Citrus Sinensis ID: 025023
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 259 | ||||||
| 255550357 | 295 | conserved hypothetical protein [Ricinus | 0.984 | 0.864 | 0.720 | 1e-101 | |
| 359484620 | 260 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.976 | 0.722 | 1e-98 | |
| 224068522 | 259 | predicted protein [Populus trichocarpa] | 0.965 | 0.965 | 0.719 | 2e-98 | |
| 356556412 | 246 | PREDICTED: uncharacterized protein LOC10 | 0.945 | 0.995 | 0.704 | 5e-98 | |
| 255637412 | 246 | unknown [Glycine max] | 0.945 | 0.995 | 0.692 | 6e-95 | |
| 147819579 | 417 | hypothetical protein VITISV_026889 [Viti | 0.915 | 0.568 | 0.723 | 7e-93 | |
| 449452604 | 250 | PREDICTED: uncharacterized protein LOC10 | 0.945 | 0.98 | 0.682 | 4e-91 | |
| 388522625 | 242 | unknown [Lotus japonicus] | 0.918 | 0.983 | 0.679 | 6e-91 | |
| 108862867 | 245 | expressed protein [Oryza sativa Japonica | 0.895 | 0.946 | 0.54 | 1e-69 | |
| 222617338 | 250 | hypothetical protein OsJ_36601 [Oryza sa | 0.895 | 0.928 | 0.529 | 6e-68 |
| >gi|255550357|ref|XP_002516229.1| conserved hypothetical protein [Ricinus communis] gi|223544715|gb|EEF46231.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/261 (72%), Positives = 218/261 (83%), Gaps = 6/261 (2%)
Query: 1 MGSRDEVVEIDSLEKGLLSDN--GIERE---DDDDVLYTASFQEKEDNFVQYQTAQWVLY 55
MG+ DEV EID+LE+GLLS++ G E+ DDD VLYTASF+E E+ FV+YQTAQWV+Y
Sbjct: 1 MGTVDEVAEIDNLERGLLSESCGGNEKSEGTDDDTVLYTASFREMEEKFVKYQTAQWVIY 60
Query: 56 SLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKE 115
SLLLILAWG+GLFMLLYLPVRRYILRKDI+SRKLFLTPNAIVYKVT+PV FPCFGVL KE
Sbjct: 61 SLLLILAWGMGLFMLLYLPVRRYILRKDIQSRKLFLTPNAIVYKVTKPVAFPCFGVLHKE 120
Query: 116 KHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRKAVLTR 175
KHVLLPSV DI+IEQGYLQSLFGVYS+RIEN GVRRPPSDDVQIQG+ANP F+KAVLT+
Sbjct: 121 KHVLLPSVADIIIEQGYLQSLFGVYSVRIENAGVRRPPSDDVQIQGIANPRAFKKAVLTQ 180
Query: 176 LSNMTNEVFSREASAIEDVQNPKRSLSSITSMSPSKPSRHDL-SHSGDQVVLQKLEEVGS 234
LS++ +E+ SR+ S IED+ + + SS MSP KP RHDL SGD V+LQKLEEVG+
Sbjct: 181 LSHIKSEIVSRQVSTIEDIPSLRLGHSSSPWMSPMKPQRHDLIPGSGDLVLLQKLEEVGN 240
Query: 235 SVKRVQALIEEQCGQTSDSLV 255
SVKRVQ LIEE+ S L+
Sbjct: 241 SVKRVQTLIEEKHHSQSSELM 261
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484620|ref|XP_002277580.2| PREDICTED: uncharacterized protein LOC100256095 [Vitis vinifera] gi|297738523|emb|CBI27768.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224068522|ref|XP_002326138.1| predicted protein [Populus trichocarpa] gi|222833331|gb|EEE71808.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356556412|ref|XP_003546520.1| PREDICTED: uncharacterized protein LOC100815806 [Glycine max] | Back alignment and taxonomy information |
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| >gi|255637412|gb|ACU19034.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|147819579|emb|CAN76563.1| hypothetical protein VITISV_026889 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449452604|ref|XP_004144049.1| PREDICTED: uncharacterized protein LOC101212805 [Cucumis sativus] gi|449530786|ref|XP_004172373.1| PREDICTED: uncharacterized LOC101212805 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|388522625|gb|AFK49374.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|108862867|gb|ABA99680.2| expressed protein [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|222617338|gb|EEE53470.1| hypothetical protein OsJ_36601 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
No hits with e-value below 0.001 by BLAST
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 259 | |||
| pfam03703 | 79 | pfam03703, DUF304, Bacterial PH domain | 0.002 |
| >gnl|CDD|202729 pfam03703, DUF304, Bacterial PH domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 110 GVLKKEKHVL-LPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDF 168
GVL ++ + L +Q + +EQ +Q L G+ ++ I+ G + + V +
Sbjct: 18 GVLGRKTTDIPLSRIQSVSLEQSPIQRLLGLGTIVIDTAGGSVEVK--LPLLSVPEAEEL 75
Query: 169 RKAV 172
R +
Sbjct: 76 RDYL 79
|
Domain found in uncharacterized family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices. Members of this family have a PH domain like structure. Length = 79 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 259 | |||
| COG3402 | 161 | Uncharacterized conserved protein [Function unknow | 99.31 | |
| PF03703 | 80 | bPH_2: Bacterial PH domain; InterPro: IPR005182 A | 99.24 | |
| COG3428 | 494 | Predicted membrane protein [Function unknown] | 98.64 | |
| COG3428 | 494 | Predicted membrane protein [Function unknown] | 98.01 | |
| PF14470 | 96 | bPH_3: Bacterial PH domain | 83.92 |
| >COG3402 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.6e-12 Score=107.99 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=62.1
Q ss_pred eeEeeccceEeeecCCccccccccceeeEEEeCCCeeeEEEeehhhhhhhcceeEEEEeccCCCCCCCCeeeecC--CCh
Q 025023 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGV--ANP 165 (259)
Q Consensus 88 kl~vt~~~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr~FGl~slrIETAG~s~~~~~di~I~Gv--~~p 165 (259)
.|.+.|+++-- ..|++ ++.++.+|+-|||||+.+||||+|.||+.+++|.|||. +..|+|+ +.+
T Consensus 78 ry~v~~~el~i--q~GiL------v~~r~viP~~RVQhVDt~~GPL~R~~~La~vti~TAss------~~~IeaL~~~eA 143 (161)
T COG3402 78 RYEVEEDELDI--QHGIL------VRTRTVIPYVRVQHVDTEQGPLLRRYGLATVTITTASS------DHTIEALDREEA 143 (161)
T ss_pred eeecccceEEe--eccEE------EEEEEEeeEEEEEeeecccChHHHHhCcceEEEEeccc------cceecccCHHHH
Confidence 55555555555 49999 79999999999999999999999999999999999986 4555555 568
Q ss_pred hhHHHHHHHHHh
Q 025023 166 SDFRKAVLTRLS 177 (259)
Q Consensus 166 ~~fRk~Il~~~~ 177 (259)
+.+|+.+...+.
T Consensus 144 drlr~~l~~la~ 155 (161)
T COG3402 144 DRLRERLANLAR 155 (161)
T ss_pred HHHHHHHHHHHH
Confidence 888888766553
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| >PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins | Back alignment and domain information |
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| >COG3428 Predicted membrane protein [Function unknown] | Back alignment and domain information |
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| >COG3428 Predicted membrane protein [Function unknown] | Back alignment and domain information |
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| >PF14470 bPH_3: Bacterial PH domain | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 259 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 1e-04
Identities = 47/299 (15%), Positives = 87/299 (29%), Gaps = 77/299 (25%)
Query: 1 MGSRDEVVEIDSLEKGLLS--DNGIER------EDDDDVLYTA---SFQEKEDNFVQYQT 49
+ S+D V L LLS + +++ + L + ++ Y
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 50 AQWVLYSLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIV------------ 97
+ LY+ + A V R +R L L P V
Sbjct: 115 QRDRLYNDNQVFA---------KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 98 --------YKVTRPVPFPCF----GVLKKEKHVLLPSVQDI--VIEQGYLQSLFGVYS-- 141
YKV + F F + VL +Q + I+ + +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIK 224
Query: 142 LRIENV--GVRR-------PPS----DDVQIQGVANPSDFRKAVL--TRLSNMTNEVFSR 186
LRI ++ +RR +VQ N + +L TR +T+ + +
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 187 EAS--AIEDVQNP------KRSLSSITSMSPSKPSRHDLSHSGDQVVLQKLEEVGSSVK 237
+ +++ K L P DL ++L + S++
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-----DLPREVLTTNPRRLSIIAESIR 338
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00