Citrus Sinensis ID: 025013

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MPPCCFVCRYSCHCRTRFSCCCKLPLVSMLIILMKILKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN
ccccEEEEcccccccccccEEcccccHHHHHHHHHHcccccccccccccccccccHHHHHcHHHHHHHHHHHcccccccccccccccccccHHHcHHHHHcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccccc
ccccEEEEEEccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHcccEEEEEEEEcccccccccEcccEcccccHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHccEEHcccccccccccccccHHHHHHHHHHcccccccccEEEcccccccccccHHHHHHHccccccHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccEEHHHcEccccccEcc
mppccfvcryschcrtrfscccklpLVSMLIILMKILKSPiltiikspactnlstcfnYYYYFFFgwgnvslaqlqfggpswkvrlgrrdsttasraaantsippptsnLSALISSFSAQGLSLKNMVALAGghtvgkarctsfrghiyndsnidTSFARSLQqrcprrgndnvlanldrqtptcfdnlyyknllnkkgllhsdqelfngnsADFLVKRYAASISVFFKDFARGMikmgnikpltgsagqirINCRKIN
MPPCCFVCRYSCHCRTRFSCCCKLPLVSMLIILMKILKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASraaantsippptsnLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQrcprrgndnvlanldrqtpTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMgnikpltgsagqirincrkin
MPPCCFVCRYSCHCRTRFSCCCKLPLVSMLIILMKILKSPILTIIKSPACTNLSTCfnyyyyfffGWGNVSLAQLQFGGPSWKVRLGrrdsttasraaantsIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDnlyyknllnkkgllHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN
***CCFVCRYSCHCRTRFSCCCKLPLVSMLIILMKILKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRL***************************ISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINC****
*PPCCFVCRYSCHCRTRFSCCCKLPLVSMLIILMKILKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCP**GNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN
MPPCCFVCRYSCHCRTRFSCCCKLPLVSMLIILMKILKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLG**************SIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN
MPPCCFVCRYSCHCRTRFSCCCKLPLVSMLIILMKILKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRK**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MPPCCFVCRYSCHCRTRFSCCCKLPLVSMLIILMKILKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query259 2.2.26 [Sep-21-2011]
A7NY33321 Peroxidase 4 OS=Vitis vin no no 0.706 0.570 0.627 4e-63
P22195316 Cationic peroxidase 1 OS= N/A no 0.714 0.585 0.572 4e-57
Q0D3N0314 Peroxidase 2 OS=Oryza sat no no 0.714 0.589 0.540 7e-56
A2YPX3314 Peroxidase 2 OS=Oryza sat N/A no 0.714 0.589 0.540 9e-56
Q9LVL2316 Peroxidase 67 OS=Arabidop yes no 0.714 0.585 0.590 2e-55
Q9FLC0324 Peroxidase 52 OS=Arabidop no no 0.714 0.570 0.561 2e-55
P00434296 Peroxidase P7 OS=Brassica N/A no 0.714 0.625 0.561 3e-55
A5H454320 Peroxidase 66 OS=Zea mays N/A no 0.706 0.571 0.551 1e-53
A5H452321 Peroxidase 70 OS=Zea mays N/A no 0.714 0.576 0.540 6e-53
A5H453321 Peroxidase 42 OS=Zea mays N/A no 0.706 0.570 0.545 2e-50
>sp|A7NY33|PER4_VITVI Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1 Back     alignment and function desciption
 Score =  241 bits (615), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 116/185 (62%), Positives = 138/185 (74%), Gaps = 2/185 (1%)

Query: 77  FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTV 136
            GGP W V+LGRRDS TAS + AN +IPPPTS+LS LIS F AQGLS ++MVAL+G HT+
Sbjct: 137 LGGPDWDVKLGRRDSKTASLSGANNNIPPPTSSLSNLISKFQAQGLSTRDMVALSGAHTI 196

Query: 137 GKARCTSFRGHIYNDSNIDTSFARSLQQRCPRR--GNDNVLANLDRQTPTCFDNLYYKNL 194
           G+ARCTSFR  IYN++NID+SFA++ Q  CP      DN LA LD QTPT FDN YYKNL
Sbjct: 197 GQARCTSFRARIYNETNIDSSFAKTRQASCPSASGSGDNNLAPLDLQTPTTFDNYYYKNL 256

Query: 195 LNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRIN 254
           +N+KGLLHSDQ L+NG S D  VK Y  +   F  DF  GMIKMG+I PLTGS G+IR +
Sbjct: 257 INQKGLLHSDQVLYNGGSTDSTVKTYVNNPKTFTSDFVAGMIKMGDITPLTGSEGEIRKS 316

Query: 255 CRKIN 259
           C K+N
Sbjct: 317 CGKVN 321
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Vitis vinifera (taxid: 29760)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|P22195|PER1_ARAHY Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2 Back     alignment and function description
>sp|Q0D3N0|PER2_ORYSJ Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112 PE=2 SV=1 Back     alignment and function description
>sp|A2YPX3|PER2_ORYSI Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX112 PE=3 SV=2 Back     alignment and function description
>sp|Q9LVL2|PER67_ARATH Peroxidase 67 OS=Arabidopsis thaliana GN=PER67 PE=2 SV=1 Back     alignment and function description
>sp|Q9FLC0|PER52_ARATH Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=2 SV=1 Back     alignment and function description
>sp|P00434|PERP7_BRARA Peroxidase P7 OS=Brassica rapa PE=1 SV=3 Back     alignment and function description
>sp|A5H454|PER66_MAIZE Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1 Back     alignment and function description
>sp|A5H452|PER70_MAIZE Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1 Back     alignment and function description
>sp|A5H453|PER42_MAIZE Peroxidase 42 OS=Zea mays GN=PER42 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
205326623318 peroxidase 1 [Litchi chinensis] 0.714 0.581 0.8 6e-83
383081963333 peroxidase 2 [Eucalyptus pilularis] gi|3 0.706 0.549 0.748 4e-75
383081969333 peroxidase 2 [Eucalyptus globulus subsp. 0.714 0.555 0.740 1e-74
383081965333 peroxidase 2 [Eucalyptus pilularis] 0.706 0.549 0.737 9e-74
88659656258 peroxidase [Eucalyptus globulus subsp. g 0.714 0.717 0.735 1e-73
357461493318 Peroxidase [Medicago truncatula] gi|3554 0.714 0.581 0.681 1e-68
116786481208 unknown [Picea sitchensis] 0.714 0.889 0.675 6e-68
89276748234 peroxidase [Litchi chinensis] 0.610 0.675 0.791 3e-67
388522125316 unknown [Lotus japonicus] 0.714 0.585 0.648 7e-67
356554632325 PREDICTED: peroxidase 4-like [Glycine ma 0.706 0.563 0.644 5e-66
>gi|205326623|gb|ACI03401.1| peroxidase 1 [Litchi chinensis] Back     alignment and taxonomy information
 Score =  313 bits (801), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 148/185 (80%), Positives = 165/185 (89%)

Query: 75  LQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGH 134
           +  GGPSWKVRLGRRDSTTASRA ANTSIPPPTSNLSALISSFSAQGLSLK++VAL+G H
Sbjct: 133 VHLGGPSWKVRLGRRDSTTASRALANTSIPPPTSNLSALISSFSAQGLSLKDLVALSGSH 192

Query: 135 TVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNL 194
           T+G ARCTSFRGH+YND+NID+SFA+SL+++CPR GNDNVLANLDRQTP CFD LYY NL
Sbjct: 193 TIGLARCTSFRGHVYNDTNIDSSFAQSLRRKCPRSGNDNVLANLDRQTPFCFDKLYYDNL 252

Query: 195 LNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRIN 254
           L KKGLLHSDQ+LF G SAD  VK+YA + S FFKDFA  M+KMGNIKPLTG AGQIRIN
Sbjct: 253 LKKKGLLHSDQQLFKGGSADPFVKKYANNTSAFFKDFAGAMVKMGNIKPLTGRAGQIRIN 312

Query: 255 CRKIN 259
           CRK+N
Sbjct: 313 CRKVN 317

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|383081963|dbj|BAM05634.1| peroxidase 2 [Eucalyptus pilularis] gi|383081967|dbj|BAM05636.1| peroxidase 2 [Eucalyptus pyrocarpa] Back     alignment and taxonomy information
>gi|383081969|dbj|BAM05637.1| peroxidase 2 [Eucalyptus globulus subsp. globulus] Back     alignment and taxonomy information
>gi|383081965|dbj|BAM05635.1| peroxidase 2 [Eucalyptus pilularis] Back     alignment and taxonomy information
>gi|88659656|gb|ABD47726.1| peroxidase [Eucalyptus globulus subsp. globulus] Back     alignment and taxonomy information
>gi|357461493|ref|XP_003601028.1| Peroxidase [Medicago truncatula] gi|355490076|gb|AES71279.1| Peroxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|116786481|gb|ABK24123.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|89276748|gb|ABD66594.1| peroxidase [Litchi chinensis] Back     alignment and taxonomy information
>gi|388522125|gb|AFK49124.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356554632|ref|XP_003545648.1| PREDICTED: peroxidase 4-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
TAIR|locus:2161283316 AT5G58390 [Arabidopsis thalian 0.714 0.585 0.484 5.9e-41
TAIR|locus:2153529324 PRX52 "peroxidase 52" [Arabido 0.702 0.561 0.472 8.7e-40
TAIR|locus:2161193325 AT5G58400 [Arabidopsis thalian 0.714 0.569 0.468 1.6e-38
TAIR|locus:2115335331 AT4G36430 [Arabidopsis thalian 0.702 0.549 0.436 8e-37
TAIR|locus:2053129338 AT2G18150 [Arabidopsis thalian 0.702 0.538 0.431 4.4e-36
TAIR|locus:2170204335 PA2 "peroxidase 2" [Arabidopsi 0.818 0.632 0.368 3.6e-34
TAIR|locus:2053139337 AT2G18140 [Arabidopsis thalian 0.702 0.540 0.421 1.2e-33
TAIR|locus:2080928344 AT3G50990 [Arabidopsis thalian 0.702 0.529 0.410 4.1e-33
TAIR|locus:2154925336 AT5G66390 [Arabidopsis thalian 0.702 0.541 0.4 1.1e-32
UNIPROTKB|Q9LEH3327 pod "Peroxidase 15" [Ipomoea b 0.818 0.648 0.359 4.7e-32
TAIR|locus:2161283 AT5G58390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 91/188 (48%), Positives = 113/188 (60%)

Query:    75 LQFGGPSWKVRLGXXXXXXXXXXXXXXX-IPPPTSNLSALISSFSAQGLSLKNMVALAGG 133
             L  GGP W V+LG                IPPP + LS LI+ F AQGLS ++MVAL+G 
Sbjct:   129 LLLGGPGWSVKLGRRDSTTANFAAANSGVIPPPITTLSNLINRFKAQGLSTRDMVALSGA 188

Query:   134 HTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGN--DNVLANLDRQTPTCFDXXXX 191
             HT+G+A+C +FR  IYN SNIDTSFA S ++ CP      DN  ANLD ++P  FD    
Sbjct:   189 HTIGRAQCVTFRNRIYNASNIDTSFAISKRRNCPATSGSGDNKKANLDVRSPDRFDHGFY 248

Query:   192 XXXXXXXXXXHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQI 251
                        SDQ LFN    D LV  Y+ +++ F++DFAR MIKMG+I PLTGS GQI
Sbjct:   249 KQLLSKKGLLTSDQVLFNNGPTDSLVIAYSHNLNAFYRDFARAMIKMGDISPLTGSNGQI 308

Query:   252 RINCRKIN 259
             R NCR+ N
Sbjct:   309 RQNCRRPN 316
GO:0004601 "peroxidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2153529 PRX52 "peroxidase 52" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161193 AT5G58400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115335 AT4G36430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053129 AT2G18150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170204 PA2 "peroxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053139 AT2G18140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080928 AT3G50990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154925 AT5G66390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9LEH3 pod "Peroxidase 15" [Ipomoea batatas (taxid:4120)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.70.824
3rd Layer1.11.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 1e-90
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 3e-33
pfam00141180 pfam00141, peroxidase, Peroxidase 1e-21
cd00314255 cd00314, plant_peroxidase_like, Heme-dependent per 2e-19
cd00691253 cd00691, ascorbate_peroxidase, Ascorbate peroxidas 5e-15
PLN02879251 PLN02879, PLN02879, L-ascorbate peroxidase 5e-12
PLN02364250 PLN02364, PLN02364, L-ascorbate peroxidase 1 4e-10
PLN02608289 PLN02608, PLN02608, L-ascorbate peroxidase 1e-08
cd08201264 cd08201, plant_peroxidase_like_1, Uncharacterized 4e-08
TIGR00198 716 TIGR00198, cat_per_HPI, catalase/peroxidase HPI 0.004
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  269 bits (690), Expect = 1e-90
 Identities = 92/196 (46%), Positives = 126/196 (64%), Gaps = 12/196 (6%)

Query: 70  VSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVA 129
           V LA    GGPS++V LGRRD    S A    ++P P  ++S LIS F+++GL++ ++VA
Sbjct: 108 VVLA----GGPSYEVPLGRRDGR-VSSANDVGNLPSPFFSVSQLISLFASKGLTVTDLVA 162

Query: 130 LAGGHTVGKARCTSFRGHIYN-------DSNIDTSFARSLQQRCPRRGNDNVLANLDRQT 182
           L+G HT+G+A C+SF   +YN       D  +D ++A  L+++CP  G+D+ L  LD  T
Sbjct: 163 LSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGT 222

Query: 183 PTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIK 242
           P  FDN YYKNLL  +GLL SDQ L +      +V RYAA+   FF+DFA  M+KMGNI 
Sbjct: 223 PNTFDNSYYKNLLAGRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIG 282

Query: 243 PLTGSAGQIRINCRKI 258
            LTGS G+IR NCR +
Sbjct: 283 VLTGSQGEIRKNCRVV 298

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>gnl|CDD|173825 cd00691, ascorbate_peroxidase, Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|166005 PLN02364, PLN02364, L-ascorbate peroxidase 1 Back     alignment and domain information
>gnl|CDD|178218 PLN02608, PLN02608, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|173829 cd08201, plant_peroxidase_like_1, Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>gnl|CDD|232870 TIGR00198, cat_per_HPI, catalase/peroxidase HPI Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 259
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PLN02608289 L-ascorbate peroxidase 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
PLN02879251 L-ascorbate peroxidase 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 100.0
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 100.0
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 100.0
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 99.97
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 99.94
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 99.94
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.89
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.51
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.9e-73  Score=526.46  Aligned_cols=217  Identities=33%  Similarity=0.590  Sum_probs=205.1

Q ss_pred             hhchhhhhhccC---CCCCCCCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccchhccccCCCCCCCCCHHH
Q 025013           36 ILKSPILTIIKS---PACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSA  112 (259)
Q Consensus        36 ~~~~~vi~~~k~---~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~  112 (259)
                      +.++++||.||+   ++||++||||||||||      +++||+++|||.|+|++||||+++|.+++++ +||+|+.++++
T Consensus        93 l~Gf~~i~~iK~~~e~~CPg~VSCADilalA------arDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~  165 (324)
T PLN03030         93 LRGYDVIDDAKTQLEAACPGVVSCADILALA------ARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDV  165 (324)
T ss_pred             cchHHHHHHHHHHHHhhCCCcccHHHHHHHH------hhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHH
Confidence            578999999999   7899999999999996      8999999999999999999999999877775 89999999999


Q ss_pred             HHHHHHHcCCChHHHHHHhcCcccccccccccCccccC--------CCCCCHHHHHHhhccCCCCCCCCccccCCCCCCc
Q 025013          113 LISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN--------DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPT  184 (259)
Q Consensus       113 l~~~F~~~Gls~~d~VaLsGaHTiG~~hc~~f~~Rl~~--------dp~ld~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~  184 (259)
                      |++.|+++||+.+|||+|+||||||++||.+|.+||||        ||+||+.|+..|+..||..+.+.+.+++|+.||.
T Consensus       166 l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~  245 (324)
T PLN03030        166 QKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSN  245 (324)
T ss_pred             HHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCc
Confidence            99999999999999999999999999999999999995        8999999999999999964433346889999999


Q ss_pred             ccchHHHHHhhcccccccchhhhhcCcchHHHHHHHhhCH----HHHHHHHHHHHHHhhcCCCCCCCCCcccccCccCC
Q 025013          185 CFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASI----SVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN  259 (259)
Q Consensus       185 ~FDn~Yy~~ll~~~glL~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~KM~~lgvltG~~GeIR~~C~~vN  259 (259)
                      +|||+||+||+.++|+|+|||+|+.|++|+.+|++||.|+    +.|+++|++||+|||+|+|+||.+||||++|+.+|
T Consensus       246 ~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN  324 (324)
T PLN03030        246 RFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN  324 (324)
T ss_pred             ccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence            9999999999999999999999999999999999999874    59999999999999999999999999999999998

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
1sch_A294 Peanut Peroxidase Length = 294 1e-43
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 4e-35
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 7e-32
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 2e-30
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 2e-30
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 8e-30
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 1e-29
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 1e-29
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 1e-29
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 1e-29
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 1e-29
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 1e-29
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 1e-29
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 2e-29
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 2e-29
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 4e-29
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 3e-28
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 4e-20
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 3e-18
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure 
Iteration: 1

 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 108/185 (58%)
Query: 75  LQFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGH 134
           +  GG SW V LG               +P P  NLS LIS+FS +G + K +V L+G H
Sbjct: 110 VALGGASWNVLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAH 169
Query: 135 TVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXXXXX 194
           T+G+A+CT+FR  IYN+SNID ++A+SLQ  CP  G D  L+  D  TP  FD       
Sbjct: 170 TIGQAQCTAFRTRIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINL 229
Query: 195 XXXXXXXHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRIN 254
                  HSDQ+LFNG S D  V  Y+ + + F  DF   MIKMGN+ PLTG++GQIR N
Sbjct: 230 RNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTN 289
Query: 255 CRKIN 259
           CRK N
Sbjct: 290 CRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 1e-108
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 1e-103
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 1e-103
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 1e-102
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 1e-102
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 1e-101
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 1e-97
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 1e-68
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 3e-44
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 4e-41
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 2e-40
2e39_A344 Peroxidase; heme protein, coordination geometry of 2e-38
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 6e-38
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 1e-37
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 1e-16
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 1e-13
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
 Score =  313 bits (805), Expect = e-108
 Identities = 106/182 (58%), Positives = 131/182 (71%)

Query: 78  GGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVG 137
           GG SW V LGRRDSTTAS ++AN+ +P P  NLS LIS+FS +G + K +V L+G HT+G
Sbjct: 113 GGASWNVLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIG 172

Query: 138 KARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNK 197
           +A+CT+FR  IYN+SNID ++A+SLQ  CP  G D  L+  D  TP  FDN YY NL NK
Sbjct: 173 QAQCTAFRTRIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNK 232

Query: 198 KGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRK 257
           KGLLHSDQ+LFNG S D  V  Y+ + + F  DF   MIKMGN+ PLTG++GQIR NCRK
Sbjct: 233 KGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRK 292

Query: 258 IN 259
            N
Sbjct: 293 TN 294
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* Length = 271 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ... Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 100.0
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 99.97
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=7.3e-76  Score=539.33  Aligned_cols=218  Identities=35%  Similarity=0.607  Sum_probs=209.6

Q ss_pred             hhchhhhhhccC---CCCCCCCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccchhccccCCCCCCCCCHHH
Q 025013           36 ILKSPILTIIKS---PACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSA  112 (259)
Q Consensus        36 ~~~~~vi~~~k~---~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~  112 (259)
                      +.++||||+||+   ++||++||||||||||      +++||+++|||.|+|++||+|+++++.++++++||+|+.++++
T Consensus        74 lrgf~vid~iK~~le~~Cp~~VScADilalA------ardav~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~  147 (304)
T 3hdl_A           74 LRGFEVITAAKSAVEAACPQTVSCADILAFA------ARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQ  147 (304)
T ss_dssp             CCCHHHHHHHHHHHHHHSTTTSCHHHHHHHH------HHHHHHHHHCCCCCCEECCCBCSCCCHHHHHHHSCCTTCCHHH
T ss_pred             hHHHHHHHHHHHHHHhhCCCCccHHHHHHHH------HhhhhhccCCCccccccCccCCCCCCccccccCCCCCCCCHHH
Confidence            468999999999   5799999999999996      8999999999999999999999999988888889999999999


Q ss_pred             HHHHHHHcCCChHHHHHHhcCcccccccccccCccccC-------CCCCCHHHHHHhhccCCCCCC--CCccccCCCCCC
Q 025013          113 LISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN-------DSNIDTSFARSLQQRCPRRGN--DNVLANLDRQTP  183 (259)
Q Consensus       113 l~~~F~~~Gls~~d~VaLsGaHTiG~~hc~~f~~Rl~~-------dp~ld~~~~~~L~~~Cp~~~~--~~~~~~lD~~Tp  183 (259)
                      |++.|++|||+++|||||+||||||++||.+|.+||||       ||+||+.|++.|+..||.+++  +.+.++||+.||
T Consensus       148 l~~~F~~~Gl~~~d~VaLsGaHTiG~ahC~~f~~Rly~f~~~~~~DP~ld~~~a~~L~~~Cp~~~~~~~~~~~~lD~~TP  227 (304)
T 3hdl_A          148 LINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITP  227 (304)
T ss_dssp             HHHHHHTTTCCHHHHHHHGGGGGSSEEEGGGTGGGTSSCSSSSSSCTTSCHHHHHHHHHHSCTTCCTTSCCEEESCSSST
T ss_pred             HHHHHHHcCCCHHHhhhhhccccccccccchhhhhhcccCCCCCCCCcccHHHHHHHhccCCCCCCCCCccccCCCCCCc
Confidence            99999999999999999999999999999999999985       899999999999999998655  666789999999


Q ss_pred             cccchHHHHHhhcccccccchhhhhcCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCcccccCccCC
Q 025013          184 TCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN  259 (259)
Q Consensus       184 ~~FDn~Yy~~ll~~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgvltG~~GeIR~~C~~vN  259 (259)
                      .+|||+||+||+.++|||+|||+|+.|++|+++|++||.|+++|+++|++||+||++|+|+||++||||++|++||
T Consensus       228 ~~FDN~Yy~nL~~~~glL~SDq~L~~d~~t~~~V~~yA~~~~~F~~~Fa~AmvKmg~igv~tg~~GeIR~~C~~~N  303 (304)
T 3hdl_A          228 SVLDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVN  303 (304)
T ss_dssp             TSCSTHHHHHHHTTCCCSHHHHGGGSSHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC
T ss_pred             ccccHHHHHHHHhCcCCCCCCHHHhcCccHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCCCCCCCeeeCCccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 259
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 3e-66
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 3e-64
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 2e-62
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 8e-62
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 3e-58
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 4e-57
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 2e-39
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 5e-37
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 2e-36
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 7e-29
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 5e-26
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 1e-21
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

 Score =  206 bits (524), Expect = 3e-66
 Identities = 89/192 (46%), Positives = 121/192 (63%), Gaps = 9/192 (4%)

Query: 77  FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTV 136
            GGP W V LGRRDS TA+R  AN ++P P  NL+ L +SF+ QGL+  ++V L+GGHT 
Sbjct: 112 GGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTF 171

Query: 137 GKARCTSFRGHIYN-------DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNL 189
           G+ARC++F   +YN       D  ++T++   L+ RCP+    + L NLD  TP  FDN 
Sbjct: 172 GRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNR 231

Query: 190 YYKNLLNKKGLLHSDQELFNGNSADF--LVKRYAASISVFFKDFARGMIKMGNIKPLTGS 247
           YY NLL   GLL SDQELF+   AD   +V  ++++ + FF +F   MIKMGNI  LTG 
Sbjct: 232 YYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGD 291

Query: 248 AGQIRINCRKIN 259
            G+IR+ C  +N
Sbjct: 292 EGEIRLQCNFVN 303
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.97
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.96
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.96
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.96
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.96
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.96
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.94
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.94
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.91
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=4.8e-71  Score=506.12  Aligned_cols=218  Identities=43%  Similarity=0.762  Sum_probs=209.3

Q ss_pred             hhchhhhhhccC---CCCCCCCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccchhccccCCCCCCCCCHHH
Q 025013           36 ILKSPILTIIKS---PACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSA  112 (259)
Q Consensus        36 ~~~~~vi~~~k~---~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~  112 (259)
                      +.++++||.||+   .+||++||||||||||      +++||+++|||.|+|++||+|+++|+..+++.+||.|+.++++
T Consensus        74 ~~g~~~id~iK~~le~~cp~~VScADIlalA------ardAv~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~  147 (304)
T d1fhfa_          74 IRGLDVVNDIKTAVENSCPDTVSCADILAIA------AEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQ  147 (304)
T ss_dssp             CCCHHHHHHHHHHHHTTSTTTSCHHHHHHHH------HHHHHHTTTCCCCCCCBCCCBCSCCCHHHHHHHSCCTTCCHHH
T ss_pred             chhHHHHHHHHHHHHhhCCCccCHHHHHHHH------HhhhhhhcCCCcccccCCCcCcCccccccccccCCCCCCCHHH
Confidence            468899999998   7899999999999996      8999999999999999999999999888787889999999999


Q ss_pred             HHHHHHHcCCChHHHHHHhcCcccccccccccCccccC-------CCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcc
Q 025013          113 LISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN-------DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTC  185 (259)
Q Consensus       113 l~~~F~~~Gls~~d~VaLsGaHTiG~~hc~~f~~Rl~~-------dp~ld~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~  185 (259)
                      |++.|++||||.+|||||+||||||++||.+|.+|+|+       ||.+|+.|+..|+..||.++.+.+++++|..||.+
T Consensus       148 l~~~F~~~Gl~~~d~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~L~~~c~~~~~~~~~~~~d~~tp~~  227 (304)
T d1fhfa_         148 LKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQ  227 (304)
T ss_dssp             HHHHHHHTTCCHHHHHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHHHHHHSCSSCSSCCEEESCSSSTTS
T ss_pred             HHHHHHHcCCCHHHHHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHHHHHhcCCCCCCCcccccCCCCCCc
Confidence            99999999999999999999999999999999999985       88999999999999999877777889999999999


Q ss_pred             cchHHHHHhhcccccccchhhhhcCc--chHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCcccccCccCC
Q 025013          186 FDNLYYKNLLNKKGLLHSDQELFNGN--SADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN  259 (259)
Q Consensus       186 FDn~Yy~~ll~~~glL~SD~~L~~d~--~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgvltG~~GeIR~~C~~vN  259 (259)
                      |||+||++++.++|+|+|||+|+.|+  +|+.+|++||.|+++|+++|++||+||++|+||||.+||||++|+++|
T Consensus       228 fDn~Yy~~l~~~~glL~SD~~L~~dp~~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~lgv~tg~~GeiR~~C~~~N  303 (304)
T d1fhfa_         228 FDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVN  303 (304)
T ss_dssp             CSTHHHHHHHTTCCSSHHHHTTTSSTTCSSHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC
T ss_pred             cccHHHHHHhhcCcccHhhHHHHhCCCchHHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccCcccCcC
Confidence            99999999999999999999999996  799999999999999999999999999999999999999999999998
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure