Citrus Sinensis ID: 024952

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Protein Sequence
MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPLPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccccHHcccEEcEEEccccccccccccccccccccccccEEEEccccccEEEEEEEEEEEEcccccccccccccEEcEEEEEEcccccccccccEEEEEEEEEEccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccHHHHHHHHEccccEcccccccccccHHHEEcccccEEEEcccccccccEEEEEEEEEEEcccccccEEEcEEEEccEEEEEEcHHcccEccccEEEEEEEEEEcccccccccEEEEEEc
Coil and Loop (DISEMBL)
mpqgdyielhrkrngyrldhFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEesssrrkvddevqegavpaylldrentTRAKVLSNTIKQKRKekagkwevplpkvrpvaeDEMFKVIRSGKRRTKQWKRMVTKAtfvgpgftrkppkyerfirpsglrftkahvthpelkctfnleiigvkknpngpmytslgvitkGTIIEVNvselglvtpagkvvwgkyaqvtnnpendgcinavllv
Flexible Loop (DISEMBL)
mpqgdyielhrkrngyrldhferkrkkearevhkrseiaqkalgikgkmfaKKRYAEKALMKKTLAmheesssrrkvddevqegavpaylldrenttrakvlsntikqkrkekagkwevplpkvrpvaedemfkvirsgkrrtkqwkrmvtkatfvgpgftrkppkyERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQvtnnpendgcinavllv
Low Complexity Region (SEG)
MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPLPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV
Disordered region (IsUnstruct)
****************************************************************************************YL****************************************EMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVL**
Disordered Region (DISOPRED)
**QGDYIELHRKRNGYRLDHFER*******************LGIKGKMFAKKRYAEKA*****************************YLLDRENTTRAKVL**********************************************MVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV
Disordered Region (DISEMBL)
MPQGDYIELHRKRNGYRLDHFERK**********RSEIAQKALGIKGKMFAKKRYAEKALMKKT*****************QEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPLPKVRPVAEDEMFKVIRS********KRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV
Disordered Region (DISPRO)
*PQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEES************GAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPLPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPLPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	260	2.2.26 [Sep-21-2011]
Q54GN8	260	Ribosome biogenesis prote	yes	no	1.0	1.0	0.753	1e-115
O95478	260	Ribosome biogenesis prote	yes	no	1.0	1.0	0.738	1e-111
Q9CR47	260	Ribosome biogenesis prote	yes	no	1.0	1.0	0.738	1e-111
Q3SX11	260	Ribosome biogenesis prote	yes	no	1.0	1.0	0.738	1e-111
Q9QYU7	260	Ribosome biogenesis prote	yes	no	1.0	1.0	0.726	1e-110
Q4P3S7	273	Ribosome biogenesis prote	N/A	no	0.992	0.945	0.662	1e-97
P0CQ60	254	Ribosome biogenesis prote	yes	no	0.976	1.0	0.665	9e-96
P0CQ61	254	Ribosome biogenesis prote	N/A	no	0.976	1.0	0.665	9e-96
Q9UU79	260	Ribosome biogenesis prote	yes	no	1.0	1.0	0.646	5e-94
Q75CG9	261	Ribosome biogenesis prote	yes	no	0.992	0.988	0.653	7e-94

>sp|Q54GN8|NSA2_DICDI Ribosome biogenesis protein NSA2 homolog OS=Dictyostelium discoideum GN=nsa2 PE=3 SV=1

 Score =  415 bits (1067), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/260 (75%), Positives = 225/260 (86%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQGD+IELH+KR G RLDH+E+ RKK AR  HKRS IAQK  G+K K++ KKRY+EKA 
Sbjct: 1   MPQGDHIELHQKRFGRRLDHYEKVRKKTARAAHKRSAIAQKVTGLKAKLYNKKRYSEKAE 60

Query: 61  MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
           MKKT+AMH+E ++++  DD+V+EGAVPAYLLDRE  +RAKVLSN +KQKRKEKAGKW+VP
Sbjct: 61  MKKTIAMHQERTNKKASDDKVKEGAVPAYLLDREGVSRAKVLSNMVKQKRKEKAGKWDVP 120

Query: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
           LPKVR ++EDEMFKV++SGKR+ K WKR VTK TFVG GFTRKPPKYERFIRP+GLRF K
Sbjct: 121 LPKVRAISEDEMFKVVKSGKRQKKAWKRFVTKVTFVGEGFTRKPPKYERFIRPTGLRFKK 180

Query: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
           AHVTHPELK TF L+I+ VKKNP  P YT LGVITKGTI+EVNVS+LGLVT  GKVVWGK
Sbjct: 181 AHVTHPELKSTFYLDILSVKKNPQSPTYTQLGVITKGTILEVNVSDLGLVTQTGKVVWGK 240

Query: 241 YAQVTNNPENDGCINAVLLV 260
            AQVTNNPENDGCINAVLLV
Sbjct: 241 MAQVTNNPENDGCINAVLLV 260

Involved in the biogenesis of the 60S ribosomal subunit. May play a part in the quality control of pre-60S particles.
Dictyostelium discoideum (taxid: 44689)

>sp|O95478|NSA2_HUMAN Ribosome biogenesis protein NSA2 homolog OS=Homo sapiens GN=NSA2 PE=1 SV=1

 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/260 (73%), Positives = 224/260 (86%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQ +YIELHRKR GYRLD+ E+KRKKE+RE H+RS+ A+K +G+K K++ K+R+AEK  
Sbjct: 1   MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60

Query: 61  MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
           MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN IKQKRKEKAGKWEVP
Sbjct: 61  MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120

Query: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
           LPKVR   E E+ KVIR+GKR+ K WKRMVTK  FVG GFTRKPPKYERFIRP GLRF K
Sbjct: 121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180

Query: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
           AHVTHPELK TF L I+GVKKNP+ P+YT+LGVITKGT+IEVNVSELGLVT  GKV+WGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240

Query: 241 YAQVTNNPENDGCINAVLLV 260
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260

Involved in the biogenesis of the 60S ribosomal subunit. May play a part in the quality control of pre-60S particles.

Homo sapiens (taxid: 9606)

>sp|Q9CR47|NSA2_MOUSE Ribosome biogenesis protein NSA2 homolog OS=Mus musculus GN=Nsa2 PE=2 SV=1

 Score =  400 bits (1028), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/260 (73%), Positives = 223/260 (85%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  
Sbjct: 1   MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60

Query: 61  MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
           MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN IKQKRKEKAGKWEVP
Sbjct: 61  MKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120

Query: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
           LPKVR   E E+ KVIR+GKR+ K WKRMVTK  FVG GFTRKPPKYERFIRP GLRF K
Sbjct: 121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180

Query: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
           AHVTHPELK TF L I+GVKKNP+ P+YT+LGVITKGT+IEVNVSELGLVT  GKV+WGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240

Query: 241 YAQVTNNPENDGCINAVLLV 260
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260

Involved in the biogenesis of the 60S ribosomal subunit. May play a part in the quality control of pre-60S particles.

Mus musculus (taxid: 10090)

>sp|Q3SX11|NSA2_BOVIN Ribosome biogenesis protein NSA2 homolog OS=Bos taurus GN=NSA2 PE=2 SV=1

 Score =  400 bits (1028), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/260 (73%), Positives = 223/260 (85%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  
Sbjct: 1   MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60

Query: 61  MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
           MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN IKQKRKEKAGKWEVP
Sbjct: 61  MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120

Query: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
           LPKVR   E E+ KVIR+GKR+ K WKRMVTK  FVG GFTRKPPKYERFIRP GLRF K
Sbjct: 121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180

Query: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
           AHVTHPELK TF L I+GVKKNP+ P+YT+LGVITKGT+IEVNVSELGLVT  GKV+WGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240

Query: 241 YAQVTNNPENDGCINAVLLV 260
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260

Involved in the biogenesis of the 60S ribosomal subunit. May play a part in the quality control of pre-60S particles.

Bos taurus (taxid: 9913)

>sp|Q9QYU7|NSA2_RAT Ribosome biogenesis protein NSA2 homolog OS=Rattus norvegicus GN=Nsa2 PE=2 SV=2

 Score =  397 bits (1019), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/260 (72%), Positives = 222/260 (85%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  
Sbjct: 1   MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60

Query: 61  MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
           MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN IKQKRKEKAGKWE P
Sbjct: 61  MKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWESP 120

Query: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
           LPKVR   E E+ KVIR+GKR+ K W+RMVTK  FVG GFTRKPPKYE+FIRP GLRF K
Sbjct: 121 LPKVRAQGETELLKVIRTGKRKKKAWRRMVTKVCFVGDGFTRKPPKYEKFIRPMGLRFKK 180

Query: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
           AHVTHPELK TF L I+GVKKNP+ P+YT+LGVITKGT+IEVNVSELGLVT  GKV+WGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240

Query: 241 YAQVTNNPENDGCINAVLLV 260
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260

Involved in the biogenesis of the 60S ribosomal subunit. May play a part in the quality control of pre-60S particles.

Rattus norvegicus (taxid: 10116)

>sp|Q4P3S7|NSA2_USTMA Ribosome biogenesis protein NSA2 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=NSA2 PE=3 SV=1

 Score =  355 bits (912), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 171/258 (66%), Positives = 200/258 (77%)

Query: 3   QGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMK 62
           Q DYIE H +R+G RLDH ER+RK+ AREVHK S +AQK  G+K KM  KKR  EK  MK
Sbjct: 14  QNDYIEEHIRRHGRRLDHEERQRKRAAREVHKASAVAQKVTGLKAKMLNKKRRNEKIQMK 73

Query: 63  KTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPLP 122
           KTL  HEE   ++         A+P YLLDRE    AK LS+ +K++RK+KA ++ VPLP
Sbjct: 74  KTLKAHEERDVKQASTSSDPNQALPTYLLDREGQKDAKALSSAVKERRKDKAARYSVPLP 133

Query: 123 KVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAH 182
           +VR +AEDE FKVI++GKR+ K WKRMVTK TFVG  FTRKPPK ERFIRP GLR+ KAH
Sbjct: 134 QVRGIAEDEAFKVIKTGKRKQKGWKRMVTKPTFVGESFTRKPPKLERFIRPMGLRYNKAH 193

Query: 183 VTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYA 242
           VTHPELK +FNL I+GVKKNP  P+YT LGV+TKGTIIEVNVSELG+ T  GKVVWGKYA
Sbjct: 194 VTHPELKASFNLPIVGVKKNPQSPLYTQLGVLTKGTIIEVNVSELGMTTTTGKVVWGKYA 253

Query: 243 QVTNNPENDGCINAVLLV 260
           QVTNNPENDGC+NAVLL+
Sbjct: 254 QVTNNPENDGCVNAVLLL 271

Involved in the biogenesis of the 60S ribosomal subunit. May play a part in the quality control of pre-60S particles.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|P0CQ60|NSA2_CRYNJ Ribosome biogenesis protein NSA2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=NSA2 PE=3 SV=1

 Score =  349 bits (896), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 169/254 (66%), Positives = 204/254 (80%)

Query: 7   IELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLA 66
           +E HRKR+G RLD+ E+KRK+ ARE HK S  AQK  G K K+   +R+AEK  MKKTL 
Sbjct: 1   MEEHRKRHGRRLDYEEKKRKRTAREAHKASADAQKIFGHKAKLHHARRHAEKVQMKKTLK 60

Query: 67  MHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPLPKVRP 126
            H+E + ++K D  V+EGA+PAYLLDR+    AK LS+ +K +RK++A K+ VPLPKVR 
Sbjct: 61  AHDERNVKQKDDGAVKEGALPAYLLDRDGQKDAKALSSAVKDRRKDRAAKYSVPLPKVRG 120

Query: 127 VAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHP 186
           +AE+EMFKVI++GK ++K WKRMV KATFVG GFTRKP K ERFIRP GLR TKA+VTHP
Sbjct: 121 IAEEEMFKVIKTGKSKSKSWKRMVNKATFVGEGFTRKPVKLERFIRPMGLRMTKANVTHP 180

Query: 187 ELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTN 246
           ELK TF L I+GVKKNP  P+YTSLGV+TKGTI+EVNVSELG+VT  GKVVW KYAQ+TN
Sbjct: 181 ELKTTFQLPILGVKKNPQSPLYTSLGVLTKGTILEVNVSELGMVTTGGKVVWSKYAQITN 240

Query: 247 NPENDGCINAVLLV 260
           NPENDGCIN+VLLV
Sbjct: 241 NPENDGCINSVLLV 254

Involved in the biogenesis of the 60S ribosomal subunit. May play a part in the quality control of pre-60S particles.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CQ61|NSA2_CRYNB Ribosome biogenesis protein NSA2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=NSA2 PE=3 SV=1

 Score =  349 bits (896), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 169/254 (66%), Positives = 204/254 (80%)

Query: 7   IELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLA 66
           +E HRKR+G RLD+ E+KRK+ ARE HK S  AQK  G K K+   +R+AEK  MKKTL 
Sbjct: 1   MEEHRKRHGRRLDYEEKKRKRTAREAHKASADAQKIFGHKAKLHHARRHAEKVQMKKTLK 60

Query: 67  MHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPLPKVRP 126
            H+E + ++K D  V+EGA+PAYLLDR+    AK LS+ +K +RK++A K+ VPLPKVR 
Sbjct: 61  AHDERNVKQKDDGAVKEGALPAYLLDRDGQKDAKALSSAVKDRRKDRAAKYSVPLPKVRG 120

Query: 127 VAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHP 186
           +AE+EMFKVI++GK ++K WKRMV KATFVG GFTRKP K ERFIRP GLR TKA+VTHP
Sbjct: 121 IAEEEMFKVIKTGKSKSKSWKRMVNKATFVGEGFTRKPVKLERFIRPMGLRMTKANVTHP 180

Query: 187 ELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTN 246
           ELK TF L I+GVKKNP  P+YTSLGV+TKGTI+EVNVSELG+VT  GKVVW KYAQ+TN
Sbjct: 181 ELKTTFQLPILGVKKNPQSPLYTSLGVLTKGTILEVNVSELGMVTTGGKVVWSKYAQITN 240

Query: 247 NPENDGCINAVLLV 260
           NPENDGCIN+VLLV
Sbjct: 241 NPENDGCINSVLLV 254

Involved in the biogenesis of the 60S ribosomal subunit. May play a part in the quality control of pre-60S particles.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q9UU79|NSA2_SCHPO Ribosome biogenesis protein nsa2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nsa2 PE=1 SV=1

 Score =  343 bits (881), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 168/260 (64%), Positives = 199/260 (76%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQ +YIE   +++G R DH ERKRKK ARE H  S  AQK  GIK K++ +KR  EK  
Sbjct: 1   MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQ 60

Query: 61  MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
           MKKT+  HEE ++ ++  D   +GAVP YLLDRE  ++AK+LS+ +KQKRKEKA K+ VP
Sbjct: 61  MKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVP 120

Query: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
           LP+VR VAE+EMFKVIR+GK +   WKRM+TKATFVG GFTR+P KYERFIRP  LR  K
Sbjct: 121 LPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQKK 180

Query: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
           A+VTH EL  T  L IIGVKKNP  P YT LGV+TKGT+IEVNVSELGLVT  GKVVWGK
Sbjct: 181 ANVTHKELGVTMQLPIIGVKKNPQSPTYTQLGVLTKGTVIEVNVSELGLVTSGGKVVWGK 240

Query: 241 YAQVTNNPENDGCINAVLLV 260
           YAQ+TNNPE DGC+NA+LL 
Sbjct: 241 YAQITNNPELDGCVNALLLT 260

Involved in the biogenesis of the 60S ribosomal subunit. May play a part in the quality control of pre-60S particles.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q75CG9|NSA2_ASHGO Ribosome biogenesis protein NSA2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NSA2 PE=3 SV=1

 Score =  343 bits (880), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 172/263 (65%), Positives = 205/263 (77%), Gaps = 5/263 (1%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQ +YIE H K++G RLDH ERKRK+EARE HK SE AQK  G KGK FAKKRYAEK  
Sbjct: 1   MPQNEYIEQHIKKHGRRLDHEERKRKREAREAHKISEKAQKLTGWKGKQFAKKRYAEKVA 60

Query: 61  MKKTLAMHEES---SSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKW 117
           M+K +  HE+S    + + ++D  +  A+PAYLLDRE    AK +S++IKQKR EKA K+
Sbjct: 61  MRKKIKAHEQSKLKGAAKPLEDSGE--ALPAYLLDREQANSAKAISSSIKQKRLEKADKF 118

Query: 118 EVPLPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLR 177
            VPLPKVR ++E+EMFKV+++GK +TK WKRM+TK TFVG GFTR+P K ER IRPS LR
Sbjct: 119 SVPLPKVRGISEEEMFKVVKTGKSKTKSWKRMITKHTFVGEGFTRRPVKMERIIRPSALR 178

Query: 178 FTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVV 237
             KA+VTHPEL  T  L I+GVKKNP  PMYT LGV+TKGTIIEVNVSELG+VT  GKVV
Sbjct: 179 QKKANVTHPELGVTVFLPILGVKKNPQSPMYTQLGVLTKGTIIEVNVSELGMVTSGGKVV 238

Query: 238 WGKYAQVTNNPENDGCINAVLLV 260
           WGKYAQ+TN P+ DGC+NAVLLV
Sbjct: 239 WGKYAQITNEPDRDGCVNAVLLV 261

Involved in the biogenesis of the 60S ribosomal subunit. May play a part in the quality control of pre-60S particles.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
255586521	260	TGF-beta-inducible nuclear protein, puta	1.0	1.0	0.957	1e-144
449451181	260	PREDICTED: ribosome biogenesis protein N	1.0	1.0	0.95	1e-143
449523511	260	PREDICTED: ribosome biogenesis protein N	1.0	1.0	0.946	1e-143
224088085	260	predicted protein [Populus trichocarpa]	1.0	1.0	0.95	1e-143
225439438	260	PREDICTED: ribosome biogenesis protein N	1.0	1.0	0.95	1e-142
224140024	260	predicted protein [Populus trichocarpa]	1.0	1.0	0.946	1e-142
118484685	260	unknown [Populus trichocarpa]	1.0	1.0	0.946	1e-142
118481073	260	unknown [Populus trichocarpa]	1.0	1.0	0.942	1e-142
296083154	280	unnamed protein product [Vitis vinifera]	0.996	0.925	0.949	1e-142
356537190	542	PREDICTED: uncharacterized protein LOC10	0.996	0.477	0.918	1e-140

>gi|255586521|ref|XP_002533899.1| TGF-beta-inducible nuclear protein, putative [Ricinus communis] gi|223526141|gb|EEF28481.1| TGF-beta-inducible nuclear protein, putative [Ricinus communis]

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/260 (95%), Positives = 254/260 (97%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQGDYIELHRKR+GYRLDHFERKRKKEAREVHKRSE AQK LGIKGKM AKK YAEKAL
Sbjct: 1   MPQGDYIELHRKRHGYRLDHFERKRKKEAREVHKRSERAQKTLGIKGKMIAKKNYAEKAL 60

Query: 61  MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
           MKKTLAMHEESSSRRKVDD+V EGAVPAYLLDRENTTRAK+LSNT+KQKRKEKAGKWEVP
Sbjct: 61  MKKTLAMHEESSSRRKVDDDVHEGAVPAYLLDRENTTRAKILSNTVKQKRKEKAGKWEVP 120

Query: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
           LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTK TFVGPGFTRKPPKYERFIRPSGLRFTK
Sbjct: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKVTFVGPGFTRKPPKYERFIRPSGLRFTK 180

Query: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
           AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKG+IIEVNVSELGLVTPAGKVVWGK
Sbjct: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGSIIEVNVSELGLVTPAGKVVWGK 240

Query: 241 YAQVTNNPENDGCINAVLLV 260
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451181|ref|XP_004143340.1| PREDICTED: ribosome biogenesis protein NSA2 homolog [Cucumis sativus]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/260 (95%), Positives = 254/260 (97%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQGDYIELHRKR+GYR DHFERKRKKEAREVHKRS  AQKALGIKGKMFAKKRYAEKAL
Sbjct: 1   MPQGDYIELHRKRHGYRHDHFERKRKKEAREVHKRSATAQKALGIKGKMFAKKRYAEKAL 60

Query: 61  MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
           MKKTLAMHEESSSRRKVDD+VQEGA+PAYLLDRENT RAK+LSNT+KQKRKEKAGKWEVP
Sbjct: 61  MKKTLAMHEESSSRRKVDDDVQEGALPAYLLDRENTARAKILSNTVKQKRKEKAGKWEVP 120

Query: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
           LPKVRPVAEDEMFKVIR+GKR+TKQWKRMVTKATFVG GFTRKPPKYERFIRPSGLRFTK
Sbjct: 121 LPKVRPVAEDEMFKVIRTGKRKTKQWKRMVTKATFVGAGFTRKPPKYERFIRPSGLRFTK 180

Query: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
           AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKG IIEVNVSELGLVTPAGKVVWGK
Sbjct: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGAIIEVNVSELGLVTPAGKVVWGK 240

Query: 241 YAQVTNNPENDGCINAVLLV 260
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523511|ref|XP_004168767.1| PREDICTED: ribosome biogenesis protein NSA2 homolog [Cucumis sativus]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/260 (94%), Positives = 254/260 (97%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQGDYIELHRKR+GYR DHFERKRKKEAREVHKRS  AQKALGIKGKMFAKKRYAEKAL
Sbjct: 1   MPQGDYIELHRKRHGYRHDHFERKRKKEAREVHKRSATAQKALGIKGKMFAKKRYAEKAL 60

Query: 61  MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
           MKKTLAMHEESSSRRKVDD+VQEGA+PAYLLDRENT RAK+LSNT+KQKRKEKAGKWEVP
Sbjct: 61  MKKTLAMHEESSSRRKVDDDVQEGALPAYLLDRENTARAKILSNTVKQKRKEKAGKWEVP 120

Query: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
           LPKVRPVAEDEMFKVIR+GKR+TKQWKRMVTKATFVG GFTRKPPKYERFIRPSGLRFTK
Sbjct: 121 LPKVRPVAEDEMFKVIRTGKRKTKQWKRMVTKATFVGAGFTRKPPKYERFIRPSGLRFTK 180

Query: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
           AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGV+TKG IIEVNVSELGLVTPAGKVVWGK
Sbjct: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVMTKGAIIEVNVSELGLVTPAGKVVWGK 240

Query: 241 YAQVTNNPENDGCINAVLLV 260
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088085|ref|XP_002308319.1| predicted protein [Populus trichocarpa] gi|222854295|gb|EEE91842.1| predicted protein [Populus trichocarpa]

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/260 (95%), Positives = 255/260 (98%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQGDYIELHRKR+GYRLDHFERKRKKEAREVHK SE AQKALGIKGKM AKK YAEKAL
Sbjct: 1   MPQGDYIELHRKRHGYRLDHFERKRKKEAREVHKHSERAQKALGIKGKMIAKKNYAEKAL 60

Query: 61  MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
           MKKTLAMHEES+SRRKVDD+VQ+GAVPAYLLDRENTTRAK+LSN+IKQKRKEKAGKWEVP
Sbjct: 61  MKKTLAMHEESTSRRKVDDDVQDGAVPAYLLDRENTTRAKILSNSIKQKRKEKAGKWEVP 120

Query: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
           LPKVRPVAEDEMFKVIRSGKR+TKQWKRMVTKATFVGPGFTRKPPKYERFIRP+GLRFTK
Sbjct: 121 LPKVRPVAEDEMFKVIRSGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTK 180

Query: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
           AHVTHPELKCTFNLEIIGVKKNPNGP YTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK
Sbjct: 181 AHVTHPELKCTFNLEIIGVKKNPNGPTYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240

Query: 241 YAQVTNNPENDGCINAVLLV 260
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439438|ref|XP_002266163.1| PREDICTED: ribosome biogenesis protein NSA2 homolog [Vitis vinifera]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/260 (95%), Positives = 254/260 (97%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQGDYI+LHRKR+GYR DHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKA 
Sbjct: 1   MPQGDYIDLHRKRHGYRPDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAQ 60

Query: 61  MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
           MKKTLAMHEESSSRRKVDD+V EGAVPAYLLDRE TTRAKVLSNTIKQKRKEKAGKWEVP
Sbjct: 61  MKKTLAMHEESSSRRKVDDDVHEGAVPAYLLDRETTTRAKVLSNTIKQKRKEKAGKWEVP 120

Query: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
           LPKVRPVAEDEMFKV+R+GKR+TKQWKRMVTKATFVGP FTRKPPKYERFIRPSGLRFTK
Sbjct: 121 LPKVRPVAEDEMFKVLRTGKRKTKQWKRMVTKATFVGPAFTRKPPKYERFIRPSGLRFTK 180

Query: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
           AHVTHPELKCTFNLEIIGVKKNPNG MYTSLGV+TKGTIIEVNVSELGLVTPAGKVVWGK
Sbjct: 181 AHVTHPELKCTFNLEIIGVKKNPNGQMYTSLGVMTKGTIIEVNVSELGLVTPAGKVVWGK 240

Query: 241 YAQVTNNPENDGCINAVLLV 260
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140024|ref|XP_002323387.1| predicted protein [Populus trichocarpa] gi|222868017|gb|EEF05148.1| predicted protein [Populus trichocarpa]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/260 (94%), Positives = 254/260 (97%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQGDYIELHRKR+GYRLDHFERKRKKEAREVHK SE AQKALGIKGKM AKK YAEKAL
Sbjct: 1   MPQGDYIELHRKRHGYRLDHFERKRKKEAREVHKHSERAQKALGIKGKMIAKKNYAEKAL 60

Query: 61  MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
           MKKTLAMHEES+SRRKVDD+V +GAVPAYLLDRENTTRAK+LSN+IKQKRKEKAGKWEVP
Sbjct: 61  MKKTLAMHEESTSRRKVDDDVHDGAVPAYLLDRENTTRAKILSNSIKQKRKEKAGKWEVP 120

Query: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
           LPKVRPVAEDEMFKVIRSGKR+TKQWKRMVTKATFVGPGFTRKPPKYERFIRP+GLRFTK
Sbjct: 121 LPKVRPVAEDEMFKVIRSGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTK 180

Query: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
           AHVTHPELKCTFNLEIIGVKKNPNGP YTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK
Sbjct: 181 AHVTHPELKCTFNLEIIGVKKNPNGPTYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240

Query: 241 YAQVTNNPENDGCINAVLLV 260
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484685|gb|ABK94213.1| unknown [Populus trichocarpa]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/260 (94%), Positives = 254/260 (97%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQGDYIELHRKR+GYRLDHFERKRKKEAREVHK SE AQKALGIKGKM AKK YAEK L
Sbjct: 1   MPQGDYIELHRKRHGYRLDHFERKRKKEAREVHKHSERAQKALGIKGKMIAKKNYAEKDL 60

Query: 61  MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
           MKKTLAMHEES+SRRKVDD+VQ+GAVPAYLLDRENTTRAK+LSN+IKQKRKEKAGKWEVP
Sbjct: 61  MKKTLAMHEESTSRRKVDDDVQDGAVPAYLLDRENTTRAKILSNSIKQKRKEKAGKWEVP 120

Query: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
           LPKVRPVAEDEMFKVIRSGKR+TKQWKRMVTKATFVGPGFTRKPPKYERFIRP+GLRFTK
Sbjct: 121 LPKVRPVAEDEMFKVIRSGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTK 180

Query: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
           AHVTHPELKCTFNLEIIGVKKNPNGP YTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK
Sbjct: 181 AHVTHPELKCTFNLEIIGVKKNPNGPTYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240

Query: 241 YAQVTNNPENDGCINAVLLV 260
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481073|gb|ABK92490.1| unknown [Populus trichocarpa]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/260 (94%), Positives = 254/260 (97%)

Query: 1   MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
           MPQGDYIELHRKR+GYRLDHFERKRKKEAREVHK SE AQKALGIKGKM AKK YAEKAL
Sbjct: 1   MPQGDYIELHRKRHGYRLDHFERKRKKEAREVHKHSERAQKALGIKGKMIAKKNYAEKAL 60

Query: 61  MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
           MKKTLAMHEES+SRRKVDD+V +GA+PAYLLDRENTTRAK+LSN+IKQKRKEKAGKWEVP
Sbjct: 61  MKKTLAMHEESTSRRKVDDDVHDGAIPAYLLDRENTTRAKILSNSIKQKRKEKAGKWEVP 120

Query: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
           LPKVRPVAEDEMFKVIRSGKR+TKQWKRMVTKATFVGPGFTRKPPKYERFIRP+GLRFTK
Sbjct: 121 LPKVRPVAEDEMFKVIRSGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTK 180

Query: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
           AHVTHPELKCTFNLEIIGVKKNPNGP YTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK
Sbjct: 181 AHVTHPELKCTFNLEIIGVKKNPNGPTYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240

Query: 241 YAQVTNNPENDGCINAVLLV 260
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083154|emb|CBI22790.3| unnamed protein product [Vitis vinifera]

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/259 (94%), Positives = 253/259 (97%)

Query: 2   PQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALM 61
           PQGDYI+LHRKR+GYR DHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKA M
Sbjct: 22  PQGDYIDLHRKRHGYRPDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAQM 81

Query: 62  KKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPL 121
           KKTLAMHEESSSRRKVDD+V EGAVPAYLLDRE TTRAKVLSNTIKQKRKEKAGKWEVPL
Sbjct: 82  KKTLAMHEESSSRRKVDDDVHEGAVPAYLLDRETTTRAKVLSNTIKQKRKEKAGKWEVPL 141

Query: 122 PKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKA 181
           PKVRPVAEDEMFKV+R+GKR+TKQWKRMVTKATFVGP FTRKPPKYERFIRPSGLRFTKA
Sbjct: 142 PKVRPVAEDEMFKVLRTGKRKTKQWKRMVTKATFVGPAFTRKPPKYERFIRPSGLRFTKA 201

Query: 182 HVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKY 241
           HVTHPELKCTFNLEIIGVKKNPNG MYTSLGV+TKGTIIEVNVSELGLVTPAGKVVWGKY
Sbjct: 202 HVTHPELKCTFNLEIIGVKKNPNGQMYTSLGVMTKGTIIEVNVSELGLVTPAGKVVWGKY 261

Query: 242 AQVTNNPENDGCINAVLLV 260
           AQVTNNPENDGCINAVLLV
Sbjct: 262 AQVTNNPENDGCINAVLLV 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537190|ref|XP_003537112.1| PREDICTED: uncharacterized protein LOC100782398 [Glycine max]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/259 (91%), Positives = 250/259 (96%)

Query: 2   PQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALM 61
           PQGDYIE HR+  GYRLDHFERKRKKEAR+VHKRS IAQKALGIKGKM AKK YAEKA M
Sbjct: 284 PQGDYIERHRRDYGYRLDHFERKRKKEARQVHKRSSIAQKALGIKGKMIAKKNYAEKAQM 343

Query: 62  KKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPL 121
           KKTLAMHEES+SRRK DD VQ+GAVPAYLLDR+NTTRAKVLSNTIKQKRKEKAGKW+VPL
Sbjct: 344 KKTLAMHEESTSRRKTDDNVQDGAVPAYLLDRDNTTRAKVLSNTIKQKRKEKAGKWDVPL 403

Query: 122 PKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKA 181
           PKVRPVAEDEMFKV+R+GKR+TKQWKRMVTKATFVGPGFTRKPPKYERFIRP+GLRFTKA
Sbjct: 404 PKVRPVAEDEMFKVVRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKA 463

Query: 182 HVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKY 241
           HVTHPELKCTFNLE+IGVKKNPNGPMYTSLGVIT+GTIIEVNVSELGLVTPAGKVVWGKY
Sbjct: 464 HVTHPELKCTFNLELIGVKKNPNGPMYTSLGVITRGTIIEVNVSELGLVTPAGKVVWGKY 523

Query: 242 AQVTNNPENDGCINAVLLV 260
           AQVTNNPENDGCINAVLLV
Sbjct: 524 AQVTNNPENDGCINAVLLV 542

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
TAIR|locus:2164245	260	AT5G06360 "AT5G06360" [Arabido	1.0	1.0	0.926	1.5e-129
DICTYBASE|DDB_G0290031	260	DDB_G0290031 "ribosome biogene	1.0	1.0	0.753	3.1e-106
UNIPROTKB|O95478	260	NSA2 "Ribosome biogenesis prot	1.0	1.0	0.738	8.6e-104
UNIPROTKB|Q3SX11	260	NSA2 "Ribosome biogenesis prot	1.0	1.0	0.738	1.1e-103
MGI|MGI:1913883	260	Nsa2 "NSA2 ribosome biogenesis	1.0	1.0	0.738	1.1e-103
UNIPROTKB|Q2I0Y6	260	Cdk105 "TGF beta-inducible nuc	1.0	1.0	0.738	1.1e-103
RGD|621335	260	Nsa2 "NSA2 ribosome biogenesis	1.0	1.0	0.726	1.6e-102
WB|WBGene00012351	259	W09C5.1 [Caenorhabditis elegan	0.996	1.0	0.669	1.7e-91
FB|FBgn0025366	259	Ip259 "Intronic Protein 259" [	0.996	1.0	0.676	5.7e-91
SGD|S000000928	261	NSA2 "Protein constituent of 6	1.0	0.996	0.662	2.9e-87

TAIR|locus:2164245 AT5G06360 "AT5G06360" [Arabidopsis thaliana (taxid:3702)]

 Score = 1271 (452.5 bits), Expect = 1.5e-129, P = 1.5e-129
 Identities = 241/260 (92%), Positives = 251/260 (96%)

Query:     1 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
             MPQGDYI+LHRKRNGYRLDHFERKRKKEAREVHK S +AQK+LGIKGKM AKK YAEKAL
Sbjct:     1 MPQGDYIDLHRKRNGYRLDHFERKRKKEAREVHKHSTMAQKSLGIKGKMIAKKNYAEKAL 60

Query:    61 MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
             MKKTL MHEESSSRRK D+ VQEGAVPAYLLDRE+TTRAKVLSNTIKQKRKEKAGKWEVP
Sbjct:    61 MKKTLKMHEESSSRRKADENVQEGAVPAYLLDREDTTRAKVLSNTIKQKRKEKAGKWEVP 120

Query:   121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
             LPKVRPVAEDEMF+VIRSGKR+TKQWKRMVTKATFVGP FTRKPPKYERFIRPSGLRFTK
Sbjct:   121 LPKVRPVAEDEMFRVIRSGKRKTKQWKRMVTKATFVGPAFTRKPPKYERFIRPSGLRFTK 180

Query:   181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
             AHVTHPELKCTF LEIIG+KKNPNGPMYTSLGV+T+GTIIEVNVSELGLVTPAGKVVWGK
Sbjct:   181 AHVTHPELKCTFCLEIIGIKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGK 240

Query:   241 YAQVTNNPENDGCINAVLLV 260
             YAQVTNNPENDGCINAVLLV
Sbjct:   241 YAQVTNNPENDGCINAVLLV 260

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

DICTYBASE|DDB_G0290031 DDB_G0290031 "ribosome biogenesis protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
 Identities = 196/260 (75%), Positives = 225/260 (86%)

Query:     1 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
             MPQGD+IELH+KR G RLDH+E+ RKK AR  HKRS IAQK  G+K K++ KKRY+EKA 
Sbjct:     1 MPQGDHIELHQKRFGRRLDHYEKVRKKTARAAHKRSAIAQKVTGLKAKLYNKKRYSEKAE 60

Query:    61 MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
             MKKT+AMH+E ++++  DD+V+EGAVPAYLLDRE  +RAKVLSN +KQKRKEKAGKW+VP
Sbjct:    61 MKKTIAMHQERTNKKASDDKVKEGAVPAYLLDREGVSRAKVLSNMVKQKRKEKAGKWDVP 120

Query:   121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
             LPKVR ++EDEMFKV++SGKR+ K WKR VTK TFVG GFTRKPPKYERFIRP+GLRF K
Sbjct:   121 LPKVRAISEDEMFKVVKSGKRQKKAWKRFVTKVTFVGEGFTRKPPKYERFIRPTGLRFKK 180

Query:   181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
             AHVTHPELK TF L+I+ VKKNP  P YT LGVITKGTI+EVNVS+LGLVT  GKVVWGK
Sbjct:   181 AHVTHPELKSTFYLDILSVKKNPQSPTYTQLGVITKGTILEVNVSDLGLVTQTGKVVWGK 240

Query:   241 YAQVTNNPENDGCINAVLLV 260
              AQVTNNPENDGCINAVLLV
Sbjct:   241 MAQVTNNPENDGCINAVLLV 260

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|O95478 NSA2 "Ribosome biogenesis protein NSA2 homolog" [Homo sapiens (taxid:9606)]

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 192/260 (73%), Positives = 224/260 (86%)

Query:     1 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
             MPQ +YIELHRKR GYRLD+ E+KRKKE+RE H+RS+ A+K +G+K K++ K+R+AEK  
Sbjct:     1 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60

Query:    61 MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
             MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN IKQKRKEKAGKWEVP
Sbjct:    61 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120

Query:   121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
             LPKVR   E E+ KVIR+GKR+ K WKRMVTK  FVG GFTRKPPKYERFIRP GLRF K
Sbjct:   121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180

Query:   181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
             AHVTHPELK TF L I+GVKKNP+ P+YT+LGVITKGT+IEVNVSELGLVT  GKV+WGK
Sbjct:   181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240

Query:   241 YAQVTNNPENDGCINAVLLV 260
             YAQVTNNPENDGCINAVLLV
Sbjct:   241 YAQVTNNPENDGCINAVLLV 260

GO:0006364 "rRNA processing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q3SX11 NSA2 "Ribosome biogenesis protein NSA2 homolog" [Bos taurus (taxid:9913)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 192/260 (73%), Positives = 223/260 (85%)

Query:     1 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
             MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  
Sbjct:     1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60

Query:    61 MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
             MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN IKQKRKEKAGKWEVP
Sbjct:    61 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120

Query:   121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
             LPKVR   E E+ KVIR+GKR+ K WKRMVTK  FVG GFTRKPPKYERFIRP GLRF K
Sbjct:   121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180

Query:   181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
             AHVTHPELK TF L I+GVKKNP+ P+YT+LGVITKGT+IEVNVSELGLVT  GKV+WGK
Sbjct:   181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240

Query:   241 YAQVTNNPENDGCINAVLLV 260
             YAQVTNNPENDGCINAVLLV
Sbjct:   241 YAQVTNNPENDGCINAVLLV 260

GO:0005730 "nucleolus" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

MGI|MGI:1913883 Nsa2 "NSA2 ribosome biogenesis homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 192/260 (73%), Positives = 223/260 (85%)

Query:     1 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
             MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  
Sbjct:     1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60

Query:    61 MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
             MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN IKQKRKEKAGKWEVP
Sbjct:    61 MKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120

Query:   121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
             LPKVR   E E+ KVIR+GKR+ K WKRMVTK  FVG GFTRKPPKYERFIRP GLRF K
Sbjct:   121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180

Query:   181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
             AHVTHPELK TF L I+GVKKNP+ P+YT+LGVITKGT+IEVNVSELGLVT  GKV+WGK
Sbjct:   181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240

Query:   241 YAQVTNNPENDGCINAVLLV 260
             YAQVTNNPENDGCINAVLLV
Sbjct:   241 YAQVTNNPENDGCINAVLLV 260

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q2I0Y6 Cdk105 "TGF beta-inducible nuclear protein" [Rattus norvegicus (taxid:10116)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 192/260 (73%), Positives = 223/260 (85%)

Query:     1 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
             MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  
Sbjct:     1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60

Query:    61 MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
             MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN IKQKRKEKAGKWEVP
Sbjct:    61 MKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120

Query:   121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
             LPKVR   E E+ KVIR+GKR+ K WKRMVTK  FVG GFTRKPPKYERFIRP GLRF K
Sbjct:   121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180

Query:   181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
             AHVTHPELK TF L I+GVKKNP+ P+YT+LGVITKGT+IEVNVSELGLVT  GKV+WGK
Sbjct:   181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240

Query:   241 YAQVTNNPENDGCINAVLLV 260
             YAQVTNNPENDGCINAVLLV
Sbjct:   241 YAQVTNNPENDGCINAVLLV 260

GO:0005634 "nucleus" evidence=IEA

RGD|621335 Nsa2 "NSA2 ribosome biogenesis homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
 Identities = 189/260 (72%), Positives = 222/260 (85%)

Query:     1 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
             MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  
Sbjct:     1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60

Query:    61 MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
             MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN IKQKRKEKAGKWE P
Sbjct:    61 MKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWESP 120

Query:   121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
             LPKVR   E E+ KVIR+GKR+ K W+RMVTK  FVG GFTRKPPKYE+FIRP GLRF K
Sbjct:   121 LPKVRAQGETELLKVIRTGKRKKKAWRRMVTKVCFVGDGFTRKPPKYEKFIRPMGLRFKK 180

Query:   181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
             AHVTHPELK TF L I+GVKKNP+ P+YT+LGVITKGT+IEVNVSELGLVT  GKV+WGK
Sbjct:   181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240

Query:   241 YAQVTNNPENDGCINAVLLV 260
             YAQVTNNPENDGCINAVLLV
Sbjct:   241 YAQVTNNPENDGCINAVLLV 260

GO:0005730 "nucleolus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

WB|WBGene00012351 W09C5.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 174/260 (66%), Positives = 208/260 (80%)

Query:     1 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
             MPQ ++IELHRKR+G RLDH ER+RKK AR  H RS++A+   G K K++ KKRY+EK  
Sbjct:     1 MPQNEHIELHRKRHGRRLDHEERQRKKLARAAHDRSQMAKTLRGHKAKLYHKKRYSEKVE 60

Query:    61 MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
             M+K L  HEE   +  V+ +  +GAVPAYLLDR+  T   VLSN IKQKRK+KAGK+ VP
Sbjct:    61 MRKLLKQHEEKDQKNTVE-QPDKGAVPAYLLDRQQQTSGTVLSNMIKQKRKQKAGKFNVP 119

Query:   121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
             +P+VR V++ E FKV+++GK   K WKRMVTK TFVG  FTRKP K+ERFIRP GLRF K
Sbjct:   120 IPQVRAVSDAEAFKVVKTGKTNRKGWKRMVTKVTFVGESFTRKPAKFERFIRPMGLRFKK 179

Query:   181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
             AHVTHPEL+ TF+L I+GVKKNP+  MYTSLGVITKGTI+EVNVSELG+VT  GKVVWGK
Sbjct:   180 AHVTHPELQTTFHLPIVGVKKNPSSQMYTSLGVITKGTILEVNVSELGMVTQGGKVVWGK 239

Query:   241 YAQVTNNPENDGCINAVLLV 260
             +AQVTNNPENDGCINAVLL+
Sbjct:   240 FAQVTNNPENDGCINAVLLI 259

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

FB|FBgn0025366 Ip259 "Intronic Protein 259" [Drosophila melanogaster (taxid:7227)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 176/260 (67%), Positives = 209/260 (80%)

Query:     1 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
             MPQ +Y+E HRK  G RLD+ ERKRKKEAR    R+  A+K  GIK K+F K+R  EK  
Sbjct:     1 MPQNEYMERHRKLYGRRLDYEERKRKKEARLPKDRARKARKLRGIKAKLFNKERRNEKIQ 60

Query:    61 MKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVP 120
             +KK +  HEE   +++ +++V++GA+P YLLDR   + AKVLSN IKQKRKEKAGKW+VP
Sbjct:    61 IKKKIQAHEEKKVKKQ-EEKVEDGALPHYLLDRGIQSSAKVLSNMIKQKRKEKAGKWDVP 119

Query:   121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTK 180
             +PKVR  ++ E+FKV+++GK + K WKRMVTK TFVG  FTRKPPK+ERFIRP GLR  K
Sbjct:   120 IPKVRAQSDAEVFKVLKTGKTKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMGLRMKK 179

Query:   181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240
             AHVTHPELK TFNL IIGVKKNP+ PM+TSLGVITKGT+IEVN+SELGLVT  GKVVWGK
Sbjct:   180 AHVTHPELKATFNLPIIGVKKNPSSPMFTSLGVITKGTVIEVNISELGLVTQTGKVVWGK 239

Query:   241 YAQVTNNPENDGCINAVLLV 260
             YAQVTNNPENDG INAVLLV
Sbjct:   240 YAQVTNNPENDGVINAVLLV 259

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

SGD|S000000928 NSA2 "Protein constituent of 66S pre-ribosomal particles" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 173/261 (66%), Positives = 200/261 (76%)

Query:     1 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAL 60
             MPQ DYIE H K++G RLDH ERKRK+EARE HK SE AQK  G KGK FAKKRYAEK  
Sbjct:     1 MPQNDYIERHIKQHGKRLDHEERKRKREARESHKISERAQKLTGWKGKQFAKKRYAEKVS 60

Query:    61 MKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEV 119
             M+K +  HE+S  +        +G A+P YLLDRE    AK +S++IKQKR EKA K+ V
Sbjct:    61 MRKKIKAHEQSKVKGSSKPLDTDGDALPTYLLDREQNNTAKAISSSIKQKRLEKADKFSV 120

Query:   120 PLPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFT 179
             PLPKVR ++E+EMFKVI++GK R+K WKRM+TK TFVG GFTR+P K ER IRPS LR  
Sbjct:   121 PLPKVRGISEEEMFKVIKTGKSRSKSWKRMITKHTFVGEGFTRRPVKMERIIRPSALRQK 180

Query:   180 KAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWG 239
             KA+VTHPEL  T  L I+ VKKNP  PMYT LGV+TKGTIIEVNVSELG+VT  GKVVWG
Sbjct:   181 KANVTHPELGVTVFLPILAVKKNPQSPMYTQLGVLTKGTIIEVNVSELGMVTAGGKVVWG 240

Query:   240 KYAQVTNNPENDGCINAVLLV 260
             KYAQVTN P+ DGC+NAVLLV
Sbjct:   241 KYAQVTNEPDRDGCVNAVLLV 261

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006364 "rRNA processing" evidence=IEA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0042273 "ribosomal large subunit biogenesis" evidence=IMP;IPI

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CR47	NSA2_MOUSE	No assigned EC number	0.7384	1.0	1.0	yes	no
A5DZE1	NSA2_LODEL	No assigned EC number	0.6398	1.0	0.9961	N/A	no
Q6CNC5	NSA2_KLULA	No assigned EC number	0.6603	0.9961	0.9923	yes	no
Q4P3S7	NSA2_USTMA	No assigned EC number	0.6627	0.9923	0.9450	N/A	no
Q6BU14	NSA2_DEBHA	No assigned EC number	0.6245	1.0	0.9961	yes	no
Q4WX36	NSA2_ASPFU	No assigned EC number	0.6046	0.9884	0.9081	yes	no
A7TIZ1	NSA2_VANPO	No assigned EC number	0.6564	0.9961	0.9923	N/A	no
P40078	NSA2_YEAST	No assigned EC number	0.6615	0.9923	0.9885	yes	no
O95478	NSA2_HUMAN	No assigned EC number	0.7384	1.0	1.0	yes	no
Q5A2Y7	NSA2_CANAL	No assigned EC number	0.6283	1.0	0.9961	N/A	no
A1CJS8	NSA2_ASPCL	No assigned EC number	0.6015	0.9807	0.9622	N/A	no
A3LQ06	NSA2_PICST	No assigned EC number	0.6321	1.0	0.9961	yes	no
Q5B954	NSA2_EMENI	No assigned EC number	0.5862	1.0	0.9961	yes	no
Q9UU79	NSA2_SCHPO	No assigned EC number	0.6461	1.0	1.0	yes	no
Q3SX11	NSA2_BOVIN	No assigned EC number	0.7384	1.0	1.0	yes	no
Q75CG9	NSA2_ASHGO	No assigned EC number	0.6539	0.9923	0.9885	yes	no
P0CQ60	NSA2_CRYNJ	No assigned EC number	0.6653	0.9769	1.0	yes	no
Q54GN8	NSA2_DICDI	No assigned EC number	0.7538	1.0	1.0	yes	no
Q0UV95	NSA2_PHANO	No assigned EC number	0.6245	1.0	0.9961	N/A	no
P0CQ61	NSA2_CRYNB	No assigned EC number	0.6653	0.9769	1.0	N/A	no
Q1DQ27	NSA2_COCIM	No assigned EC number	0.6130	1.0	0.9961	N/A	no
Q7SGE1	NSA2_NEUCR	No assigned EC number	0.5977	1.0	0.9961	N/A	no
A6S4J2	NSA2_BOTFB	No assigned EC number	0.6235	0.9769	0.9960	N/A	no
A1D7P0	NSA2_NEOFI	No assigned EC number	0.6070	0.9846	0.9446	N/A	no
Q6C6D1	NSA2_YARLI	No assigned EC number	0.6466	0.9846	0.9770	yes	no
A5DCN7	NSA2_PICGU	No assigned EC number	0.6321	1.0	0.9961	N/A	no
Q9QYU7	NSA2_RAT	No assigned EC number	0.7269	1.0	1.0	yes	no
Q6FN72	NSA2_CANGA	No assigned EC number	0.6513	1.0	0.9961	yes	no
A6R3Q6	NSA2_AJECN	No assigned EC number	0.6015	1.0	0.9961	N/A	no
A6ZR80	NSA2_YEAS7	No assigned EC number	0.6615	0.9923	0.9885	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	260
cd11381	257	cd11381, NSA2, pre-ribosomal protein NSA2 (Nop sev	0.0
PTZ00388	223	PTZ00388, PTZ00388, 40S ribosomal protein S8-like;	1e-141
cd11380	138	cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal r	3e-66
pfam01201	129	pfam01201, Ribosomal_S8e, Ribosomal protein S8e	3e-24
COG2007	127	COG2007, RPS8A, Ribosomal protein S8E [Translation	9e-24
PRK04049	127	PRK04049, PRK04049, 30S ribosomal protein S8e; Val	1e-07
pfam01201	129	pfam01201, Ribosomal_S8e, Ribosomal protein S8e	6e-07
cd11382	122	cd11382, Ribosomal_S8e, Eukaryotic/archaeal riboso	1e-06
TIGR00307	127	TIGR00307, S8e, ribosomal protein S8	5e-05

>gnl|CDD|211393 cd11381, NSA2, pre-ribosomal protein NSA2 (Nop seven-associated 2)

 Score =  513 bits (1324), Expect = 0.0
 Identities = 203/257 (78%), Positives = 222/257 (86%)

Query: 4   GDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKK 63
            +YIELHRKR+G RLDH ERKRKKEARE HKRS+ AQK  G+K K++ KKRY EK  MKK
Sbjct: 1   NEYIELHRKRHGRRLDHEERKRKKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKK 60

Query: 64  TLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPLPK 123
           T+ MHEE + ++KVDD+V EGAVPAYLLDRE  +RAKVLSN IKQKRKEKAGKW VPLPK
Sbjct: 61  TIKMHEERNVKQKVDDKVPEGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWSVPLPK 120

Query: 124 VRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHV 183
           VR ++EDEMFKV+++GKR+ K WKRMVTK TFVG GFTRKPPKYERFIRP GLRF KAHV
Sbjct: 121 VRGISEDEMFKVVKTGKRKKKSWKRMVTKVTFVGEGFTRKPPKYERFIRPMGLRFKKAHV 180

Query: 184 THPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQ 243
           THPELK TF L IIGVKKNP  P+YT LGVITKGTIIEVNVSELGLVT  GKVVWGKYAQ
Sbjct: 181 THPELKATFCLPIIGVKKNPQSPLYTQLGVITKGTIIEVNVSELGLVTQGGKVVWGKYAQ 240

Query: 244 VTNNPENDGCINAVLLV 260
           VTNNPENDGCINAVLLV
Sbjct: 241 VTNNPENDGCINAVLLV 257

NSA2 appears to be a protein required for the maturation of 27S pre-rRNA in yeast; it has been characterized in mammalian cells as a nucleolar protein that might play a role in the regulation of the cell cycle and in cell proliferation. Length = 257

>gnl|CDD|240396 PTZ00388, PTZ00388, 40S ribosomal protein S8-like; Provisional

 Score =  394 bits (1014), Expect = e-141
 Identities = 170/222 (76%), Positives = 189/222 (85%)

Query: 39  AQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTR 98
           AQK  GIK K+F KKRYAEKA MKKT+  HEE   + KV ++V +GAVP+YLLDRE   R
Sbjct: 2   AQKLRGIKAKLFNKKRYAEKAEMKKTIKAHEEKDVKEKVPEKVPDGAVPSYLLDREQVNR 61

Query: 99  AKVLSNTIKQKRKEKAGKWEVPLPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGP 158
           AKVLSN +KQKRKEKAGKW+VP+PKV+ + EDEMFKV++SGKR+ K WKR+V K TFVG 
Sbjct: 62  AKVLSNMLKQKRKEKAGKWDVPIPKVKAMNEDEMFKVVKSGKRKKKSWKRLVNKVTFVGE 121

Query: 159 GFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGT 218
            FTRKPPKYERFIRP+GLRF KAHVTHPELK TF L+IIGVKKNP   +YTSLGVITKGT
Sbjct: 122 DFTRKPPKYERFIRPTGLRFKKAHVTHPELKTTFYLDIIGVKKNPQSNLYTSLGVITKGT 181

Query: 219 IIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 260
           IIEVNVSELGLVT  GKVVWGKYAQVTNNPENDGCINAVLLV
Sbjct: 182 IIEVNVSELGLVTQTGKVVWGKYAQVTNNPENDGCINAVLLV 223

Length = 223

>gnl|CDD|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal protein S8e and similar proteins

 Score =  201 bits (515), Expect = 3e-66
 Identities = 73/140 (52%), Positives = 86/140 (61%), Gaps = 2/140 (1%)

Query: 120 PLPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFT 179
           P  K +  A    FKV+R  ++     K   TK    G  FTRK       I+P  LR  
Sbjct: 1   PQGKHKRKATGGKFKVVRKKRKYELGRKPANTKLG--GERFTRKVRVRGGNIKPRALRLD 58

Query: 180 KAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWG 239
           KA+V+HPEL  T  L+I+GVKKNP+   Y   GVITKGTIIE +VS LGLVT  GKVVWG
Sbjct: 59  KANVSHPELGKTKKLKILGVKKNPSNNEYVRRGVITKGTIIETDVSPLGLVTEEGKVVWG 118

Query: 240 KYAQVTNNPENDGCINAVLL 259
            YAQVT+ P  DGC+NAVLL
Sbjct: 119 GYAQVTSRPGQDGCVNAVLL 138

This family contains the eukaryotic/archaeal ribosomal protein S8, a component of the small ribosomal subunits, as well as the NSA2 gene product. Length = 138

>gnl|CDD|201659 pfam01201, Ribosomal_S8e, Ribosomal protein S8e

 Score = 93.7 bits (234), Expect = 3e-24
 Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 12/85 (14%)

Query: 175 GLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAG 234
            LR  KA+V+ P    T  + I+GV  NP    Y    +ITKG IIE +VSELG      
Sbjct: 57  ALRLDKANVSWPSEGTTRKVRILGVVYNPANNEYVRRNIITKGAIIETDVSELGK----- 111

Query: 235 KVVWGKYAQVTNNPENDGCINAVLL 259
                  A+VT+ P  DG +N VLL
Sbjct: 112 -------ARVTSRPGQDGRVNGVLL 129

Length = 129

>gnl|CDD|224918 COG2007, RPS8A, Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]

 Score = 92.4 bits (230), Expect = 9e-24
 Identities = 39/114 (34%), Positives = 48/114 (42%), Gaps = 26/114 (22%)

Query: 147 KRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGP 206
           KR   K    G  F  +            LR   A+V+ PE   T   +IIGV +NP  P
Sbjct: 40  KRKRKKVRTRGGNFKVR-----------ALRAKTANVSDPETGKTKKAKIIGVVENPANP 88

Query: 207 MYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 260
            Y    +ITKG IIE  +                YA VT+ P  DG +NAVLL 
Sbjct: 89  EYVRRNIITKGAIIETEIG---------------YAVVTSRPGQDGVVNAVLLE 127

Length = 127

>gnl|CDD|235214 PRK04049, PRK04049, 30S ribosomal protein S8e; Validated

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 15/84 (17%)

Query: 176 LRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGK 235
           LR   A+V  P+   T  ++I+ V +NP  P Y    +ITKG IIE         T  GK
Sbjct: 57  LRANYANVADPKTGKTKKVKILTVVENPANPHYARRNIITKGAIIE---------TELGK 107

Query: 236 VVWGKYAQVTNNPENDGCINAVLL 259
                 A+VT+ P  DG +NAVL+
Sbjct: 108 ------AKVTSRPGQDGVVNAVLI 125

Length = 127

>gnl|CDD|201659 pfam01201, Ribosomal_S8e, Ribosomal protein S8e

 Score = 47.1 bits (113), Expect = 6e-07
 Identities = 14/31 (45%), Positives = 15/31 (48%)

Query: 1  MPQGDYIELHRKRNGYRLDHFERKRKKEARE 31
          M     I   RKR G RLDH  +KRK E   
Sbjct: 1  MGINQGIRSKRKRTGGRLDHHRKKRKFELGR 31

Length = 129

>gnl|CDD|211394 cd11382, Ribosomal_S8e, Eukaryotic/archaeal ribosomal protein S8e (RPS8)

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 15/84 (17%)

Query: 176 LRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGK 235
           LR    +V+ P    T  ++I+ V  NP          +TKG IIE    + GL      
Sbjct: 54  LRLDTGNVSWPSEGKTKKVKILDVVYNPANNELVRRNTLTKGAIIET---DRGL------ 104

Query: 236 VVWGKYAQVTNNPENDGCINAVLL 259
                 A+VT+ P  DG +N VLL
Sbjct: 105 ------ARVTSRPGQDGVVNGVLL 122

The eukaryotic/archaeal ribosomal protein S8 is a component of the small (40S in eukaryotes, 30S in archaea) ribosomal subunits and interacts tightly with 18S rRNA (16S rRNA in archaea, presumably). Length = 122

>gnl|CDD|129407 TIGR00307, S8e, ribosomal protein S8

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 15/84 (17%)

Query: 176 LRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGK 235
           LR   A+V+ PE      +EI GV +NP    Y    VITKG I+E ++           
Sbjct: 57  LRDETANVSDPETGKVKKVEIAGVVENPANNHYVRRNVITKGAIVETDIG---------- 106

Query: 236 VVWGKYAQVTNNPENDGCINAVLL 259
                YA+VT+ P  DG +N VL+
Sbjct: 107 -----YARVTSRPGQDGVVNGVLI 125

e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	260
KOG3163	260	consensus Uncharacterized conserved protein relate	100.0
PTZ00388	223	40S ribosomal protein S8-like; Provisional	100.0
PF01201	132	Ribosomal_S8e: Ribosomal protein S8e; InterPro: IP	100.0
COG2007	127	RPS8A Ribosomal protein S8E [Translation, ribosoma	100.0
PRK04049	127	30S ribosomal protein S8e; Validated	99.96
TIGR00307	127	S8e ribosomal protein S8.e. Archaeal and eukaryoti	99.96
PTZ00148	205	40S ribosomal protein S8; Provisional	99.94
KOG3283	200	consensus 40S ribosomal protein S8 [Translation, r	99.86

>KOG3163 consensus Uncharacterized conserved protein related to ribosomal protein S8E [General function prediction only]

Probab=100.00  E-value=3.5e-140  Score=932.62  Aligned_cols=260  Identities=79%  Similarity=1.201  Sum_probs=259.1

Q ss_pred             CCChhHHHHHHHhcCCCCChHHHHHhHHHHHHhHhhHHHHHhcccchhhhhhhhHHHHHHhHHHHHhhhhhcccCCCCCC
Q 024952            1 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDE   80 (260)
Q Consensus         1 mpqne~ie~h~k~~g~rld~~er~rkk~ar~~h~~s~~a~~l~g~kakl~~k~r~~eki~mkk~i~~he~~~~k~~~~~~   80 (260)
                      ||||||||+|+|+||||||||||+||+|||++|.+|+.||+|+|||||||+++||+|||||||+|+||||++.+++.++.
T Consensus         1 MPQndyie~h~k~~GrRlDheerkrKkeaR~~h~~s~~Akkl~G~KaKl~~kkr~aeKiqmkK~ik~hee~~~k~~~~e~   80 (260)
T KOG3163|consen    1 MPQNDYIERHRKRHGRRLDHEERKRKKEAREAHDRSKMAKKLRGIKAKLFAKKRYAEKIQMKKTIKMHEEKKKKQKNDEK   80 (260)
T ss_pred             CCchhHHHHHHHHhccccCHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeecccCccchhhhhHHHHHHhhhhhccccccCCccccCcchhhheeeecCccccccccccceeeeeeCCCC
Q 024952           81 VQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPLPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGF  160 (260)
Q Consensus        81 ~~~~a~p~ylldr~~~~~ak~lsn~ikqkrkeka~k~~vplpkv~~~~e~e~fkv~~tgk~~~k~wkrmvtk~~fvg~~f  160 (260)
                      +++||||+||||||++++|++|||||||||+||||||+|||||||+++|+|||+||+|||+++|+|||||||+|||||+|
T Consensus        81 ~~~gavP~yLLDRe~q~~ak~ls~~iKQkRkeKa~K~~VPlPkvr~~~e~E~fkVi~tgK~k~k~WKRmvTk~tFVg~~F  160 (260)
T KOG3163|consen   81 TPQGAVPAYLLDREQQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQSETEVFKVIRTGKRKKKAWKRMVTKVTFVGDGF  160 (260)
T ss_pred             CCCCCcchhhhchhhhhHHHHHHHHHHHHHHhhcccccccCcccccccHHHHHHHHhcCccchhHHHhhhheeeeecCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcccccccccceeeeEEEEcCCCCeEEEEEeeeeeeCCCCCCceeeccceeceEEEEcccccccccCCCceecce
Q 024952          161 TRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK  240 (260)
Q Consensus       161 trkppk~erfirp~aLR~~kANVt~Pelk~T~klkIi~VkkNPSNneyvR~niITKGTIIEVnvSeLG~vT~~GkvvwGk  240 (260)
                      ||+|||||||||||||||++|||||||+++||+++|++|++|||||+|+.+|+|||||||||||||||+||++|+||||+
T Consensus       161 TRkPpKyERfIRPm~lRfkkAhVthpEL~~Tf~LpIigvKKNP~sp~yT~LGvitkGTviEvnVseLGlVt~~GkvvWGK  240 (260)
T KOG3163|consen  161 TRKPPKYERFIRPMGLRFKKAHVTHPELKVTFCLPIIGVKKNPSSPMYTSLGVITKGTVIEVNVSELGLVTQGGKVVWGK  240 (260)
T ss_pred             ccCCchHhhhhchhhhhhhhccccChhhceEEEeeeeEeccCCCCcceeecceeecceEEEEeccccceeccCceEEeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEccCCCCceeeeeEEcC
Q 024952          241 YAQVTNNPENDGCINAVLLV  260 (260)
Q Consensus       241 YAqVTSRPGQDG~iNavLLv  260 (260)
                      ||||||+|++||||||||||
T Consensus       241 yAQvTNnPenDGciNAvLLv  260 (260)
T KOG3163|consen  241 YAQVTNNPENDGCINAVLLV  260 (260)
T ss_pred             hhhccCCccccceeeeEEeC
Confidence            99999999999999999997

>PTZ00388 40S ribosomal protein S8-like; Provisional

Probab=100.00  E-value=2.2e-121  Score=806.38  Aligned_cols=223  Identities=76%  Similarity=1.185  Sum_probs=221.0

Q ss_pred             HHHHhcccchhhhhhhhHHHHHHhHHHHHhhhhhcccCCCCCCCCCCCCCceeecccCccchhhhhHHHHHHhhhhhccc
Q 024952           38 IAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKW  117 (260)
Q Consensus        38 ~a~~l~g~kakl~~k~r~~eki~mkk~i~~he~~~~k~~~~~~~~~~a~p~ylldr~~~~~ak~lsn~ikqkrkeka~k~  117 (260)
                      +||+|+||||||||++||+|||||||+|++|||++++++++++.++||||+|||||+++++||+|||||||||+||||||
T Consensus         1 ~a~~l~g~kaKl~~k~r~~eK~~mkk~ik~hee~~~k~~~~~~~~~~a~p~ylldr~~~~~ak~lsn~iKqkrkeka~k~   80 (223)
T PTZ00388          1 KAQKLRGIKAKLFNKKRYAEKAEMKKTIKAHEEKDVKEKVPEKVPDGAVPSYLLDREQVNRAKVLSNMLKQKRKEKAGKW   80 (223)
T ss_pred             CchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhccCCCCcCCCCCCCccceeCCCCcchhHHHHHHHHHHHHhhcccc
Confidence            48999999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             cccCCccccCcchhhheeeecCccccccccccceeeeeeCCCCccCCCCcccccccccceeeeEEEEcCCCCeEEEEEee
Q 024952          118 EVPLPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEII  197 (260)
Q Consensus       118 ~vplpkv~~~~e~e~fkv~~tgk~~~k~wkrmvtk~~fvg~~ftrkppk~erfirp~aLR~~kANVt~Pelk~T~klkIi  197 (260)
                      +||||||++|+|+|||+||+||||++|+|||||||+||||||||||||||||||||||||+++|||+||+++.|++++|+
T Consensus        81 ~vplpkv~~~~e~E~fkv~~tGk~~~k~WkRmvtk~tfvg~~ftrkppk~erfiRp~glr~~~AnVt~p~~~~t~~~kIi  160 (223)
T PTZ00388         81 DVPIPKVKAMNEDEMFKVVKSGKRKKKSWKRLVNKVTFVGEDFTRKPPKYERFIRPTGLRFKKAHVTHPELKTTFYLDII  160 (223)
T ss_pred             ccccccccccCHHHHhHhhhcCCccccchhheeccceecCCCcccCCcccccccccchhhcceeEEeccccCcEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeCCCCCCceeeccceeceEEEEcccccccccCCCceecceeeEEccCCCCceeeeeEEcC
Q 024952          198 GVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV  260 (260)
Q Consensus       198 ~VkkNPSNneyvR~niITKGTIIEVnvSeLG~vT~~GkvvwGkYAqVTSRPGQDG~iNavLLv  260 (260)
                      +|++||+|++|+|+|+||||||||+|+|+||++|++|+|+||+||||||||||||||||||||
T Consensus       161 ~V~kNPan~~Ytr~nvITKGTIIEtnvselG~vt~~gkvvwgkyAqVTsrPgQDG~VNAVLLv  223 (223)
T PTZ00388        161 GVKKNPQSNLYTSLGVITKGTIIEVNVSELGLVTQTGKVVWGKYAQVTNNPENDGCINAVLLV  223 (223)
T ss_pred             EEeeCCCChhhhhcCceeeeeEEEeehhhhccccccCceeeeeeEEEecCCCcCceeeEEEeC
Confidence            999999999999999999999999999999999999999999999999999999999999997

>PF01201 Ribosomal_S8e: Ribosomal protein S8e; InterPro: IPR022309 A number of eukaryotic and archaeal ribosomal proteins have been grouped based on sequence similarities []

Probab=100.00  E-value=4.4e-45  Score=302.77  Aligned_cols=132  Identities=44%  Similarity=0.595  Sum_probs=106.2

Q ss_pred             CCChhHHHHHHHhcCCCCChHHHHHhHHHHHHhHhhHHHHHhcccchhhhhhhhHHHHHHhHHHHHhhhhhcccCCCCCC
Q 024952            1 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDE   80 (260)
Q Consensus         1 mpqne~ie~h~k~~g~rld~~er~rkk~ar~~h~~s~~a~~l~g~kakl~~k~r~~eki~mkk~i~~he~~~~k~~~~~~   80 (260)
                      |||++|++.|+|.+|.|+|+++++||.|++.+                                                
T Consensus         1 M~i~~~~~~krk~tGgr~~~~rkKRK~e~Gr~------------------------------------------------   32 (132)
T PF01201_consen    1 MGINQGIRHKRKKTGGRRDPHRKKRKYELGRP------------------------------------------------   32 (132)
T ss_dssp             --EE--CCCSEETTTEE----S---GGGEE--------------------------------------------------
T ss_pred             CCcchhhhhhhCCCcCcCCHHHHhHHHHhccc------------------------------------------------
Confidence            99999999999999999999999999999877                                                


Q ss_pred             CCCCCCCceeecccCccchhhhhHHHHHHhhhhhccccccCCccccCcchhhheeeecCccccccccccceeeeeeCCCC
Q 024952           81 VQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPLPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGF  160 (260)
Q Consensus        81 ~~~~a~p~ylldr~~~~~ak~lsn~ikqkrkeka~k~~vplpkv~~~~e~e~fkv~~tgk~~~k~wkrmvtk~~fvg~~f  160 (260)
                          |.|+||        +.+|+++|+++|                         ++.|+.|.+                
T Consensus        33 ----p~~t~l--------g~~~~~~ik~~R-------------------------~rGGn~K~r----------------   59 (132)
T PF01201_consen   33 ----PANTKL--------GEVLSNRIKQVR-------------------------VRGGNRKIR----------------   59 (132)
T ss_dssp             -------BEE--------SC-C-HEEEEEE-------------------------TSSS-EEEE----------------
T ss_pred             ----ccccEE--------ccccceeEEEEE-------------------------ccCCcEeee----------------
Confidence                778888        778889999988                         788888876                


Q ss_pred             ccCCCCcccccccccceeeeEEEEcCCCCeEEEEEeeeeeeCCCCCCceeeccceeceEEEEcccccccccCCCceecce
Q 024952          161 TRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK  240 (260)
Q Consensus       161 trkppk~erfirp~aLR~~kANVt~Pelk~T~klkIi~VkkNPSNneyvR~niITKGTIIEVnvSeLG~vT~~GkvvwGk  240 (260)
                                    +||+++|||+||+++.|++++|++|+||||||+|+|+|+|||||||++|+||||.           
T Consensus        60 --------------~lr~~~anv~~~~~~~t~k~~I~~V~~Npan~~~vR~~iitKGaII~~d~s~lg~-----------  114 (132)
T PF01201_consen   60 --------------ALRLDYANVSWPSEGKTKKVKIISVVYNPANNEYVRRNIITKGAIIETDVSELGY-----------  114 (132)
T ss_dssp             --------------ECCESEEEEEETTTTEEEEEEEEEECSSSSTHHHHHTTBB-TT-EEEEESHTSSE-----------
T ss_pred             --------------eeeecccEEEecccCceEEeeeEEEEEcCCChhhhhcCceecceEEEEeecccce-----------
Confidence                          8999999999999999999999999999999999999999999999999999994           


Q ss_pred             eeEEccCCCCceeeeeEEc
Q 024952          241 YAQVTNNPENDGCINAVLL  259 (260)
Q Consensus       241 YAqVTSRPGQDG~iNavLL  259 (260)
                       |+||||||||||||||||
T Consensus       115 -A~vtSRPGQdG~vnavLl  132 (132)
T PF01201_consen  115 -ARVTSRPGQDGVVNAVLL  132 (132)
T ss_dssp             -EEEESEHHHHSCEEEEEE
T ss_pred             -EEEEeCCCCcceeeEEEC
Confidence             999999999999999997

One of these families, S8e, consists of a number of proteins with either about 220 amino acids (in eukaryotes) or about 125 amino acids (in archaea). This entry also contains proteins annotated as NSA2, which are though to be involved in ribosomal biogenesis of the 60S ribosomal subunit, having a role in the quality control of pre-60S particles. They are a component of the pre-66S ribosomal particle. ; PDB: 2KCY_A 2KCP_A 3U5G_I 3U5C_I 2KCO_A 2XZM_2 2XZN_2.

>COG2007 RPS8A Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.5e-41  Score=278.16  Aligned_cols=127  Identities=42%  Similarity=0.564  Sum_probs=119.4

Q ss_pred             CCChhHHHHHHHhcCCCCChHHHHHhHHHHHHhHhhHHHHHhcccchhhhhhhhHHHHHHhHHHHHhhhhhcccCCCCCC
Q 024952            1 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDE   80 (260)
Q Consensus         1 mpqne~ie~h~k~~g~rld~~er~rkk~ar~~h~~s~~a~~l~g~kakl~~k~r~~eki~mkk~i~~he~~~~k~~~~~~   80 (260)
                      || +.+.+.++|-+|. +|++.|+++|                                                     
T Consensus         1 M~-~~qg~~~rk~tGg-~~~~~RkKrK-----------------------------------------------------   25 (127)
T COG2007           1 MG-IWQGRSKRKPTGG-KRHQARKKRK-----------------------------------------------------   25 (127)
T ss_pred             CC-ccccccccCCccc-chhhhhhhhh-----------------------------------------------------
Confidence            88 8999999999999 8998887776                                                     


Q ss_pred             CCCCCCCceeecccCccchhhhhHHHHHHhhhhhccccccCCccccCcchhhheeeecCccccccccccceeeeeeCCCC
Q 024952           81 VQEGAVPAYLLDRENTTRAKVLSNTIKQKRKEKAGKWEVPLPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKATFVGPGF  160 (260)
Q Consensus        81 ~~~~a~p~ylldr~~~~~ak~lsn~ikqkrkeka~k~~vplpkv~~~~e~e~fkv~~tgk~~~k~wkrmvtk~~fvg~~f  160 (260)
                              |+||||                           |....|+|                 ++|+++++|+|.+|
T Consensus        26 --------~elGre---------------------------P~~t~ige-----------------~~~~~~vr~rGgn~   53 (127)
T COG2007          26 --------FELGRE---------------------------PTETKIGE-----------------KRKRKKVRTRGGNF   53 (127)
T ss_pred             --------hhcCCC---------------------------CcccccCc-----------------cceEEEEEeecCCe
Confidence                    999999                           89999999                 89999999999999


Q ss_pred             ccCCCCcccccccccceeeeEEEEcCCCCeEEEEEeeeeeeCCCCCCceeeccceeceEEEEcccccccccCCCceecce
Q 024952          161 TRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK  240 (260)
Q Consensus       161 trkppk~erfirp~aLR~~kANVt~Pelk~T~klkIi~VkkNPSNneyvR~niITKGTIIEVnvSeLG~vT~~GkvvwGk  240 (260)
                      +++           +||+++|||+||+++.+++++|++|++||||++|+|+|||||||||++|   +           | 
T Consensus        54 K~r-----------~~~~~~aNV~~p~~g~~~k~~Ii~V~~nPan~~y~rrniitKGaiI~t~---~-----------G-  107 (127)
T COG2007          54 KVR-----------ALRAKTANVSDPETGKTKKAKIIGVVENPANPEYVRRNIITKGAIIETE---I-----------G-  107 (127)
T ss_pred             EEE-----------EEEeccceecccccCcEEEEEEEEEEcCCCChHHhhccceecceEEEEe---e-----------e-
Confidence            998           9999999999999999999999999999999999999999999999955   2           3 


Q ss_pred             eeEEccCCCCceeeeeEEcC
Q 024952          241 YAQVTNNPENDGCINAVLLV  260 (260)
Q Consensus       241 YAqVTSRPGQDG~iNavLLv  260 (260)
                      ||+||||||||||||||||.
T Consensus       108 ~A~VTsRPgQdG~vNavLl~  127 (127)
T COG2007         108 YAVVTSRPGQDGVVNAVLLE  127 (127)
T ss_pred             EEEEecCCCccceeEEEEeC
Confidence            69999999999999999984

>PRK04049 30S ribosomal protein S8e; Validated

Probab=99.96  E-value=1.2e-30  Score=216.41  Aligned_cols=70  Identities=46%  Similarity=0.678  Sum_probs=67.6

Q ss_pred             cceeeeEEEEcCCCCeEEEEEeeeeeeCCCCCCceeeccceeceEEEEcccccccccCCCceecceeeEEccCCCCceee
Q 024952          175 GLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCI  254 (260)
Q Consensus       175 aLR~~kANVt~Pelk~T~klkIi~VkkNPSNneyvR~niITKGTIIEVnvSeLG~vT~~GkvvwGkYAqVTSRPGQDG~i  254 (260)
                      +||+++|||+||+++.|++++|++|+||||||+|+|+|||||||||+   ||+|+            |+|||||||||||
T Consensus        56 ~lr~~~~Nv~~~~~~~tkk~kI~~Vv~N~aN~~yvRrniitKGaII~---te~G~------------A~VTSRPGQdG~v  120 (127)
T PRK04049         56 LLRANYANVADPKTGKTKKVKILTVVENPANPHYARRNIITKGAIIE---TELGK------------AKVTSRPGQDGVV  120 (127)
T ss_pred             EEEecceEEeecccCeEEEEEEEEEEECCCCHHHhhcCCEecceEEE---eccce------------EEEecCCCcCceE
Confidence            79999999999999999999999999999999999999999999999   66666            9999999999999


Q ss_pred             eeEEc
Q 024952          255 NAVLL  259 (260)
Q Consensus       255 NavLL  259 (260)
                      |||||
T Consensus       121 NavLi  125 (127)
T PRK04049        121 NAVLI  125 (127)
T ss_pred             EEEEe
Confidence            99997

>TIGR00307 S8e ribosomal protein S8

Probab=99.96  E-value=1.2e-30  Score=216.20  Aligned_cols=70  Identities=44%  Similarity=0.692  Sum_probs=66.4

Q ss_pred             cceeeeEEEEcCCCCeEEEEEeeeeeeCCCCCCceeeccceeceEEEEcccccccccCCCceecceeeEEccCCCCceee
Q 024952          175 GLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCI  254 (260)
Q Consensus       175 aLR~~kANVt~Pelk~T~klkIi~VkkNPSNneyvR~niITKGTIIEVnvSeLG~vT~~GkvvwGkYAqVTSRPGQDG~i  254 (260)
                      +||+++|||+||+++.|++++|++|+||||||+|+|+|||||||||+   +++|            ||+|||||||||||
T Consensus        56 alr~~~~Nv~~~~~~~t~k~kIl~Vv~NpaN~~yvR~niitKGaIIe---td~g------------~A~VTsrPgQdG~v  120 (127)
T TIGR00307        56 LLRDETANVSDPETGKVKKVEIAGVVENPANNHYVRRNVITKGAIVE---TDIG------------YARVTSRPGQDGVV  120 (127)
T ss_pred             EEEeeeeEEecccCCeEEEEEEEEEEECCCCHHHhhcCcEecceEEE---Eeee------------EEEEecCCCcCceE
Confidence            79999999999999999999999999999999999999999999999   3344            49999999999999


Q ss_pred             eeEEc
Q 024952          255 NAVLL  259 (260)
Q Consensus       255 NavLL  259 (260)
                      |||||
T Consensus       121 Navll  125 (127)
T TIGR00307       121 NGVLI  125 (127)
T ss_pred             eEEEe
Confidence            99997

e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not.

>PTZ00148 40S ribosomal protein S8; Provisional

Probab=99.94  E-value=4.8e-27  Score=207.43  Aligned_cols=85  Identities=16%  Similarity=0.277  Sum_probs=73.8

Q ss_pred             cceeeeEEEEcCCCCeEEEEEeeeeeeCCCCCCceeeccceeceEEEEccccccc------ccCCCc-------------
Q 024952          175 GLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGL------VTPAGK-------------  235 (260)
Q Consensus       175 aLR~~kANVt~Pelk~T~klkIi~VkkNPSNneyvR~niITKGTIIEVnvSeLG~------vT~~Gk-------------  235 (260)
                      +||++.|||+||+.++|.+++|++|+||||||+|+|+|||||||||++|++||-.      ..+.|+             
T Consensus        57 alr~~~gNv~~~se~~tkk~kIl~Vv~N~sNne~vRrniitKGAII~tda~Pfrqwy~~hy~~~lg~kk~~~~~~~~~~~  136 (205)
T PTZ00148         57 ALRLDTGNFSWGSQGIAKKTRILDVVYNASNNELVRTKTLVKNAIVQIDAAPFKQWYAKHYGIDLGKKKKYKKEEENKKA  136 (205)
T ss_pred             EEeecceEEeecCCCeEEeeEEEEEEecCcCHHHHhhcceeeceEEeeccchHHHHHHHhhCcccccccccccchhhhhh
Confidence            7999999999999999999999999999999999999999999999999888652      000111             


Q ss_pred             ----------------------ee-----cc-eeeEEccCCCCceeeeeEEc
Q 024952          236 ----------------------VV-----WG-KYAQVTNNPENDGCINAVLL  259 (260)
Q Consensus       236 ----------------------vv-----wG-kYAqVTSRPGQDG~iNavLL  259 (260)
                                            .+     -| +||+|||||||+|.+||+||
T Consensus       137 ~k~s~~~~kk~~~r~~~~~~~~~leeqf~~GrllA~IsSRPGQ~Gr~dGyIL  188 (205)
T PTZ00148        137 KKKSESLVAKLEVRKKNHKIDKALLEQFQSGRLLARISSRPGQSGRADGYIL  188 (205)
T ss_pred             hhhhHHHHHHHHHhhhhccccHHHHHHHhhCeEEEEEeCCCCCccceeEEEE
Confidence                                  01     26 89999999999999999998

>KOG3283 consensus 40S ribosomal protein S8 [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=9.9e-23  Score=177.69  Aligned_cols=85  Identities=18%  Similarity=0.302  Sum_probs=74.0

Q ss_pred             cceeeeEEEEcCCCCeEEEEEeeeeeeCCCCCCceeeccceeceEEEEccccccc---------------ccC-------
Q 024952          175 GLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGL---------------VTP-------  232 (260)
Q Consensus       175 aLR~~kANVt~Pelk~T~klkIi~VkkNPSNneyvR~niITKGTIIEVnvSeLG~---------------vT~-------  232 (260)
                      |||++.|||+|.++++|.+++|++|+|||||||+||+|+|||+|||.||++|+-.               ++.       
T Consensus        57 ALRlD~Gnfsw~Se~~trktri~dvvY~~snneLVRT~TL~k~aiV~ida~Pfrqwyeshy~~~lg~kk~~~~~~k~sk~  136 (200)
T KOG3283|consen   57 ALRLDMGNFSWGSEGTTRKTRILDVVYHPSNNELVRTNTLTKSAIVQIDAAPFRQWYESHYGLPLGRKKNKILNKKKSKH  136 (200)
T ss_pred             eeeeccCcccccccceeeeeeeeeeEecCCccceeeecchhhceEEEeccchHHHHHHHhhccccccccCccccchhhHH
Confidence            8999999999999999999999999999999999999999999999999998751               000       


Q ss_pred             -------------CCcee---c--c-eeeEEccCCCCceeeeeEEc
Q 024952          233 -------------AGKVV---W--G-KYAQVTNNPENDGCINAVLL  259 (260)
Q Consensus       233 -------------~Gkvv---w--G-kYAqVTSRPGQDG~iNavLL  259 (260)
                                   .+..+   |  | +||+|+|||||.|.+||++|
T Consensus       137 ~~rk~~~r~~~a~vds~l~eqF~~GrL~A~isSrpGQ~Gradgyil  182 (200)
T KOG3283|consen  137 VQRKYAERQKNAKVDSSLEEQFAAGRLYACISSRPGQCGRADGYIL  182 (200)
T ss_pred             HHHHHHHhhccccccHHHHHHHhcCcEEEEEeCCCCcccccceeee
Confidence                         01001   1  6 99999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	260
2kcp_A	98	30S ribosomal protein S8E; RPS8E, beta, NESG, ribo	5e-21
2kco_A	133	30S ribosomal protein S8E; ribosomal protein of un	2e-16

>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A Length = 98

 Score = 84.1 bits (208), Expect = 5e-21
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 22/102 (21%)

Query: 165 PKYERFIRPSG-------LRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKG 217
            +  R IR  G          T+ +V  PE       EI  V +N   P +    +IT+G
Sbjct: 2   DRRVRLIRTRGGNTKVRLASDTRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRG 61

Query: 218 TIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLL 259
            ++E         T  G        +VT+ P  DG IN VL+
Sbjct: 62  AVVE---------TNLGN------VRVTSRPGQDGVINGVLI 88

>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2} Length = 133

 Score = 73.0 bits (179), Expect = 2e-16
 Identities = 28/136 (20%), Positives = 42/136 (30%), Gaps = 34/136 (25%)

Query: 137 RSGKRRTKQWKRMVTKA------TFVGPGFTRKPPKYERFIRPSG-------LRFTKAHV 183
            +G  + K   +   +       T +     R         R  G          T A+V
Sbjct: 12  ITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIK------DRTLGGNFKVRLKYTTTANV 65

Query: 184 THPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQ 243
             P       ++I+ + + P        G+I +G  I                     A 
Sbjct: 66  LDPATNTAKKVKILEILETPANKELARRGIIIRGAKIRTEAGL---------------AV 110

Query: 244 VTNNPENDGCINAVLL 259
           VT+ P  DG INAVLL
Sbjct: 111 VTSRPGQDGVINAVLL 126

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	260
2kcp_A	98	30S ribosomal protein S8E; RPS8E, beta, NESG, ribo	99.97
2kco_A	133	30S ribosomal protein S8E; ribosomal protein of un	99.97
3j20_J	127	30S ribosomal protein S8E; archaea, archaeal, KINK	99.96
2xzm_2	208	40S ribosomal protein S8; ribosome, translation; 3	99.92
3u5c_I	200	RP19, S14, YS9, 40S ribosomal protein S8-A; transl	99.91

>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A

Probab=99.97  E-value=1.4e-32  Score=218.37  Aligned_cols=71  Identities=34%  Similarity=0.482  Sum_probs=67.5

Q ss_pred             cceeeeEEEEcCCCCeEEEEEeeeeeeCCCCCCceeeccceeceEEEEcccccccccCCCceecceeeEEccCCCCceee
Q 024952          175 GLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCI  254 (260)
Q Consensus       175 aLR~~kANVt~Pelk~T~klkIi~VkkNPSNneyvR~niITKGTIIEVnvSeLG~vT~~GkvvwGkYAqVTSRPGQDG~i  254 (260)
                      +||+++|||+||++++|++++|++|+||||||+|+|+|||||||||++|         .|+      |+|||||||||||
T Consensus        19 alr~~~aNv~~~~~~~t~k~~Ii~Vv~NpsN~~yvR~n~ltKGaII~~d---------~Gk------A~VTSRPGQdG~v   83 (98)
T 2kcp_A           19 LASDTRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRGAVVETN---------LGN------VRVTSRPGQDGVI   83 (98)
T ss_dssp             TTSCCCEEEECTTTCCEEEECEEESSCSCSSCTTCCSSCCCTTCEEEES---------SSE------EEECSCTTGGGSC
T ss_pred             EEEeeeEEEEecccCeEEEEEEEEEEECCCChHHeecccEEeeeEEEec---------CcE------EEEecCCCCccEE
Confidence            7999999999999999999999999999999999999999999999955         444      9999999999999


Q ss_pred             eeEEcC
Q 024952          255 NAVLLV  260 (260)
Q Consensus       255 NavLLv  260 (260)
                      |||||+
T Consensus        84 navlL~   89 (98)
T 2kcp_A           84 NGVLIR   89 (98)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999985

>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2}

Probab=99.97  E-value=1.6e-31  Score=221.83  Aligned_cols=79  Identities=32%  Similarity=0.423  Sum_probs=72.6

Q ss_pred             ccccccccc-------ceeeeEEEEcCCCCeEEEEEeeeeeeCCCCCCceeeccceeceEEEEcccccccccCCCceecc
Q 024952          167 YERFIRPSG-------LRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWG  239 (260)
Q Consensus       167 ~erfirp~a-------LR~~kANVt~Pelk~T~klkIi~VkkNPSNneyvR~niITKGTIIEVnvSeLG~vT~~GkvvwG  239 (260)
                      --+++|.+|       ||+++|||+||++++|++++|++|+||||||+|+|+|||||||||++|   +|           
T Consensus        42 ~~~~vR~rGGN~K~r~lr~~~~nv~~~~~~~t~k~~I~~Vv~Npsn~~yvR~n~itKGaII~~~---lG-----------  107 (133)
T 2kco_A           42 IRIKDRTLGGNFKVRLKYTTTANVLDPATNTAKKVKILEILETPANKELARRGIIIRGAKIRTE---AG-----------  107 (133)
T ss_dssp             HHHHHHTCCCCCCCCCCCCCEEEEEETTTTEEEEEEEEEECSCCTTHHHHTTTCCCTTCEEEES---SS-----------
T ss_pred             EEEEEeccCCceeeeEeeeeeEEEEecccCeEEEEEEEEEEECCCChhheecccEeeeeEEEEe---Cc-----------
Confidence            345677765       999999999999999999999999999999999999999999999955   55           


Q ss_pred             eeeEEccCCCCceeeeeEEcC
Q 024952          240 KYAQVTNNPENDGCINAVLLV  260 (260)
Q Consensus       240 kYAqVTSRPGQDG~iNavLLv  260 (260)
                       ||+||||||||||||||||.
T Consensus       108 -~A~VtSRPGQdG~vnavlle  127 (133)
T 2kco_A          108 -LAVVTSRPGQDGVINAVLLK  127 (133)
T ss_dssp             -EEEEEEEECTTSBEEEEECS
T ss_pred             -eEEEecCCCCcceEEEEEEe
Confidence             59999999999999999984

>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.96  E-value=3.4e-31  Score=218.14  Aligned_cols=69  Identities=38%  Similarity=0.513  Sum_probs=67.0

Q ss_pred             cceeeeEEEEcCCCCeEEEEEeeeeeeCCCCCCceeeccceeceEEEEcccccccccCCCceecceeeEEccCCCCceee
Q 024952          175 GLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCI  254 (260)
Q Consensus       175 aLR~~kANVt~Pelk~T~klkIi~VkkNPSNneyvR~niITKGTIIEVnvSeLG~vT~~GkvvwGkYAqVTSRPGQDG~i  254 (260)
                      +||+++|||+| ++++|++++|++|+||||||+|+|+|+|||||||+   ||+|+            |+|||||||||||
T Consensus        57 alr~~~aNvs~-s~~~t~k~~Ii~Vv~NpsN~~yvR~n~itKGaIIe---te~G~------------a~vtsrPgqdG~v  120 (127)
T 3j20_J           57 LTAAAYANVFD-KSGKGRKVRIIRVIENPANRQFARRNIITKGAIIE---TEIGK------------AKVTSRPGQDGVV  120 (127)
T ss_dssp             EEEESBCCCCC-SSCCCCCCBBCCCCCCSSCSHHHHHTCCCSSCEEE---BSSSE------------EEECSCSSSSCCC
T ss_pred             EEEeccceEEe-ecCCEEEEEEEEEEECCCChhheEeccEecceEEE---EcCce------------EEEecCCccCceE
Confidence            69999999999 99999999999999999999999999999999999   77776            9999999999999


Q ss_pred             eeEEc
Q 024952          255 NAVLL  259 (260)
Q Consensus       255 NavLL  259 (260)
                      |||||
T Consensus       121 Navll  125 (127)
T 3j20_J          121 NAILL  125 (127)
T ss_dssp             CEEEC
T ss_pred             EEEEe
Confidence            99998

>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2

Probab=99.92  E-value=2.5e-26  Score=201.89  Aligned_cols=85  Identities=20%  Similarity=0.249  Sum_probs=74.7

Q ss_pred             cceeeeEEEEcCCCCeEEEEEeeeeeeCCCCCCceeeccceeceEEEEccccccc---------------ccC-------
Q 024952          175 GLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGL---------------VTP-------  232 (260)
Q Consensus       175 aLR~~kANVt~Pelk~T~klkIi~VkkNPSNneyvR~niITKGTIIEVnvSeLG~---------------vT~-------  232 (260)
                      +||++.|||+||+.+.|.+++|++|+||||||||+|+|||||||||++|++||-.               .+.       
T Consensus        65 alrl~~gNfsw~se~~trK~kIl~VvyN~sNnelvRtntLtKgAIV~tDa~Pfrqwye~hy~~~lg~kk~~~~~~~~k~s  144 (208)
T 2xzm_2           65 ALRLCEGNFSWGSENITRKTKILDVKYNATNNELVRTKTLVKNSIVEIDSTPFREWYKLHYGIDLGLKKDRTVLGNKEKS  144 (208)
T ss_dssp             EEEESEEEEEETTTTEEEEEEEEEECCCSSCSHHHHTTCCCTTCEEEEESHHHHHHHHHHHSBCCSSGGGCBCCCSCCSS
T ss_pred             eeecceeEEEecCCCeEEEEEEEEEEecCcchHHHhhcccccccEEEccCchhHHHHHHhcCcccccccccccccchhhh
Confidence            7999999999999999999999999999999999999999999999999998641               000       


Q ss_pred             --------------CCceec-----c-eeeEEccCCCCceeeeeEEc
Q 024952          233 --------------AGKVVW-----G-KYAQVTNNPENDGCINAVLL  259 (260)
Q Consensus       233 --------------~Gkvvw-----G-kYAqVTSRPGQDG~iNavLL  259 (260)
                                    ..+.+.     | +||+|||||||.|.+||+||
T Consensus       145 ~~~~kk~~r~~~~~~~~~l~eqf~~GrllA~isSRPGQ~GradGyiL  191 (208)
T 2xzm_2          145 RHVQKRVKRTKAQALEKNIEEQFVSQRILACITSRPGQSGRADGYIL  191 (208)
T ss_dssp             TTHHHHHHHTTTCCCCHHHHHHHHHSEEEEEECSCHHHHSCCEEEEC
T ss_pred             HHHHHHHHHhhhccccHHHHHHHhhCcEEEEEecCCCCcccccEEEE
Confidence                          122233     6 99999999999999999998

>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I

Probab=99.91  E-value=1.8e-26  Score=202.05  Aligned_cols=85  Identities=20%  Similarity=0.368  Sum_probs=73.5

Q ss_pred             cceeeeEEEEcCCCCeEEEEEeeeeeeCCCCCCceeeccceeceEEEEccccccc---------c---------------
Q 024952          175 GLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGL---------V---------------  230 (260)
Q Consensus       175 aLR~~kANVt~Pelk~T~klkIi~VkkNPSNneyvR~niITKGTIIEVnvSeLG~---------v---------------  230 (260)
                      +||++.|||+||++++|++++|++|+||||||+|+|+|||||||||++|+|||-.         +               
T Consensus        57 alr~d~~N~s~~se~~tkK~kI~~Vv~N~sNne~vRrn~LtKGaII~tDatPfrqwy~~hy~~~lg~kk~~~~~~~~k~s  136 (200)
T 3u5c_I           57 ALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNVKEEETVAKS  136 (200)
T ss_dssp             ESSBCEEEEEEGGGTEEEEEECCEEEECSSCHHHHHTTCBCTTCEEECCCHHHHHHHHHHSSCCSCCC-----------C
T ss_pred             eEeeceeEEEeCCCCeEEEEeEEEEEEcCCChHhhhccceecceEEEccCchhhHHHHhhhCcccccccccchhhhhhhh
Confidence            7999999999999999999999999999999999999999999999999996441         0               


Q ss_pred             ----------cCCCce---ec-----c-eeeEEccCCCCceeeeeEEc
Q 024952          231 ----------TPAGKV---VW-----G-KYAQVTNNPENDGCINAVLL  259 (260)
Q Consensus       231 ----------T~~Gkv---vw-----G-kYAqVTSRPGQDG~iNavLL  259 (260)
                                ....++   +-     | +||+|||||||.|.+||+||
T Consensus       137 ~~~~~k~~~r~~~~~i~~~leeqf~~GrllA~isSRPGQ~GradGyiL  184 (200)
T 3u5c_I          137 KNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYIL  184 (200)
T ss_dssp             SHHHHHHHHSCSSCCCCHHHHHHHHTTCCEEEECSCHHHHSCCCEEEC
T ss_pred             HHHHHHHHHHHhhCCcCHHHHHHHhhCcEEEEEecCCCCccccceeEE
Confidence                      001111   11     6 99999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00