Citrus Sinensis ID: 025023


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MGSRDEVVEIDSLEKGLLSDNGIEREDDDDVLYTASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRKAVLTRLSNMTNEVFSREASAIEDVQNPKRSLSSITSMSPSKPSRHDLSHSGDQVVLQKLEEVGSSVKRVQALIEEQCGQTSDSLVEETR
ccccccHHHHHcccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEccEEEEEEEcccccccccEEEEEcEEEcccEEEEEEEHHHHHHHHccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHcccHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcc
ccccccEEEHHHHHHHHccccccccccccHEEEEccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccEEEEEEcccccccccHEEEEEEcccHHHHHEEEEEcccHHHEEEEEEEEEEEEcccccccccEEEEEEccHHHHHHHHHHHHHHcHHHccccccccccccccccccccHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcc
MGSRDEVVEIDSlekgllsdngiereddddvlytASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRYILRKDIrsrklfltpnaivykvtrpvpfpcfgvlkkekhvllpsVQDIVIEQGYLQSLFGVYSLrienvgvrrppsddvqiqgvanpsDFRKAVLTRLSNMTNEVFSREASaiedvqnpkrslssitsmspskpsrhdlshsgdQVVLQKLEEVGSSVKRVQALIEEQCGQTSDSLVEETR
mgsrdevvEIDSlekgllsdngieredDDDVLYTASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRYILRKdirsrklfltpnaivykvtrPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGvrrppsddvqiqgvanpsdFRKAVLTRLSNMTNEVFSreasaiedvqnpkrslsSITSMSPSKPSRHDLSHSGDQVVLQKLEEVGSSVKRVQALieeqcgqtsdslveetr
MGSRDEVVEIDSLEKGLLSDNGIEREDDDDVLYTASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRKAVLTRLSNMTNEVFSREASAIEDVQNPKRslssitsmspskpsRHDLSHSGDQVVLQKLEEVGSSVKRVQALIEEQCGQTSDSLVEETR
*****************************DVLYTASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVR*********************VL**************************************************************************************
***************************DDDVLYTASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLR****************QGVANPSDFRKAVLTRLS**********************************************VVLQKLEEVGSSVKRVQ*******************
*********IDSLEKGLLSDNGIEREDDDDVLYTASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRKAVLTRLSNMTNEVFSREASAI*****************************GDQVVLQKLEEVGSSVKRVQALIEEQC************
*****EVVEIDSLEKGLLSD**IEREDDDDVLYTASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRKAVLTRLSNMTN*V************************************SGDQVVLQKLEEVGSSVKRVQALIEEQCG***********
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGSRDEVVEIDSLEKGLLSDNGIEREDDDDVLYTASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRKAVLTRLSNMTNEVFSREASAIEDVQNPKRSLSSITSMSPSKPSRHDLSHSGDQVVLQKLEEVGSSVKRVQALIEEQCGQTSDSLVEETR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
255550357295 conserved hypothetical protein [Ricinus 0.984 0.864 0.720 1e-101
359484620260 PREDICTED: uncharacterized protein LOC10 0.980 0.976 0.722 1e-98
224068522259 predicted protein [Populus trichocarpa] 0.965 0.965 0.719 2e-98
356556412246 PREDICTED: uncharacterized protein LOC10 0.945 0.995 0.704 5e-98
255637412246 unknown [Glycine max] 0.945 0.995 0.692 6e-95
147819579 417 hypothetical protein VITISV_026889 [Viti 0.915 0.568 0.723 7e-93
449452604250 PREDICTED: uncharacterized protein LOC10 0.945 0.98 0.682 4e-91
388522625242 unknown [Lotus japonicus] 0.918 0.983 0.679 6e-91
108862867245 expressed protein [Oryza sativa Japonica 0.895 0.946 0.54 1e-69
222617338250 hypothetical protein OsJ_36601 [Oryza sa 0.895 0.928 0.529 6e-68
>gi|255550357|ref|XP_002516229.1| conserved hypothetical protein [Ricinus communis] gi|223544715|gb|EEF46231.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/261 (72%), Positives = 218/261 (83%), Gaps = 6/261 (2%)

Query: 1   MGSRDEVVEIDSLEKGLLSDN--GIERE---DDDDVLYTASFQEKEDNFVQYQTAQWVLY 55
           MG+ DEV EID+LE+GLLS++  G E+    DDD VLYTASF+E E+ FV+YQTAQWV+Y
Sbjct: 1   MGTVDEVAEIDNLERGLLSESCGGNEKSEGTDDDTVLYTASFREMEEKFVKYQTAQWVIY 60

Query: 56  SLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKE 115
           SLLLILAWG+GLFMLLYLPVRRYILRKDI+SRKLFLTPNAIVYKVT+PV FPCFGVL KE
Sbjct: 61  SLLLILAWGMGLFMLLYLPVRRYILRKDIQSRKLFLTPNAIVYKVTKPVAFPCFGVLHKE 120

Query: 116 KHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRKAVLTR 175
           KHVLLPSV DI+IEQGYLQSLFGVYS+RIEN GVRRPPSDDVQIQG+ANP  F+KAVLT+
Sbjct: 121 KHVLLPSVADIIIEQGYLQSLFGVYSVRIENAGVRRPPSDDVQIQGIANPRAFKKAVLTQ 180

Query: 176 LSNMTNEVFSREASAIEDVQNPKRSLSSITSMSPSKPSRHDL-SHSGDQVVLQKLEEVGS 234
           LS++ +E+ SR+ S IED+ + +   SS   MSP KP RHDL   SGD V+LQKLEEVG+
Sbjct: 181 LSHIKSEIVSRQVSTIEDIPSLRLGHSSSPWMSPMKPQRHDLIPGSGDLVLLQKLEEVGN 240

Query: 235 SVKRVQALIEEQCGQTSDSLV 255
           SVKRVQ LIEE+    S  L+
Sbjct: 241 SVKRVQTLIEEKHHSQSSELM 261




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484620|ref|XP_002277580.2| PREDICTED: uncharacterized protein LOC100256095 [Vitis vinifera] gi|297738523|emb|CBI27768.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224068522|ref|XP_002326138.1| predicted protein [Populus trichocarpa] gi|222833331|gb|EEE71808.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356556412|ref|XP_003546520.1| PREDICTED: uncharacterized protein LOC100815806 [Glycine max] Back     alignment and taxonomy information
>gi|255637412|gb|ACU19034.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|147819579|emb|CAN76563.1| hypothetical protein VITISV_026889 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449452604|ref|XP_004144049.1| PREDICTED: uncharacterized protein LOC101212805 [Cucumis sativus] gi|449530786|ref|XP_004172373.1| PREDICTED: uncharacterized LOC101212805 [Cucumis sativus] Back     alignment and taxonomy information
>gi|388522625|gb|AFK49374.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|108862867|gb|ABA99680.2| expressed protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|222617338|gb|EEE53470.1| hypothetical protein OsJ_36601 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

No hits with e-value below 0.001 by BLAST


Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
pfam0370379 pfam03703, DUF304, Bacterial PH domain 0.002
>gnl|CDD|202729 pfam03703, DUF304, Bacterial PH domain Back     alignment and domain information
 Score = 36.0 bits (84), Expect = 0.002
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 110 GVLKKEKHVL-LPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDF 168
           GVL ++   + L  +Q + +EQ  +Q L G+ ++ I+  G        + +  V    + 
Sbjct: 18  GVLGRKTTDIPLSRIQSVSLEQSPIQRLLGLGTIVIDTAGGSVEVK--LPLLSVPEAEEL 75

Query: 169 RKAV 172
           R  +
Sbjct: 76  RDYL 79


Domain found in uncharacterized family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices. Members of this family have a PH domain like structure. Length = 79

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 259
COG3402161 Uncharacterized conserved protein [Function unknow 99.31
PF0370380 bPH_2: Bacterial PH domain; InterPro: IPR005182 A 99.24
COG3428 494 Predicted membrane protein [Function unknown] 98.64
COG3428494 Predicted membrane protein [Function unknown] 98.01
PF1447096 bPH_3: Bacterial PH domain 83.92
>COG3402 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
Probab=99.31  E-value=7.6e-12  Score=107.99  Aligned_cols=76  Identities=14%  Similarity=0.239  Sum_probs=62.1

Q ss_pred             eeEeeccceEeeecCCccccccccceeeEEEeCCCeeeEEEeehhhhhhhcceeEEEEeccCCCCCCCCeeeecC--CCh
Q 025023           88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGV--ANP  165 (259)
Q Consensus        88 kl~vt~~~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr~FGl~slrIETAG~s~~~~~di~I~Gv--~~p  165 (259)
                      .|.+.|+++--  ..|++      ++.++.+|+-|||||+.+||||+|.||+.+++|.|||.      +..|+|+  +.+
T Consensus        78 ry~v~~~el~i--q~GiL------v~~r~viP~~RVQhVDt~~GPL~R~~~La~vti~TAss------~~~IeaL~~~eA  143 (161)
T COG3402          78 RYEVEEDELDI--QHGIL------VRTRTVIPYVRVQHVDTEQGPLLRRYGLATVTITTASS------DHTIEALDREEA  143 (161)
T ss_pred             eeecccceEEe--eccEE------EEEEEEeeEEEEEeeecccChHHHHhCcceEEEEeccc------cceecccCHHHH
Confidence            55555555555  49999      79999999999999999999999999999999999986      4555555  568


Q ss_pred             hhHHHHHHHHHh
Q 025023          166 SDFRKAVLTRLS  177 (259)
Q Consensus       166 ~~fRk~Il~~~~  177 (259)
                      +.+|+.+...+.
T Consensus       144 drlr~~l~~la~  155 (161)
T COG3402         144 DRLRERLANLAR  155 (161)
T ss_pred             HHHHHHHHHHHH
Confidence            888888766553



>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins Back     alignment and domain information
>COG3428 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG3428 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF14470 bPH_3: Bacterial PH domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 47/299 (15%), Positives = 87/299 (29%), Gaps = 77/299 (25%)

Query: 1   MGSRDEVVEIDSLEKGLLS--DNGIER------EDDDDVLYTA---SFQEKEDNFVQYQT 49
           + S+D V     L   LLS  +  +++        +   L +      ++       Y  
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 50  AQWVLYSLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIV------------ 97
            +  LY+   + A            V R      +R   L L P   V            
Sbjct: 115 QRDRLYNDNQVFA---------KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 98  --------YKVTRPVPFPCF----GVLKKEKHVLLPSVQDI--VIEQGYLQSLFGVYS-- 141
                   YKV   + F  F          + VL   +Q +   I+  +        +  
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIK 224

Query: 142 LRIENV--GVRR-------PPS----DDVQIQGVANPSDFRKAVL--TRLSNMTNEVFSR 186
           LRI ++   +RR               +VQ     N  +    +L  TR   +T+ + + 
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 187 EAS--AIEDVQNP------KRSLSSITSMSPSKPSRHDLSHSGDQVVLQKLEEVGSSVK 237
             +  +++           K  L       P      DL         ++L  +  S++
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-----DLPREVLTTNPRRLSIIAESIR 338


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00