Citrus Sinensis ID: 025063

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MSFVEITEPIMNVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAVSIS
cccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEEcccccccccHHHHHccHHHcEEEEEEcccccccEEEEEccccEEccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccHHHHHcccccccccccEEEEEEEccccc
ccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHccEEEEEcccccHHHHHHHHccHccEEEEEEEEEEEEEccEEEEEcHHHHHHHHHHHHHcccccEEEEEEcccccccccccccEEEEEcccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHccHHccHcccEEEEEEEccccc
msfveitepimnvpkRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVailpdvpedhRQILESQgcivreiepvyppenqteFAMAYYVINYSKLRIWEFVEYEKMiyldgdiqvfdnidhlfdapdgyfyAVMDCFcektwsnspqftigycqqcpekvqwpvemgsppplyfnagmfvyepnlltyhdlletvkvtpptifaeQDFLNMYFkdiykpipptyNLVVAMLWRHlenvdvdkVKVVHYCAAVSIS
msfveitepimnvpKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLenvdvdkvkVVHYCAAVSIS
MSFVEITEPIMNVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAVSIS
****EITEPIMNVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAV***
***************RAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAVS**
MSFVEITEPIMNVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAVSIS
*************PKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAV***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSFVEITEPIMNVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAVSIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query258 2.2.26 [Sep-21-2011]
Q9FXB2335 Galactinol synthase 2 OS= yes no 0.930 0.716 0.850 1e-122
O22893344 Galactinol synthase 1 OS= no no 0.992 0.744 0.796 1e-120
C7G304338 Galactinol synthase 2 OS= N/A no 0.949 0.724 0.820 1e-120
Q9XGN4333 Galactinol synthase 1 OS= N/A no 0.937 0.726 0.785 1e-115
O22693334 Galactinol synthase 4 OS= no no 0.941 0.727 0.795 1e-115
Q8H1S1336 Galactinol synthase 6 OS= no no 0.937 0.720 0.794 1e-115
O80518334 Galactinol synthase 3 OS= no no 0.930 0.718 0.792 1e-114
Q9FFA1333 Galactinol synthase 5 OS= no no 0.937 0.726 0.761 1e-110
Q9XGN3292 Galactinol synthase 2 (Fr N/A no 0.868 0.767 0.776 1e-104
F4KED2328 Galactinol synthase 10 OS no no 0.910 0.716 0.729 1e-103
>sp|Q9FXB2|GOLS2_ARATH Galactinol synthase 2 OS=Arabidopsis thaliana GN=GOLS2 PE=1 SV=1 Back     alignment and function desciption
 Score =  439 bits (1129), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/241 (85%), Positives = 224/241 (92%), Gaps = 1/241 (0%)

Query: 15  KRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREI 74
           KRAYVTFLAG GDYVKGVVGLAKGLRKAKS+YPLVVA+LPDVPEDHR+ L  QGC+V+EI
Sbjct: 21  KRAYVTFLAGTGDYVKGVVGLAKGLRKAKSKYPLVVAVLPDVPEDHRKQLVDQGCVVKEI 80

Query: 75  EPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFY 134
           EPVYPPENQTEFAMAYYVINYSKLRIWEFVEY KMIYLDGDIQVFDNIDHLFD P+G FY
Sbjct: 81  EPVYPPENQTEFAMAYYVINYSKLRIWEFVEYNKMIYLDGDIQVFDNIDHLFDLPNGQFY 140

Query: 135 AVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWP-VEMGSPPPLYFNAGMFVYEPNLLTYHD 193
           AVMDCFCEKTWS+SPQ+ IGYCQQCP+KV WP  ++G  PPLYFNAGMFVYEPNL TYH+
Sbjct: 141 AVMDCFCEKTWSHSPQYKIGYCQQCPDKVTWPEAKLGPKPPLYFNAGMFVYEPNLSTYHN 200

Query: 194 LLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCA 253
           LLETVK+ PPT+FAEQDFLNMYFKDIYKPIPP YNLV+AMLWRH EN+++D+VKVVHYCA
Sbjct: 201 LLETVKIVPPTLFAEQDFLNMYFKDIYKPIPPVYNLVLAMLWRHPENIELDQVKVVHYCA 260

Query: 254 A 254
           A
Sbjct: 261 A 261
Galactinol synthase involved in the biosynthesis of raffinose family oligosaccharides (RFOs) that function as osmoprotectants. Promotes stress tolerance of factors such as drought, chilling, salinity and methylviologen (MV), a superoxide radical generating drug, by mediating an increase in levels of the endogenous osmoprotective compounds, galactinol and raffinose.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 2EC: 3
>sp|O22893|GOLS1_ARATH Galactinol synthase 1 OS=Arabidopsis thaliana GN=GOLS1 PE=1 SV=1 Back     alignment and function description
>sp|C7G304|GOLS2_SOLLC Galactinol synthase 2 OS=Solanum lycopersicum GN=GOLS2 PE=2 SV=1 Back     alignment and function description
>sp|Q9XGN4|GOLS1_AJURE Galactinol synthase 1 OS=Ajuga reptans GN=GOLS1 PE=1 SV=1 Back     alignment and function description
>sp|O22693|GOLS4_ARATH Galactinol synthase 4 OS=Arabidopsis thaliana GN=GOLS4 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1S1|GOLS6_ARATH Galactinol synthase 6 OS=Arabidopsis thaliana GN=GOLS6 PE=2 SV=1 Back     alignment and function description
>sp|O80518|GOLS3_ARATH Galactinol synthase 3 OS=Arabidopsis thaliana GN=GOLS3 PE=1 SV=1 Back     alignment and function description
>sp|Q9FFA1|GOLS5_ARATH Galactinol synthase 5 OS=Arabidopsis thaliana GN=GOLS5 PE=2 SV=1 Back     alignment and function description
>sp|Q9XGN3|GOLS2_AJURE Galactinol synthase 2 (Fragment) OS=Ajuga reptans GN=GOLS2 PE=1 SV=1 Back     alignment and function description
>sp|F4KED2|GOLSA_ARATH Galactinol synthase 10 OS=Arabidopsis thaliana GN=GOLS10 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
224108808325 predicted protein [Populus trichocarpa] 0.984 0.781 0.850 1e-127
255556498318 conserved hypothetical protein [Ricinus 0.957 0.776 0.858 1e-125
18874402331 galactinol synthase [Cucumis melo] 0.949 0.740 0.853 1e-123
449441518331 PREDICTED: galactinol synthase 2-like [C 0.949 0.740 0.853 1e-123
224130924336 predicted protein [Populus trichocarpa] 0.949 0.729 0.840 1e-123
167858183337 galactinol synthase 3 [Populus trichocar 0.930 0.712 0.870 1e-123
356572821335 PREDICTED: glycogenin-1-like [Glycine ma 0.976 0.752 0.826 1e-123
224124982337 predicted protein [Populus trichocarpa] 0.930 0.712 0.870 1e-123
339655354337 galactinol synthase 2-2 [Populus trichoc 0.930 0.712 0.866 1e-123
356505653339 PREDICTED: glycogenin-2-like [Glycine ma 0.984 0.749 0.811 1e-123
>gi|224108808|ref|XP_002314975.1| predicted protein [Populus trichocarpa] gi|222864015|gb|EEF01146.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/254 (85%), Positives = 234/254 (92%)

Query: 1   MSFVEITEPIMNVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDH 60
           MS   I EP  N  KRAYVTFLAGNGDYVKGVVGLAKGLRKAKS YPL+VAILPDVPE+H
Sbjct: 1   MSPNAIIEPTFNSHKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSSYPLMVAILPDVPEEH 60

Query: 61  RQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFD 120
           R+ILESQGCIVREIEPVYPP+NQT+FAMAYYVINYSKLRIWEFV+YEKMIYLDGDIQVFD
Sbjct: 61  RKILESQGCIVREIEPVYPPDNQTQFAMAYYVINYSKLRIWEFVDYEKMIYLDGDIQVFD 120

Query: 121 NIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAG 180
           NIDHLFD P+GYFYAVMDCFCEKTWS++PQ+ IGYCQQCPEKV+WP EMGSPPPLYFNAG
Sbjct: 121 NIDHLFDEPNGYFYAVMDCFCEKTWSSTPQYQIGYCQQCPEKVRWPKEMGSPPPLYFNAG 180

Query: 181 MFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLEN 240
           MFV+EP LLTY DLLET+KVTPPT FAEQDFLNM+F+D+YKPIP  YNLV AMLWRH EN
Sbjct: 181 MFVFEPKLLTYFDLLETLKVTPPTSFAEQDFLNMFFRDVYKPIPAVYNLVSAMLWRHPEN 240

Query: 241 VDVDKVKVVHYCAA 254
            ++DKVKVVHYCAA
Sbjct: 241 FELDKVKVVHYCAA 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556498|ref|XP_002519283.1| conserved hypothetical protein [Ricinus communis] gi|223541598|gb|EEF43147.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|18874402|gb|AAL78687.1| galactinol synthase [Cucumis melo] Back     alignment and taxonomy information
>gi|449441518|ref|XP_004138529.1| PREDICTED: galactinol synthase 2-like [Cucumis sativus] gi|449484955|ref|XP_004157029.1| PREDICTED: galactinol synthase 2-like [Cucumis sativus] gi|29569824|gb|AAO84915.1| galactinol synthase [Cucumis sativus] Back     alignment and taxonomy information
>gi|224130924|ref|XP_002320958.1| predicted protein [Populus trichocarpa] gi|222861731|gb|EEE99273.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|167858183|gb|ACA04032.1| galactinol synthase 3 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356572821|ref|XP_003554564.1| PREDICTED: glycogenin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|224124982|ref|XP_002319473.1| predicted protein [Populus trichocarpa] gi|222857849|gb|EEE95396.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|339655354|gb|AEJ87261.1| galactinol synthase 2-2 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356505653|ref|XP_003521604.1| PREDICTED: glycogenin-2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
TAIR|locus:2027549335 GolS2 "galactinol synthase 2" 0.968 0.746 0.814 7.9e-117
TAIR|locus:2062860344 GolS1 "AT2G47180" [Arabidopsis 0.992 0.744 0.8 1.5e-113
TAIR|locus:2012320334 GolS3 "galactinol synthase 3" 0.930 0.718 0.792 7.8e-110
TAIR|locus:2036576334 GolS4 "galactinol synthase 4" 0.941 0.727 0.795 1.6e-109
UNIPROTKB|Q9XGN4333 GOLS1 "Galactinol synthase 1" 0.937 0.726 0.785 4.3e-109
TAIR|locus:2136829336 GolS6 "galactinol synthase 6" 0.926 0.711 0.8 3.9e-108
TAIR|locus:2172848333 GolS5 "AT5G23790" [Arabidopsis 0.926 0.717 0.766 1.4e-103
UNIPROTKB|Q9XGN3292 GOLS2 "Galactinol synthase 2" 0.868 0.767 0.776 1.9e-99
TAIR|locus:2195668332 GolS7 "galactinol synthase 7" 0.965 0.75 0.697 2.5e-97
TAIR|locus:2145855328 GolS10 "galactinol synthase 10 0.899 0.707 0.734 2.9e-96
TAIR|locus:2027549 GolS2 "galactinol synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
 Identities = 207/254 (81%), Positives = 230/254 (90%)

Query:     5 EITEPIMNVP---KRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHR 61
             ++T P+ +     KRAYVTFLAG GDYVKGVVGLAKGLRKAKS+YPLVVA+LPDVPEDHR
Sbjct:     8 KLTVPVHSATGGEKRAYVTFLAGTGDYVKGVVGLAKGLRKAKSKYPLVVAVLPDVPEDHR 67

Query:    62 QILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDN 121
             + L  QGC+V+EIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEY KMIYLDGDIQVFDN
Sbjct:    68 KQLVDQGCVVKEIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYNKMIYLDGDIQVFDN 127

Query:   122 IDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWP-VEMGSPPPLYFNAG 180
             IDHLFD P+G FYAVMDCFCEKTWS+SPQ+ IGYCQQCP+KV WP  ++G  PPLYFNAG
Sbjct:   128 IDHLFDLPNGQFYAVMDCFCEKTWSHSPQYKIGYCQQCPDKVTWPEAKLGPKPPLYFNAG 187

Query:   181 MFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLEN 240
             MFVYEPNL TYH+LLETVK+ PPT+FAEQDFLNMYFKDIYKPIPP YNLV+AMLWRH EN
Sbjct:   188 MFVYEPNLSTYHNLLETVKIVPPTLFAEQDFLNMYFKDIYKPIPPVYNLVLAMLWRHPEN 247

Query:   241 VDVDKVKVVHYCAA 254
             +++D+VKVVHYCAA
Sbjct:   248 IELDQVKVVHYCAA 261
GO:0005634 "nucleus" evidence=ISM
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS
GO:0009414 "response to water deprivation" evidence=IEP
GO:0009651 "response to salt stress" evidence=IEP;IMP
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0047216 "inositol 3-alpha-galactosyltransferase activity" evidence=IDA
GO:0006012 "galactose metabolic process" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0009409 "response to cold" evidence=IMP
TAIR|locus:2062860 GolS1 "AT2G47180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012320 GolS3 "galactinol synthase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036576 GolS4 "galactinol synthase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XGN4 GOLS1 "Galactinol synthase 1" [Ajuga reptans (taxid:38596)] Back     alignment and assigned GO terms
TAIR|locus:2136829 GolS6 "galactinol synthase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172848 GolS5 "AT5G23790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XGN3 GOLS2 "Galactinol synthase 2" [Ajuga reptans (taxid:38596)] Back     alignment and assigned GO terms
TAIR|locus:2195668 GolS7 "galactinol synthase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145855 GolS10 "galactinol synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
C7G304GOLS2_SOLLC2, ., 4, ., 1, ., 1, 2, 30.82040.94960.7248N/Ano
Q9FXB2GOLS2_ARATH2, ., 4, ., 1, ., 1, 2, 30.85060.93020.7164yesno
Q9XGN4GOLS1_AJURE2, ., 4, ., 1, ., 1, 2, 30.78510.93790.7267N/Ano
Q9XGN3GOLS2_AJURE2, ., 4, ., 1, ., 1, 2, 30.77670.86820.7671N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.186LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_X000590
galactinol synthase (EC-2.4.1.123) (325 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
PLN00176333 PLN00176, PLN00176, galactinol synthase 0.0
cd02537240 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 4e-80
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 5e-59
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 1e-15
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 6e-11
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 1e-09
COG5597368 COG5597, COG5597, Alpha-N-acetylglucosamine transf 7e-09
cd06914278 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that be 2e-08
>gnl|CDD|215090 PLN00176, PLN00176, galactinol synthase Back     alignment and domain information 
 Score =  557 bits (1438), Expect = 0.0
 Identities = 208/243 (85%), Positives = 227/243 (93%)

Query: 14  PKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVRE 73
            KRAYVTFLAGNGDYVKGVVGLAKGLRK KS YPLVVA+LPDVPE+HR+IL SQGCIVRE
Sbjct: 21  AKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVRE 80

Query: 74  IEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYF 133
           IEPVYPPENQT+FAMAYYVINYSKLRIWEFVEY KMIYLDGDIQVF+NIDHLFD PDGYF
Sbjct: 81  IEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYF 140

Query: 134 YAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHD 193
           YAVMDCFCEKTWS++PQ+ IGYCQQCP+KV WP E+G PPPLYFNAGMFV+EP+L TY D
Sbjct: 141 YAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGPPPPLYFNAGMFVFEPSLSTYED 200

Query: 194 LLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCA 253
           LLET+K+TPPT FAEQDFLNM+F+DIYKPIPP YNLV+AMLWRH ENV++DKVKVVHYCA
Sbjct: 201 LLETLKITPPTPFAEQDFLNMFFRDIYKPIPPVYNLVLAMLWRHPENVELDKVKVVHYCA 260

Query: 254 AVS 256
           A S
Sbjct: 261 AGS 263

Length = 333
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|227884 COG5597, COG5597, Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|133064 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 258
PLN00176333 galactinol synthase 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 100.0
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 100.0
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 100.0
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 100.0
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 100.0
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 100.0
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 99.97
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.97
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.97
PLN02718603 Probable galacturonosyltransferase 99.94
PLN02523559 galacturonosyltransferase 99.94
PLN02867535 Probable galacturonosyltransferase 99.91
PLN02659534 Probable galacturonosyltransferase 99.91
PLN02870533 Probable galacturonosyltransferase 99.9
PLN02769629 Probable galacturonosyltransferase 99.9
PLN02742534 Probable galacturonosyltransferase 99.89
PLN02829639 Probable galacturonosyltransferase 99.89
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 99.87
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 99.7
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 98.71
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 98.56
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 98.37
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 97.66
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 97.15
PF07801142 DUF1647: Protein of unknown function (DUF1647); In 96.78
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 95.6
KOG1928409 consensus Alpha-1,4-N-acetylglucosaminyltransferas 93.29
PLN03181453 glycosyltransferase; Provisional 92.87
cd02515271 Glyco_transf_6 Glycosyltransferase family 6 compri 92.71
KOG4748364 consensus Subunit of Golgi mannosyltransferase com 88.46
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 82.4
>PLN00176 galactinol synthase Back     alignment and domain information 
Probab=100.00  E-value=3.7e-59  Score=399.19  Aligned_cols=248  Identities=84%  Similarity=1.471  Sum_probs=226.5

Q ss_pred             CCCCCeEEEEEeecCCccHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCEEEEecccCCCCchhhhhhhh
Q 025063           11 MNVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAY   90 (258)
Q Consensus        11 ~~~~~~a~vt~l~~d~~y~~~~~vl~~Sl~~~~~~~~~~vl~~~~~~~~~~~~L~~~~~~i~~v~~~~~~~~~~~~~~~~   90 (258)
                      ..++++||||+|++|++|++++.+|++||+++++.++++++++++++++.++.|++.|+.+++|+++.++++..++..++
T Consensus        18 ~~~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V~~V~~i~~~~~~~~~~~~~   97 (333)
T PLN00176         18 AKPAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEPVYPPENQTQFAMAY   97 (333)
T ss_pred             cccCceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCcccccccccch
Confidence            33679999999999999999999999999999999999999999999999999999999999999987665554555556


Q ss_pred             hhhceeeeeccccccccEEEEEecceecccCchhhcCCCCCceeeeechhcccCCCCCCcccccccccCCCCcCCCCcCC
Q 025063           91 YVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMG  170 (258)
Q Consensus        91 ~~~~~~Kl~l~~l~~ydrvlyLD~D~lv~~~l~~Lf~~~~~~iaa~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g  170 (258)
                      +..+|+||++|++.+||||||||+|++|++|||+||+++.+.+|||.||++++.|++.|++++++|+.++++.+||..+|
T Consensus        98 ~~i~~tKl~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g  177 (333)
T PLN00176         98 YVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELG  177 (333)
T ss_pred             hhhhhhhhhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhhcc
Confidence            67789999999999999999999999999999999999877899999999998899999999999998888899998777


Q ss_pred             CCCCCCcceeEEEEecCHHHHHHHHHHhhcCCCCCCCChhHHHHHhccCccccCCcccccceeecccCCCccCCCceEEE
Q 025063          171 SPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVH  250 (258)
Q Consensus       171 ~~~~~~fNsGvmli~~~~~~~~~l~~~~~~~~~~~~~DQ~~LN~~~~~~~~~L~~~yN~~~~~~~~~~~~~~~~~~~IiH  250 (258)
                      .++..||||||||++|+.++++++++.++..+...|+|||+||.+|.++|+.||.+||++....|++++.|+.++++|||
T Consensus       178 ~~~~~yFNSGVlvinps~~~~~~ll~~l~~~~~~~f~DQD~LN~~F~~~~~~Lp~~YN~~~~~~~~~~~~~~~~~vkIIH  257 (333)
T PLN00176        178 PPPPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFRDIYKPIPPVYNLVLAMLWRHPENVELDKVKVVH  257 (333)
T ss_pred             CCCCCeEEeEEEEEEcCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcEEECCchhcCchhhhhhChhhcccCCcEEEE
Confidence            66678999999999999999999999988766678999999999999999999999999988888888888888999999


Q ss_pred             EeeccCCC
Q 025063          251 YCAAVSIS  258 (258)
Q Consensus       251 y~~~~~kp  258 (258)
                      |+|.+.||
T Consensus       258 Y~~~~~KP  265 (333)
T PLN00176        258 YCAAGSKP  265 (333)
T ss_pred             eeCCCCCC
Confidence            99878898

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens Back     alignment and domain information
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
3u2t_A284 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 4e-15
3t7m_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 4e-15
3q4s_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo 5e-15
3rmw_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m 8e-15
3usq_A291 Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED 5e-13
1zcy_A 353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 5e-13
3v8y_A291 Structure Of Apo-Glycogenin Truncated At Residue 27 6e-13
1ll0_A 339 Crystal Structure Of Rabbit Muscle Glycogenin Lengt 6e-13
1zcv_A 353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 7e-13
1zct_A290 Structure Of Glycogenin Truncated At Residue 270 In 7e-13
3usr_A291 Structure Of Y194f Glycogenin Mutant Truncated At R 7e-13
1ll2_A 333 Crystal Structure Of Rabbit Muscle Glycogenin Compl 8e-13
1zcu_A 353 Apo Form Of The 162s Mutant Of Glycogenin Length = 1e-12
3v90_A291 Structure Of T82m Glycogenin Mutant Truncated At Re 1e-12
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese Length = 284 Back     alignment and structure 
Iteration: 1

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 104/257 (40%), Gaps = 52/257 (20%)
Query: 12  NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
           ++  +A+VT L  N  Y KG + L   L++ ++   LVV   P V +  R++LE+     
Sbjct: 22  SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 80
Query: 70  IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
           I+ ++       + T        +  +KL  W   +Y K +++D D  V  NID LFD  
Sbjct: 81  IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 140
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
                                                 E+ + P    P  FN+G+FVY+
Sbjct: 141 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 162
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
           P++ TY+ LL            +Q  LN +F      DI K +P  YNL    ++ +L  
Sbjct: 163 PSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPA 222
Query: 241 VDV--DKVKVVHYCAAV 255
             V     KVVH+   V
Sbjct: 223 FKVFGASAKVVHFLGRV 239
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese And Udp, In A Triclinic Closed Form Length = 263 Back     alignment and structure
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form Length = 263 Back     alignment and structure
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose Length = 263 Back     alignment and structure
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 Length = 291 Back     alignment and structure
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Ser Length = 353 Back     alignment and structure
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Length = 339 Back     alignment and structure
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn Length = 353 Back     alignment and structure
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp Length = 290 Back     alignment and structure
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed With Udp- Glucose And Manganese Length = 333 Back     alignment and structure
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin Length = 353 Back     alignment and structure
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
1ll2_A 333 Glycogenin-1; protein-substrate complex, beta-alph 2e-46
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 1e-45
3tzt_A276 Glycosyl transferase family 8; structural genomics 2e-15
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 4e-15
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333 Back     alignment and structure
 Score =  156 bits (395), Expect = 2e-46
 Identities = 62/251 (24%), Positives = 96/251 (38%), Gaps = 44/251 (17%)

Query: 13  VPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVR 72
           +  +A+VT L  N  Y KG + L   L++ ++   L V   P V +  R+ LE     V 
Sbjct: 1   MTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVI 59

Query: 73  EIEPVYPP--ENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPD 130
            ++ +      + T        +  +KL  W   +Y K +++D D  V  NID LF+   
Sbjct: 60  TVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE- 118

Query: 131 GYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLT 190
               A  D                                   P  FN+G+FVY+P++ T
Sbjct: 119 -ELSAAPDPG--------------------------------WPDCFNSGVFVYQPSVET 145

Query: 191 YHDLLETVKVTPPTIFAEQDFLNMYF-----KDIYKPIPPTYNLVVAMLWRHLENV--DV 243
           Y+ LL            +Q  LN +F      DI K +P  YNL    ++ +L       
Sbjct: 146 YNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFG 205

Query: 244 DKVKVVHYCAA 254
              KVVH+   
Sbjct: 206 ANAKVVHFLGQ 216
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263 Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 100.0
1ll2_A 333 Glycogenin-1; protein-substrate complex, beta-alph 100.0
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 100.0
1o7q_A289 N-acetyllactosaminide alpha-1,3- galactosyltransfe 82.08
3ioh_A298 Histo-blood group ABO system transferase; GTA, cis 80.49
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
Probab=100.00  E-value=6.1e-46  Score=310.99  Aligned_cols=209  Identities=31%  Similarity=0.488  Sum_probs=177.3

Q ss_pred             CCeEEEEEeecCCccHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCEEEEecccCCCCc--hhhhhhhhh
Q 025063           14 PKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPEN--QTEFAMAYY   91 (258)
Q Consensus        14 ~~~a~vt~l~~d~~y~~~~~vl~~Sl~~~~~~~~~~vl~~~~~~~~~~~~L~~~~~~i~~v~~~~~~~~--~~~~~~~~~   91 (258)
                      +++|||| +++|++|++++.++++||++++++++++++++++++++.++.|++.+.+++.|+++.....  .+.+.++.+
T Consensus         3 ~~~AyvT-l~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~~   81 (263)
T 3u2u_A            3 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPEL   81 (263)
T ss_dssp             TTEEEEE-EESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTTG
T ss_pred             cceEEEE-EEECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcch
Confidence            4899999 4589999999999999999999999999999999999999999999999998888765321  111233455


Q ss_pred             hhceeeeeccccccccEEEEEecceecccCchhhcCCCCCceeeeechhcccCCCCCCcccccccccCCCCcCCCCcCCC
Q 025063           92 VINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGS  171 (258)
Q Consensus        92 ~~~~~Kl~l~~l~~ydrvlyLD~D~lv~~~l~~Lf~~~~~~iaa~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~  171 (258)
                      ..+|+|+.+|++.+||||||||+|++|++|+++||+++  .+||++|.                        +||     
T Consensus        82 ~~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~--~~aA~~d~------------------------~~~-----  130 (263)
T 3u2u_A           82 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE--ELSAAPDP------------------------GWP-----  130 (263)
T ss_dssp             GGGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSC--SSEEEECT------------------------TST-----
T ss_pred             hHHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCC--cceEeccC------------------------CCC-----
Confidence            67999999999999999999999999999999999997  48888762                        232     


Q ss_pred             CCCCCcceeEEEEecCHHHHHHHHHHhhcCCCCCCCChhHHHHHhcc-----CccccCCcccccceeecccCCCcc--CC
Q 025063          172 PPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKD-----IYKPIPPTYNLVVAMLWRHLENVD--VD  244 (258)
Q Consensus       172 ~~~~~fNsGvmli~~~~~~~~~l~~~~~~~~~~~~~DQ~~LN~~~~~-----~~~~L~~~yN~~~~~~~~~~~~~~--~~  244 (258)
                         .||||||||++++...++++++.+.+..++.++|||+||.+|.+     .++.||.+||++....+++.+.+.  .+
T Consensus       131 ---~~fNsGv~li~p~~~~~~~l~~~~~~~~~~~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~  207 (263)
T 3u2u_A          131 ---DCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGA  207 (263)
T ss_dssp             ---TSEEEEEEEECCCHHHHHHHHHHHHHHCCTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHGG
T ss_pred             ---ccccCeEEEEcccHHHHHHHHHHHHhcCCCCcccHHHHHHHhccccccCeeEeCCcccccccchhccccHHHHhhcC
Confidence               69999999999999999999999887666788999999999987     689999999998765444333332  57


Q ss_pred             CceEEEEeeccCCC
Q 025063          245 KVKVVHYCAAVSIS  258 (258)
Q Consensus       245 ~~~IiHy~~~~~kp  258 (258)
                      +++||||+| +.||
T Consensus       208 ~~~IIHf~g-~~KP  220 (263)
T 3u2u_A          208 SAKVVHFLG-RVKP  220 (263)
T ss_dssp             GCSEEECCS-SSCG
T ss_pred             CeEEEEECC-CCcC
Confidence            899999999 6787
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ... Back     alignment and structure
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 258
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 9e-38
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 5e-16
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  131 bits (329), Expect = 9e-38
 Identities = 62/249 (24%), Positives = 95/249 (38%), Gaps = 44/249 (17%)

Query: 15  KRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREI 74
            +A+VT L  N  Y KG + L   L++ ++   L V   P V +  R+ LE     V  +
Sbjct: 3   DQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITV 61

Query: 75  EPVYPP--ENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGY 132
           + +      + T        +  +KL  W   +Y K +++D D  V  NID LF+     
Sbjct: 62  DILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE--E 119

Query: 133 FYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYH 192
             A  D                                   P  FN+G+FVY+P++ TY+
Sbjct: 120 LSAAPDPG--------------------------------WPDCFNSGVFVYQPSVETYN 147

Query: 193 DLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLENVDV--DK 245
            LL            +Q  LN +F      DI K +P  YNL    ++ +L         
Sbjct: 148 QLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGAN 207

Query: 246 VKVVHYCAA 254
            KVVH+   
Sbjct: 208 AKVVHFLGQ 216
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 100.0
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 100.0
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 96.53
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 95.65
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=9.4e-40  Score=273.45  Aligned_cols=209  Identities=29%  Similarity=0.441  Sum_probs=171.0

Q ss_pred             CCeEEEEEeecCCccHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCEEEEecccCCCCchh--hhhhhhh
Q 025063           14 PKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQT--EFAMAYY   91 (258)
Q Consensus        14 ~~~a~vt~l~~d~~y~~~~~vl~~Sl~~~~~~~~~~vl~~~~~~~~~~~~L~~~~~~i~~v~~~~~~~~~~--~~~~~~~   91 (258)
                      +..|||| +++|++|+++++|+++||+++++.++++++++++++++.++.|++.+..++.++.+..+....  ...+.++
T Consensus         2 ~~~A~vt-~~t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~   80 (263)
T d1ll2a_           2 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL   80 (263)
T ss_dssp             CSEEEEE-EESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred             CccEEEE-EEeCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhhhccccc
Confidence            3679999 557999999999999999999999999999999999999999999999988888876653321  1223456


Q ss_pred             hhceeeeeccccccccEEEEEecceecccCchhhcCCCCCceeeeechhcccCCCCCCcccccccccCCCCcCCCCcCCC
Q 025063           92 VINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGS  171 (258)
Q Consensus        92 ~~~~~Kl~l~~l~~ydrvlyLD~D~lv~~~l~~Lf~~~~~~iaa~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~  171 (258)
                      ..+|+||++|++.+||||||||+|+||++||++||+.+.  ++|+.+..                               
T Consensus        81 ~~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~Lf~~~~--~~a~~~~~-------------------------------  127 (263)
T d1ll2a_          81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE--LSAAPDPG-------------------------------  127 (263)
T ss_dssp             HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCS--SEEEECSS-------------------------------
T ss_pred             hhhhHHHHHhhhcccceEEEeCCCEEEecCHHHHhcCCc--cceeccCC-------------------------------
Confidence            789999999999999999999999999999999999874  56665410                               


Q ss_pred             CCCCCcceeEEEEecCHHHHHHHHHHhhcCCCCCCCChhHHHHHhcc-----CccccCCcccccceeecccCCCc--cCC
Q 025063          172 PPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKD-----IYKPIPPTYNLVVAMLWRHLENV--DVD  244 (258)
Q Consensus       172 ~~~~~fNsGvmli~~~~~~~~~l~~~~~~~~~~~~~DQ~~LN~~~~~-----~~~~L~~~yN~~~~~~~~~~~~~--~~~  244 (258)
                       ...|||||||++++++++++.+.+.+.+..+..++||+++|..+.+     .+..||..||+.....+.....+  ...
T Consensus       128 -~~~~~nsGv~l~~p~~~~~~~i~~~~~~~~~~~~~dq~~ln~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  206 (263)
T d1ll2a_         128 -WPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGA  206 (263)
T ss_dssp             -STTSEEEEEEEECCCHHHHHHHHHHHHHTCCTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGG
T ss_pred             -CcccccCCcEEECccHHHHHHHHHHHHhhCCCChhhhhHHHHHHHhhhccCcccccCHHHhhhhhhhhhhhHhHHhhcC
Confidence             1378999999999999999999998887766778999999998875     46678888888765443332222  257


Q ss_pred             CceEEEEeeccCCC
Q 025063          245 KVKVVHYCAAVSIS  258 (258)
Q Consensus       245 ~~~IiHy~~~~~kp  258 (258)
                      +++||||+| +.||
T Consensus       207 ~~~iIHf~g-~~KP  219 (263)
T d1ll2a_         207 NAKVVHFLG-QTKP  219 (263)
T ss_dssp             GCSEEECCS-SCCG
T ss_pred             CeEEEEeCC-CCCC
Confidence            899999998 5687
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure