Citrus Sinensis ID: 025046

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTHSHAIKDQIAAVLRDPVTI
ccEEEEEHHEEcccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHcHHHHccccccccHHcccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccc
HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccc
MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKMQELVQMYFVQAkwssegyvptweeyypvglvsggYFMLATNSFLGMCEVANKEAFEWisknpkisrASSVISRLMNDIVSHQfeqkrghvttgvecyckqhgvseeEVVKVFTEEVENAWKDMNeeflrptafpvalierPFNIARVLEFLYkkgdcythshAIKDQIAAvlrdpvti
MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQhgvseeevVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTHSHAIKDQiaavlrdpvti
MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQHGvseeevvkvfteeveNAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTHSHAIKDQIAAVLRDPVTI
***TIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTHSHAIKDQIAAVL******
MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTHSHAIKDQIAAVLRDPVTI
MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTHSHAIKDQIAAVLRDPVTI
MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTHSHAIKDQIAAVLRDPVTI
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MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTHSHAIKDQIAAVLRDPVTI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query258 2.2.26 [Sep-21-2011]
Q6Q3H3557 (-)-germacrene D synthase yes no 1.0 0.463 0.548 3e-79
E3W207559 Sesquiterpene synthase OS N/A no 0.996 0.459 0.519 4e-75
B5A435559 Sesquiterpene synthase OS N/A no 1.0 0.461 0.505 9e-75
F6M8H7562 Probable sesquiterpene sy N/A no 1.0 0.459 0.505 2e-74
Q94JS8560 (E)-beta-farnesene syntha N/A no 0.996 0.458 0.536 2e-73
Q6Q3H2556 Valencene synthase OS=Vit no no 0.992 0.460 0.529 2e-73
F6M8H5562 Probable sesquiterpene sy N/A no 1.0 0.459 0.498 1e-72
F6M8H4559 Probable sesquiterpene sy N/A no 1.0 0.461 0.494 2e-72
E3W208562 Sesquiterpene synthase OS N/A no 1.0 0.459 0.494 2e-72
F6M8H6562 Probable sesquiterpene sy N/A no 1.0 0.459 0.494 2e-72
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  295 bits (754), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 142/259 (54%), Positives = 185/259 (71%), Gaps = 1/259 (0%)

Query: 1   MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEV 60
           +TK I M SIIDD +D YG  EEL+LF EAV+RWDI A+D LPEYM+V Y+ALL  Y+E+
Sbjct: 299 LTKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVYSEI 358

Query: 61  EQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLAT 120
           E+++AKEGRS  L Y KE M+  V+ Y+ +AKW     +PT EEY PV LV+  Y MLAT
Sbjct: 359 EEEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLAT 418

Query: 121 NSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQ 180
            SF+GM +   KE+F+WI   PKI RAS+++ RLM+D+V H+FEQKRGHV + VECY KQ
Sbjct: 419 TSFVGMGDAVTKESFDWIFSKPKIVRASAIVCRLMDDMVFHKFEQKRGHVASAVECYMKQ 478

Query: 181 HGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTH 240
           HG SE+E    F + V  AWKD+NEE L PTA P+ ++ R  N+ARV++ +YK  D YTH
Sbjct: 479 HGASEQETPNEFPQPVREAWKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNEDGYTH 538

Query: 241 SHAI-KDQIAAVLRDPVTI 258
             A+ KD + ++L DPV I
Sbjct: 539 FGAVLKDFVTSMLIDPVPI 557
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
9864189 555 terpene synthase [Citrus junos] 1.0 0.464 0.860 1e-129
261343328 548 terpene synthase 1 [Citrus sinensis] 0.992 0.467 0.599 6e-88
33316389 548 valencene synthase [Citrus sinensis] 0.992 0.467 0.599 8e-88
19880625 548 putative terpene synthase [Citrus x para 0.992 0.467 0.595 3e-87
147828675 557 hypothetical protein VITISV_013313 [Viti 1.0 0.463 0.552 3e-79
359493937 557 PREDICTED: (-)-germacrene D synthase [Vi 1.0 0.463 0.552 4e-79
147770872 545 hypothetical protein VITISV_010524 [Viti 0.992 0.469 0.548 1e-78
315134533 556 sesquiterpene synthase [Toona sinensis] 1.0 0.464 0.528 1e-78
147856860 557 hypothetical protein VITISV_030783 [Viti 1.0 0.463 0.548 2e-78
297740955252 unnamed protein product [Vitis vinifera] 0.968 0.992 0.553 4e-78
>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos] Back     alignment and taxonomy information
 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/258 (86%), Positives = 235/258 (91%)

Query: 1   MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEV 60
           MTKTIY ASIIDDTFDAYGFFEELKLF EAVQRWDIGAMDILPEYMKVLYKALLDT+NE+
Sbjct: 298 MTKTIYTASIIDDTFDAYGFFEELKLFAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 357

Query: 61  EQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLAT 120
           EQDLAKEGRSS L Y KEKMQELVQMYFVQAKW SEGYVPTW+EYYPVGLVS GYFMLAT
Sbjct: 358 EQDLAKEGRSSCLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 417

Query: 121 NSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQ 180
           NSFLGMC+VANKE+FEWIS+  +  +    I RL NDIVSHQFEQKRGH+ +GVECY KQ
Sbjct: 418 NSFLGMCDVANKESFEWISRTLRFQQRHQFICRLRNDIVSHQFEQKRGHIASGVECYIKQ 477

Query: 181 HGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTH 240
           +GVS EEVV VFTEEVENAWKDMNEEFL+PTAFPVALIERPFNIARV+EFL KKGD YTH
Sbjct: 478 YGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTH 537

Query: 241 SHAIKDQIAAVLRDPVTI 258
           SHAIKDQIAAVLRDPVTI
Sbjct: 538 SHAIKDQIAAVLRDPVTI 555

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis] Back     alignment and taxonomy information
>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis] Back     alignment and taxonomy information
>gi|19880625|gb|AAM00426.1|AF411120_1 putative terpene synthase [Citrus x paradisi] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147770872|emb|CAN72015.1| hypothetical protein VITISV_010524 [Vitis vinifera] Back     alignment and taxonomy information
>gi|315134533|dbj|BAJ46125.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740955|emb|CBI31267.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.992 0.457 0.490 1.3e-66
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.988 0.452 0.429 1.1e-57
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 1.0 0.456 0.428 1.7e-57
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 1.0 0.469 0.432 2.3e-55
UNIPROTKB|Q49SP6554 Q49SP6 "Germacrene D synthase 0.992 0.462 0.422 2.4e-53
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.980 0.455 0.424 4.9e-53
UNIPROTKB|B2KSJ6560 B2KSJ6 "Alpha-farnesene syntha 1.0 0.460 0.401 3.1e-51
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.992 0.448 0.406 2.8e-50
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.992 0.469 0.399 5.8e-50
TAIR|locus:2178657547 TPS21 "terpene synthase 21" [A 0.996 0.469 0.366 4.1e-49
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 126/257 (49%), Positives = 174/257 (67%)

Query:     3 KTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQ 62
             K   M S IDD +DAYG  +EL+LF +A+QRWD+G++D LPEYMK  YK++LD YNE+E+
Sbjct:   303 KVFTMISTIDDIYDAYGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYNEIEE 362

Query:    63 DLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNS 122
             ++  +G    + Y KE M++LV+ Y  +AKW  E YVPT+EEY PV LV+ GY  L T S
Sbjct:   363 EMDNQGSLFRMHYAKEVMKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFLTTIS 422

Query:   123 FLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQHG 182
             +LGM E+A+KEAF+W+  +P +  AS  + RLM+D+ SH+FEQ+RGHV +G+ECY KQ+G
Sbjct:   423 YLGMGEIASKEAFDWLFSHPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYMKQYG 482

Query:   183 XXXXXXXXXXXXXXXNAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTH-S 241
                             AWKD+NEE LRP   P  L+ R  N+ RV++ +YK  D YTH  
Sbjct:   483 VTEEEAHDEFRKQLVKAWKDINEECLRPYRVPKPLLMRILNLTRVIDVIYKNEDGYTHVK 542

Query:   242 HAIKDQIAAVLRDPVTI 258
              A+KD IA++L DP+ +
Sbjct:   543 KAMKDNIASLLIDPMIV 559
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP6 Q49SP6 "Germacrene D synthase 2" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ6 B2KSJ6 "Alpha-farnesene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
TAIR|locus:2178657 TPS21 "terpene synthase 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-119
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 6e-93
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 5e-80
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 1e-35
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 2e-18
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 4e-14
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  349 bits (898), Expect = e-119
 Identities = 133/257 (51%), Positives = 185/257 (71%), Gaps = 2/257 (0%)

Query: 1   MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEV 60
           + KTI + ++IDDT+D YG  EEL+LF EAV+RWDI A+D LPEYMK+++KALL+T NE+
Sbjct: 286 LAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEI 345

Query: 61  EQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLAT 120
           E++L KEG S  + Y KE  ++LV+ Y V+AKW+ EGYVPT+EEY    LVS G   L  
Sbjct: 346 EEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLL 405

Query: 121 NSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQ 180
            SFLGM ++  +EAFEW+   PK+ RASS I RLMNDI +++ E KRG V + +ECY K+
Sbjct: 406 TSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKE 465

Query: 181 HGVSEEEVVKVFTEEVENAWKDMNEEFLRP-TAFPVALIERPFNIARVLEFLYKKGDCYT 239
           +GVSEEE  +   + +E+AWK++NEEFL+P +  P  + +R  N+ARV++  YK+GD +T
Sbjct: 466 YGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFT 525

Query: 240 HSHA-IKDQIAAVLRDP 255
           H    IKD I ++L +P
Sbjct: 526 HPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 258
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PLN0215096 terpene synthase/cyclase family protein 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.85
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 98.21
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.97
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 94.54
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 90.3
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 90.24
PLN02857416 octaprenyl-diphosphate synthase 88.84
PLN02890422 geranyl diphosphate synthase 88.34
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 86.74
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 86.56
TIGR02748319 GerC3_HepT heptaprenyl diphosphate synthase compon 85.91
PF10776330 DUF2600: Protein of unknown function (DUF2600); In 85.21
COG3707194 AmiR Response regulator with putative antiterminat 81.35
COG0142322 IspA Geranylgeranyl pyrophosphate synthase [Coenzy 80.51
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=4.1e-69  Score=516.61  Aligned_cols=255  Identities=52%  Similarity=0.895  Sum_probs=250.1

Q ss_pred             CceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHH
Q 025046            1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKM   80 (258)
Q Consensus         1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~   80 (258)
                      +||+++|+|++||+||.|||++||+.||+||+|||.++++++|+|||+||.++++++++++.++.++++++++.|++++|
T Consensus       286 ~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~  365 (542)
T cd00684         286 LAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAW  365 (542)
T ss_pred             HHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999989999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046           81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVS  160 (258)
Q Consensus        81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S  160 (258)
                      ++++++|++||+|+++|++||++|||++|.+|+|++++++++++++|+.+|+++++|+..+|+|+++++.++||+|||.|
T Consensus       366 ~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S  445 (542)
T cd00684         366 KDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIAT  445 (542)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhh
Confidence            99999999999999999999999999999999999999999999999999999999987779999999999999999999


Q ss_pred             hhhhhhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCcHHHHHHHHHhhhhhhhhhccCCCCC
Q 025046          161 HQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRP-TAFPVALIERPFNIARVLEFLYKKGDCYT  239 (258)
Q Consensus       161 ~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~l~~-~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t  239 (258)
                      |++|+++|+++|+|.|||+|+|+|+|||+++++++++++||++|++++++ +++|++|+++++|++|+++++|+++||||
T Consensus       446 ~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t  525 (542)
T cd00684         446 YEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFT  525 (542)
T ss_pred             hHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            99999999999999999999999999999999999999999999999997 78999999999999999999999999999


Q ss_pred             Cc-HHHHHHHHHhcccc
Q 025046          240 HS-HAIKDQIAAVLRDP  255 (258)
Q Consensus       240 ~~-~~~k~~i~~l~~~p  255 (258)
                      .| +.+|++|++||++|
T Consensus       526 ~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         526 HPEGEIKDHITSLLFEP  542 (542)
T ss_pred             CccHHHHHHHHHHhcCC
Confidence            99 78999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>PLN02857 octaprenyl-diphosphate synthase Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II Back     alignment and domain information
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins Back     alignment and domain information
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms] Back     alignment and domain information
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 8e-62
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-52
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 2e-52
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-52
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-52
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-52
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 3e-52
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 3e-52
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 6e-52
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 7e-52
2j5c_A569 Rational Conversion Of Substrate And Product Specif 7e-32
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 9e-32
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 2e-31
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 3e-30
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 5e-30
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-26
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 3e-22
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  233 bits (594), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 108/259 (41%), Positives = 165/259 (63%), Gaps = 1/259 (0%)
Query: 1   MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEV 60
           +TK I MASI+DDT+D+Y  +EEL  +  A++RWDI  +D +PEYMK  YKALLD Y E+
Sbjct: 296 LTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEM 355
Query: 61  EQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLAT 120
            Q +A+ GR   + Y K  M  L Q Y V+AKW+ + Y P++EE+    L + GY MLA 
Sbjct: 356 VQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI 415
Query: 121 NSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQ 180
            SF+GM ++   E F+W + +PKI +AS++I R M+D+  H+F+ +R    + +ECY ++
Sbjct: 416 TSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEE 475
Query: 181 HGXXXXXXXXXXXXXXXNAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTH 240
           +G               +AWKD+N+EFL+PT  P  ++ R  N+ARV++ LY++GD YT+
Sbjct: 476 YGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTY 535
Query: 241 -SHAIKDQIAAVLRDPVTI 258
              A K  I ++L +P+ +
Sbjct: 536 VGKAAKGGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 9e-89
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 3e-85
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 2e-84
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 2e-84
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 3e-84
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 3e-83
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 3e-82
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 3e-81
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-80
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 5e-32
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 1e-27
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 2e-25
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 2e-14
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 3e-10
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  272 bits (696), Expect = 9e-89
 Identities = 114/259 (44%), Positives = 174/259 (67%), Gaps = 1/259 (0%)

Query: 1   MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEV 60
           +TK I MASI+DDT+D+Y  +EEL  +  A++RWDI  +D +PEYMK  YKALLD Y E+
Sbjct: 296 LTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEM 355

Query: 61  EQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLAT 120
            Q +A+ GR   + Y K  M  L Q Y V+AKW+ + Y P++EE+    L + GY MLA 
Sbjct: 356 VQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI 415

Query: 121 NSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCKQ 180
            SF+GM ++   E F+W + +PKI +AS++I R M+D+  H+F+ +R    + +ECY ++
Sbjct: 416 TSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEE 475

Query: 181 HGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTH 240
           +GV+ +E   VF + VE+AWKD+N+EFL+PT  P  ++ R  N+ARV++ LY++GD YT+
Sbjct: 476 YGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTY 535

Query: 241 S-HAIKDQIAAVLRDPVTI 258
              A K  I ++L +P+ +
Sbjct: 536 VGKAAKGGITSLLIEPIAL 554
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.75
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 91.85
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 90.48
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 88.49
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 86.75
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 85.98
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 85.96
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 84.14
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 83.38
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 82.97
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 81.72
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 81.25
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 81.17
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=6.2e-81  Score=593.16  Aligned_cols=258  Identities=44%  Similarity=0.844  Sum_probs=242.5

Q ss_pred             CceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHH
Q 025046            1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKM   80 (258)
Q Consensus         1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~   80 (258)
                      +||+++++|++||+||+|||+|||++||+||+|||++++++||+|||+||.+++++++|++.++.++||+++++|++++|
T Consensus       296 ~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w  375 (554)
T 3g4d_A          296 LTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAM  375 (554)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999988889999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046           81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVS  160 (258)
Q Consensus        81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S  160 (258)
                      +++++||++||+|+++||+||+||||++|.+|+|++++++++++++|+.+|+++++|++++|+++++++.++||+|||+|
T Consensus       376 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S  455 (554)
T 3g4d_A          376 IRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAE  455 (554)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhhhhhccCCCCCC
Q 025046          161 HQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYTH  240 (258)
Q Consensus       161 ~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~  240 (258)
                      |++|+++|+++|+|+|||+|||+|+|||+++++++++++||+||+++++++++|++|+++++|++|+++++|+++||||.
T Consensus       456 ~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~  535 (554)
T 3g4d_A          456 HKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTY  535 (554)
T ss_dssp             HCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----C
T ss_pred             hhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             c-HHHHHHHHHhcccccCC
Q 025046          241 S-HAIKDQIAAVLRDPVTI  258 (258)
Q Consensus       241 ~-~~~k~~i~~l~~~p~~~  258 (258)
                      | ..||++|++||++|||+
T Consensus       536 ~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          536 VGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             CCHHHHHHHHHHHTCCCCC
T ss_pred             ccHHHHHHHHHHhcCCCCC
Confidence            9 78999999999999985
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 258
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-100
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-97
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 7e-41
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 2e-33
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  292 bits (750), Expect = e-100
 Identities = 77/258 (29%), Positives = 132/258 (51%), Gaps = 2/258 (0%)

Query: 1   MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEV 60
               I +A++IDD +D YG  +EL+LF +  +RWD  ++  LP YM++ Y  + +  ++ 
Sbjct: 70  AATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDA 129

Query: 61  EQDLAKEGRSSYLRYDKEKMQELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLAT 120
             D+ KE     L+Y ++ + +LV+ YF +AKW   GY P+ +EY  +  +S     + +
Sbjct: 130 AYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIIS 189

Query: 121 NSFLGMCE-VANKEAFEWISKNPKISRASSVISRLMNDIVSHQFEQKRGHVTTGVECYCK 179
            ++        +    + + +   I   + +I RL +D+ +  FE  RG V   ++CY K
Sbjct: 190 PTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMK 249

Query: 180 QHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKGDCYT 239
           +   SEEE V+     +  AWKDMN        FP  ++    NI RV +F+Y  GD + 
Sbjct: 250 ETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFG 309

Query: 240 HSHA-IKDQIAAVLRDPV 256
             H+   + IA +L +P 
Sbjct: 310 VQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.96
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.54
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 82.5
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=7.3e-79  Score=547.33  Aligned_cols=257  Identities=44%  Similarity=0.795  Sum_probs=243.0

Q ss_pred             CceeeeehheecccccCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhHHHH
Q 025046            1 MTKTIYMASIIDDTFDAYGFFEELKLFVEAVQRWDIGAMDILPEYMKVLYKALLDTYNEVEQDLAKEGRSSYLRYDKEKM   80 (258)
Q Consensus         1 ~tK~~~~~~~~DD~~D~~gt~~El~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~   80 (258)
                      +||++++++++||+||.|||+|||+.||+||+|||.+++++||+|||++|++++++++|++.++.+.||+++++|++++|
T Consensus        70 ~aK~~~l~ti~DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w  149 (328)
T d5easa2          70 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM  149 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhHHHHHHhhcCCcCChhHHhhhccchHHHHHHHhHHHHhcCccc
Q 025046           81 QELVQMYFVQAKWSSEGYVPTWEEYYPVGLVSGGYFMLATNSFLGMCEVANKEAFEWISKNPKISRASSVISRLMNDIVS  160 (258)
Q Consensus        81 ~~~~~~~~~Ea~w~~~~~~Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S  160 (258)
                      ++++++|++||+|+++||+||+||||++|.+|+|+++++..+++++|. ++++.++|+.++|+++++++.++||+|||+|
T Consensus       150 ~~~~~~~l~EA~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~-~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s  228 (328)
T d5easa2         150 KEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTAT  228 (328)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCC-CcHHHHHhcccchHHHHHHHHHHHHHhhhHH
Confidence            999999999999999999999999999999999999999999999997 5778899999999999999999999999999


Q ss_pred             hhhhhhcCcccchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhhhhhccC-CCCC
Q 025046          161 HQFEQKRGHVTTGVECYCKQHGVSEEEVVKVFTEEVENAWKDMNEEFLRPTAFPVALIERPFNIARVLEFLYKKG-DCYT  239 (258)
Q Consensus       161 ~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~-D~~t  239 (258)
                      +++|+++|+++|+|+|||+|||+|+|||+++++++|+++||+||+++++++++|.+++++++|+||+++++|+++ ||||
T Consensus       229 ~~~E~~rG~~~s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt  308 (328)
T d5easa2         229 YEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYT  308 (328)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC-------
T ss_pred             HHHHhccCCCCeeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987 9999


Q ss_pred             Cc-HHHHHHHHHhcccccCC
Q 025046          240 HS-HAIKDQIAAVLRDPVTI  258 (258)
Q Consensus       240 ~~-~~~k~~i~~l~~~p~~~  258 (258)
                      +| +.+|++|++||++|||+
T Consensus       309 ~~~~~~k~~i~~ll~epi~~  328 (328)
T d5easa2         309 HPEKVLKPHIINLLVDSIKI  328 (328)
T ss_dssp             ----CCHHHHHHHHTCCCCC
T ss_pred             CchHHHHHHHHHHhccCCcC
Confidence            99 57999999999999996
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure