 (203)
T ss_pred cccCcHHHHHHHHhccCchhhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcceEEEecccchhhhhhhhhhccc
Confidence 9999999999999999999999999999999999999989999999999999999999999999998 889999999999
Q ss_pred CCcccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 024934 218 GGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKLCE 259 (260)
Q Consensus 218 ~g~~~g~~~~~~-~g~~~p~e~~le~a~~~G~~la~~~~~l~~ 259 (260)
||++||++.++| ||+|.|++.||+.++.+|+.+++++++|++
T Consensus 160 Ggsp~GAGt~Ag~DGsR~ps~lEL~~a~~qGk~f~~~~kkl~~ 202 (203)
T KOG3135|consen 160 GGSPWGAGTFAGIDGSREPSELELQQAEIQGKYFAEIVKKLKG 202 (203)
T ss_pred CCCCCCCceeecCCCCCCCCHHHHHHHHHhhHHHHHHHHHhcC
Confidence 999999999999 999999999999999999999999999975
|
|
| >TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV | Back alignment and domain information |
|---|
| >PRK03767 NAD(P)H:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
| >COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only] | Back alignment and domain information |
|---|
| >PRK05569 flavodoxin; Provisional | Back alignment and domain information |
|---|
| >PRK06756 flavodoxin; Provisional | Back alignment and domain information |
|---|
| >PRK05568 flavodoxin; Provisional | Back alignment and domain information |
|---|
| >PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1 | Back alignment and domain information |
|---|
| >PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >PRK06242 flavodoxin; Provisional | Back alignment and domain information |
|---|
| >PRK06703 flavodoxin; Provisional | Back alignment and domain information |
|---|
| >PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional | Back alignment and domain information |
|---|
| >TIGR01753 flav_short flavodoxin, short chain | Back alignment and domain information |
|---|
| >PRK07308 flavodoxin; Validated | Back alignment and domain information |
|---|
| >PRK10569 NAD(P)H-dependent FMN reductase; Provisional | Back alignment and domain information |
|---|
| >PRK09267 flavodoxin FldA; Validated | Back alignment and domain information |
|---|
| >TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily | Back alignment and domain information |
|---|
| >TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family | Back alignment and domain information |
|---|
| >PRK00170 azoreductase; Reviewed | Back alignment and domain information |
|---|
| >COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK09739 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK01355 azoreductase; Reviewed | Back alignment and domain information |
|---|
| >TIGR02690 resist_ArsH arsenical resistance protein ArsH | Back alignment and domain information |
|---|
| >PRK09271 flavodoxin; Provisional | Back alignment and domain information |
|---|
| >PRK13556 azoreductase; Provisional | Back alignment and domain information |
|---|
| >PRK12359 flavodoxin FldB; Provisional | Back alignment and domain information |
|---|
| >TIGR01752 flav_long flavodoxin, long chain | Back alignment and domain information |
|---|
| >PRK07116 flavodoxin; Provisional | Back alignment and domain information |
|---|
| >TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative | Back alignment and domain information |
|---|
| >PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A | Back alignment and domain information |
|---|
| >PRK11104 hemG protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK06934 flavodoxin; Provisional | Back alignment and domain information |
|---|
| >PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold | Back alignment and domain information |
|---|
| >PRK13555 azoreductase; Provisional | Back alignment and domain information |
|---|
| >PF12641 Flavodoxin_3: Flavodoxin domain | Back alignment and domain information |
|---|
| >PRK09004 FMN-binding protein MioC; Provisional | Back alignment and domain information |
|---|
| >COG0716 FldA Flavodoxins [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional | Back alignment and domain information |
|---|
| >COG0431 Predicted flavoprotein [General function prediction only] | Back alignment and domain information |
|---|
| >PF12724 Flavodoxin_5: Flavodoxin domain | Back alignment and domain information |
|---|
| >PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase | Back alignment and domain information |
|---|
| >PRK08105 flavodoxin; Provisional | Back alignment and domain information |
|---|
| >COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only] | Back alignment and domain information |
|---|
| >COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional | Back alignment and domain information |
|---|
| >COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism] | Back alignment and domain information |
|---|
| >PRK05723 flavodoxin; Provisional | Back alignment and domain information |
|---|
| >KOG4530 consensus Predicted flavoprotein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10953 cysJ sulfite reductase subunit alpha; Provisional | Back alignment and domain information |
|---|
| >TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component | Back alignment and domain information |
|---|
| >PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI | Back alignment and domain information |
|---|
| >PRK02551 flavoprotein NrdI; Provisional | Back alignment and domain information |
|---|
| >KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis | Back alignment and domain information |
|---|
| >PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional | Back alignment and domain information |
|---|
| >TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component | Back alignment and domain information |
|---|
| >COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional | Back alignment and domain information |
|---|
| >PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional | Back alignment and domain information |
|---|
| >PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes | Back alignment and domain information |
|---|
| >PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed | Back alignment and domain information |
|---|
| >cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria | Back alignment and domain information |
|---|
| >COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) | Back alignment and domain information |
|---|
| >PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A | Back alignment and domain information |
|---|
| >PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
| >cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) | Back alignment and domain information |
|---|
| >PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional | Back alignment and domain information |
|---|
| >PRK11404 putative PTS system transporter subunits IIBC; Provisional | Back alignment and domain information |
|---|
| >cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) | Back alignment and domain information |
|---|
| >cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) | Back alignment and domain information |
|---|
| >TIGR00829 FRU PTS system, fructose-specific, IIB component | Back alignment and domain information |
|---|
| >PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional | Back alignment and domain information |
|---|
| >CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional | Back alignment and domain information |
|---|
| >PRK06490 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
| >cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) | Back alignment and domain information |
|---|
| >PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
| >KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK13608 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK08250 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
| >PRK14571 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 260 | ||||
| 3b6i_A | 198 | Wrba From Escherichia Coli, Native Structure Length | 2e-35 | ||
| 2zki_A | 199 | Crystal Structure Of Hypothetical Trp Repressor Bin | 9e-22 | ||
| 1zwk_A | 207 | Structure Of Wrba From Pseudomonas Aeruginosa Lengt | 9e-19 | ||
| 1ydg_A | 211 | Crystal Structure Of Trp Repressor Binding Protein | 3e-14 | ||
| 1yrh_A | 211 | Crystal Structure Of Trp Repressor Binding Protein | 1e-13 | ||
| 2a5l_A | 200 | The Crystal Structure Of The Trp Repressor Binding | 2e-12 |
| >pdb|3B6I|A Chain A, Wrba From Escherichia Coli, Native Structure Length = 198 | Back alignment and structure |
|
| >pdb|2ZKI|A Chain A, Crystal Structure Of Hypothetical Trp Repressor Binding Protein From Sul Folobus Tokodaii (St0872) Length = 199 | Back alignment and structure |
| >pdb|1ZWK|A Chain A, Structure Of Wrba From Pseudomonas Aeruginosa Length = 207 | Back alignment and structure |
| >pdb|1YDG|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba Length = 211 | Back alignment and structure |
| >pdb|1YRH|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba In Complex With Fmn Length = 211 | Back alignment and structure |
| >pdb|2A5L|A Chain A, The Crystal Structure Of The Trp Repressor Binding Protein Wrba From Pseudomonas Aeruginosa Length = 200 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* Length = 198 | Back alignment and structure |
|---|
Score = 256 bits (657), Expect = 2e-87
Identities = 89/198 (44%), Positives = 125/198 (63%), Gaps = 5/198 (2%)
Query: 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPE 120
K+ +++YSMYGH+E +A+ + +G VDG E ++ RVPET+ + + P
Sbjct: 3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKT--QTAPV 60
Query: 121 ISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGG 180
+ +L + D +FG PTR+G M+ QM+ F D TG LW G L GK A F STGT GGG
Sbjct: 61 ATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGT-GGG 119
Query: 181 QETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAG-DGTREPSETE 239
QE T + T LAHHGM+ VPIGY +F + +RGG+PYGA AG DG+R+PS+ E
Sbjct: 120 QEQTITSTWTTLAHHGMVIVPIGYAA-QELFDVSQVRGGTPYGATTIAGGDGSRQPSQEE 178
Query: 240 LALAEHQGKYMAAVVKKL 257
L++A +QG+Y+A + KL
Sbjct: 179 LSIARYQGEYVAGLAVKL 196
|
| >2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* Length = 200 | Back alignment and structure |
|---|
| >1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A* Length = 211 | Back alignment and structure |
|---|
| >2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} Length = 199 | Back alignment and structure |
|---|
| >3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens} Length = 193 | Back alignment and structure |
|---|
| >2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 Length = 188 | Back alignment and structure |
|---|
| >3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm} Length = 151 | Back alignment and structure |
|---|
| >1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A* Length = 242 | Back alignment and structure |
|---|
| >5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* Length = 138 | Back alignment and structure |
|---|
| >3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343} Length = 162 | Back alignment and structure |
|---|
| >3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301} Length = 161 | Back alignment and structure |
|---|
| >3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A Length = 159 | Back alignment and structure |
|---|
| >1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6 Length = 184 | Back alignment and structure |
|---|
| >2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 Length = 137 | Back alignment and structure |
|---|
| >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Length = 398 | Back alignment and structure |
|---|
| >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Length = 404 | Back alignment and structure |
|---|
| >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Length = 402 | Back alignment and structure |
|---|
| >1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR initiative, PSI, joint center for structural genomics, ELEC transport; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Length = 410 | Back alignment and structure |
|---|
| >2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* Length = 197 | Back alignment and structure |
|---|
| >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Length = 414 | Back alignment and structure |
|---|
| >3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} Length = 196 | Back alignment and structure |
|---|
| >1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A* Length = 169 | Back alignment and structure |
|---|
| >3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ... Length = 228 | Back alignment and structure |
|---|
| >3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A Length = 191 | Back alignment and structure |
|---|
| >2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A* Length = 164 | Back alignment and structure |
|---|
| >2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti} Length = 247 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 260 | |||
| 2a5l_A | 200 | Trp repressor binding protein WRBA; APC5760, PA094 | 100.0 | |
| 3b6i_A | 198 | Flavoprotein WRBA; flavoproteins, NADH:quinone oxi | 100.0 | |
| 2zki_A | 199 | 199AA long hypothetical Trp repressor binding prot | 99.97 | |
| 1ydg_A | 211 | Trp repressor binding protein WRBA; tetramer, stru | 99.97 | |
| 3d7n_A | 193 | Flavodoxin, WRBA-like protein; structural genomics | 99.97 | |
| 2ark_A | 188 | Flavodoxin; FMN, structural genomics, PSI, structu | 99.95 | |
| 3hly_A | 161 | Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein | 99.93 | |
| 3fni_A | 159 | Putative diflavin flavoprotein A 3; alpha-beta pro | 99.93 | |
| 1sqs_A | 242 | Conserved hypothetical protein; structural genomic | 99.93 | |
| 2q62_A | 247 | ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobi | 99.92 | |
| 2vzf_A | 197 | NADH-dependent FMN reductase; oxidoreductase; 2.50 | 99.92 | |
| 2fzv_A | 279 | Putative arsenical resistance protein; flavin bind | 99.91 | |
| 1rtt_A | 193 | Conserved hypothetical protein; protein structure | 99.91 | |
| 1rli_A | 184 | Trp repressor binding protein; structural genomics | 99.9 | |
| 5nul_A | 138 | Flavodoxin; electron transport, flavoprotein, FMN; | 99.9 | |
| 3k1y_A | 191 | Oxidoreductase; structural genomics, PSI-2, protei | 99.9 | |
| 3gfs_A | 174 | FMN-dependent NADPH-azoreductase; flavoproteins, q | 99.9 | |
| 3f6r_A | 148 | Flavodoxin; FMN binding, oxidized, electron transp | 99.9 | |
| 3fvw_A | 192 | Putative NAD(P)H-dependent FMN reductase; Q8DWD8_s | 99.89 | |
| 2q9u_A | 414 | A-type flavoprotein; flavodoxin like, beta lactama | 99.89 | |
| 4hs4_A | 199 | Chromate reductase; triple-layered, A/B/A structur | 99.88 | |
| 2fz5_A | 137 | Flavodoxin; alpha/beta doubly-wound topology, non- | 99.88 | |
| 2hpv_A | 208 | FMN-dependent NADH-azoreductase; structural genomi | 99.88 | |
| 1t0i_A | 191 | YLR011WP; FMN binding protein, flavodoxin, azoredu | 99.87 | |
| 1t5b_A | 201 | Acyl carrier protein phosphodiesterase; structural | 99.87 | |
| 1f4p_A | 147 | Flavodoxin; electron transport, flavoprotein, FMN, | 99.87 | |
| 3svl_A | 193 | Protein YIEF; E. coli CHRR enzyme, chromate biorem | 99.87 | |
| 2ohh_A | 404 | Type A flavoprotein FPRA; beta-lactamase like doma | 99.86 | |
| 3u7r_A | 190 | NADPH-dependent FMN reductase; alpha/beta twisted | 99.86 | |
| 3s2y_A | 199 | Chromate reductase; uranium reductase, oxidoreduct | 99.76 | |
| 4dik_A | 410 | Flavoprotein; TM0755, electron transport, DI-iron | 99.85 | |
| 3lcm_A | 196 | SMU.1420, putative oxidoreductase; NADPH:quinone o | 99.84 | |
| 1d4a_A | 273 | DT-diaphorase, quinone reductase; flavoprotein, ro | 99.84 | |
| 3r6w_A | 212 | FMN-dependent NADH-azoreductase 1; nitrofurazone, | 99.83 | |
| 1czn_A | 169 | Flavodoxin; FMN binding, redox potential, electron | 99.83 | |
| 1e5d_A | 402 | Rubredoxin\:oxygen oxidoreductase; oxygenreductase | 99.83 | |
| 1obo_A | 169 | Flavodoxin; electron transfer, flavoprotein, elect | 99.83 | |
| 1ycg_A | 398 | Nitric oxide reductase; DIIRON site, oxidoreductas | 99.82 | |
| 3f2v_A | 192 | General stress protein 14; alpha-beta protein., st | 99.82 | |
| 1ykg_A | 167 | SIR-FP, sulfite reductase [NADPH] flavoprotein alp | 99.81 | |
| 2wc1_A | 182 | Flavodoxin; electron transport, flavoprotein; HET: | 99.8 | |
| 3p0r_A | 211 | Azoreductase; structural genomics, center for stru | 99.8 | |
| 3tem_A | 228 | Ribosyldihydronicotinamide dehydrogenase [quinone; | 99.8 | |
| 1ag9_A | 175 | Flavodoxin; electron transport, reductive activati | 99.79 | |
| 2amj_A | 204 | Modulator of drug activity B; oxidoreductase, mena | 99.79 | |
| 3u7i_A | 223 | FMN-dependent NADH-azoreductase 1; structural geno | 99.79 | |
| 3klb_A | 162 | Putative flavoprotein; structural genomi center fo | 99.78 | |
| 4ici_A | 171 | Putative flavoprotein; PF12682 family protein, fla | 99.77 | |
| 1yob_A | 179 | Flavodoxin 2, flavodoxin II; alpha-beta fold, non- | 99.77 | |
| 3edo_A | 151 | Flavoprotein, putative Trp repressor binding prote | 99.76 | |
| 3rpe_A | 218 | MDAB, modulator of drug activity B; structural gen | 99.76 | |
| 2hna_A | 147 | Protein MIOC, flavodoxin; alpha-beta sandwich, fla | 99.76 | |
| 4gi5_A | 280 | Quinone reductase; protein structure initiative, F | 99.75 | |
| 2fcr_A | 173 | Flavodoxin; electron transport; HET: FMN; 1.80A {C | 99.74 | |
| 2bmv_A | 164 | Flavodoxin; electron transport, flavoprotein, FMN, | 99.72 | |
| 1bvy_F | 191 | Protein (cytochrome P450 BM-3); fatty acid monooxy | 99.7 | |
| 3ha2_A | 177 | NADPH-quinone reductase; structural genomics, PSI- | 99.67 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 99.65 | |
| 3hr4_A | 219 | Nitric oxide synthase, inducible; inducible nitric | 99.52 | |
| 2bpo_A | 682 | CPR, P450R, NADPH-cytochrom P450 reductase; NADPH- | 99.5 | |
| 2xod_A | 119 | NRDI protein, NRDI; flavoprotein, redox protein, r | 99.29 | |
| 3qe2_A | 618 | CPR, P450R, NADPH--cytochrome P450 reductase; cypo | 99.27 | |
| 1tll_A | 688 | Nitric-oxide synthase, brain; reductase module, FM | 99.14 | |
| 1rlj_A | 139 | NRDI protein; flavoprotein, FMN, thioredoxin, alph | 98.71 | |
| 3n3a_C | 153 | Protein NRDI; ribonucleotide reductase, four-helix | 98.33 | |
| 2m1z_A | 106 | LMO0427 protein; homolog PTS system IIB component, | 96.27 | |
| 2kyr_A | 111 | Fructose-like phosphotransferase enzyme IIB compo; | 96.24 | |
| 1tvm_A | 113 | PTS system, galactitol-specific IIB component; pho | 96.14 | |
| 1e2b_A | 106 | Enzyme IIB-cellobiose; phosphotransferase system, | 96.11 | |
| 2r48_A | 106 | Phosphotransferase system (PTS) mannose-specific i | 95.41 | |
| 2l2q_A | 109 | PTS system, cellobiose-specific IIB component (CE; | 95.11 | |
| 3czc_A | 110 | RMPB; alpha/beta sandwich, phosphotransferase syst | 95.07 | |
| 2r4q_A | 106 | Phosphotransferase system (PTS) fructose-specific | 95.01 | |
| 3nbm_A | 108 | PTS system, lactose-specific IIBC components; PTS_ | 94.22 | |
| 3rht_A | 259 | (gatase1)-like protein; structural genomics, PSI-b | 93.21 | |
| 1vkr_A | 125 | Mannitol-specific PTS system enzyme iiabc compone; | 91.52 | |
| 4gdh_A | 194 | DJ-1, uncharacterized protein C22E12.03C; unknown | 89.63 | |
| 3kkl_A | 244 | Probable chaperone protein HSP33; peptidase, heat | 88.49 | |
| 2iuf_A | 688 | Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen | 86.47 | |
| 1t0b_A | 252 | THUA-like protein; trehalose metabolism, NCS symme | 85.85 | |
| 4e5v_A | 281 | Putative THUA-like protein; THUA-like proteins, tr | 83.77 | |
| 3r5x_A | 307 | D-alanine--D-alanine ligase; alpha-beta structure, | 80.32 |
| >2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=231.41 Aligned_cols=194 Identities=38% Similarity=0.637 Sum_probs=146.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCc-ccccHhhhhhcCEEEEEc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDI-PEISAADLVEADGFLFGF 136 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~-~~i~~~~l~~AD~II~Gs 136 (260)
.||||+|||+|++|||++||++|++++++ .|++++++++.+. +.+|..|..|.. +++ +....+++.+||+|||||
T Consensus 4 ~M~kilii~~S~~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~-~~~~~~~~~~~~--~~~~~~~~~~~l~~aD~ii~gs 79 (200)
T 2a5l_A 4 SSPYILVLYYSRHGATAEMARQIARGVEQ-GGFEARVRTVPAV-STECEAVAPDIP--AEGALYATLEDLKNCAGLALGS 79 (200)
T ss_dssp -CCEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEBCCCE-EC---------------CCBCCHHHHHTCSEEEEEE
T ss_pred CcceEEEEEeCCCChHHHHHHHHHHHHhh-CCCEEEEEEhhhc-cchhhhhccccc--cccCchhhHHHHHHCCEEEEEc
Confidence 37899999999999999999999999998 8999999999987 677888877752 222 222368899999999999
Q ss_pred cccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcccccccc
Q 024934 137 PTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSI 216 (260)
Q Consensus 137 PtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~ 216 (260)
|+||+++|++||+|+|++..+|....|+||++++|+++|+..|+.+.++..+...|..+||.+++..+. .+.+ .+.+
T Consensus 80 P~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~--~~~~ 156 (200)
T 2a5l_A 80 PTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIPYS-EPAL--LETR 156 (200)
T ss_dssp ECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCCCC------------
T ss_pred ChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECCCCC-Cccc--cccc
Confidence 999999999999999999877765678999999999999876777778889999999999999987654 1111 1112
Q ss_pred CCCcccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024934 217 RGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKLC 258 (260)
Q Consensus 217 ~~g~~~g~~~~~~-~g~~~p~e~~le~a~~~G~~la~~~~~l~ 258 (260)
.++.+|+...+.+ +++..|++++++.|+.+|++|++.+++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~~~ 199 (200)
T 2a5l_A 157 GGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLG 199 (200)
T ss_dssp ---CTTSBCCBCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcceeeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666555432 44567999999999999999999999876
|
| >3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* | Back alignment and structure |
|---|
| >2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A* | Back alignment and structure |
|---|
| >3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
| >2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 | Back alignment and structure |
|---|
| >3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301} | Back alignment and structure |
|---|
| >3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A | Back alignment and structure |
|---|
| >1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A* | Back alignment and structure |
|---|
| >2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* | Back alignment and structure |
|---|
| >2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4 | Back alignment and structure |
|---|
| >1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A* | Back alignment and structure |
|---|
| >1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6 | Back alignment and structure |
|---|
| >5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* | Back alignment and structure |
|---|
| >3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A | Back alignment and structure |
|---|
| >3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A* | Back alignment and structure |
|---|
| >3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* | Back alignment and structure |
|---|
| >3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans} | Back alignment and structure |
|---|
| >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} | Back alignment and structure |
|---|
| >4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A* | Back alignment and structure |
|---|
| >2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 | Back alignment and structure |
|---|
| >2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
| >1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4 | Back alignment and structure |
|---|
| >1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A* | Back alignment and structure |
|---|
| >1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... | Back alignment and structure |
|---|
| >3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
| >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* | Back alignment and structure |
|---|
| >3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans} | Back alignment and structure |
|---|
| >3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii} | Back alignment and structure |
|---|
| >4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* | Back alignment and structure |
|---|
| >3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A* | Back alignment and structure |
|---|
| >1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A* | Back alignment and structure |
|---|
| >3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A* | Back alignment and structure |
|---|
| >1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A* | Back alignment and structure |
|---|
| >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 | Back alignment and structure |
|---|
| >1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A* | Back alignment and structure |
|---|
| >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* | Back alignment and structure |
|---|
| >3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola} | Back alignment and structure |
|---|
| >1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 | Back alignment and structure |
|---|
| >2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
| >3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ... | Back alignment and structure |
|---|
| >1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A* | Back alignment and structure |
|---|
| >2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A* | Back alignment and structure |
|---|
| >3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis} | Back alignment and structure |
|---|
| >3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
| >4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii} | Back alignment and structure |
|---|
| >1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1 | Back alignment and structure |
|---|
| >3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
| >3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis} | Back alignment and structure |
|---|
| >2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A | Back alignment and structure |
|---|
| >4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
| >2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1 | Back alignment and structure |
|---|
| >2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A* | Back alignment and structure |
|---|
| >1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1 | Back alignment and structure |
|---|
| >3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745} | Back alignment and structure |
|---|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
| >3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* | Back alignment and structure |
|---|
| >2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A* | Back alignment and structure |
|---|
| >3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* | Back alignment and structure |
|---|
| >1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 | Back alignment and structure |
|---|
| >1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7 | Back alignment and structure |
|---|
| >3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C* | Back alignment and structure |
|---|
| >2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e} | Back alignment and structure |
|---|
| >2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D | Back alignment and structure |
|---|
| >2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2 | Back alignment and structure |
|---|
| >2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi} | Back alignment and structure |
|---|
| >3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans} | Back alignment and structure |
|---|
| >2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2 | Back alignment and structure |
|---|
| >3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus} | Back alignment and structure |
|---|
| >1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B* | Back alignment and structure |
|---|
| >4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A | Back alignment and structure |
|---|
| >3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* | Back alignment and structure |
|---|
| >2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A* | Back alignment and structure |
|---|
| >1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6 | Back alignment and structure |
|---|
| >4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae} | Back alignment and structure |
|---|
| >3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 260 | ||||
| d1ydga_ | 201 | c.23.5.8 (A:) Trp repressor binding protein WrbA { | 6e-50 | |
| d2a5la1 | 196 | c.23.5.8 (A:3-198) Trp repressor binding protein W | 1e-47 | |
| d2arka1 | 184 | c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolic | 1e-33 | |
| d1e5da1 | 152 | c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreduct | 4e-17 | |
| d1sqsa_ | 232 | c.23.5.5 (A:) Hypothetical protein SP1951 {(Strept | 4e-15 | |
| d1ycga1 | 149 | c.23.5.1 (A:251-399) Nitric oxide reductase C-term | 1e-14 | |
| d1vmea1 | 148 | c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, | 3e-13 | |
| d1rlia_ | 179 | c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus | 8e-13 | |
| d5nula_ | 138 | c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii | 8e-08 | |
| d1nni1_ | 171 | c.23.5.4 (1:) Azobenzene reductase {Bacillus subti | 6e-06 | |
| d2fz5a1 | 137 | c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdeni | 8e-06 | |
| d1t0ia_ | 185 | c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker | 1e-04 | |
| d2fzva1 | 233 | c.23.5.4 (A:1-233) Putative arsenical resistance p | 0.002 |
| >d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Trp repressor binding protein WrbA species: Deinococcus radiodurans [TaxId: 1299]
Score = 161 bits (407), Expect = 6e-50
Identities = 68/204 (33%), Positives = 91/204 (44%), Gaps = 12/204 (5%)
Query: 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHM----KVPPRD 115
+K+ IVFYS G +A+ + G E L +V ET ++ +D
Sbjct: 3 VKLAIVFYSSTGTGYAMAQEAAEAGR-AAGAEVRLLKVRETAPQDVIDGQDAWKANIEAM 61
Query: 116 DDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTG 175
D+PE + ADL A+ +F PTR+G +QM+AF D+ G LW GKL K S
Sbjct: 62 KDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQ 121
Query: 176 TQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGDGTREP 235
GGQETT T H G + P GYT GG+PYGA V A +
Sbjct: 122 NVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIF-----KSGGNPYGASVTANG--QPL 174
Query: 236 SETELALAEHQGKYMAAVVKKLCE 259
E + A HQ + + KL E
Sbjct: 175 LENDRASIRHQVRRQVELTAKLLE 198
|
| >d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]} Length = 196 | Back information, alignment and structure |
|---|
| >d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} Length = 184 | Back information, alignment and structure |
|---|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} Length = 152 | Back information, alignment and structure |
|---|
| >d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]} Length = 232 | Back information, alignment and structure |
|---|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} Length = 149 | Back information, alignment and structure |
|---|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 148 | Back information, alignment and structure |
|---|
| >d1rlia_ c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus subtilis [TaxId: 1423]} Length = 179 | Back information, alignment and structure |
|---|
| >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} Length = 138 | Back information, alignment and structure |
|---|
| >d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]} Length = 171 | Back information, alignment and structure |
|---|
| >d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} Length = 137 | Back information, alignment and structure |
|---|
| >d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 185 | Back information, alignment and structure |
|---|
| >d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]} Length = 233 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 260 | |||
| d1ydga_ | 201 | Trp repressor binding protein WrbA {Deinococcus ra | 100.0 | |
| d2a5la1 | 196 | Trp repressor binding protein WrbA {Pseudomonas ae | 100.0 | |
| d2arka1 | 184 | Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | 100.0 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 99.95 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 99.95 | |
| d2fzva1 | 233 | Putative arsenical resistance protein {Shigella fl | 99.92 | |
| d1rlia_ | 179 | Hypothetical protein YwqN {Bacillus subtilis [TaxI | 99.91 | |
| d1sqsa_ | 232 | Hypothetical protein SP1951 {(Streptococcus pneumo | 99.9 | |
| d1vmea1 | 148 | ROO-like flavoprotein TM0755, C-terminal domain {T | 99.89 | |
| d1nni1_ | 171 | Azobenzene reductase {Bacillus subtilis [TaxId: 14 | 99.89 | |
| d1t0ia_ | 185 | Hypothetical protein Ylr011wp {Baker's yeast (Sacc | 99.87 | |
| d2fz5a1 | 137 | Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | 99.86 | |
| d1rtta_ | 174 | Hypothetical protein PA1204 {Pseudomonas aeruginos | 99.86 | |
| d5nula_ | 138 | Flavodoxin {Clostridium beijerinckii [TaxId: 1520] | 99.86 | |
| d2qwxa1 | 230 | Quinone reductase type 2 (menadione reductase) {Hu | 99.78 | |
| d1d4aa_ | 273 | NAD(P)H:quinone reductase {Human (Homo sapiens) [T | 99.78 | |
| d2z98a1 | 200 | ACP phosphodiesterase AcpD {Escherichia coli [TaxI | 99.73 | |
| d1f4pa_ | 147 | Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} | 99.71 | |
| d1oboa_ | 169 | Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 11 | 99.64 | |
| d1czna_ | 169 | Flavodoxin {Synechococcus elongatus PCC 7942 [TaxI | 99.61 | |
| d1yoba1 | 179 | Flavodoxin {Azotobacter vinelandii [TaxId: 354]} | 99.51 | |
| d1ag9a_ | 175 | Flavodoxin {Escherichia coli [TaxId: 562]} | 99.47 | |
| d2fcra_ | 173 | Flavodoxin {Chondrus crispus [TaxId: 2769]} | 99.44 | |
| d1fuea_ | 163 | Flavodoxin {Helicobacter pylori [TaxId: 210]} | 99.41 | |
| d1ykga1 | 146 | Sulfite reductase alpha-component CysJ N-terminal | 99.38 | |
| d1ja1a2 | 177 | NADPH-cytochrome p450 reductase, N-terminal domain | 99.2 | |
| d1bvyf_ | 152 | FMN-binding domain of the cytochrome P450bm-3 {Bac | 99.12 | |
| d1tlla2 | 202 | Nitric oxide (NO) synthase FMN domain {Rat (Rattus | 99.08 | |
| d1rlja_ | 135 | Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423] | 98.19 | |
| d2r48a1 | 103 | Mannose-specific enzyme IIBCA component ManP, N-te | 95.05 | |
| d2r4qa1 | 103 | Fructose-specific enzyme IIABC component FruA, mid | 94.97 | |
| d2a9va1 | 196 | GMP synthase subunit A, GuaAA {Archaeon Thermoplas | 93.92 | |
| d1iiba_ | 103 | Enzyme IIB-cellobiose {Escherichia coli [TaxId: 56 | 92.22 | |
| d1ka9h_ | 195 | GAT subunit, HisH, (or domain) of imidazoleglycero | 90.82 | |
| d1t0ba_ | 240 | GK2113 homologue {Bacillus stearothermophilus [Tax | 90.82 | |
| d1k9vf_ | 200 | GAT subunit, HisH, (or domain) of imidazoleglycero | 89.3 | |
| d1vhqa_ | 217 | Putative sigma cross-reacting protein 27A (SCRP-27 | 88.92 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 88.08 | |
| d1vkra_ | 97 | PTS system mannitol-specific EIICBA component {Esc | 86.38 | |
| d3eeqa2 | 207 | Cobalamin biosynthesis protein G, CbiG {Sulfolobus | 83.8 | |
| d1jvna2 | 232 | GAT subunit, HisH, (or domain) of imidazoleglycero | 81.94 | |
| d2nv0a1 | 195 | Hypothetical protein YaaE {Bacillus subtilis [TaxI | 80.72 | |
| d1gpma2 | 205 | GMP synthetase {Escherichia coli [TaxId: 562]} | 80.04 |
| >d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Trp repressor binding protein WrbA species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=1.2e-38 Score=269.11 Aligned_cols=192 Identities=34% Similarity=0.448 Sum_probs=168.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCC-----CCCCcccccHhhhhhcCEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPP-----RDDDIPEISAADLVEADGFL 133 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~-----~~dd~~~i~~~~l~~AD~II 133 (260)
.|||||||||++|||++||++|++++++ .|+|++++++.+..+..|..|..|.. .+|++..+ .++|.+||+||
T Consensus 2 ~mkilivy~S~~GnT~~la~~ia~g~~~-~G~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~i~~aD~ii 79 (201)
T d1ydga_ 2 PVKLAIVFYSSTGTGYAMAQEAAEAGRA-AGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEAT-PADLEWAEAIV 79 (201)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCC-HHHHHHCSEEE
T ss_pred CcEEEEEEeCCCcHHHHHHHHHHHHHHh-cCCEEEEEEccccCccchhhhhhHhhcCCCcccCchhhh-hhhHhhCCEeE
Confidence 6899999999999999999999999999 99999999999999999999887642 35566655 89999999999
Q ss_pred EEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccc
Q 024934 134 FGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKM 213 (260)
Q Consensus 134 ~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~ 213 (260)
|||||||++++++||.||||+..+|..+.|.||+++.|+++|+.+|+++.++.++...+.++||.+++.++.....
T Consensus 80 ~gsPvy~~~~s~~~k~flDr~~~~~~~~~l~gK~~~~~~s~g~~~gg~e~~~~~~~~~~~~~g~~~v~~~~~~~~~---- 155 (201)
T d1ydga_ 80 FSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVI---- 155 (201)
T ss_dssp EEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCCTTCSHHH----
T ss_pred EecceeeeeccchhHHHHHHhhhHHhccccCCceeeeeeccccCCCchHHHHHhHHHHHHHcCCccccccccchhh----
Confidence 9999999999999999999998888888899999999999999889999999999999999999999876642111
Q ss_pred cccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 024934 214 DSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKLCE 259 (260)
Q Consensus 214 ~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l~~ 259 (260)
...++++||...+.+ ...+++++++.|+.||++||+++++|++
T Consensus 156 -~~~gg~~~G~~~~~~--~~~~~e~~l~~ar~lGk~la~~a~kL~~ 198 (201)
T d1ydga_ 156 -FKSGGNPYGASVTAN--GQPLLENDRASIRHQVRRQVELTAKLLE 198 (201)
T ss_dssp -HHTTCCSSSCEEECC--SSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hcCCCcccCcceecC--CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 135778888877653 3469999999999999999999999863
|
| >d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
| >d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
| >d1rlia_ c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | Back information, alignment and structure |
|---|
| >d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
| >d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2z98a1 c.23.5.3 (A:1-200) ACP phosphodiesterase AcpD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} | Back information, alignment and structure |
|---|
| >d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]} | Back information, alignment and structure |
|---|
| >d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]} | Back information, alignment and structure |
|---|
| >d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
| >d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]} | Back information, alignment and structure |
|---|
| >d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
| >d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
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| >d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d2r48a1 c.44.2.2 (A:2-104) Mannose-specific enzyme IIBCA component ManP, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC component FruA, middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
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| >d1iiba_ c.44.2.1 (A:) Enzyme IIB-cellobiose {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
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| >d1vkra_ c.44.2.1 (A:) PTS system mannitol-specific EIICBA component {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d3eeqa2 c.152.1.1 (A:8-214) Cobalamin biosynthesis protein G, CbiG {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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