Citrus Sinensis ID: 024979

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVH
Secondary Structure (PSIPRED)
ccccEEccccEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccEEcccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccEEEEEEEcccEEEEcccccccccHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEcccccccccHHHHHHHccHEEEcEcccccccEHHHHEccccEcccHHHHcccccEEEEHEEccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEccEEEEEEcccccccccHHHHHHcccccccccccccEEEcc
Coil and Loop (DISEMBL)
MVQVLSLStlttsgnggfygspalWRRHFKLLEksrigidrpcfchqfVQGLHLRVTFNLLRQRNLRANAgwlfkggsdrgldassersesanEDILFFFFQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAkrglsskseAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVicgmdpvccessswMEIAQVEKlqqgpsqpfyqvh
Flexible Loop (DISEMBL)
MVQVLSLStlttsgnggfygspaLWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQleakrglsskseaqDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKlqqgpsqpfyqvh
Low Complexity Region (SEG)
MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKleaeslaasatalafenaRFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVH
Disordered region (IsUnstruct)
*********LTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKG******************DILFFFFQLDLATRVQCALNMEEYDIAQQLR******************************LSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQV***************
Disordered Region (DISOPRED)
****************GFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLR***************GW*********************EDILFFFFQLDLATRVQCALNMEEYDIAQQLRN******************************SIIRLRADLQKAIDSENYALAADLRD*************************FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKL*QGPSQPFYQV*
Disordered Region (DISEMBL)
MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKGGS************SANEDILFFFFQLDLATRVQCALNMEEYDIAQQLRNKLTEVEE*******************DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVH
Disordered Region (DISPRO)
MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKGG*************SANEDILFFFFQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAK****SKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q8VDH1	627	F-box only protein 21 OS=	yes	no	0.196	0.081	0.392	4e-05
Q5R5S1	621	F-box only protein 21 OS=	yes	no	0.196	0.082	0.392	5e-05
O94952	628	F-box only protein 21 OS=	yes	no	0.196	0.081	0.392	5e-05

>sp|Q8VDH1|FBX21_MOUSE F-box only protein 21 OS=Mus musculus GN=Fbxo21 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
           + +G  + HK +GY  VI G DP C     W+    V  L  G  QPFY V
Sbjct: 503 YSIGLVMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNV 553

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.
Mus musculus (taxid: 10090)

>sp|Q5R5S1|FBX21_PONAB F-box only protein 21 OS=Pongo abelii GN=FBXO21 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
           + +G  + HK +GY  VI G DP C     W+    V  L  G  QPFY V
Sbjct: 496 YSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNV 546

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Pongo abelii (taxid: 9601)

>sp|O94952|FBX21_HUMAN F-box only protein 21 OS=Homo sapiens GN=FBXO21 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
           + +G  + HK +GY  VI G DP C     W+    V  L  G  QPFY V
Sbjct: 503 YSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNV 553

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
147818712	1072	hypothetical protein VITISV_009461 [Viti	0.996	0.240	0.719	1e-100
225423547	340	PREDICTED: uncharacterized protein LOC10	0.996	0.758	0.719	1e-100
255542114	336	DNA binding protein, putative [Ricinus c	0.980	0.755	0.712	1e-95
449452875	336	PREDICTED: uncharacterized protein LOC10	0.992	0.764	0.619	3e-85
356499859	327	PREDICTED: uncharacterized protein LOC10	0.969	0.767	0.676	1e-83
42568906	330	uvrB/uvrC motif-containing protein [Arab	0.984	0.772	0.644	2e-83
297817996	331	hypothetical protein ARALYDRAFT_904615 [	0.984	0.770	0.646	3e-83
357487407	300	F-box only protein [Medicago truncatula]	0.969	0.836	0.639	2e-79
356494893	303	PREDICTED: uncharacterized protein LOC10	0.764	0.653	0.755	1e-74
125527819	275	hypothetical protein OsI_03852 [Oryza sa	0.741	0.698	0.712	4e-74

>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/260 (71%), Positives = 213/260 (81%), Gaps = 2/260 (0%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRI--GIDRPCFCHQFVQGLHLRVTF 58
           MVQ +S+STLTTSGNGG YGS ALW RHF+L+ K++I  G +R    H   Q L      
Sbjct: 1   MVQCVSVSTLTTSGNGGVYGSTALWGRHFQLMRKTQIRTGSERNFLWHHCAQRLFFAGQL 60

Query: 59  NLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEY 118
            + RQRNLR  AGWLFKGG D+GLDASSE SESANEDIL FFFQLDLATRVQ ALN E+Y
Sbjct: 61  VMQRQRNLRVEAGWLFKGGGDQGLDASSECSESANEDILIFFFQLDLATRVQYALNTEQY 120

Query: 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
           +IAQQLR+KLTEVE E+ +Q EAKRG +SKSEAQDKALS+IRLRADLQKAI++ENYALAA
Sbjct: 121 EIAQQLRDKLTEVEAEVVKQREAKRGSTSKSEAQDKALSMIRLRADLQKAIEAENYALAA 180

Query: 179 DLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSW 238
           +LRD+I KLEAESLAASA AL +EN  +AFRLGQKV HK+FGY AVICGMDPVCCESSSW
Sbjct: 181 ELRDEINKLEAESLAASANALVYENTPYAFRLGQKVRHKVFGYSAVICGMDPVCCESSSW 240

Query: 239 MEIAQVEKLQQGPSQPFYQV 258
            E A V+KL +G +QPFYQV
Sbjct: 241 RESAHVDKLTRGSNQPFYQV 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423547|ref|XP_002274826.1| PREDICTED: uncharacterized protein LOC100266199 [Vitis vinifera] gi|297738051|emb|CBI27252.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/260 (71%), Positives = 213/260 (81%), Gaps = 2/260 (0%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRI--GIDRPCFCHQFVQGLHLRVTF 58
           MVQ +S+STLTTSGNGG YGS ALW RHF+L+ K++I  G +R    H   Q L      
Sbjct: 1   MVQCVSVSTLTTSGNGGVYGSTALWGRHFQLMRKTQIRTGSERNFLWHHCAQRLFFAGQL 60

Query: 59  NLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEY 118
            + RQRNLR  AGWLFKGG D+GLDASSE SESANEDIL FFFQLDLATRVQ ALN E+Y
Sbjct: 61  VMQRQRNLRVEAGWLFKGGGDQGLDASSECSESANEDILIFFFQLDLATRVQYALNTEQY 120

Query: 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
           +IAQQLR+KLTEVE E+ +Q EAKRG +SKSEAQDKALS+IRLRADLQKAI++ENYALAA
Sbjct: 121 EIAQQLRDKLTEVEAEVVKQREAKRGSTSKSEAQDKALSMIRLRADLQKAIEAENYALAA 180

Query: 179 DLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSW 238
           +LRD+I KLEAESLAASA AL +EN  +AFRLGQKV HK+FGY AVICGMDPVCCESSSW
Sbjct: 181 ELRDEINKLEAESLAASANALVYENTPYAFRLGQKVRHKVFGYSAVICGMDPVCCESSSW 240

Query: 239 MEIAQVEKLQQGPSQPFYQV 258
            E A V+KL +G +QPFYQV
Sbjct: 241 RESAHVDKLTRGSNQPFYQV 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542114|ref|XP_002512121.1| DNA binding protein, putative [Ricinus communis] gi|223549301|gb|EEF50790.1| DNA binding protein, putative [Ricinus communis]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 186/261 (71%), Positives = 206/261 (78%), Gaps = 7/261 (2%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWR-RHFKLLEKSR--IGIDRPCFCHQFVQGLHLRVT 57
           MVQ LSL+ LT S N G   S   WR RHFKL+ ++    GIDR    HQ VQ L+    
Sbjct: 1   MVQNLSLNALTVSRNCGICVSLPSWRGRHFKLVRRTHNAFGIDR----HQLVQSLYFMGN 56

Query: 58  FNLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEE 117
            NL R RNLR  AGWLF  G ++  +AS ERSESANEDIL FFFQLDLATRVQ ALN E+
Sbjct: 57  PNLSRHRNLRVEAGWLFNRGGNQESEASCERSESANEDILIFFFQLDLATRVQYALNTEQ 116

Query: 118 YDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALA 177
           YDIAQQLRNKLTEVE E+ RQ EAKRG SSKSEAQDKALSIIRLRADLQ AI++ENYA+A
Sbjct: 117 YDIAQQLRNKLTEVEAEVIRQQEAKRGSSSKSEAQDKALSIIRLRADLQNAIENENYAMA 176

Query: 178 ADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSS 237
           A LRDQI KLEAESLAAS  ALA+ENA++AFRLGQKV HK FGY+AV+CGMDPVCCESSS
Sbjct: 177 AQLRDQISKLEAESLAASVNALAYENAQYAFRLGQKVTHKTFGYQAVVCGMDPVCCESSS 236

Query: 238 WMEIAQVEKLQQGPSQPFYQV 258
           WME AQVEKL +G +QPFYQV
Sbjct: 237 WMETAQVEKLSRGSNQPFYQV 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452875|ref|XP_004144184.1| PREDICTED: uncharacterized protein LOC101203572 [Cucumis sativus]

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 161/260 (61%), Positives = 196/260 (75%), Gaps = 3/260 (1%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIG--IDRPCFCHQFVQGLHLRVTF 58
           MVQ LS+  +T  G+   YGS   WRR+FK  +++ +     R CF HQ ++   L    
Sbjct: 1   MVQDLSIHAMTALGDPNVYGSALSWRRNFKYFKQTSLTQLTSRQCFWHQCMRSFSLTSQP 60

Query: 59  NLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEY 118
              ++ + +  AGWLFKGG         ERSE+AN DIL FFFQLDLATRVQ ALN+E+Y
Sbjct: 61  RRSKRGSFKIRAGWLFKGGGQES-GGRIERSENANNDILIFFFQLDLATRVQYALNIEQY 119

Query: 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
           +IAQ+LR KLTEVE E+ +Q E+K+GL+SKSE QDK L+IIRLRADLQKA++SENYALAA
Sbjct: 120 EIAQELRMKLTEVEAEVIKQQESKKGLTSKSEVQDKGLNIIRLRADLQKAVESENYALAA 179

Query: 179 DLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSW 238
            LRD+I KLE +SLAASA  LA+E+A ++FRLGQKV HKIFGYR VICGMDPVCCESSSW
Sbjct: 180 QLRDEISKLETDSLAASAKVLAYESAEYSFRLGQKVRHKIFGYRGVICGMDPVCCESSSW 239

Query: 239 MEIAQVEKLQQGPSQPFYQV 258
           MEIAQVEKL +G +QPFYQV
Sbjct: 240 MEIAQVEKLSRGSNQPFYQV 259

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499859|ref|XP_003518753.1| PREDICTED: uncharacterized protein LOC100794023 [Glycine max]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 176/260 (67%), Positives = 205/260 (78%), Gaps = 9/260 (3%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGID--RPCFCHQFVQGLHLRVTF 58
           MVQV+SLSTL T GN    GS   W   F+  ++S+I     R    +  VQ L L    
Sbjct: 1   MVQVVSLSTLATCGNSRLCGSSPSWMAPFEPYKRSQITSSNGRHLVWNNSVQSLFL---- 56

Query: 59  NLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEY 118
              R  + RA A W+F+GG ++GLDASSE SESANEDIL FFFQLDLATRVQ ALNME+Y
Sbjct: 57  --TRHSDFRAEAAWMFRGG-EQGLDASSEHSESANEDILMFFFQLDLATRVQYALNMEQY 113

Query: 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
           DIA+QLRNKL EVEEE+ +Q ++KRGLSSK EAQDKA+SIIRLR+DLQKAI++E+YALAA
Sbjct: 114 DIAKQLRNKLAEVEEEVIKQQQSKRGLSSKGEAQDKAISIIRLRSDLQKAIENEDYALAA 173

Query: 179 DLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSW 238
           +LRD+I KLEAESLAASATALA ENA++AFRLGQKV HK FGYRAVICGMDPVC ESSSW
Sbjct: 174 ELRDEISKLEAESLAASATALAHENAQYAFRLGQKVRHKKFGYRAVICGMDPVCSESSSW 233

Query: 239 MEIAQVEKLQQGPSQPFYQV 258
           ME AQV+KL +G +QPFYQV
Sbjct: 234 MENAQVKKLSRGSAQPFYQV 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42568906|ref|NP_178438.2| uvrB/uvrC motif-containing protein [Arabidopsis thaliana] gi|51971212|dbj|BAD44298.1| unknown protein [Arabidopsis thaliana] gi|51971335|dbj|BAD44332.1| unknown protein [Arabidopsis thaliana] gi|330250601|gb|AEC05695.1| uvrB/uvrC motif-containing protein [Arabidopsis thaliana]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/259 (64%), Positives = 192/259 (74%), Gaps = 4/259 (1%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNL 60
           MVQ  SLSTLT  G+       +L R     ++ S +  DR   C    +    R  +  
Sbjct: 1   MVQSQSLSTLTICGS---VKVSSLLRNRLNSVKASSLIGDRCVSCQFLRKSPSFRSHWKS 57

Query: 61  LRQRNL-RANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEYD 119
           L+QRNL R  A W F+GG ++GLD SSERSESANEDIL FFFQLDLATRVQ A+N+E+YD
Sbjct: 58  LKQRNLLRVEARWPFQGGGEQGLDPSSERSESANEDILIFFFQLDLATRVQYAMNLEQYD 117

Query: 120 IAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAAD 179
           IAQQLR KLTEVEEE  R  E KRG S+KSEAQDK +SIIRLRADLQ AIDSE+Y LAA 
Sbjct: 118 IAQQLREKLTEVEEESIRLQEGKRGSSAKSEAQDKGISIIRLRADLQNAIDSEDYGLAAK 177

Query: 180 LRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWM 239
           LRD+I KLEAESLA SA ALAFE A +AFRLGQK+ HK FGYRAV+CGMDP+C ESSSWM
Sbjct: 178 LRDEISKLEAESLAVSAKALAFEKAEYAFRLGQKLRHKTFGYRAVVCGMDPICSESSSWM 237

Query: 240 EIAQVEKLQQGPSQPFYQV 258
           E A+VEKL +G +QPFYQV
Sbjct: 238 EAAEVEKLPRGSNQPFYQV 256

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817996|ref|XP_002876881.1| hypothetical protein ARALYDRAFT_904615 [Arabidopsis lyrata subsp. lyrata] gi|297322719|gb|EFH53140.1| hypothetical protein ARALYDRAFT_904615 [Arabidopsis lyrata subsp. lyrata]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 168/260 (64%), Positives = 193/260 (74%), Gaps = 5/260 (1%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNL 60
           MVQ  SLSTLT  G+       +L R      + S +  DR   C    +    R  +  
Sbjct: 1   MVQSQSLSTLTICGS---VKVSSLLRNRLNSSKASSLIGDRCVSCQFLRKSPSFRSHWKS 57

Query: 61  LRQRNL-RANAGWLFKGGS-DRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEY 118
           ++QRNL R  A W F+GG  ++GLD SSERSESANEDIL FFFQLDLATRVQ A+N+E+Y
Sbjct: 58  IKQRNLLRVEARWPFQGGGGEQGLDPSSERSESANEDILIFFFQLDLATRVQYAMNLEQY 117

Query: 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
           DIAQQLR KLTEVEEE  R  E KRG S+KSEAQDK +SIIRLRADLQ AIDSE+Y LAA
Sbjct: 118 DIAQQLREKLTEVEEESIRLQEGKRGSSAKSEAQDKGISIIRLRADLQNAIDSEDYGLAA 177

Query: 179 DLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSW 238
            LRD+I KLEAESLA SA ALAFENA +AFRLGQK+ HK FGYRAV+CGMDP+CCESSSW
Sbjct: 178 KLRDEISKLEAESLAVSAKALAFENAEYAFRLGQKLRHKTFGYRAVVCGMDPICCESSSW 237

Query: 239 MEIAQVEKLQQGPSQPFYQV 258
           ME A+VEKL +G +QPFYQV
Sbjct: 238 MEAAEVEKLPRGSNQPFYQV 257

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487407|ref|XP_003613991.1| F-box only protein [Medicago truncatula] gi|355515326|gb|AES96949.1| F-box only protein [Medicago truncatula]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/261 (63%), Positives = 203/261 (77%), Gaps = 10/261 (3%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRI--GIDRPCFCHQFVQGL-HLRVT 57
           MVQ +SLSTL T G    YGSP      F+  ++S I     +    ++ V+ L  +   
Sbjct: 1   MVQGVSLSTLATCGKSRIYGSP------FEPFKQSHITSSTGKHLVWNKCVKSLVFIGYP 54

Query: 58  FNLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEE 117
           F   ++   +  AGW+F+GG ++ LDAS E+SESANEDIL FFFQLDLATRVQCALNMEE
Sbjct: 55  FASRQRSGFKVEAGWMFRGG-EQELDASVEQSESANEDILMFFFQLDLATRVQCALNMEE 113

Query: 118 YDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALA 177
           YDIA+QLRNKLTEVEEE+ +Q ++KRG+SSKSEAQDKALS+IRLR+DLQ AI++E+YALA
Sbjct: 114 YDIAKQLRNKLTEVEEEVIKQKQSKRGMSSKSEAQDKALSVIRLRSDLQSAIENEDYALA 173

Query: 178 ADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSS 237
           A LRD+I KLEAESLAASA ALA ENA++ FRLGQKV HK+FGYRA+I GMDPVC ESSS
Sbjct: 174 AKLRDEISKLEAESLAASAKALAHENAQYVFRLGQKVKHKMFGYRAIIVGMDPVCSESSS 233

Query: 238 WMEIAQVEKLQQGPSQPFYQV 258
           WME AQV+KL +G +QPFYQV
Sbjct: 234 WMENAQVKKLSRGTAQPFYQV 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356494893|ref|XP_003516316.1| PREDICTED: uncharacterized protein LOC100783767 [Glycine max]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/200 (75%), Positives = 174/200 (87%), Gaps = 2/200 (1%)

Query: 60  LLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDIL-FFFFQLDLATRVQCALNMEEY 118
           L R    RA A W+F+GG ++GLD SSE SESANEDIL FFFFQLDLATRVQ ALNME+Y
Sbjct: 31  LTRHSGFRAEAAWMFRGG-EQGLDVSSEHSESANEDILMFFFFQLDLATRVQYALNMEQY 89

Query: 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
           DIA+QLRNKL EVEEE+ +Q ++KRGLSSKSEAQDKA+SIIRL +DLQ AI++E+YALAA
Sbjct: 90  DIAKQLRNKLAEVEEEVIKQQQSKRGLSSKSEAQDKAISIIRLHSDLQNAIENEHYALAA 149

Query: 179 DLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSW 238
           +LRD+I KLEAESLAASA ALA ENA++AFRLGQKV HK FGY+AVICGMDPVC ESSSW
Sbjct: 150 ELRDEISKLEAESLAASAKALAHENAQYAFRLGQKVRHKKFGYKAVICGMDPVCSESSSW 209

Query: 239 MEIAQVEKLQQGPSQPFYQV 258
           ME AQV+KL +G +QPFYQV
Sbjct: 210 MENAQVKKLSRGSAQPFYQV 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125527819|gb|EAY75933.1| hypothetical protein OsI_03852 [Oryza sativa Indica Group] gi|125572130|gb|EAZ13645.1| hypothetical protein OsJ_03562 [Oryza sativa Japonica Group]

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 139/195 (71%), Positives = 163/195 (83%), Gaps = 3/195 (1%)

Query: 65  NLRANAGWLFKGGSDRGL-DASSERSESANEDILFFFFQLDLATRVQCALNMEEYDIAQQ 123
            +R NA WLF GG DR   +A  ERSESANEDIL F+FQLDL TR+Q ALN+E++D+A+Q
Sbjct: 4   TVRTNAKWLF-GGDDRSSSNARLERSESANEDILIFYFQLDLQTRIQYALNIEQFDVAKQ 62

Query: 124 LRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQ 183
           LR KLTE+E EI RQ EAKRG SSK+EAQDKA++++R+RADLQKA+DSENYALAA LRD+
Sbjct: 63  LREKLTEIETEIIRQREAKRG-SSKTEAQDKAINLLRVRADLQKAVDSENYALAAALRDE 121

Query: 184 ICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQ 243
           I KLE ESLA SA ALA++N  +AFRLGQKV HK+ GYRAVICGMDPVCCES SWME A 
Sbjct: 122 IAKLETESLAVSAKALAYQNVEYAFRLGQKVRHKVHGYRAVICGMDPVCCESKSWMETAN 181

Query: 244 VEKLQQGPSQPFYQV 258
           VE L +GP+QPFYQV
Sbjct: 182 VENLSKGPNQPFYQV 196

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2063761	330	AT2G03390 [Arabidopsis thalian	0.980	0.769	0.603	5.5e-70
UNIPROTKB|F1NDZ7	612	FBXO21 "Uncharacterized protei	0.196	0.083	0.431	1.8e-05
UNIPROTKB|H0YIE9	505	FBXO21 "F-box only protein 21"	0.196	0.100	0.392	0.00056
UNIPROTKB|H0YHF6	225	FBXO21 "F-box only protein 21"	0.196	0.226	0.392	0.00058
RGD|1307346	572	Fbxo21 "F-box protein 21" [Rat	0.196	0.089	0.392	0.0006
ZFIN|ZDB-GENE-100922-229	611	fbxo21 "F-box protein 21" [Dan	0.196	0.083	0.431	0.00072
MGI|MGI:1924223	627	Fbxo21 "F-box protein 21" [Mus	0.196	0.081	0.392	0.00075
UNIPROTKB|E9PTD1	627	Fbxo21 "Protein Fbxo21" [Rattu	0.196	0.081	0.392	0.00075
UNIPROTKB|E2RKH1	620	FBXO21 "Uncharacterized protei	0.196	0.082	0.392	0.00095
UNIPROTKB|F1RKE9	627	FBXO21 "Uncharacterized protei	0.196	0.081	0.392	0.00098

TAIR|locus:2063761 AT2G03390 [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 157/260 (60%), Positives = 180/260 (69%)

Query:     1 MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQ-GLHLRVTFN 59
             MVQ  SLSTLT  G+     S  L  R   +   S IG DR C   QF++     R  + 
Sbjct:     1 MVQSQSLSTLTICGSVKV--SSLLRNRLNSVKASSLIG-DR-CVSCQFLRKSPSFRSHWK 56

Query:    60 LLRQRNL-RANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEY 118
              L+QRNL R  A W F+GG ++GLD SSERSESANEDIL FFFQLDLATRVQ A+N+E+Y
Sbjct:    57 SLKQRNLLRVEARWPFQGGGEQGLDPSSERSESANEDILIFFFQLDLATRVQYAMNLEQY 116

Query:   119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
             DIAQQLR KLTEVEEE  R  E KRG S+KSEAQDK +SIIRLRADLQ AIDSE+Y LAA
Sbjct:   117 DIAQQLREKLTEVEEESIRLQEGKRGSSAKSEAQDKGISIIRLRADLQNAIDSEDYGLAA 176

Query:   179 DLRDQICKXXXXXXXXXXXXXXXXXXRFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSW 238
              LRD+I K                   +AFRLGQK+ HK FGYRAV+CGMDP+C ESSSW
Sbjct:   177 KLRDEISKLEAESLAVSAKALAFEKAEYAFRLGQKLRHKTFGYRAVVCGMDPICSESSSW 236

Query:   239 MEIAQVEKLQQGPSQPFYQV 258
             ME A+VEKL +G +QPFYQV
Sbjct:   237 MEAAEVEKLPRGSNQPFYQV 256

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0004518 "nuclease activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006289 "nucleotide-excision repair" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

UNIPROTKB|F1NDZ7 FBXO21 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 120 (47.3 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
 Identities = 22/51 (43%), Positives = 26/51 (50%)

Query:   208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
             F +G  + HK +GY  VI G DP C     W+    V  L  GP QPFY V
Sbjct:   477 FSIGLIMKHKRYGYNCVIYGWDPACMMGHEWIRNMNVHSLPHGPHQPFYNV 527

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|H0YIE9 FBXO21 "F-box only protein 21" [Homo sapiens (taxid:9606)]

 Score = 108 (43.1 bits), Expect = 0.00056, Sum P(2) = 0.00056
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query:   208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
             + +G  + HK +GY  VI G DP C     W+    V  L  G  QPFY V
Sbjct:   380 YSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNV 430

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|H0YHF6 FBXO21 "F-box only protein 21" [Homo sapiens (taxid:9606)]

 Score = 108 (43.1 bits), Expect = 0.00058, P = 0.00058
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query:   208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
             + +G  + HK +GY  VI G DP C     W+    V  L  G  QPFY V
Sbjct:   155 YSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNV 205

GO:0003677 "DNA binding" evidence=IEA

RGD|1307346 Fbxo21 "F-box protein 21" [Rattus norvegicus (taxid:10116)]

 Score = 109 (43.4 bits), Expect = 0.00060, Sum P(2) = 0.00060
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query:   208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
             + +G  + HK +GY  VI G DP C     W+    V  L  G  QPFY V
Sbjct:   448 YSIGLVMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNV 498

GO:0003677 "DNA binding" evidence=IEA

ZFIN|ZDB-GENE-100922-229 fbxo21 "F-box protein 21" [Danio rerio (taxid:7955)]

 Score = 114 (45.2 bits), Expect = 0.00072, P = 0.00072
 Identities = 22/51 (43%), Positives = 27/51 (52%)

Query:   208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
             F  G  + HK  GY  VI G DP C  S  W+   +V +L +G  QPFY V
Sbjct:   496 FSTGLIMKHKRSGYNCVIYGWDPKCTMSQEWINTMRVHQLSKGADQPFYNV 546

GO:0003677 "DNA binding" evidence=IEA

MGI|MGI:1924223 Fbxo21 "F-box protein 21" [Mus musculus (taxid:10090)]

 Score = 109 (43.4 bits), Expect = 0.00075, Sum P(2) = 0.00075
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query:   208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
             + +G  + HK +GY  VI G DP C     W+    V  L  G  QPFY V
Sbjct:   503 YSIGLVMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNV 553

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E9PTD1 Fbxo21 "Protein Fbxo21" [Rattus norvegicus (taxid:10116)]

 Score = 109 (43.4 bits), Expect = 0.00075, Sum P(2) = 0.00075
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query:   208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
             + +G  + HK +GY  VI G DP C     W+    V  L  G  QPFY V
Sbjct:   503 YSIGLVMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNV 553

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2RKH1 FBXO21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 108 (43.1 bits), Expect = 0.00095, Sum P(2) = 0.00095
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query:   208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
             + +G  + HK +GY  VI G DP C     W+    V  L  G  QPFY V
Sbjct:   496 YSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNV 546

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1RKE9 FBXO21 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 108 (43.1 bits), Expect = 0.00098, Sum P(2) = 0.00098
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query:   208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
             + +G  + HK +GY  VI G DP C     W+    V  L  G  QPFY V
Sbjct:   503 YSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNV 553

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
pfam08755	100	pfam08755, YccV-like, Hemimethylated DNA-binding p	1e-17
TIGR02097	101	TIGR02097, yccV, hemimethylated DNA binding domain	4e-17
smart00992	98	smart00992, YccV-like, Hemimethylated DNA-binding	5e-09
COG3785	116	COG3785, COG3785, Uncharacterized conserved protei	3e-05
COG0556	663	COG0556, UvrB, Helicase subunit of the DNA excisio	6e-05
pfam02151	36	pfam02151, UVR, UvrB/uvrC motif	1e-04
PRK14129	105	PRK14129, PRK14129, heat shock protein HspQ; Provi	4e-04
PRK05298	652	PRK05298, PRK05298, excinuclease ABC subunit B; Pr	0.002

>gnl|CDD|220004 pfam08755, YccV-like, Hemimethylated DNA-binding protein YccV like

 Score = 75.7 bits (187), Expect = 1e-17
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
           FR+GQ V H++FGYR VI  +DP    S  W E    ++      QPFY V
Sbjct: 4   FRIGQVVRHRLFGYRGVIFDVDPEFAASEEWYEAIPEDRR-PARDQPFYHV 53

YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix. Length = 100

>gnl|CDD|131152 TIGR02097, yccV, hemimethylated DNA binding domain

 Score = 74.3 bits (183), Expect = 4e-17
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 207 AFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
            FR+GQ V HK+FGYR V+  +DP    +  W++   VE       QPFY V
Sbjct: 3   KFRIGQVVRHKLFGYRGVVIDVDPEYSNTEEWLDAIPVEIRPLR-DQPFYHV 53

This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins. Length = 101

>gnl|CDD|214961 smart00992, YccV-like, Hemimethylated DNA-binding protein YccV like

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGP--SQPFYQV 258
           FR+GQ V HK+FGYR V+   DP    +  W +    +     P   QPFY V
Sbjct: 4   FRIGQVVRHKLFGYRGVVFDWDPEFANTEEWYDEIPED---SRPPRDQPFYHV 53

YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix. Length = 98

>gnl|CDD|226308 COG3785, COG3785, Uncharacterized conserved protein [Function unknown]

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
           F +GQ V H++F +R V+  +DP    +  W +   V        QPFY +
Sbjct: 15  FGIGQVVRHRLFPFRGVVFDVDPEYANTEEWPDEIPVNIRPL-RDQPFYHL 64

Length = 116

>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 108 RVQCALNMEEYDIAQQLRNK----LTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRA 163
            +Q A N EE+ I  Q   K    + + E E           +SK   ++    I +L  
Sbjct: 573 EIQMAYN-EEHGITPQTIKKKIRDILDGEYEEDEYKAKIEKKASKMSKKELEKLIKKLEK 631

Query: 164 DLQKAIDSENYALAADLRDQICKLEAESLAAS 195
           ++++A  +  +  AA LRD+I +L+ E L  S
Sbjct: 632 EMKEAAKNLEFEEAARLRDEIKELKEELLGKS 663

Length = 663

>gnl|CDD|145355 pfam02151, UVR, UvrB/uvrC motif

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAE 190
           I  L  ++++A + E++  AA LRDQI  LE +
Sbjct: 4   IKELEEEMEEAAEEEDFEKAAKLRDQIKALEKQ 36

Length = 36

>gnl|CDD|184526 PRK14129, PRK14129, heat shock protein HspQ; Provisional

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 208 FRLGQKVNHKIFGYRAVICGMDPV-CCESSSWMEIAQVEKLQQGPSQPFYQV 258
           F +GQ+V H + GY  V+  +DP    E  S  E+A  ++L+   + P+Y V
Sbjct: 6   FGIGQQVRHSLLGYLGVVVDIDPEYSLEEPSPDELAVNDELR---AAPWYHV 54

Length = 105

>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional

 Score = 38.5 bits (91), Expect = 0.002
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 134 EISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193
           +I   L++       S+ + + L I  L   +++A  +  +  AA LRD+I +L+ E L 
Sbjct: 592 KIRDILDSVYKKDKLSKKELEKL-IKELEKQMKEAAKNLEFEEAARLRDEIKELKEELLG 650

Query: 194 AS 195
            S
Sbjct: 651 LS 652

Length = 652

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
TIGR02097	101	yccV hemimethylated DNA binding domain. This model	99.84
COG3880	176	Modulator of heat shock repressor CtsR, McsA [Sign	99.81
PF08755	100	YccV-like: Hemimethylated DNA-binding protein YccV	99.81
PRK14129	105	heat shock protein HspQ; Provisional	99.67
COG3785	116	Uncharacterized conserved protein [Function unknow	99.5
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	98.4
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	96.65
PRK00558	598	uvrC excinuclease ABC subunit C; Validated	96.0
PRK05298	652	excinuclease ABC subunit B; Provisional	95.77
TIGR00631	655	uvrb excinuclease ABC, B subunit. This family is b	95.68
PRK12306	519	uvrC excinuclease ABC subunit C; Reviewed	95.42
TIGR00194	574	uvrC excinuclease ABC, C subunit. This family cons	95.27
PRK14671	621	uvrC excinuclease ABC subunit C; Provisional	95.19
PRK14666	694	uvrC excinuclease ABC subunit C; Provisional	95.12
PRK07883	557	hypothetical protein; Validated	95.07
PRK14669	624	uvrC excinuclease ABC subunit C; Provisional	94.97
PRK14672	691	uvrC excinuclease ABC subunit C; Provisional	94.66
PRK14668	577	uvrC excinuclease ABC subunit C; Provisional	94.18
PRK14667	567	uvrC excinuclease ABC subunit C; Provisional	94.02
PRK14670	574	uvrC excinuclease ABC subunit C; Provisional	93.89
COG0322	581	UvrC Nuclease subunit of the excinuclease complex	93.36
PF04420	161	CHD5: CHD5-like protein; InterPro: IPR007514 Membe	89.38

>TIGR02097 yccV hemimethylated DNA binding domain

Probab=99.84  E-value=1.2e-21  Score=157.27  Aligned_cols=52  Identities=42%  Similarity=0.831  Sum_probs=49.5

Q ss_pred             cccccCcEEEeeccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979          206 FAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV  258 (259)
Q Consensus       206 v~FrVGqVvrHr~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV  258 (259)
                      ++|+|||||+||+|||+|||+||||+|.++++|+++|+++.++. ++||||||
T Consensus         2 ~kf~IGqvvrHr~~~yrGVI~gwDp~~~~~eeW~~~~~~~~~p~-~~qPfYhv   53 (101)
T TIGR02097         2 AKFRIGQVVRHKLFGYRGVVIDVDPEYSNTEEWLDAIPVEIRPL-RDQPFYHV   53 (101)
T ss_pred             ceecCCCEEEecccCCCEEEEeEChhccCChHHHHhhhcccCcc-cCCCceEE
Confidence            68999999999999999999999999999999999999987655 99999997

This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins.

>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]

Probab=99.81  E-value=1.3e-20  Score=163.26  Aligned_cols=94  Identities=23%  Similarity=0.252  Sum_probs=84.2

Q ss_pred             Cceeeccccccccc-----cccccccHHhhHhHHHHHHHHHHHHHhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHh
Q 024979           94 EDILFFFFQLDLAT-----RVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKA  168 (259)
Q Consensus        94 ~~i~c~~cq~dl~~-----RlgCp~cYe~F~~a~~Lr~~L~~ih~~~~~~h~GK~p~~~~~ea~d~~~~L~~Lk~~Lq~A  168 (259)
                      +.+.|+.|++++..     |+||+.||.+|.+  .|.|.++++|++- ..|+||+|. +....+..+.+|..|++.|+++
T Consensus        73 e~l~C~~C~~Tfk~f~~~g~fGCaeCY~tf~~--~i~pi~~rvq~g~-~~H~GK~P~-~~~~~i~~~~~I~~L~e~Lq~~  148 (176)
T COG3880          73 ELLGCHNCGMTFKEFIQSGLFGCAECYKTFES--QISPIITRVQGGY-VEHVGKVPK-RIGRKINPKRKIIALKEALQDL  148 (176)
T ss_pred             HHhcCccccccHHHHHHhcccchHHHHHHHHH--HhhHHHHHhhCCc-eeecCcCcc-cccccccHHHHHHHHHHHHHHH
Confidence            36899999999865     9999999999997  9999999999993 278999994 3555567889999999999999


Q ss_pred             hchhhHHHHHHhhhHHHHHHHhh
Q 024979          169 IDSENYALAADLRDQICKLEAES  191 (259)
Q Consensus       169 Ie~E~YE~AA~lRDeIr~Le~~~  191 (259)
                      |+.||||+||.|||+|+.|+++.
T Consensus       149 i~~EefEeAA~iRDqIr~Lk~k~  171 (176)
T COG3880         149 IEREEFEEAAVIRDQIRALKAKN  171 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999763

>PF08755 YccV-like: Hemimethylated DNA-binding protein YccV like; InterPro: IPR011722 This entry describes the small protein from Escherichia coli YccV and its homologs in other Proteobacteria

Probab=99.81  E-value=4.1e-21  Score=152.33  Aligned_cols=52  Identities=46%  Similarity=0.944  Sum_probs=22.6

Q ss_pred             cccccCcEEEeeccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979          206 FAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV  258 (259)
Q Consensus       206 v~FrVGqVvrHr~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV  258 (259)
                      ++|+|||||+||+|||+|||+|||+.|.++++|+.+|+++.++. ++||||+|
T Consensus         2 ~~f~vGqvv~Hr~~~y~GVIvgwD~~~~~~~~W~~~~~~~~~~~-~~qPfY~v   53 (100)
T PF08755_consen    2 VKFRVGQVVRHRRYGYRGVIVGWDPECQAPEEWIEQMGVDNLPR-RNQPFYHV   53 (100)
T ss_dssp             -SS-TT-EEEETTT--EEEEEEEE-------------------------EEEE
T ss_pred             cccccCCEEEEeeeCccEEEECcccccCCCchHHHhcccccccc-CCCCcEEE
Confidence            68999999999999999999999999999999999999988766 99999997

YccV is now described as a hemimethylated DNA binding protein []. The model entry describes a domain in longer eukaryotic proteins.; PDB: 1VBV_A.

>PRK14129 heat shock protein HspQ; Provisional

Probab=99.67  E-value=3.2e-17  Score=132.51  Aligned_cols=51  Identities=27%  Similarity=0.522  Sum_probs=47.7

Q ss_pred             cccccCcEEEeeccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979          206 FAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV  258 (259)
Q Consensus       206 v~FrVGqVvrHr~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV  258 (259)
                      .+|.|||+|+||+|||||||++.||+|+.+++|++.+..+  .+.++||||||
T Consensus         4 akF~IGQ~VrHrl~~yrGVV~DVDP~fs~~e~w~~~ia~~--~p~kdqPwYHv   54 (105)
T PRK14129          4 SKFGIGQQVRHSLLGYLGVVVDIDPEYSLEEPSPDELAVN--DELRAAPWYHV   54 (105)
T ss_pred             ccccCCcEEEEeecCCCeEEEeeCCCcCCCchhHHhhccC--CCccCCCceEE
Confidence            4899999999999999999999999999999999999655  58899999997

>COG3785 Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=5e-15  Score=120.50  Aligned_cols=52  Identities=31%  Similarity=0.691  Sum_probs=48.7

Q ss_pred             cccccCcEEEeeccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979          206 FAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV  258 (259)
Q Consensus       206 v~FrVGqVvrHr~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV  258 (259)
                      .+|.|||+|||++|+|+|||++.||++..+++|...+.++ .++.++||||||
T Consensus        13 aKF~IGQvVRHrlfpfrGVV~DvDPeyanteew~~~ip~~-~rp~rdqPfYHl   64 (116)
T COG3785          13 AKFGIGQVVRHRLFPFRGVVFDVDPEYANTEEWPDEIPVN-IRPLRDQPFYHL   64 (116)
T ss_pred             hhcchhhhhhhhhcccceEEEecCcccccCccChhhcccc-ccccccCCceee
Confidence            5899999999999999999999999999999999999554 589999999997

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=98.40  E-value=4.4e-07  Score=60.33  Aligned_cols=35  Identities=34%  Similarity=0.520  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHh
Q 024979          156 LSIIRLRADLQKAIDSENYALAADLRDQICKLEAE  190 (259)
Q Consensus       156 ~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~  190 (259)
                      ..|..|+.+|..|+++++||+||.|||+|..|+.+
T Consensus         2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q   36 (36)
T PF02151_consen    2 KLIKELEEKMEEAVENEDFEKAARLRDQIKALKKQ   36 (36)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence            35788999999999999999999999999999864

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=96.65  E-value=0.0037  Score=63.81  Aligned_cols=44  Identities=27%  Similarity=0.388  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhh
Q 024979          150 EAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA  193 (259)
Q Consensus       150 ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~A  193 (259)
                      ...+.+..|..|+++|++|-++-+||+||+|||+|.+|+++..+
T Consensus       618 ~~~e~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~~~~  661 (663)
T COG0556         618 SKKELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEELLG  661 (663)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Confidence            45567888999999999999999999999999999999987653

>PRK00558 uvrC excinuclease ABC subunit C; Validated

Probab=96.00  E-value=0.021  Score=58.27  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL  192 (259)
Q Consensus       157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~  192 (259)
                      -+..|+.+|++|.++.+||+||++||+|..|+.-.+
T Consensus       203 ~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~~  238 (598)
T PRK00558        203 VLKELEEKMEEASENLEFERAARYRDQIQALRRVQE  238 (598)
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHh
Confidence            567899999999999999999999999999997665

>PRK05298 excinuclease ABC subunit B; Provisional

Probab=95.77  E-value=0.014  Score=59.65  Aligned_cols=40  Identities=30%  Similarity=0.378  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979          153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL  192 (259)
Q Consensus       153 d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~  192 (259)
                      ..+..+..|+.+|++|.++.+||+||++||+|+.|+..+.
T Consensus       610 ~~~~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~~  649 (652)
T PRK05298        610 ELEKLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEELL  649 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            3445677899999999999999999999999999997654

>TIGR00631 uvrb excinuclease ABC, B subunit

Probab=95.68  E-value=0.011  Score=60.87  Aligned_cols=37  Identities=27%  Similarity=0.402  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHH
Q 024979          152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLE  188 (259)
Q Consensus       152 ~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le  188 (259)
                      .++...|..|+++|++|.++.+||+||++||+|+.|+
T Consensus       619 ~~~~~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~  655 (655)
T TIGR00631       619 KELKKLIKQLEKEMKQAARNLEFEEAARLRDEILELK  655 (655)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            3456678889999999999999999999999999874

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

>PRK12306 uvrC excinuclease ABC subunit C; Reviewed

Probab=95.42  E-value=0.024  Score=57.17  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhh
Q 024979          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAES  191 (259)
Q Consensus       157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~  191 (259)
                      -+..|+++|+.|-++.+||+||++||+|+.|+.=.
T Consensus       193 ~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~~~  227 (519)
T PRK12306        193 LIEKLEEEMAEKAKNQQFERALVIRDEINAIENLQ  227 (519)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            35679999999999999999999999999998644

>TIGR00194 uvrC excinuclease ABC, C subunit

Probab=95.27  E-value=0.03  Score=57.05  Aligned_cols=74  Identities=20%  Similarity=0.233  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhhhHhhhhhccccc---ccccCcEEEeeccCccEEEEcccc
Q 024979          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARF---AFRLGQKVNHKIFGYRAVICGMDP  230 (259)
Q Consensus       157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~AaSa~al~~~n~~v---~FrVGqVvrHr~ygYrGVIvgWDp  230 (259)
                      -+.+|+.+|++|-++.+||+||++||+|+.|+.-.+.-........+..+   ....|..+.+-.+=-.|.|+|.+.
T Consensus       195 ~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~~~~~Q~v~~~~~~d~Dvi~~~~~~~~~~v~v~~vR~G~l~~~~~  271 (574)
T TIGR00194       195 VIKELEQKMEKASENLEFEEAARIRDQIAAVRELNEKQHVSLTDLIDLDIIAVAFDGNVAAIQVFFIRQGKLIGRDQ  271 (574)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCeeecCCCCCceEEEEEEcCCcEEEEEEEEECCEEeccee
Confidence            35679999999999999999999999999998655421111111112222   333344433333323377777763

This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.

>PRK14671 uvrC excinuclease ABC subunit C; Provisional

Probab=95.19  E-value=0.027  Score=57.81  Aligned_cols=36  Identities=31%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL  192 (259)
Q Consensus       157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~  192 (259)
                      -+..|+.+|+.|-++.+||+||++||+|+.|+.-.+
T Consensus       216 l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~~~~~  251 (621)
T PRK14671        216 LIRSLTEEMQRAAAELKFEEAAELKDQIESLKRYAE  251 (621)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence            356799999999999999999999999999986443

>PRK14666 uvrC excinuclease ABC subunit C; Provisional

Probab=95.12  E-value=0.031  Score=58.32  Aligned_cols=36  Identities=31%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL  192 (259)
Q Consensus       157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~  192 (259)
                      -+..|+.+|++|.++.+||+||++||+|+.|+.-.+
T Consensus       202 l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~~~~  237 (694)
T PRK14666        202 LVDALRTEMEAASEALEFERAAVLRDQIRAVERTVE  237 (694)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence            356799999999999999999999999999987554

>PRK07883 hypothetical protein; Validated

Probab=95.07  E-value=0.023  Score=57.40  Aligned_cols=36  Identities=28%  Similarity=0.392  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL  192 (259)
Q Consensus       157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~  192 (259)
                      -+..|+++|+.|.++.+||+||++||+|+.|+.-.+
T Consensus       407 ~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~~~~  442 (557)
T PRK07883        407 VLAALRARIDRLAAAERFEEAARLRDRLAALLRALA  442 (557)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            356799999999999999999999999999986544

>PRK14669 uvrC excinuclease ABC subunit C; Provisional

Probab=94.97  E-value=0.039  Score=56.80  Aligned_cols=36  Identities=31%  Similarity=0.295  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL  192 (259)
Q Consensus       157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~  192 (259)
                      -+..|+++|+.|.++.+||+||++||+|+.|+.-.+
T Consensus       204 l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~~~  239 (624)
T PRK14669        204 LARSLRARMEAAALEMQFELAAKYRDLITTVEELEE  239 (624)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence            356799999999999999999999999999987554

>PRK14672 uvrC excinuclease ABC subunit C; Provisional

Probab=94.66  E-value=0.049  Score=56.82  Aligned_cols=35  Identities=26%  Similarity=0.507  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhh
Q 024979          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAES  191 (259)
Q Consensus       157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~  191 (259)
                      -+..|+++|++|-++.+||+||++||+|+.|+.=.
T Consensus       206 ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~~~~  240 (691)
T PRK14672        206 TVARLEKRMKRAVRQEAFEAAARIRDDIQAIRCIT  240 (691)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            35679999999999999999999999999998544

>PRK14668 uvrC excinuclease ABC subunit C; Provisional

Probab=94.18  E-value=0.052  Score=55.37  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhh
Q 024979          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAES  191 (259)
Q Consensus       157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~  191 (259)
                      -+..|+.+|++|-++.+||+||++||+|+.|+.=.
T Consensus       200 ~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~~~  234 (577)
T PRK14668        200 LADPLRREMEAAAQAQEFERAANLRDRLEAVEAFH  234 (577)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            35679999999999999999999999999998644

>PRK14667 uvrC excinuclease ABC subunit C; Provisional

Probab=94.02  E-value=0.056  Score=55.11  Aligned_cols=36  Identities=25%  Similarity=0.207  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL  192 (259)
Q Consensus       157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~  192 (259)
                      -+..|+++|+.|-++.+||+||++||+|+.|+.-.+
T Consensus       200 l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~~~  235 (567)
T PRK14667        200 VLPELYDKIEEYSQKLMFEKAAVIRDQILALENLIK  235 (567)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence            456799999999999999999999999999987544

>PRK14670 uvrC excinuclease ABC subunit C; Provisional

Probab=93.89  E-value=0.061  Score=54.96  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL  192 (259)
Q Consensus       157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~  192 (259)
                      -+..|+.+|+.|-++.+||+||++||+|+.|+.=.+
T Consensus       178 ~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~~~~  213 (574)
T PRK14670        178 LLSQIEIKMKEAIQKEDFEAAIKLKETKRSLIEISQ  213 (574)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence            356799999999999999999999999999987554

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]

Probab=93.36  E-value=0.11  Score=53.22  Aligned_cols=74  Identities=23%  Similarity=0.206  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh--hhhHhh-hhhcccccccccCcEEEeeccCccEEEEcccc
Q 024979          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL--AASATA-LAFENARFAFRLGQKVNHKIFGYRAVICGMDP  230 (259)
Q Consensus       157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~--AaSa~a-l~~~n~~v~FrVGqVvrHr~ygYrGVIvgWDp  230 (259)
                      -+..|++++++|-+..+||.||++||+|..|+.=.+  +.+... ...+--.+++.-|....+..+-..|-++|=+.
T Consensus       203 v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~l~~~q~v~~~~~~~~Dv~a~~~~~~~~~v~vf~~R~Gkllg~~~  279 (581)
T COG0322         203 VLQELEEKMEEASENLDFERAARLRDQIKALEKLQEKQAVSLFKLQDLDVIAGAVDGGEACVQVFFVRGGKLLGRRA  279 (581)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccccccCCccchhhheeeecCCeEEEEEEEeecchhcCCcc
Confidence            356899999999999999999999999999986443  222211 12222223455555555555544466665443

>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein

Probab=89.38  E-value=0.47  Score=40.76  Aligned_cols=91  Identities=20%  Similarity=0.238  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhhhHhhhhhccccc--ccccCcE-EEeeccCccEE
Q 024979          148 KSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARF--AFRLGQK-VNHKIFGYRAV  224 (259)
Q Consensus       148 ~~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~AaSa~al~~~n~~v--~FrVGqV-vrHr~ygYrGV  224 (259)
                      ..+-..++.|+.+++++|...=..|||.+.|++|-++.+++++++..... +......+  .+..+-. +.=-.+-+-.+
T Consensus        39 ~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  117 (161)
T PF04420_consen   39 SKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKS-LSSEKSSFDKSLSKVLWVLTTLPFFVLRF  117 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHH--------------
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence            34455688899999999999889999999999999999999999854432 22222222  1111111 11111123344


Q ss_pred             EEcccccccCChhHH
Q 024979          225 ICGMDPVCCESSSWM  239 (259)
Q Consensus       225 IvgWDp~c~a~eeW~  239 (259)
                      +.+=.|++..|+.|.
T Consensus       118 ~~rk~pV~~lp~~~~  132 (161)
T PF04420_consen  118 WYRKTPVFYLPKGWF  132 (161)
T ss_dssp             ---------------
T ss_pred             eecCceEEEECchhh
Confidence            456678888888887

The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
1vbv_A	105	Hypothetical protein B0966; protein degradation, s	5e-13
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-04

>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1 Length = 105

 Score = 62.7 bits (152), Expect = 5e-13
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
           F +GQ+V H + GY  V+  +DPV   S    +   V       + P+Y V
Sbjct: 6   FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDE--LRAAPWYHV 54

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.4 bits (88), Expect = 6e-04
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 6/28 (21%)

Query: 181 RDQICKLEAESL---AA-SATALAFENA 204
           +  + KL+A SL   A  SA ALA   A
Sbjct: 19  KQALKKLQA-SLKLYADDSAPALAI-KA 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
1vbv_A	105	Hypothetical protein B0966; protein degradation, s	99.81
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	98.22
2d7d_A	661	Uvrabc system protein B; helicase, protein-DNA-ADP	96.93
1c4o_A	664	DNA nucleotide excision repair enzyme UVRB; uvrabc	96.42
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	90.13

>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1

Probab=99.81  E-value=6e-21  Score=152.50  Aligned_cols=52  Identities=31%  Similarity=0.555  Sum_probs=32.8

Q ss_pred             ccccccCcEEEeeccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979          205 RFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV  258 (259)
Q Consensus       205 ~v~FrVGqVvrHr~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV  258 (259)
                      .++|+|||||+||+|||+|||+||||+|+++++|+..|..+  .++++||||||
T Consensus         3 ~~kf~IGqvvrHr~~gyrGVI~d~Dp~~~~~eew~~~~~~~--~~~~~QPfYhV   54 (105)
T 1vbv_A            3 ASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVN--DELRAAPWYHV   54 (105)
T ss_dssp             CCSSCTTCEEEETTTCCEEEEEEEECC--------------------CCCEEEE
T ss_pred             cceecCCCEEEecccCCCEEEEeECcccCCCHHHHHhcccc--CccCCCCceEE
Confidence            56999999999999999999999999999999999999776  47999999997

>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*

Probab=96.93  E-value=0.00045  Score=68.33  Aligned_cols=38  Identities=24%  Similarity=0.467  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHh
Q 024979          153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE  190 (259)
Q Consensus       153 d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~  190 (259)
                      ++...|.+|+++|++|.++++||+||+|||+|++|+++
T Consensus       623 ~~~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~  660 (661)
T 2d7d_A          623 ERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE  660 (661)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence            46667889999999999999999999999999999865

>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*

Probab=96.42  E-value=0.00051  Score=68.01  Aligned_cols=39  Identities=33%  Similarity=0.378  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhh
Q 024979          153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES  191 (259)
Q Consensus       153 d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~  191 (259)
                      ++...|.+|+++|++|.++++||+||+|||+|++|++++
T Consensus       608 ~~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~~  646 (664)
T 1c4o_A          608 DLRERIAELELAMWQAAEALDFERAARLRDEIRALEARL  646 (664)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            356678889999999999999999999999999999876

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=90.13  E-value=0.32  Score=45.75  Aligned_cols=44  Identities=20%  Similarity=0.298  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhh
Q 024979          151 AQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAA  194 (259)
Q Consensus       151 a~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~Aa  194 (259)
                      -.++..+|.+++.+...++..+||++|++|++++..|+++++..
T Consensus       396 i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~  439 (468)
T 3pxg_A          396 LKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDT  439 (468)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            34577789999999999999999999999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d1vbva1	95	b.34.17.1 (A:3-97) Hypothetical protein YccV {Esch	5e-14
d1e52a_	56	a.2.9.1 (A:) C-terminal UvrC-binding domain of Uvr	0.001

>d1vbva1 b.34.17.1 (A:3-97) Hypothetical protein YccV {Escherichia coli [TaxId: 562]} Length = 95

class: All beta proteins
fold: SH3-like barrel
superfamily: YccV-like
family: YccV-like
domain: Hypothetical protein YccV
species: Escherichia coli [TaxId: 562]

 Score = 64.1 bits (156), Expect = 5e-14
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258
           F +GQ+V H + GY  V+  +DPV   S    +   V    +  + P+Y V
Sbjct: 4   FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR--AAPWYHV 52

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]} Length = 56

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESLAAS 195
           I  L   + +   +  +  AA +RDQ+ +L    +AAS
Sbjct: 19  IHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1vbva1	95	Hypothetical protein YccV {Escherichia coli [TaxId	99.83
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	98.36
d1fpoa2	95	HSC20 (HSCB), C-terminal oligomerisation domain {E	84.27

>d1vbva1 b.34.17.1 (A:3-97) Hypothetical protein YccV {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: YccV-like
family: YccV-like
domain: Hypothetical protein YccV
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=4.1e-22  Score=155.45  Aligned_cols=51  Identities=31%  Similarity=0.567  Sum_probs=32.0

Q ss_pred             cccccCcEEEeeccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979          206 FAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV  258 (259)
Q Consensus       206 v~FrVGqVvrHr~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV  258 (259)
                      .+|+|||||+||+|||+|||+||||+|.++++|+.+|+++.  ++++||||||
T Consensus         2 aKF~IGqivrHr~~~yrGVI~~wDp~~~~~~eW~~~~~~~~--~~r~QPfYhv   52 (95)
T d1vbva1           2 SKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVND--ELRAAPWYHV   52 (95)
T ss_dssp             CSSCTTCEEEETTTCCEEEEEEEECC--------------------CCCEEEE
T ss_pred             CccccCcEEEEeecCcCEEEEeeEEEecCCHHHHHhccccC--CCCCCCcEEE
Confidence            58999999999999999999999999999999999998875  6789999997

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=1.8e-07  Score=65.73  Aligned_cols=42  Identities=26%  Similarity=0.283  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhhh
Q 024979          154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAAS  195 (259)
Q Consensus       154 ~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~AaS  195 (259)
                      +...|..|+.+|+.|.++.+||+||.+||+|+.|++.+.++|
T Consensus        15 l~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l~~~s   56 (56)
T d1e52a_          15 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS   56 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            566789999999999999999999999999999999987654

>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: HSC20 (HSCB), C-terminal oligomerisation domain
family: HSC20 (HSCB), C-terminal oligomerisation domain
domain: HSC20 (HSCB), C-terminal oligomerisation domain
species: Escherichia coli [TaxId: 562]

Probab=84.27  E-value=0.92  Score=32.64  Aligned_cols=41  Identities=20%  Similarity=0.185  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhchhhHHHHH----------HhhhHHHHHHHhh
Q 024979          151 AQDKALSIIRLRADLQKAIDSENYALAA----------DLRDQICKLEAES  191 (259)
Q Consensus       151 a~d~~~~L~~Lk~~Lq~AIe~E~YE~AA----------~lRDeIr~Le~~~  191 (259)
                      ..+.+..+..+..++..++...+|+.|+          +|.++|+.++.++
T Consensus        42 ~~ei~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLkF~~kl~~ei~~~e~~L   92 (95)
T d1fpoa2          42 IKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQLEEKL   92 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            3456777888899999999999999998          5556666655543