Citrus Sinensis ID: 025047

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MLYYLFCEPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSSNKGA
cccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccc
cEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccHHccccc
mlyylfcepgmqgaheesksvtkaPAMKAIKKRMEKDVDEVGKISRFIKSKIEELdrenltsrqkpgcgkgtgvdrsrtattLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTvtgkradeETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIkpwssnkga
MLYYLFCepgmqgaheesksvtkapAMKAIKKrmekdvdevgkiSRFIKskieeldrenltsrqkpgcgkgtgvdrsrtattlglkkkfkdkmgefQVLRenihqeyrevverrvytvtgkradeetidqLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKpwssnkga
MLYYLFCEPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQeyrevverrvytvtGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCiaiiilliivaiivvaviKPWSSNKGA
**YYLFC*********************************************************************************FKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIE******IFQKAI******QIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNI***************************SRKWMCIAIIILLIIVAIIVVAVIKPW******
*LYYLF*E*********************************GKISRFIKS******************************TTLGLKKKFKDKMGEFQV************************************************************EIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIK*WS*****
MLYYLFCEPGM*************PAMKAIKKRMEKDVDEVGKISRFIKSKIEELDR******************RSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQV***********************SRKWMCIAIIILLIIVAIIVVAVIKPWSSNKGA
MLYYLFCEPGMQGAHEE****TKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSR******KGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSS****
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MLYYLFCEPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAExxxxxxxxxxxxxxxxxxxxxFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSSNKGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query258 2.2.26 [Sep-21-2011]
Q9SRV7306 Putative syntaxin-131 OS= yes no 0.961 0.810 0.806 1e-110
Q8VZU2304 Syntaxin-132 OS=Arabidops no no 0.953 0.809 0.862 1e-106
O64791303 Syntaxin-124 OS=Arabidops no no 0.930 0.792 0.491 2e-66
Q9ZQZ8305 Syntaxin-123 OS=Arabidops no no 0.864 0.731 0.551 2e-66
Q9SXB0298 Syntaxin-125 OS=Arabidops no no 0.864 0.748 0.533 2e-64
Q9ZSD4346 Syntaxin-121 OS=Arabidops no no 0.949 0.708 0.530 4e-64
Q9SVC2341 Syntaxin-122 OS=Arabidops no no 0.953 0.721 0.520 5e-61
Q42374310 Syntaxin-related protein no no 0.825 0.687 0.454 2e-49
Q9ZPV9305 Syntaxin-112 OS=Arabidops no no 0.899 0.760 0.330 5e-35
P32851288 Syntaxin-1A OS=Rattus nor no no 0.771 0.690 0.288 4e-18
>sp|Q9SRV7|SY131_ARATH Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=3 SV=1 Back     alignment and function desciption
 Score =  399 bits (1025), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/248 (80%), Positives = 229/248 (92%)

Query: 11  MQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGK 70
           +QGAHEE+K+VTKAPAMK+IK+RME+DVDEVG+ISRFIK KIEELDRENL +R KPGCGK
Sbjct: 59  LQGAHEETKAVTKAPAMKSIKQRMERDVDEVGRISRFIKGKIEELDRENLENRTKPGCGK 118

Query: 71  GTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQ 130
           GTGVDR+RTATT+ +KKKFKDK+ EFQ LR+NI QEYREVVERRV+TVTG+RADEE ID+
Sbjct: 119 GTGVDRTRTATTIAVKKKFKDKISEFQTLRQNIQQEYREVVERRVFTVTGQRADEEAIDR 178

Query: 131 LIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDA 190
           LIETGDSEQIFQKAI+EQGRGQIMDTLAEIQERHDAVRDLE+KLL+LQQ+FLDMAVLVDA
Sbjct: 179 LIETGDSEQIFQKAIREQGRGQIMDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDA 238

Query: 191 QGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIK 250
           QG+MLDNIE+ VSSAVDHVQSGN  L KA K QK+SRKWMCIAI+ILLII+ I V++V+K
Sbjct: 239 QGEMLDNIENMVSSAVDHVQSGNNQLTKAVKSQKSSRKWMCIAILILLIIIIITVISVLK 298

Query: 251 PWSSNKGA 258
           PW+   GA
Sbjct: 299 PWTQKNGA 306
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZU2|SY132_ARATH Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1 Back     alignment and function description
>sp|O64791|SY124_ARATH Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQZ8|SY123_ARATH Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1 Back     alignment and function description
>sp|Q9SXB0|SY125_ARATH Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSD4|SY121_ARATH Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVC2|SY122_ARATH Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1 Back     alignment and function description
>sp|Q42374|SY111_ARATH Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1 Back     alignment and function description
>sp|Q9ZPV9|SY112_ARATH Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2 Back     alignment and function description
>sp|P32851|STX1A_RAT Syntaxin-1A OS=Rattus norvegicus GN=Stx1a PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
224146010304 predicted protein [Populus trichocarpa] 0.957 0.812 0.886 1e-115
255569518304 syntaxin, putative [Ricinus communis] gi 0.961 0.815 0.862 1e-112
15228637306 syntaxin 1B/2/3 [Arabidopsis thaliana] g 0.961 0.810 0.806 1e-109
297828858306 SYP131 [Arabidopsis lyrata subsp. lyrata 0.961 0.810 0.806 1e-109
225439283307 PREDICTED: putative syntaxin-131 [Vitis 0.949 0.798 0.889 1e-107
388519397305 unknown [Medicago truncatula] 0.961 0.813 0.806 1e-107
18415701304 syntaxin-132 [Arabidopsis thaliana] gi|2 0.953 0.809 0.862 1e-104
334187506315 syntaxin-132 [Arabidopsis thaliana] gi|3 0.949 0.777 0.861 1e-104
449446742308 PREDICTED: putative syntaxin-131-like [C 0.961 0.805 0.834 1e-104
297806847304 SYP132 [Arabidopsis lyrata subsp. lyrata 0.953 0.809 0.850 1e-103
>gi|224146010|ref|XP_002325846.1| predicted protein [Populus trichocarpa] gi|222862721|gb|EEF00228.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/247 (88%), Positives = 235/247 (95%)

Query: 12  QGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKG 71
           Q AHEESK+VTKAPAMK IK+RMEKDVDEVGKI+R IKSK+EELD+ENL++RQKPGCGKG
Sbjct: 58  QDAHEESKAVTKAPAMKGIKQRMEKDVDEVGKIARSIKSKLEELDKENLSNRQKPGCGKG 117

Query: 72  TGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQL 131
           TGVDRSRT+TT+ LKKK KDKM EFQ LRENIHQEYREVVERRV+TVTG RADEETID L
Sbjct: 118 TGVDRSRTSTTIALKKKLKDKMAEFQTLRENIHQEYREVVERRVFTVTGTRADEETIDTL 177

Query: 132 IETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQ 191
           IETGDSEQIFQKAIQEQGRGQI DTLAEIQERHDAVRDLERKLL+LQQIFLDMAVLVDAQ
Sbjct: 178 IETGDSEQIFQKAIQEQGRGQITDTLAEIQERHDAVRDLERKLLDLQQIFLDMAVLVDAQ 237

Query: 192 GDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKP 251
           GDMLDNIESQVS+AVDHVQSGN ALQKAKKLQ+NSRKWMCIAIIILLIIVAIIVV V+KP
Sbjct: 238 GDMLDNIESQVSNAVDHVQSGNVALQKAKKLQRNSRKWMCIAIIILLIIVAIIVVTVLKP 297

Query: 252 WSSNKGA 258
           W++NKGA
Sbjct: 298 WNNNKGA 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255569518|ref|XP_002525726.1| syntaxin, putative [Ricinus communis] gi|223535026|gb|EEF36709.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15228637|ref|NP_187030.1| syntaxin 1B/2/3 [Arabidopsis thaliana] gi|28380139|sp|Q9SRV7.1|SY131_ARATH RecName: Full=Putative syntaxin-131; Short=AtSYP131 gi|6006872|gb|AAF00648.1|AC009540_25 s-syntaxin-like protein [Arabidopsis thaliana] gi|332640474|gb|AEE73995.1| syntaxin 1B/2/3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297828858|ref|XP_002882311.1| SYP131 [Arabidopsis lyrata subsp. lyrata] gi|297328151|gb|EFH58570.1| SYP131 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225439283|ref|XP_002266162.1| PREDICTED: putative syntaxin-131 [Vitis vinifera] gi|296089302|emb|CBI39074.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388519397|gb|AFK47760.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|18415701|ref|NP_568187.1| syntaxin-132 [Arabidopsis thaliana] gi|28380129|sp|Q8VZU2.1|SY132_ARATH RecName: Full=Syntaxin-132; Short=AtSYP132 gi|17380724|gb|AAL36192.1| putative syntaxin [Arabidopsis thaliana] gi|21436145|gb|AAM51319.1| putative syntaxin [Arabidopsis thaliana] gi|332003859|gb|AED91242.1| syntaxin-132 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334187506|ref|NP_001190256.1| syntaxin-132 [Arabidopsis thaliana] gi|332003861|gb|AED91244.1| syntaxin-132 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449446742|ref|XP_004141130.1| PREDICTED: putative syntaxin-131-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297806847|ref|XP_002871307.1| SYP132 [Arabidopsis lyrata subsp. lyrata] gi|297317144|gb|EFH47566.1| SYP132 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
TAIR|locus:2079449306 SYP131 "syntaxin of plants 131 0.961 0.810 0.709 8.3e-90
TAIR|locus:2125487305 SYP123 "syntaxin of plants 123 0.856 0.724 0.502 7e-54
TAIR|locus:2081476346 SYP121 "syntaxin of plants 121 0.957 0.713 0.445 2.4e-53
TAIR|locus:2202049298 SYP125 "syntaxin of plants 125 0.856 0.741 0.493 4.9e-53
TAIR|locus:2197749303 SYP124 "syntaxin of plants 124 0.856 0.729 0.479 9.2e-52
TAIR|locus:2079894341 SYP122 "syntaxin of plants 122 0.957 0.724 0.449 8.3e-51
TAIR|locus:2025620310 SYP111 "syntaxin of plants 111 0.825 0.687 0.408 2.8e-41
TAIR|locus:2062151305 SYP112 "syntaxin of plants 112 0.825 0.698 0.322 9.1e-29
DICTYBASE|DDB_G0270556334 syn1B "putative syntaxin 1" [D 0.779 0.601 0.326 5.7e-20
FB|FBgn0013343291 Syx1A "Syntaxin 1A" [Drosophil 0.833 0.738 0.247 7.5e-18
TAIR|locus:2079449 SYP131 "syntaxin of plants 131" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 176/248 (70%), Positives = 199/248 (80%)

Query:    11 MQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGK 70
             +QGAHEE+K+VTKAPAMK+IK+RME+DVDEVG+ISRFIK KIEELDRENL +R KPGCGK
Sbjct:    59 LQGAHEETKAVTKAPAMKSIKQRMERDVDEVGRISRFIKGKIEELDRENLENRTKPGCGK 118

Query:    71 GTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQ 130
             GTGVDR+RTATT+ +KKKFKDK+ EFQ LR+NI Q              G+RADEE ID+
Sbjct:   119 GTGVDRTRTATTIAVKKKFKDKISEFQTLRQNIQQEYREVVERRVFTVTGQRADEEAIDR 178

Query:   131 LIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDA 190
             LIETGDSEQIFQKAI+EQGRGQIMDTLAEIQERHDAVRDLE+KLL+LQQ+FLDMAVLVDA
Sbjct:   179 LIETGDSEQIFQKAIREQGRGQIMDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDA 238

Query:   191 QGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCXXXXXXXXXXXXXXXXXXK 250
             QG+MLDNIE+ VSSAVDHVQSGN  L KA K QK+SRKWMC                  K
Sbjct:   239 QGEMLDNIENMVSSAVDHVQSGNNQLTKAVKSQKSSRKWMCIAILILLIIIIITVISVLK 298

Query:   251 PWSSNKGA 258
             PW+   GA
Sbjct:   299 PWTQKNGA 306
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016020 "membrane" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
TAIR|locus:2125487 SYP123 "syntaxin of plants 123" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081476 SYP121 "syntaxin of plants 121" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202049 SYP125 "syntaxin of plants 125" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197749 SYP124 "syntaxin of plants 124" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079894 SYP122 "syntaxin of plants 122" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025620 SYP111 "syntaxin of plants 111" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062151 SYP112 "syntaxin of plants 112" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270556 syn1B "putative syntaxin 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0013343 Syx1A "Syntaxin 1A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SRV7SY131_ARATHNo assigned EC number0.80640.96120.8104yesno
Q8VZU2SY132_ARATHNo assigned EC number0.86230.95340.8092nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
cd00179151 cd00179, SynN, Syntaxin N-terminus domain; syntaxi 1e-27
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 1e-19
pfam0573962 pfam05739, SNARE, SNARE domain 8e-15
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 1e-14
smart00503117 smart00503, SynN, Syntaxin N-terminal domain 1e-13
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 2e-12
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 3e-12
pfam00804103 pfam00804, Syntaxin, Syntaxin 7e-07
>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information 
 Score =  103 bits (258), Expect = 1e-27
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 7/133 (5%)

Query: 12  QGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKG 71
           Q  H +  +   A     +K+ +E  V E+ K+++ IK K++EL+  N  +    G    
Sbjct: 26  QKLHSQLLTAPDA--DPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSS-- 81

Query: 72  TGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQL 131
             VDR R     GL KKF + M EF   +    + Y+E ++R++    G+  DEE  D L
Sbjct: 82  --VDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGEATDEELEDML 139

Query: 132 IETGDSEQIFQKA 144
                SE    + 
Sbjct: 140 ESGN-SEIFTSQI 151

Length = 151
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 258
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 100.0
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 100.0
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 99.97
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.89
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.75
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.64
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.51
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.36
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.24
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 99.07
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 98.99
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 98.66
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 98.57
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 98.56
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 97.7
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.59
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 97.07
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 97.01
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 96.92
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 96.4
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 95.88
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 95.67
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 95.45
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 94.58
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 94.19
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 94.17
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 92.37
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 92.06
PF1071785 ODV-E18: Occlusion-derived virus envelope protein 90.93
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 87.51
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 84.15
PF0450582 Dispanin: Interferon-induced transmembrane protein 80.33
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-49  Score=352.71  Aligned_cols=243  Identities=42%  Similarity=0.650  Sum_probs=218.2

Q ss_pred             HHhHHHHHHHH-----hhhcChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHH
Q 025047            8 EPGMQGAHEES-----KSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATT   82 (258)
Q Consensus         8 ~~~l~~~~~~~-----~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~   82 (258)
                      +++|...++++     +.+++|..+++++++|+.+++++.+.++.|+.+|+.+++.+...+..+   +.++..|+|++++
T Consensus        49 i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~---~~~~~~r~rrtq~  125 (297)
T KOG0810|consen   49 IEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQN---RSSAGLRTRRTQT  125 (297)
T ss_pred             HHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CCCccchhHHHHH
Confidence            34444444444     445556789999999999999999999999999999999987654333   3356789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHHHhCCCchHHHHHHHHHcchhhhhhhHHHHHH
Q 025047           83 LGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQE  162 (258)
Q Consensus        83 ~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~t~eeie~~~~~~~~~~~~q~~l~~~~~~q~~~~l~~i~~  162 (258)
                      ..++++|.++|.+|+.+|.+|+++|++++.|+|..+.+..++|++++.++++|+++.|++.++.  ++++.++++.++++
T Consensus       126 ~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~--~~~~~~~~l~Eiq~  203 (297)
T KOG0810|consen  126 SALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ--DRGQAKQTLAEIQE  203 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH--HhhhhHHHHHHHHH
Confidence            9999999999999999999999999999998776665559999999999999999999999887  55677899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 025047          163 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVA  242 (258)
Q Consensus       163 R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~~~~~~~iv~~  242 (258)
                      ||.+|.+||++|.|||+||.|||+||+.||+|||+||+||.+|.+||++|..++.+|.+||+++|||+||++++++|+++
T Consensus       204 Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~  283 (297)
T KOG0810|consen  204 RHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIV  283 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccccCC
Q 025047          243 IIVVAVIKPWSSN  255 (258)
Q Consensus       243 ii~~~i~~~~~~~  255 (258)
                      |+++++++||...
T Consensus       284 v~v~~i~~~~~~~  296 (297)
T KOG0810|consen  284 VLVVVIVVPLVLF  296 (297)
T ss_pred             HHhhhhccccccC
Confidence            9999999999654

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
3c98_B279 Revised Structure Of The Munc18a-Syntaxin1 Complex 8e-14
1l4a_B88 X-Ray Structure Of The Neuronal ComplexinSNARE COMP 8e-12
1sfc_B83 Neuronal Synaptic Fusion Complex Length = 83 2e-11
1jth_B77 Crystal Structure And Biophysical Properties Of A C 4e-11
3hd7_B109 Helical Extension Of The Neuronal Snare Complex Int 4e-11
1hvv_A75 Self-Association Of The H3 Region Of Syntaxin 1a: I 4e-11
1urq_B75 Crystal Structure Of Neuronal Q-Snares In Complex W 3e-10
1n7s_B68 High Resolution Structure Of A Truncated Neuronal S 1e-09
2xhe_B279 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 2e-09
2nps_B71 Crystal Structure Of The Early Endosomal Snare Comp 3e-09
3rk2_B65 Truncated Snare Complex Length = 65 8e-09
1kil_B62 Three-Dimensional Structure Of The ComplexinSNARE C 8e-08
1gl2_B65 Crystal Structure Of An Endosomal Snare Core Comple 3e-07
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 279 Back     alignment and structure 
Iteration: 1

 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 100/197 (50%), Gaps = 18/197 (9%)
Query: 38  VDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQ 97
           + ++ K +  ++SK++ +++   +  Q+ G  + +   R R      L +KF + M E+ 
Sbjct: 91  MSDIKKTANKVRSKLKSIEQ---SIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYN 147
Query: 98  VLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDT- 156
             + + ++              G+    E ++ ++E+G+   IF         G IMD+ 
Sbjct: 148 ATQSD-YRERCKGRIQRQLEITGRTTTSEELEDMLESGNP-AIF-------ASGIIMDSS 198
Query: 157 -----LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 211
                L+EI+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  AVD+V+ 
Sbjct: 199 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVER 258
Query: 212 GNTALQKAKKLQKNSRK 228
             +  +KA K Q  +R+
Sbjct: 259 AVSDTKKAVKYQSKARR 275
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 88 Back     alignment and structure
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex Length = 83 Back     alignment and structure
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex Between The N-Terminal Region Of Snap25 And The Snare Region Of Syntaxin 1a Length = 77 Back     alignment and structure
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 109 Back     alignment and structure
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a: Implications For Snare Complex Assembly Length = 75 Back     alignment and structure
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With R-Snare Motif Of Tomosyn Length = 75 Back     alignment and structure
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 68 Back     alignment and structure
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 279 Back     alignment and structure
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex Length = 71 Back     alignment and structure
>pdb|3RK2|B Chain B, Truncated Snare Complex Length = 65 Back     alignment and structure
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 62 Back     alignment and structure
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex Length = 65 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 7e-42
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 5e-39
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 5e-34
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 1e-30
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 8e-27
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 2e-24
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 5e-23
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 8e-23
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 9e-22
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 4e-21
1s94_A180 S-syntaxin; three helix bundle, structural plastic 3e-16
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
 Score =  143 bits (361), Expect = 7e-42
 Identities = 53/215 (24%), Positives = 110/215 (51%), Gaps = 6/215 (2%)

Query: 18  SKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRS 77
           S  +      +  K+ +E+ + ++ K +  ++SK++ +++      Q+ G  + +   R 
Sbjct: 59  SAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSI---EQEEGLNRSSADLRI 115

Query: 78  RTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDS 137
           R      L +KF + M E+   + +  +  +  ++R+   +TG+    E ++ ++E+G+ 
Sbjct: 116 RKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQ-LEITGRTTTSEELEDMLESGNP 174

Query: 138 EQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDN 197
                  I +    +    L+EI+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D 
Sbjct: 175 AIFASGIIMDSSISK--QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDR 232

Query: 198 IESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCI 232
           IE  V  AVD+V+   +  +KA K Q  +R+   +
Sbjct: 233 IEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 267
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Length = 180 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Length = 127 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 100.0
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 100.0
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.96
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.95
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.92
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.88
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.88
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.86
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.84
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.82
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.8
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.7
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.44
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 98.63
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 97.56
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.35
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 97.24
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 97.13
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 97.03
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 96.89
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 96.87
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 96.5
3b5n_D64 Protein transport protein SEC9; snare complex, syn 96.43
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 95.0
3b5n_C70 Protein transport protein SEC9; snare complex, syn 93.73
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 93.42
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 92.73
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 89.44
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 83.57
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
Probab=100.00  E-value=3e-40  Score=291.80  Aligned_cols=219  Identities=25%  Similarity=0.411  Sum_probs=169.3

Q ss_pred             HHhHHHHHHHHhhhcC-----hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHH
Q 025047            8 EPGMQGAHEESKSVTK-----APAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATT   82 (258)
Q Consensus         8 ~~~l~~~~~~~~~~~~-----~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~   82 (258)
                      +.+|..++++++.+++     |..++.++.+|+.++.+++++++.|+..|+.|+......   +++.+++++.|+|++|+
T Consensus        44 I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~---~~~~~~~~e~Rirk~q~  120 (267)
T 1dn1_B           44 IDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE---EGLNRSSADLRIRKTQH  120 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccCCCCHHHHHHHHHH
Confidence            4555555555555554     334568999999999999999999999999999875421   12234467789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHHHhCCCchHHHHHHHHHcchhhhhhhHHHHHH
Q 025047           83 LGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQE  162 (258)
Q Consensus        83 ~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~t~eeie~~~~~~~~~~~~q~~l~~~~~~q~~~~l~~i~~  162 (258)
                      .+|+++|+++|.+|+.+|..|.++++.++.| ++.|.||++|++++++++++|++..|.+..+..  ..+++.++.++++
T Consensus       121 ~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~R-q~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~--~~~~~~~l~~i~~  197 (267)
T 1dn1_B          121 STLSRKFVEVMSEYNATQSDYRERCKGRIQR-QLEITGRTTTSEELEDMLESGNPAIFASGIIMD--SSISKQALSEIET  197 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCCCHHHHHHHHHTCSSCTTTTTCCCC--SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhhccCCCCCHHHHHHHHhCCcHHHHHHHHHHh--hHHHHHHHHHHHH
Confidence            9999999999999999999999999999986 567889999999999999998876554432322  2356778999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 025047          163 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCI  232 (258)
Q Consensus       163 R~~~i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~kA~~~q~~~rk~~~~  232 (258)
                      ||++|.+||++|.||++||.||+.||++||++||+||+||+.|..||+.|..+|.+|.+|++++|||.||
T Consensus       198 R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~~  267 (267)
T 1dn1_B          198 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM  267 (267)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999886
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 258
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 4e-24
d1ez3a_124 a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat ( 3e-15
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.7 bits (232), Expect = 4e-24
 Identities = 34/181 (18%), Positives = 77/181 (42%), Gaps = 13/181 (7%)

Query: 11  MQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGK 70
           +   H+   +         ++  ++  V +   +   +K++I+   R+            
Sbjct: 28  VDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG----------- 76

Query: 71  GTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQ 130
               D ++ A     +++F   + +++++  N  +E +E  +R+   +  +  ++E    
Sbjct: 77  --IHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAA 134

Query: 131 LIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDA 190
           + + G  +   Q  +    RG+    LAE+Q RH  +  LE+ + EL Q+F DM  LV  
Sbjct: 135 ISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIE 194

Query: 191 Q 191
           Q
Sbjct: 195 Q 195
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.86
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.47
d1hs7a_97 Vam3p N-terminal domain {Baker's yeast (Saccharomy 86.2
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=4.6e-21  Score=157.69  Aligned_cols=171  Identities=22%  Similarity=0.375  Sum_probs=137.9

Q ss_pred             hHHhHHHHHHHHhhhcChhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCchhHHHHHHHHHHHH
Q 025047            7 CEPGMQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLK   86 (258)
Q Consensus         7 ~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~L~~l~~~~~~~~~~~~~~~~s~~~rirk~q~~~L~   86 (258)
                      .++.|..++.......++.+...++.+++.+..+++.+.+.|+..++.+....             +..|++++++..|+
T Consensus        24 ~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~-------------~~~~~~~~~~~~l~   90 (196)
T d1fioa_          24 TINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG-------------IHDTNKQAQAENSR   90 (196)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------------TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------cchHHHHHHHHHHH
Confidence            45566666666666666677789999999999999999999999999887542             24589999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHHHhCCCchHHHHHH-HHHcchhhhhhhHHHHHHHHH
Q 025047           87 KKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKA-IQEQGRGQIMDTLAEIQERHD  165 (258)
Q Consensus        87 ~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~t~eeie~~~~~~~~~~~~q~~-l~~~~~~q~~~~l~~i~~R~~  165 (258)
                      ++|.+++..|+.+|..|...++.++.|++ .+.+|.+++++++.....++....+... +......+....+.++++|++
T Consensus        91 ~~l~~~~~~f~~~q~~~~~~~k~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eR~~  169 (196)
T d1fioa_          91 QRFLKLIQDYRIVDSNYKEENKEQAKRQY-MIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQ  169 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCTTCCHHHHHHHTSHHHHHHHHHHHTC------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccCCCccchhhhHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999997664 5668899999999887654443443332 233333456678899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025047          166 AVRDLERKLLELQQIFLDMAVLVDAQ  191 (258)
Q Consensus       166 ~i~~ie~~i~eL~~lf~dl~~lV~~Q  191 (258)
                      +|.+||++|.||++||.|||.||++|
T Consensus       170 eI~~Ie~sI~eL~~iF~dLa~LV~eQ  195 (196)
T d1fioa_         170 ELLKLEKSMAELTQLFNDMEELVIEQ  195 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999999988
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure