Citrus Sinensis ID: 024980

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLASQGNKKGNGNEEDEAIEKMRKEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAEDLKQEGKIPADEPAILPPLPIIPKIEKRKPFYGTPQPKRLDFRDRDWDRERDRDFELMPPPGSQKREFTTPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLPQCQ
ccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEccccccccccEEEEEcccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEcccEEEccccccccEEEEEEccccccccccccccccccccccccccc
maiartgvyvDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGlasqgnkkgngneEDEAIEKMRKEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAEDLkqegkipadepailpplpiipkiekrkpfygtpqpkrldfrdrdwdrerdrdfelmpppgsqkrefttpmdvdqpidpneptycvchqvsfgdmiacdnencqggewfhyacvgltpetrfkgkwycptcrllpqcq
maiartgvyvddYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLasqgnkkgngnEEDEAIEKMRKEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAEDLKQegkipadepailpplpiipkiekrkpfygtpqpkrldfrdrdwdrerdrdfelmpppgsqkrefttPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTcrllpqcq
MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLASQGNKKGNGNEEDEAIEKMRKEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAEDLKQEGKipadepailpplpiipkiekRKPFYGTPQPKrldfrdrdwdrerdrdfelMPPPGSQKREFTTPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLPQCQ
***ARTGVYVDDYLEYASTLPAELQRLLNTIRE*****************YCL******************************DNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNF****************ILPPLPIIP***********************************************************PTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL****
***ARTGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQ*RQ********************************************EKVLLARQAYDIIDSHIKRLDEDLNNFAEDLKQEGKIP**********************************************************FTTPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL****
MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLASQ************AIEKMRKEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAEDLKQEGKIPADEPAILPPLPIIPKIEKRKPFYGTPQPKRLDFRDRDWDRERDRDFELMPPPGSQKREFTTPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLPQCQ
MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLASQGNKKGNGNEEDEAIEKMRKEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFA*************************************************************************DVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL**C*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAIARTGVYVDDYLEYASTLPAExxxxxxxxxxxxxxxxxxxxxTRQQTKYCLGLASQGNKKGNGNEEDEAIEKMRKEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAEDLKQEGKIPADEPAILPPLPIIPKIEKRKPFYGTPQPKRLDFRDRDWDRERDRDFELMPPPGSQKREFTTPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLPQCQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query259 2.2.26 [Sep-21-2011]
B3H615262 PHD finger protein ING2 O yes no 0.976 0.965 0.825 1e-116
Q9UNL4249 Inhibitor of growth prote yes no 0.911 0.947 0.350 6e-32
Q8C0D7249 Inhibitor of growth prote yes no 0.911 0.947 0.346 7e-32
Q5ZKY4249 Inhibitor of growth prote yes no 0.888 0.923 0.338 7e-31
Q8WYH8240 Inhibitor of growth prote no no 0.845 0.912 0.372 1e-29
Q3T095248 Inhibitor of growth prote yes no 0.907 0.947 0.350 1e-29
Q9D8Y8240 Inhibitor of growth prote no no 0.841 0.908 0.366 2e-28
Q9LIQ6234 PHD finger protein ING1 O no no 0.853 0.944 0.310 2e-24
Q9H160280 Inhibitor of growth prote no no 0.795 0.735 0.308 1e-20
Q9QXV3279 Inhibitor of growth prote no no 0.864 0.802 0.276 2e-20
>sp|B3H615|ING2_ARATH PHD finger protein ING2 OS=Arabidopsis thaliana GN=ING2 PE=1 SV=1 Back     alignment and function desciption
 Score =  418 bits (1075), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/264 (82%), Positives = 240/264 (90%), Gaps = 11/264 (4%)

Query: 1   MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLASQGN 60
           MAIARTGVYVDDYLEYAST PAELQRLLNT+RELDERS S+INQTRQQTKYCLGLASQ +
Sbjct: 1   MAIARTGVYVDDYLEYASTFPAELQRLLNTVRELDERSQSLINQTRQQTKYCLGLASQSS 60

Query: 61  KKGNGN-------EEDEAIEKMRKEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKRLDE 113
           KKGNGN       +E+E IEKMRKEIE +Q+NALSLCTEKVLLARQAYD+IDSH+KRLDE
Sbjct: 61  KKGNGNHYNNGGLDEEETIEKMRKEIESSQENALSLCTEKVLLARQAYDLIDSHVKRLDE 120

Query: 114 DLNNFAEDLKQEGKIPADEPAILPPLPIIPKIEKRKPFYGTPQPKRLDFRDRDWDRERDR 173
           DLNNFAEDLKQEGKIP DEP++LPPLPI+PK EKRK FYGTPQPK++D+RDR  D +RDR
Sbjct: 121 DLNNFAEDLKQEGKIPPDEPSVLPPLPIVPKAEKRKSFYGTPQPKKIDYRDR--DWDRDR 178

Query: 174 DFELMPPPGSQKREFTTPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYA 233
           DFELMPPPGS +++   P++ +QPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHY 
Sbjct: 179 DFELMPPPGSNRKDL-MPIE-EQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYT 236

Query: 234 CVGLTPETRFKGKWYCPTCRLLPQ 257
           CVGLTPETRFKGKWYCPTCRLLPQ
Sbjct: 237 CVGLTPETRFKGKWYCPTCRLLPQ 260
Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9UNL4|ING4_HUMAN Inhibitor of growth protein 4 OS=Homo sapiens GN=ING4 PE=1 SV=1 Back     alignment and function description
>sp|Q8C0D7|ING4_MOUSE Inhibitor of growth protein 4 OS=Mus musculus GN=Ing4 PE=1 SV=2 Back     alignment and function description
>sp|Q5ZKY4|ING4_CHICK Inhibitor of growth protein 4 OS=Gallus gallus GN=ING4 PE=2 SV=1 Back     alignment and function description
>sp|Q8WYH8|ING5_HUMAN Inhibitor of growth protein 5 OS=Homo sapiens GN=ING5 PE=1 SV=1 Back     alignment and function description
>sp|Q3T095|ING4_BOVIN Inhibitor of growth protein 4 OS=Bos taurus GN=ING4 PE=2 SV=1 Back     alignment and function description
>sp|Q9D8Y8|ING5_MOUSE Inhibitor of growth protein 5 OS=Mus musculus GN=Ing5 PE=1 SV=1 Back     alignment and function description
>sp|Q9LIQ6|ING1_ARATH PHD finger protein ING1 OS=Arabidopsis thaliana GN=ING1 PE=1 SV=1 Back     alignment and function description
>sp|Q9H160|ING2_HUMAN Inhibitor of growth protein 2 OS=Homo sapiens GN=ING2 PE=1 SV=2 Back     alignment and function description
>sp|Q9QXV3|ING1_MOUSE Inhibitor of growth protein 1 OS=Mus musculus GN=Ing1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
224144786271 predicted protein [Populus trichocarpa] 1.0 0.955 0.829 1e-129
255568938266 Inhibitor of growth protein, putative [R 0.992 0.966 0.842 1e-129
357508653263 Inhibitor of growth protein [Medicago tr 0.984 0.969 0.801 1e-123
359807165268 uncharacterized protein LOC100787916 [Gl 1.0 0.966 0.853 1e-123
359482117259 PREDICTED: PHD finger protein ING2-like 0.992 0.992 0.863 1e-120
147768694259 hypothetical protein VITISV_016186 [Viti 0.992 0.992 0.863 1e-120
388510808270 unknown [Lotus japonicus] 1.0 0.959 0.822 1e-118
224125880273 predicted protein [Populus trichocarpa] 1.0 0.948 0.830 1e-117
42571871262 PHD finger protein-like protein [Arabido 0.976 0.965 0.825 1e-114
449459596263 PREDICTED: PHD finger protein ING2-like 0.976 0.961 0.828 1e-113
>gi|224144786|ref|XP_002325414.1| predicted protein [Populus trichocarpa] gi|222862289|gb|EEE99795.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/270 (82%), Positives = 243/270 (90%), Gaps = 11/270 (4%)

Query: 1   MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLASQGN 60
           MAIARTGVYVDDYLEYA+TLPAELQRLLNTIRELD+RS SMINQTRQQT YCLGLASQ +
Sbjct: 1   MAIARTGVYVDDYLEYANTLPAELQRLLNTIRELDDRSQSMINQTRQQTNYCLGLASQSS 60

Query: 61  KKGNGN----------EEDEAIEKMRKEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKR 110
           KKGNG+          EED+A+EKMRK+IE NQDNAL LCTEKVLLARQAY++IDSHIKR
Sbjct: 61  KKGNGSIYNCYNTNNREEDDAVEKMRKDIEANQDNALILCTEKVLLARQAYELIDSHIKR 120

Query: 111 LDEDLNNFAEDLKQEGKIPADEPAILPPLP-IIPKIEKRKPFYGTPQPKRLDFRDRDWDR 169
           LDEDLNNFAEDLK EGK+  DEPAILPPLP I+PKIEKR+ FYGTPQ KR+DFRDR WDR
Sbjct: 121 LDEDLNNFAEDLKHEGKLSPDEPAILPPLPLIVPKIEKRRNFYGTPQSKRIDFRDRYWDR 180

Query: 170 ERDRDFELMPPPGSQKREFTTPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEW 229
           ERDRDFELMPPPGS K++FT P++ +QPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEW
Sbjct: 181 ERDRDFELMPPPGSHKKDFTVPVEAEQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEW 240

Query: 230 FHYACVGLTPETRFKGKWYCPTCRLLPQCQ 259
           FHY+CVGLTPETRFKGKWYCPTCR LPQ Q
Sbjct: 241 FHYSCVGLTPETRFKGKWYCPTCRNLPQFQ 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255568938|ref|XP_002525439.1| Inhibitor of growth protein, putative [Ricinus communis] gi|223535252|gb|EEF36929.1| Inhibitor of growth protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357508653|ref|XP_003624615.1| Inhibitor of growth protein [Medicago truncatula] gi|124365573|gb|ABN09807.1| Zinc finger, FYVE/PHD-type [Medicago truncatula] gi|355499630|gb|AES80833.1| Inhibitor of growth protein [Medicago truncatula] gi|388504770|gb|AFK40451.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|359807165|ref|NP_001241355.1| uncharacterized protein LOC100787916 [Glycine max] gi|255645062|gb|ACU23030.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359482117|ref|XP_003632714.1| PREDICTED: PHD finger protein ING2-like [Vitis vinifera] gi|297739750|emb|CBI29932.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147768694|emb|CAN71661.1| hypothetical protein VITISV_016186 [Vitis vinifera] Back     alignment and taxonomy information
>gi|388510808|gb|AFK43470.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224125880|ref|XP_002319698.1| predicted protein [Populus trichocarpa] gi|222858074|gb|EEE95621.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42571871|ref|NP_974026.1| PHD finger protein-like protein [Arabidopsis thaliana] gi|42571873|ref|NP_974027.1| PHD finger protein-like protein [Arabidopsis thaliana] gi|353558867|sp|B3H615.1|ING2_ARATH RecName: Full=PHD finger protein ING2; AltName: Full=Protein INHIBITOR OF GROWTH 2; Short=Protein AtING2 gi|222423321|dbj|BAH19636.1| AT1G54390 [Arabidopsis thaliana] gi|332194972|gb|AEE33093.1| PHD finger protein-like protein [Arabidopsis thaliana] gi|332194974|gb|AEE33095.1| PHD finger protein-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449459596|ref|XP_004147532.1| PREDICTED: PHD finger protein ING2-like [Cucumis sativus] gi|449510438|ref|XP_004163664.1| PREDICTED: PHD finger protein ING2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
TAIR|locus:2020063328 ING2 "INHIBITOR OF GROWTH 2" [ 0.845 0.667 0.686 1.9e-76
ZFIN|ZDB-GENE-050522-47250 ing4 "inhibitor of growth fami 0.227 0.236 0.682 1.7e-36
UNIPROTKB|Q5ZKY4249 ING4 "Inhibitor of growth prot 0.227 0.236 0.666 3.5e-36
UNIPROTKB|Q8WYH8240 ING5 "Inhibitor of growth prot 0.227 0.245 0.666 5.7e-36
DICTYBASE|DDB_G0284411324 dng1 "inhibitor of growth (ING 0.227 0.182 0.612 5.7e-36
FB|FBgn0032516285 CG9293 [Drosophila melanogaste 0.235 0.214 0.676 9.2e-36
UNIPROTKB|Q5ZJ84241 ING5 "Uncharacterized protein" 0.227 0.244 0.666 1.2e-35
UNIPROTKB|E2RJ78240 ING5 "Uncharacterized protein" 0.227 0.245 0.666 1.9e-35
ZFIN|ZDB-GENE-031016-1242 ing5a "inhibitor of growth fam 0.227 0.243 0.666 2.4e-35
ZFIN|ZDB-GENE-030616-462239 ing5b "inhibitor of growth fam 0.227 0.246 0.666 3.9e-35
TAIR|locus:2020063 ING2 "INHIBITOR OF GROWTH 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 158/230 (68%), Positives = 173/230 (75%)

Query:     1 MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLASQGN 60
             MAIARTGVYVDDYLEYAST PAELQRLLNT+RELDERS S+INQTRQQTKYCLGLASQ +
Sbjct:     1 MAIARTGVYVDDYLEYASTFPAELQRLLNTVRELDERSQSLINQTRQQTKYCLGLASQSS 60

Query:    61 KKGNGN-------EEDEAIEKMRKEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKRLDE 113
             KKGNGN       +E+E IEKMRKEIE +Q+NALSLCTEKVLLARQAYD+IDSH+KRLDE
Sbjct:    61 KKGNGNHYNNGGLDEEETIEKMRKEIESSQENALSLCTEKVLLARQAYDLIDSHVKRLDE 120

Query:   114 DLNNFAEDLKQEGKXXXXXXXXXXXXXXXXXXXXRKPFYGTPQPKXXXXXXXXXXXXXXX 173
             DLNNFAEDLKQEGK                    RK FYGTPQPK               
Sbjct:   121 DLNNFAEDLKQEGKIPPDEPSVLPPLPIVPKAEKRKSFYGTPQPKKIDYRDRDWDRDRDF 180

Query:   174 XXXXMPPPGSQKREFTTPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNEN 223
                 MPPPGS +++   P++ +QPIDPNEPTYCVCHQVSFGDMIACDNEN
Sbjct:   181 EL--MPPPGSNRKDLM-PIE-EQPIDPNEPTYCVCHQVSFGDMIACDNEN 226
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0035064 "methylated histone residue binding" evidence=IDA
ZFIN|ZDB-GENE-050522-47 ing4 "inhibitor of growth family, member 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKY4 ING4 "Inhibitor of growth protein 4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WYH8 ING5 "Inhibitor of growth protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284411 dng1 "inhibitor of growth (ING) family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0032516 CG9293 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ84 ING5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RJ78 ING5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031016-1 ing5a "inhibitor of growth family, member 5a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030616-462 ing5b "inhibitor of growth family, member 5b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UNL4ING4_HUMANNo assigned EC number0.35050.91110.9477yesno
B3H615ING2_ARATHNo assigned EC number0.82570.97680.9656yesno
Q5ZKY4ING4_CHICKNo assigned EC number0.33850.88800.9236yesno
Q8C0D7ING4_MOUSENo assigned EC number0.34660.91110.9477yesno
Q3T095ING4_BOVINNo assigned EC number0.35050.90730.9475yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
COG5034271 COG5034, TNG2, Chromatin remodeling protein, conta 6e-22
pfam12998104 pfam12998, ING, Inhibitor of growth proteins N-ter 1e-17
pfam0062851 pfam00628, PHD, PHD-finger 2e-07
smart0024947 smart00249, PHD, PHD zinc finger 9e-06
>gnl|CDD|227367 COG5034, TNG2, Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information 
 Score = 91.5 bits (227), Expect = 6e-22
 Identities = 65/270 (24%), Positives = 103/270 (38%), Gaps = 34/270 (12%)

Query: 10  VDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLASQGNKKGNGNEED 69
           ++D  ++ + +P+E       + E+D +   +I   RQ       +    ++     EE 
Sbjct: 7   LNDITDHLANVPSETDIRFTELSEIDAKVCDIIKNLRQMISILKKIIDLDSQTY---EEV 63

Query: 70  EAIEKMRKEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKRLDEDL-----NNFAEDLKQ 124
           E  + + KEI      A+ +  EK  LA +A  ++  H K LD+ +        A  ++ 
Sbjct: 64  E--DGLLKEIRELLLKAIYIQKEKSDLADRAEKLLRRHRKLLDDRIAKRPHEKVAARIEN 121

Query: 125 EGKIPADEP------AILPPLPIIPKIEKRKPFYGTPQPKRLDFRDRDWDRE-----RDR 173
                +         A              +    T   KR +  +           R+ 
Sbjct: 122 CHDAVSRLERNSYSSAARRSSGEHRSAASSQGSRHTKLKKRKNIHNLKRRSPELSSKREV 181

Query: 174 DFELMPPP----------GSQKREFTTPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNEN 223
            F L  P           G+      +     +     E  YC C QVS+G M+ACDN N
Sbjct: 182 SFTLESPSVPDTATRVKEGNNGGSTKSRGVSSEDNSEGEELYCFCQQVSYGQMVACDNAN 241

Query: 224 CQGGEWFHYACVGLTPETRFKGKWYCPTCR 253
           C+  EWFH  CVGL  +   KGKWYCP C+
Sbjct: 242 CK-REWFHLECVGL--KEPPKGKWYCPECK 268

Length = 271
>gnl|CDD|221887 pfam12998, ING, Inhibitor of growth proteins N-terminal histone-binding Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 259
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 100.0
KOG1973274 consensus Chromatin remodeling protein, contains P 100.0
PF12998105 ING: Inhibitor of growth proteins N-terminal histo 99.92
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.93
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.73
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 97.58
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.5
KOG0954 893 consensus PHD finger protein [General function pre 97.37
KOG1512381 consensus PHD Zn-finger protein [General function 97.2
KOG0956 900 consensus PHD finger protein AF10 [General functio 97.15
KOG4299 613 consensus PHD Zn-finger protein [General function 97.09
KOG1632 345 consensus Uncharacterized PHD Zn-finger protein [G 96.89
KOG0825 1134 consensus PHD Zn-finger protein [General function 96.62
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 96.27
KOG0383 696 consensus Predicted helicase [General function pre 95.44
COG5141 669 PHD zinc finger-containing protein [General functi 95.31
KOG1245 1404 consensus Chromatin remodeling complex WSTF-ISWI, 95.24
KOG0957 707 consensus PHD finger protein [General function pre 95.12
KOG1244336 consensus Predicted transcription factor Requiem/N 94.77
KOG0957 707 consensus PHD finger protein [General function pre 94.21
KOG1632345 consensus Uncharacterized PHD Zn-finger protein [G 93.4
KOG2752 345 consensus Uncharacterized conserved protein, conta 92.68
KOG1844 508 consensus PHD Zn-finger proteins [General function 92.38
PF1377190 zf-HC5HC2H: PHD-like zinc-binding domain 89.41
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 87.0
PF1334178 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85 85.96
PF07227 446 DUF1423: Protein of unknown function (DUF1423); In 80.9
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-38  Score=274.54  Aligned_cols=241  Identities=25%  Similarity=0.412  Sum_probs=151.0

Q ss_pred             chhhHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 024980            5 RTGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLASQGNKKGNGNEEDEAIEKMRKEIEVNQD   84 (259)
Q Consensus         5 ~~~~yLedfle~ie~LP~El~r~l~~IreLD~~~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~   84 (259)
                      .....|+||+|.|+|+|.|+.+.|++|.++|.++.++++.+.+.....+...+.++     +...+..+.+.+.|++.+-
T Consensus         2 d~~~~Lnd~~d~l~n~P~et~~~~t~l~~iD~k~~d~~k~l~q~~si~k~~~~~~~-----~t~~e~ed~l~k~i~Ell~   76 (271)
T COG5034           2 DLFPGLNDITDHLANVPSETDIRFTELSEIDAKVCDIIKNLRQMISILKKIIDLDS-----QTYEEVEDGLLKEIRELLL   76 (271)
T ss_pred             chhHHHHHHHHHHHhCChhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccc-----CccccchhHHHHHHHHHHH
Confidence            34567999999999999999999999999999999999988775442222222222     2334456788899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhCCCC----CCCCC-CCCCCC---CcccccccCCC
Q 024980           85 NALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAED-----LKQEGKIP----ADEPA-ILPPLP---IIPKIEKRKPF  151 (259)
Q Consensus        85 ~~~~lsdEKv~LA~q~~dlVdrhirrLD~dl~~~~~~-----L~~~~~~~----~~~~~-~~~~~~---~~~~~~~~~~~  151 (259)
                      .++.+..+|+.||+.+..+++||+++||..+++....     ++..+...    ....+ .....+   ..+.+.  ..+
T Consensus        77 ~a~~~~~~~~~l~d~~~~l~~Rh~~~~d~~~a~~~h~~~~~~ie~~~~~~s~~~~~~~ss~a~~ss~~~~saass--qgs  154 (271)
T COG5034          77 KAIYIQKEKSDLADRAEKLLRRHRKLLDDRIAKRPHEKVAARIENCHDAVSRLERNSYSSAARRSSGEHRSAASS--QGS  154 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchhhhcccccccccccc--ccc
Confidence            9999999999999999999999999999988764332     22211110    00000 000000   000000  000


Q ss_pred             CCCCCCccccccCCcc-----cccccccccCCCC-CCCC-------CccCCCCCCC--CCCCCCCCCcceecCCCCCCCc
Q 024980          152 YGTPQPKRLDFRDRDW-----DRERDRDFELMPP-PGSQ-------KREFTTPMDV--DQPIDPNEPTYCVCHQVSFGDM  216 (259)
Q Consensus       152 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~--~~~~~~~~~~~C~C~~~~~g~m  216 (259)
                      .-++..+|.+......     .+.+...++..++ ....       .-...++.+.  ..+...++++||+|++|+||+|
T Consensus       155 ~~t~~~~R~n~~~~k~~~p~~~S~r~~~~t~~sp~v~~t~t~v~e~~~~~s~~~~~vss~d~se~e~lYCfCqqvSyGqM  234 (271)
T COG5034         155 RHTKLKKRKNIHNLKRRSPELSSKREVSFTLESPSVPDTATRVKEGNNGGSTKSRGVSSEDNSEGEELYCFCQQVSYGQM  234 (271)
T ss_pred             cCchhHHHHhhcccccCCcchhhhccCCccCCCCCcccchhhhhcccCCCCccccCcCccccccCceeEEEecccccccc
Confidence            0011111111100000     0011111111000 0000       0000111111  1234567899999999999999


Q ss_pred             cccCCCCCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980          217 IACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL  255 (259)
Q Consensus       217 i~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~  255 (259)
                      |+|||++|+ +||||+.||||..+|  +|+||||+|...
T Consensus       235 VaCDn~nCk-rEWFH~~CVGLk~pP--KG~WYC~eCk~~  270 (271)
T COG5034         235 VACDNANCK-REWFHLECVGLKEPP--KGKWYCPECKKA  270 (271)
T ss_pred             eecCCCCCc-hhheeccccccCCCC--CCcEeCHHhHhc
Confidence            999999999 999999999999999  999999999864

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A Back     alignment and domain information
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
1wen_A71 Solution Structure Of Phd Domain In Ing1-Like Prote 1e-19
1weu_A91 Solution Structure Of Phd Domain In Ing1-Like Prote 3e-19
2k1j_A63 Plan Homeodomain Finger Of Tumour Supressor Ing4 Le 8e-19
2vnf_A60 Molecular Basis Of Histone H3k4me3 Recognition By I 1e-18
2m1r_A63 Phd Domain Of Ing4 N214d Mutant Length = 63 3e-18
2qic_A62 Crystal Structure Of The Ing1 Phd Finger In Complex 3e-17
1wes_A71 Solution Structure Of Phd Domain In Inhibitor Of Gr 1e-16
2g6q_A62 Crystal Structure Of Ing2 Phd Domain In Complex Wit 2e-16
2pnx_A55 The Phd Finger Of Ing4 In Complex With An H3k4me3 H 4e-15
3c6w_A59 Crystal Structure Of The Ing5 Phd Finger In Complex 3e-14
1x4i_A70 Solution Structure Of Phd Domain In Inhibitor Of Gr 2e-13
2jmi_A90 Nmr Solution Structure Of Phd Finger Fragment Of Ye 6e-11
4afl_A104 The Crystal Structure Of The Ing4 Dimerization Doma 4e-06
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein Bac25079 Length = 71 Back     alignment and structure 
Iteration: 1

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/58 (67%), Positives = 48/58 (82%), Gaps = 3/58 (5%)
Query: 195 DQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 252
           D P+DPNEPTYC+CHQVS+G+MI CDN +C   EWFH+ACVGLT  T+ +GKW+CP C
Sbjct: 8   DMPVDPNEPTYCLCHQVSYGEMIGCDNPDCS-IEWFHFACVGLT--TKPRGKWFCPRC 62
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein Bac25009 Length = 91 Back     alignment and structure
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4 Length = 63 Back     alignment and structure
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4 Length = 60 Back     alignment and structure
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant Length = 63 Back     alignment and structure
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With A Histone H3k4me3 Peptide Length = 62 Back     alignment and structure
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth Family, Member 1-Like Length = 71 Back     alignment and structure
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With H3k4me3 Peptide Length = 62 Back     alignment and structure
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone Peptide Length = 55 Back     alignment and structure
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With H3k4me3 Peptide Length = 59 Back     alignment and structure
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth Protein 3 (Ing3) Length = 70 Back     alignment and structure
>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast Yng1 Protein In Free State Length = 90 Back     alignment and structure
>pdb|4AFL|A Chain A, The Crystal Structure Of The Ing4 Dimerization Domain Reveals The Functional Organization Of The Ing Family Of Chromatin Binding Proteins. Length = 104 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
4afl_A104 P29ING4, inhibitor of growth protein 4; cell cycle 3e-26
1weu_A91 Inhibitor of growth family, member 4; structural g 3e-25
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 2e-24
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 7e-24
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 1e-23
1x4i_A70 Inhibitor of growth protein 3; structural genomics 2e-23
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 4e-22
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 6e-22
2k16_A75 Transcription initiation factor TFIID subunit 3; p 6e-17
1wem_A76 Death associated transcription factor 1; structura 5e-13
1wew_A78 DNA-binding family protein; structural genomics, P 2e-12
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 7e-11
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 1e-10
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 1e-10
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 2e-09
3o70_A68 PHD finger protein 13; PHF13, structural genomics 7e-09
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 7e-08
1we9_A64 PHD finger family protein; structural genomics, PH 8e-08
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 5e-07
1wee_A72 PHD finger family protein; structural genomics, PH 6e-07
3kv5_D 488 JMJC domain-containing histone demethylation prote 1e-06
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 2e-06
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 5e-06
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 4e-05
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 2e-04
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 3e-04
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 5e-04
2ri7_A 174 Nucleosome-remodeling factor subunit BPTF; zinc fi 6e-04
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 7e-04
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens} Length = 104 Back     alignment and structure
 Score = 97.7 bits (243), Expect = 3e-26
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 6   TGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLASQGNKKGNG 65
            G+Y++ YL+    LP ELQR    +R+LD+R+  +  +  +     +            
Sbjct: 2   AGMYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYM--------SSAR 53

Query: 66  NEEDEAIEKMRKEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKRLDEDL 115
           +   E    + K+I+           +KV LA Q Y+++D HI+RLD DL
Sbjct: 54  SLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDL 103
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65 Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
4afl_A104 P29ING4, inhibitor of growth protein 4; cell cycle 99.94
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 99.86
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 99.85
1weu_A91 Inhibitor of growth family, member 4; structural g 99.85
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 99.84
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 99.83
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 99.82
1x4i_A70 Inhibitor of growth protein 3; structural genomics 99.8
1wew_A78 DNA-binding family protein; structural genomics, P 99.74
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 99.66
3o70_A68 PHD finger protein 13; PHF13, structural genomics 99.58
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 99.58
1we9_A64 PHD finger family protein; structural genomics, PH 99.56
1wee_A72 PHD finger family protein; structural genomics, PH 99.53
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 99.53
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 99.53
1wem_A76 Death associated transcription factor 1; structura 99.5
2k16_A75 Transcription initiation factor TFIID subunit 3; p 99.48
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 99.4
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 99.32
2ri7_A 174 Nucleosome-remodeling factor subunit BPTF; zinc fi 99.32
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 99.32
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 99.26
3kv5_D 488 JMJC domain-containing histone demethylation prote 99.26
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 99.22
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 99.15
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 99.1
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 99.04
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 99.04
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 99.0
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 98.97
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 98.92
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 98.92
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 98.89
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 98.79
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 98.79
2yt5_A66 Metal-response element-binding transcription facto 98.78
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 98.75
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 98.74
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 98.65
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 98.46
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 98.44
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 98.42
3lqh_A 183 Histone-lysine N-methyltransferase MLL; PHD finger 98.37
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 98.37
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 98.35
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 98.19
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 97.9
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 97.81
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.75
3rsn_A 177 SET1/ASH2 histone methyltransferase complex subun; 97.64
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 97.47
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 97.19
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 97.17
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 97.12
3a1b_A159 DNA (cytosine-5)-methyltransferase 3A, histone H3; 94.76
2pv0_B 386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 93.7
2lq6_A87 Bromodomain-containing protein 1; PHD finger, meta 93.51
1wil_A89 KIAA1045 protein; ring finger domain, structural g 91.59
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 89.11
2xzr_A114 Immunoglobulin-binding protein EIBD; cell adhesion 86.08
1m1j_C 409 Fibrinogen gamma chain; coiled coils, disulfide ri 84.18
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens} Back     alignment and structure
Probab=99.94  E-value=5.5e-27  Score=181.02  Aligned_cols=102  Identities=31%  Similarity=0.567  Sum_probs=88.2

Q ss_pred             hhhHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 024980            6 TGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTK-YCLGLASQGNKKGNGNEEDEAIEKMRKEIEVNQD   84 (259)
Q Consensus         6 ~~~yLedfle~ie~LP~El~r~l~~IreLD~~~~~~~~~l~~~~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~   84 (259)
                      +|+|||+|+++|+|||.||+|+|++||+||.++++++.++++..+ |+...+        ++...++. ..+.+|++.|.
T Consensus         2 ~~~yledyld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~r~-~~l~~I~~~~~   72 (104)
T 4afl_A            2 AGMYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSAR--------SLSSEEKL-ALLKQIQEAYG   72 (104)
T ss_dssp             CCHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS--------CCCHHHHH-HHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCChhhhH-HHHHHHHHHHH
Confidence            679999999999999999999999999999999999999988764 654322        12334444 45589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980           85 NALSLCTEKVLLARQAYDIIDSHIKRLDEDLN  116 (259)
Q Consensus        85 ~~~~lsdEKv~LA~q~~dlVdrhirrLD~dl~  116 (259)
                      ++++++||||+||++||++||+|++|||.||+
T Consensus        73 ~~~~l~dEKv~lA~~~~dlvdkhirrLD~dla  104 (104)
T 4afl_A           73 KCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLA  104 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            99999999999999999999999999999873
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Back     alignment and structure
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd} Back     alignment and structure
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 259
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 2e-18
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 8e-17
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 1e-15
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 2e-12
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 1e-10
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 1e-10
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 3e-09
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 4e-07
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 7e-07
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 2e-04
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 3e-04
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.0 bits (184), Expect = 2e-18
 Identities = 38/65 (58%), Positives = 48/65 (73%), Gaps = 3/65 (4%)

Query: 189 TTPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWY 248
           ++    +  IDPNEPTYC+C+QVS+G+MI CDNE C   EWFH++CV LT +   KGKWY
Sbjct: 2   SSGSSGEFAIDPNEPTYCLCNQVSYGEMIGCDNEQCP-IEWFHFSCVSLTYKP--KGKWY 58

Query: 249 CPTCR 253
           CP CR
Sbjct: 59  CPKCR 63
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 99.77
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 99.76
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 99.51
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 99.42
d1wema_76 Death associated transcription factor 1, Datf1 (DI 99.25
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 99.15
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 99.06
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 98.98
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.97
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.89
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.76
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 92.69
d2v89a174 V(D)J recombination-activating protein 2, Rag2 {Mo 91.05
d1weqa_85 PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculu 85.93
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.7e-19  Score=127.80  Aligned_cols=61  Identities=62%  Similarity=1.342  Sum_probs=55.8

Q ss_pred             CCCCCCCCCcceecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccccCC
Q 024980          195 DQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLPQC  258 (259)
Q Consensus       195 ~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~~~  258 (259)
                      +.++|+++.+||+|+++..++||.|+++.|. ++|||+.||||+..|  .+.||||.|+...+.
T Consensus         8 ~~~~d~~e~~~CiC~~~~~~~~i~c~~~~C~-~~wfH~~Cvgl~~~p--~~~w~C~~C~~~~gp   68 (71)
T d1wesa_           8 EFAIDPNEPTYCLCNQVSYGEMIGCDNEQCP-IEWFHFSCVSLTYKP--KGKWYCPKCRGDSGP   68 (71)
T ss_dssp             CSCCCSSSCCCSTTCCCCCSSEECCSCTTCS-CCCEETTTTTCSSCC--SSCCCCTTTSSCCSC
T ss_pred             CCCcCCCCCCEEEeCCCCCCCEEEEECCCCC-CcCccCccCCCCcCC--CCcEECcCCccccCc
Confidence            5678999999999999999999999988998 799999999999999  889999999987764
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d2v89a1 g.50.1.2 (A:1414-1487) V(D)J recombination-activating protein 2, Rag2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weqa_ g.50.1.2 (A:) PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure